bio-rdf 0.0.1.pre1 → 0.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (17) hide show
  1. data/Gemfile +4 -1
  2. data/README.md +53 -3
  3. data/VERSION +1 -1
  4. data/bin/bio-rdf +35 -4
  5. data/doc/design.md +20 -0
  6. data/features/parse_broad_gsea_cls.feature +18 -0
  7. data/features/parse_broad_gsea_cls.rb +13 -0
  8. data/features/parse_broad_gsea_results.feature +29 -0
  9. data/features/parse_broad_gsea_results.rb +59 -0
  10. data/features/support/env.rb +13 -0
  11. data/lib/bio-rdf.rb +2 -1
  12. data/lib/bio-rdf/parsers/gsea/broadgsea.rb +161 -0
  13. data/spec/spec_helper.rb +12 -0
  14. data/test/data/parsers/gsea/Run1_C2.SUMMARY.RESULTS.REPORT.0.txt +1066 -0
  15. data/test/data/parsers/gsea/Run1_C2.SUMMARY.RESULTS.REPORT.1.txt +474 -0
  16. metadata +62 -21
  17. data/README.rdoc +0 -46
data/test/data/parsers/gsea/Run1_C2.SUMMARY.RESULTS.REPORT.1.txt ADDED
@@ -0,0 +1,474 @@
1
+ GS SIZE SOURCE ES NES NOM p-val FDR q-val FWER p-val Tag \% Gene \% Signal FDR (median) glob.p.val
2
+ COATES_MACROPHAGE_M1_VS_M2_UP 59 http://www.broadinstitute.org/gsea/msigdb/cards/COATES_MACROPHAGE_M1_VS_M2_UP.html -0.47463 -1.7249 0.005693 1 0.855 0.305 0.0893 0.28 1 0.671
3
+ RAMALHO_STEMNESS_DN 56 http://www.broadinstitute.org/gsea/msigdb/cards/RAMALHO_STEMNESS_DN.html -0.48507 -1.6732 0.01504 1 0.942 0.536 0.263 0.397 1 0.674
4
+ XU_AKT1_TARGETS_6HR 17 http://www.broadinstitute.org/gsea/msigdb/cards/XU_AKT1_TARGETS_6HR.html -0.58278 -1.6641 0.01942 1 0.955 0.294 0.0539 0.279 1 0.567
5
+ KEGG_GLYCOSAMINOGLYCAN_DEGRADATION 15 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_GLYCOSAMINOGLYCAN_DEGRADATION.html -0.61792 -1.6266 0.04167 1 0.981 0.267 0.0362 0.257 1 0.654
6
+ SCHLOSSER_SERUM_RESPONSE_UP 84 http://www.broadinstitute.org/gsea/msigdb/cards/SCHLOSSER_SERUM_RESPONSE_UP.html -0.43423 -1.6122 0.03614 1 0.986 0.452 0.233 0.35 1 0.619
7
+ MOHANKUMAR_TLX1_TARGETS_DN 46 http://www.broadinstitute.org/gsea/msigdb/cards/MOHANKUMAR_TLX1_TARGETS_DN.html -0.4959 -1.516 0.03622 1 0.998 0.522 0.22 0.409 1 0.905
8
+ LEE_DIFFERENTIATING_T_LYMPHOCYTE 83 http://www.broadinstitute.org/gsea/msigdb/cards/LEE_DIFFERENTIATING_T_LYMPHOCYTE.html -0.41623 -1.5034 0.07212 1 0.998 0.349 0.155 0.298 1 0.889
9
+ WINTER_HYPOXIA_DN 29 http://www.broadinstitute.org/gsea/msigdb/cards/WINTER_HYPOXIA_DN.html -0.53013 -1.4937 0.0695 1 0.998 0.517 0.163 0.434 1 0.883
10
+ WANG_BARRETTS_ESOPHAGUS_UP 20 http://www.broadinstitute.org/gsea/msigdb/cards/WANG_BARRETTS_ESOPHAGUS_UP.html -0.53107 -1.4857 0.07602 1 0.999 0.45 0.0981 0.407 1 0.875
11
+ LIAN_LIPA_TARGETS_6M 66 http://www.broadinstitute.org/gsea/msigdb/cards/LIAN_LIPA_TARGETS_6M.html -0.44122 -1.4772 0.05081 1 0.999 0.455 0.193 0.37 1 0.858
12
+ FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_DN 276 http://www.broadinstitute.org/gsea/msigdb/cards/FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_DN.html -0.38136 -1.4334 0.05613 1 0.999 0.355 0.198 0.293 1 0.93
13
+ DACOSTA_UV_RESPONSE_VIA_ERCC3_TTD_UP 38 http://www.broadinstitute.org/gsea/msigdb/cards/DACOSTA_UV_RESPONSE_VIA_ERCC3_TTD_UP.html -0.44133 -1.4332 0.0932 1 0.999 0.526 0.224 0.41 1 0.912
14
+ DUNNE_TARGETS_OF_AML1_MTG8_FUSION_UP 27 http://www.broadinstitute.org/gsea/msigdb/cards/DUNNE_TARGETS_OF_AML1_MTG8_FUSION_UP.html -0.45952 -1.4315 0.06371 1 0.999 0.333 0.155 0.283 1 0.888
15
+ FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_UP 61 http://www.broadinstitute.org/gsea/msigdb/cards/FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_REJECTED_VS_OK_UP.html -0.43878 -1.4245 0.103 1 1 0.426 0.198 0.344 1 0.883
16
+ GARCIA_TARGETS_OF_FLI1_AND_DAX1_UP 26 http://www.broadinstitute.org/gsea/msigdb/cards/GARCIA_TARGETS_OF_FLI1_AND_DAX1_UP.html -0.45139 -1.4098 0.08451 1 1 0.577 0.232 0.444 1 0.9
17
+ WHITEHURST_PACLITAXEL_SENSITIVITY 15 http://www.broadinstitute.org/gsea/msigdb/cards/WHITEHURST_PACLITAXEL_SENSITIVITY.html -0.48715 -1.3961 0.1158 1 1 0.533 0.27 0.39 1 0.918
18
+ BIOCARTA_CHEMICAL_PATHWAY 18 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_CHEMICAL_PATHWAY.html -0.43613 -1.3932 0.0787 1 1 0.444 0.194 0.359 1 0.902
19
+ BENNETT_SYSTEMIC_LUPUS_ERYTHEMATOSUS 15 http://www.broadinstitute.org/gsea/msigdb/cards/BENNETT_SYSTEMIC_LUPUS_ERYTHEMATOSUS.html -0.65161 -1.3884 0.1667 1 1 0.667 0.19 0.541 1 0.902
20
+ BROWNE_INTERFERON_RESPONSIVE_GENES 50 http://www.broadinstitute.org/gsea/msigdb/cards/BROWNE_INTERFERON_RESPONSIVE_GENES.html -0.59686 -1.3875 0.1831 1 1 0.7 0.249 0.528 1 0.889
21
+ DAUER_STAT3_TARGETS_DN 23 http://www.broadinstitute.org/gsea/msigdb/cards/DAUER_STAT3_TARGETS_DN.html -0.62849 -1.3795 0.166 1 1 0.652 0.19 0.53 1 0.886
22
+ COWLING_MYCN_TARGETS 17 http://www.broadinstitute.org/gsea/msigdb/cards/COWLING_MYCN_TARGETS.html -0.47929 -1.3772 0.1107 1 1 0.294 0.089 0.268 1 0.876
23
+ ZHAN_V1_LATE_DIFFERENTIATION_GENES_UP 25 http://www.broadinstitute.org/gsea/msigdb/cards/ZHAN_V1_LATE_DIFFERENTIATION_GENES_UP.html -0.41085 -1.3744 0.08661 1 1 0.28 0.147 0.239 1 0.872
24
+ ASTON_MAJOR_DEPRESSIVE_DISORDER_UP 18 http://www.broadinstitute.org/gsea/msigdb/cards/ASTON_MAJOR_DEPRESSIVE_DISORDER_UP.html -0.47631 -1.3577 0.1522 1 1 0.444 0.268 0.326 1 0.897
25
+ VANHARANTA_UTERINE_FIBROID_UP 16 http://www.broadinstitute.org/gsea/msigdb/cards/VANHARANTA_UTERINE_FIBROID_UP.html -0.47113 -1.3451 0.1361 1 1 0.438 0.183 0.358 1 0.908
26
+ LIAN_LIPA_TARGETS_3M 56 http://www.broadinstitute.org/gsea/msigdb/cards/LIAN_LIPA_TARGETS_3M.html -0.4105 -1.3446 0.1158 1 1 0.429 0.193 0.348 1 0.892
27
+ MORI_IMMATURE_B_LYMPHOCYTE_UP 38 http://www.broadinstitute.org/gsea/msigdb/cards/MORI_IMMATURE_B_LYMPHOCYTE_UP.html -0.43521 -1.3346 0.1402 1 1 0.368 0.149 0.315 1 0.914
28
+ JI_RESPONSE_TO_FSH_UP 33 http://www.broadinstitute.org/gsea/msigdb/cards/JI_RESPONSE_TO_FSH_UP.html -0.36017 -1.3269 0.1016 1 1 0.212 0.0945 0.193 1 0.917
29
+ MOREIRA_RESPONSE_TO_TSA_UP 24 http://www.broadinstitute.org/gsea/msigdb/cards/MOREIRA_RESPONSE_TO_TSA_UP.html -0.46224 -1.3101 0.1583 1 1 0.333 0.118 0.295 1 0.934
30
+ ICHIBA_GRAFT_VERSUS_HOST_DISEASE_35D_UP 114 http://www.broadinstitute.org/gsea/msigdb/cards/ICHIBA_GRAFT_VERSUS_HOST_DISEASE_35D_UP.html -0.36403 -1.3082 0.1162 1 1 0.342 0.163 0.29 1 0.929
31
+ RODWELL_AGING_KIDNEY_UP 193 http://www.broadinstitute.org/gsea/msigdb/cards/RODWELL_AGING_KIDNEY_UP.html -0.31085 -1.3067 0.1122 1 1 0.311 0.185 0.258 1 0.925
32
+ KANG_DOXORUBICIN_RESISTANCE_DN 15 http://www.broadinstitute.org/gsea/msigdb/cards/KANG_DOXORUBICIN_RESISTANCE_DN.html -0.55193 -1.3042 0.1772 1 1 0.667 0.235 0.511 1 0.92
33
+ TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_3D_UP 68 http://www.broadinstitute.org/gsea/msigdb/cards/TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_3D_UP.html -0.4842 -1.3036 0.2429 1 1 0.441 0.175 0.367 1 0.912
34
+ YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_15 22 http://www.broadinstitute.org/gsea/msigdb/cards/YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_15.html -0.46061 -1.3023 0.145 1 1 0.364 0.128 0.318 1 0.907
35
+ REACTOME_RHO_GTPASE_CYCLE 75 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_RHO_GTPASE_CYCLE.html -0.38429 -1.3023 0.1699 1 1 0.347 0.147 0.298 1 0.895
36
+ BOHN_PRIMARY_IMMUNODEFICIENCY_SYNDROM_DN 16 http://www.broadinstitute.org/gsea/msigdb/cards/BOHN_PRIMARY_IMMUNODEFICIENCY_SYNDROM_DN.html -0.46516 -1.3022 0.1375 1 1 0.25 0.0857 0.229 1 0.877
37
+ KEGG_SYSTEMIC_LUPUS_ERYTHEMATOSUS 37 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_SYSTEMIC_LUPUS_ERYTHEMATOSUS.html -0.38654 -1.2994 0.1348 1 1 0.351 0.112 0.313 1 0.871
38
+ VALK_AML_WITH_FLT3_ITD 17 http://www.broadinstitute.org/gsea/msigdb/cards/VALK_AML_WITH_FLT3_ITD.html -0.47276 -1.2976 0.1777 1 1 0.412 0.123 0.362 1 0.862
39
+ REACTOME_CHOLESTEROL_BIOSYNTHESIS 16 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CHOLESTEROL_BIOSYNTHESIS.html -0.49062 -1.2802 0.1944 1 1 0.375 0.12 0.33 1 0.901
40
+ MARKS_HDAC_TARGETS_UP 15 http://www.broadinstitute.org/gsea/msigdb/cards/MARKS_HDAC_TARGETS_UP.html -0.53328 -1.2785 0.2205 1 1 0.333 0.0981 0.301 1 0.894
41
+ RASHI_RESPONSE_TO_IONIZING_RADIATION_6 72 http://www.broadinstitute.org/gsea/msigdb/cards/RASHI_RESPONSE_TO_IONIZING_RADIATION_6.html -0.30979 -1.2733 0.09294 1 1 0.292 0.158 0.248 1 0.897
42
+ MOSERLE_IFNA_RESPONSE 17 http://www.broadinstitute.org/gsea/msigdb/cards/MOSERLE_IFNA_RESPONSE.html -0.69394 -1.2562 0.2809 1 1 0.647 0.138 0.559 1 0.923
43
+ KEGG_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY 66 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY.html -0.35722 -1.2442 0.2417 1 1 0.333 0.199 0.269 1 0.937
44
+ MCMURRAY_TP53_HRAS_COOPERATION_RESPONSE_DN 25 http://www.broadinstitute.org/gsea/msigdb/cards/MCMURRAY_TP53_HRAS_COOPERATION_RESPONSE_DN.html -0.46484 -1.2439 0.1983 1 1 0.32 0.106 0.287 1 0.929
45
+ KAYO_AGING_MUSCLE_UP 86 http://www.broadinstitute.org/gsea/msigdb/cards/KAYO_AGING_MUSCLE_UP.html -0.28824 -1.2418 0.1392 1 1 0.174 0.0871 0.161 1 0.924
46
+ REACTOME_STEROID_METABOLISM 26 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_STEROID_METABOLISM.html -0.4322 -1.2391 0.2412 1 1 0.346 0.12 0.305 1 0.926
47
+ TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_HSC_DN 113 http://www.broadinstitute.org/gsea/msigdb/cards/TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_HSC_DN.html -0.31049 -1.239 0.1849 1 1 0.363 0.206 0.291 1 0.917
48
+ MARTORIATI_MDM4_TARGETS_NEUROEPITHELIUM_DN 38 http://www.broadinstitute.org/gsea/msigdb/cards/MARTORIATI_MDM4_TARGETS_NEUROEPITHELIUM_DN.html -0.35678 -1.2327 0.1757 1 1 0.263 0.0963 0.239 1 0.923
49
+ ODONNELL_TARGETS_OF_MYC_AND_TFRC_UP 45 http://www.broadinstitute.org/gsea/msigdb/cards/ODONNELL_TARGETS_OF_MYC_AND_TFRC_UP.html -0.3808 -1.2286 0.2115 1 1 0.333 0.175 0.276 1 0.927
50
+ KEGG_LYSOSOME 106 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_LYSOSOME.html -0.3391 -1.2272 0.1925 1 1 0.33 0.223 0.259 1 0.919
51
+ REACTOME_PI3K_CASCADE 15 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_PI3K_CASCADE.html -0.5081 -1.2271 0.253 1 1 0.133 0.0179 0.131 1 0.913
52
+ REACTOME_CELL_DEATH_SIGNALLING_VIA_NRAGE_NRIF_AND_NADE 39 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CELL_DEATH_SIGNALLING_VIA_NRAGE_NRIF_AND_NADE.html -0.36555 -1.2229 0.2187 1 1 0.308 0.147 0.263 1 0.916
53
+ GAUSSMANN_MLL_AF4_FUSION_TARGETS_F_UP 60 http://www.broadinstitute.org/gsea/msigdb/cards/GAUSSMANN_MLL_AF4_FUSION_TARGETS_F_UP.html -0.34453 -1.2215 0.166 1 1 0.317 0.173 0.264 1 0.912
54
+ BROWNE_HCMV_INFECTION_30MIN_UP 23 http://www.broadinstitute.org/gsea/msigdb/cards/BROWNE_HCMV_INFECTION_30MIN_UP.html -0.36049 -1.2212 0.1627 1 1 0.261 0.0963 0.236 1 0.905
55
+ GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_GREEN_DN 18 http://www.broadinstitute.org/gsea/msigdb/cards/GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_GREEN_DN.html -0.3991 -1.217 0.222 1 1 0.389 0.17 0.323 1 0.908
56
+ CERVERA_SDHB_TARGETS_1_UP 38 http://www.broadinstitute.org/gsea/msigdb/cards/CERVERA_SDHB_TARGETS_1_UP.html -0.40071 -1.2137 0.2329 1 1 0.316 0.119 0.279 1 0.906
57
+ REACTOME_GENES_INVOLVED_IN_APOPTOTIC_CLEAVAGE_OF_CELLULAR_PROTEINS 23 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_GENES_INVOLVED_IN_APOPTOTIC_CLEAVAGE_OF_CELLULAR_PROTEINS.html -0.38846 -1.2105 0.2495 1 1 0.217 0.08 0.2 1 0.906
58
+ MCCLUNG_DELTA_FOSB_TARGETS_2WK 18 http://www.broadinstitute.org/gsea/msigdb/cards/MCCLUNG_DELTA_FOSB_TARGETS_2WK.html -0.40726 -1.2079 0.2296 1 1 0.667 0.233 0.512 1 0.904
59
+ BROWNE_HCMV_INFECTION_14HR_DN 163 http://www.broadinstitute.org/gsea/msigdb/cards/BROWNE_HCMV_INFECTION_14HR_DN.html -0.27324 -1.2071 0.1592 1 1 0.209 0.128 0.185 1 0.897
60
+ RADAEVA_RESPONSE_TO_IFNA1_UP 26 http://www.broadinstitute.org/gsea/msigdb/cards/RADAEVA_RESPONSE_TO_IFNA1_UP.html -0.46498 -1.2038 0.303 1 1 0.577 0.269 0.423 1 0.898
61
+ CHEBOTAEV_GR_TARGETS_UP 33 http://www.broadinstitute.org/gsea/msigdb/cards/CHEBOTAEV_GR_TARGETS_UP.html -0.36404 -1.2035 0.215 1 1 0.212 0.0744 0.197 1 0.897
62
+ LENAOUR_DENDRITIC_CELL_MATURATION_UP 58 http://www.broadinstitute.org/gsea/msigdb/cards/LENAOUR_DENDRITIC_CELL_MATURATION_UP.html -0.32339 -1.1971 0.1809 1 1 0.328 0.183 0.269 1 0.898
63
+ SCHEIDEREIT_IKK_INTERACTING_PROTEINS 20 http://www.broadinstitute.org/gsea/msigdb/cards/SCHEIDEREIT_IKK_INTERACTING_PROTEINS.html -0.37738 -1.1941 0.2048 1 1 0.25 0.0597 0.236 1 0.897
64
+ REACTOME_REGULATION_OF_LIPID_METABOLISM_BY_PEROXISOME_PROLIFERATOR_ACTIVATED_RECEPTOR_ALPHA 39 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_REGULATION_OF_LIPID_METABOLISM_BY_PEROXISOME_PROLIFERATOR_ACTIVATED_RECEPTOR_ALPHA.html -0.40138 -1.1941 0.2763 1 1 0.487 0.283 0.351 1 0.901
65
+ SEITZ_NEOPLASTIC_TRANSFORMATION_BY_8P_DELETION_UP 36 http://www.broadinstitute.org/gsea/msigdb/cards/SEITZ_NEOPLASTIC_TRANSFORMATION_BY_8P_DELETION_UP.html -0.47249 -1.1913 0.297 1 1 0.472 0.207 0.376 1 0.898
66
+ KEGG_RIG_I_LIKE_RECEPTOR_SIGNALING_PATHWAY 44 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_RIG_I_LIKE_RECEPTOR_SIGNALING_PATHWAY.html -0.31972 -1.1901 0.2433 1 1 0.227 0.105 0.204 1 0.895
67
+ CHANG_CORE_SERUM_RESPONSE_DN 20 http://www.broadinstitute.org/gsea/msigdb/cards/CHANG_CORE_SERUM_RESPONSE_DN.html -0.38167 -1.19 0.2427 1 1 0.3 0.134 0.26 1 0.889
68
+ PETRETTO_CARDIAC_HYPERTROPHY 19 http://www.broadinstitute.org/gsea/msigdb/cards/PETRETTO_CARDIAC_HYPERTROPHY.html -0.45654 -1.1896 0.266 1 1 0.211 0.0375 0.203 1 0.885
69
+ MARKEY_RB1_ACUTE_LOF_UP 201 http://www.broadinstitute.org/gsea/msigdb/cards/MARKEY_RB1_ACUTE_LOF_UP.html -0.35021 -1.1873 0.2519 1 1 0.308 0.149 0.268 1 0.882
70
+ WOTTON_RUNX_TARGETS_DN 18 http://www.broadinstitute.org/gsea/msigdb/cards/WOTTON_RUNX_TARGETS_DN.html -0.44856 -1.1856 0.2484 1 1 0.333 0.0671 0.312 1 0.877
71
+ REACTOME_GLUCONEOGENESIS 23 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_GLUCONEOGENESIS.html -0.43791 -1.1852 0.3022 1 1 0.217 0.0386 0.209 1 0.869
72
+ MORI_LARGE_PRE_BII_LYMPHOCYTE_DN 38 http://www.broadinstitute.org/gsea/msigdb/cards/MORI_LARGE_PRE_BII_LYMPHOCYTE_DN.html -0.34908 -1.1851 0.2399 1 1 0.316 0.172 0.262 1 0.859
73
+ TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_10D_UP 69 http://www.broadinstitute.org/gsea/msigdb/cards/TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_10D_UP.html -0.39034 -1.1819 0.2791 1 1 0.406 0.177 0.337 1 0.862
74
+ KAAB_HEART_ATRIUM_VS_VENTRICLE_UP 129 http://www.broadinstitute.org/gsea/msigdb/cards/KAAB_HEART_ATRIUM_VS_VENTRICLE_UP.html -0.26836 -1.1807 0.1715 1 1 0.326 0.184 0.269 1 0.855
75
+ REACTOME_NRAGE_SIGNALS_DEATH_THROUGH_JNK 28 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_NRAGE_SIGNALS_DEATH_THROUGH_JNK.html -0.44438 -1.1786 0.2992 1 1 0.393 0.147 0.336 1 0.851
76
+ RIZ_ERYTHROID_DIFFERENTIATION_HBZ 16 http://www.broadinstitute.org/gsea/msigdb/cards/RIZ_ERYTHROID_DIFFERENTIATION_HBZ.html -0.47299 -1.1781 0.3027 1 1 0.25 0.0921 0.227 1 0.843
77
+ SANA_RESPONSE_TO_IFNG_UP 38 http://www.broadinstitute.org/gsea/msigdb/cards/SANA_RESPONSE_TO_IFNG_UP.html -0.44856 -1.1726 0.3136 1 1 0.421 0.194 0.341 1 0.855
78
+ MULLIGHAN_MLL_SIGNATURE_1_UP 267 http://www.broadinstitute.org/gsea/msigdb/cards/MULLIGHAN_MLL_SIGNATURE_1_UP.html -0.25203 -1.1717 0.2259 1 1 0.206 0.135 0.183 1 0.846
79
+ BIOCARTA_G2_PATHWAY 17 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_G2_PATHWAY.html -0.40211 -1.1709 0.2664 1 1 0.235 0.0847 0.216 1 0.84
80
+ ROZANOV_MMP14_TARGETS_UP 138 http://www.broadinstitute.org/gsea/msigdb/cards/ROZANOV_MMP14_TARGETS_UP.html -0.29256 -1.1698 0.2264 1 1 0.246 0.145 0.214 1 0.833
81
+ ROY_WOUND_BLOOD_VESSEL_UP 26 http://www.broadinstitute.org/gsea/msigdb/cards/ROY_WOUND_BLOOD_VESSEL_UP.html -0.38913 -1.168 0.2879 1 1 0.385 0.151 0.328 1 0.834
82
+ KIM_MYC_AMPLIFICATION_TARGETS_DN 29 http://www.broadinstitute.org/gsea/msigdb/cards/KIM_MYC_AMPLIFICATION_TARGETS_DN.html -0.37862 -1.1631 0.2812 1 1 0.345 0.198 0.277 1 0.84
83
+ MUELLER_COMMON_TARGETS_OF_AML_FUSIONS_DN 16 http://www.broadinstitute.org/gsea/msigdb/cards/MUELLER_COMMON_TARGETS_OF_AML_FUSIONS_DN.html -0.38083 -1.1629 0.2649 1 1 0.312 0.105 0.28 1 0.835
84
+ KEGG_GLYCEROLIPID_METABOLISM 28 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_GLYCEROLIPID_METABOLISM.html -0.35778 -1.1608 0.2762 1 1 0.214 0.037 0.207 1 0.832
85
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+ ROSS_AML_WITH_PML_RARA_FUSION 35 http://www.broadinstitute.org/gsea/msigdb/cards/ROSS_AML_WITH_PML_RARA_FUSION.html -0.34956 -1.1566 0.2614 1 1 0.343 0.179 0.282 1 0.811
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+ APPEL_IMATINIB_RESPONSE 29 http://www.broadinstitute.org/gsea/msigdb/cards/APPEL_IMATINIB_RESPONSE.html -0.38719 -1.1502 0.2808 1 1 0.379 0.214 0.299 1 0.825
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+ KEGG_CARDIAC_MUSCLE_CONTRACTION 37 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_CARDIAC_MUSCLE_CONTRACTION.html -0.40369 -1.1483 0.3133 1 1 0.595 0.312 0.411 1 0.814
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102
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103
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106
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108
+ TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_8D_UP 51 http://www.broadinstitute.org/gsea/msigdb/cards/TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_8D_UP.html -0.36572 -1.1041 0.345 1 1 0.431 0.175 0.358 1 0.825
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110
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111
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112
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113
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114
+ BIOCARTA_RHO_PATHWAY 28 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_RHO_PATHWAY.html -0.32956 -1.0865 0.3734 1 1 0.393 0.21 0.311 1 0.843
115
+ MCMURRAY_TP53_HRAS_COOPERATION_RESPONSE_UP 16 http://www.broadinstitute.org/gsea/msigdb/cards/MCMURRAY_TP53_HRAS_COOPERATION_RESPONSE_UP.html -0.40404 -1.084 0.3333 1 1 0.375 0.19 0.304 1 0.843
116
+ SASSON_RESPONSE_TO_FORSKOLIN_UP 48 http://www.broadinstitute.org/gsea/msigdb/cards/SASSON_RESPONSE_TO_FORSKOLIN_UP.html -0.29645 -1.081 0.3241 1 1 0.417 0.222 0.326 1 0.846
117
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118
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119
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120
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121
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122
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123
+ PAPASPYRIDONOS_UNSTABLE_ATEROSCLEROTIC_PLAQUE_UP 39 http://www.broadinstitute.org/gsea/msigdb/cards/PAPASPYRIDONOS_UNSTABLE_ATEROSCLEROTIC_PLAQUE_UP.html -0.29176 -1.0643 0.3547 1 1 0.385 0.198 0.31 1 0.853
124
+ DASU_IL6_SIGNALING_SCAR_UP 18 http://www.broadinstitute.org/gsea/msigdb/cards/DASU_IL6_SIGNALING_SCAR_UP.html -0.40089 -1.0634 0.3996 1 1 0.389 0.209 0.308 1 0.848
125
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126
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127
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128
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129
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130
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131
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132
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133
+ YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_6 41 http://www.broadinstitute.org/gsea/msigdb/cards/YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_6.html -0.27639 -1.0469 0.3735 1 1 0.39 0.218 0.307 1 0.844
134
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135
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136
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137
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138
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139
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140
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141
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142
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143
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144
+ REACTOME_DOWNSTREAM_SIGNALING_OF_ACTIVATED_FGFR 19 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DOWNSTREAM_SIGNALING_OF_ACTIVATED_FGFR.html -0.41225 -1.0251 0.4538 1 1 0.105 0.0179 0.104 1 0.854
145
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146
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147
+ WU_HBX_TARGETS_1_DN 17 http://www.broadinstitute.org/gsea/msigdb/cards/WU_HBX_TARGETS_1_DN.html -0.33601 -1.0168 0.4532 1 1 0.235 0.08 0.217 1 0.862
148
+ KIM_LRRC3B_TARGETS 18 http://www.broadinstitute.org/gsea/msigdb/cards/KIM_LRRC3B_TARGETS.html -0.4135 -1.0162 0.4497 1 1 0.389 0.185 0.318 1 0.854
149
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150
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151
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152
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153
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154
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155
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156
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157
+ KIM_RESPONSE_TO_TSA_AND_DECITABINE_UP 46 http://www.broadinstitute.org/gsea/msigdb/cards/KIM_RESPONSE_TO_TSA_AND_DECITABINE_UP.html -0.34355 -1.0056 0.458 1 1 0.217 0.0975 0.197 1 0.84
158
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159
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160
+ HELLER_SILENCED_BY_METHYLATION_UP 122 http://www.broadinstitute.org/gsea/msigdb/cards/HELLER_SILENCED_BY_METHYLATION_UP.html -0.28185 -1.0034 0.4492 1 1 0.311 0.18 0.259 1 0.832
161
+ RODWELL_AGING_KIDNEY_NO_BLOOD_UP 73 http://www.broadinstitute.org/gsea/msigdb/cards/RODWELL_AGING_KIDNEY_NO_BLOOD_UP.html -0.2437 -1.0028 0.4477 1 1 0.301 0.191 0.246 1 0.828
162
+ KIM_MYCN_AMPLIFICATION_TARGETS_UP 35 http://www.broadinstitute.org/gsea/msigdb/cards/KIM_MYCN_AMPLIFICATION_TARGETS_UP.html -0.26607 -1.0018 0.4673 1 1 0.229 0.134 0.199 1 0.825
163
+ GOZGIT_ESR1_TARGETS_UP 63 http://www.broadinstitute.org/gsea/msigdb/cards/GOZGIT_ESR1_TARGETS_UP.html -0.25767 -1.0008 0.4896 1 1 0.206 0.0963 0.188 1 0.819
164
+ KEGG_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION 36 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION.html -0.32643 -1.0003 0.4608 1 1 0.333 0.177 0.275 1 0.82
165
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166
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167
+ GRABARCZYK_BCL11B_TARGETS_DN 29 http://www.broadinstitute.org/gsea/msigdb/cards/GRABARCZYK_BCL11B_TARGETS_DN.html -0.30032 -0.99937 0.4748 1 1 0.345 0.194 0.279 1 0.807
168
+ REACTOME_TOLL_LIKE_RECEPTOR_4_CASCADE 25 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TOLL_LIKE_RECEPTOR_4_CASCADE.html -0.33528 -0.99656 0.4852 1 1 0.32 0.15 0.273 1 0.814
169
+ KANNAN_TP53_TARGETS_UP 33 http://www.broadinstitute.org/gsea/msigdb/cards/KANNAN_TP53_TARGETS_UP.html -0.32679 -0.99634 0.4477 1 1 0.333 0.156 0.282 1 0.808
170
+ SENGUPTA_EBNA1_ANTICORRELATED 79 http://www.broadinstitute.org/gsea/msigdb/cards/SENGUPTA_EBNA1_ANTICORRELATED.html -0.28445 -0.99471 0.4474 1 1 0.278 0.157 0.237 1 0.807
171
+ KEGG_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION 68 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION.html -0.28942 -0.99323 0.4427 1 1 0.25 0.149 0.214 1 0.806
172
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293
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294
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295
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296
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298
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299
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301
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302
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303
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304
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306
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308
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309
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310
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311
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312
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313
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314
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316
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317
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318
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319
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320
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321
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322
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324
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326
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327
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328
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329
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330
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331
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332
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333
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334
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335
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336
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337
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338
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339
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340
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341
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342
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343
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344
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345
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346
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347
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348
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349
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383
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385
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386
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399
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400
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401
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403
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404
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405
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408
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409
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410
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411
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412
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413
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414
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415
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416
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417
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418
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419
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420
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421
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422
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423
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424
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425
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426
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427
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428
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429
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430
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431
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432
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433
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434
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435
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436
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437
+ HAHTOLA_MYCOSIS_FUNGOIDES_SKIN_DN 20 http://www.broadinstitute.org/gsea/msigdb/cards/HAHTOLA_MYCOSIS_FUNGOIDES_SKIN_DN.html -0.19475 -0.59671 0.9407 1 1 0.2 0.134 0.174 1 0.712
438
+ HONMA_DOCETAXEL_RESISTANCE 26 http://www.broadinstitute.org/gsea/msigdb/cards/HONMA_DOCETAXEL_RESISTANCE.html -0.22726 -0.5943 0.8774 1 1 0.192 0.121 0.169 1 0.709
439
+ URS_ADIPOCYTE_DIFFERENTIATION_DN 16 http://www.broadinstitute.org/gsea/msigdb/cards/URS_ADIPOCYTE_DIFFERENTIATION_DN.html -0.21162 -0.59267 0.9415 1 1 0.125 0.0489 0.119 1 0.702
440
+ REACTOME_CLATHRIN_DERIVED_VESICLE_BUDDING 48 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CLATHRIN_DERIVED_VESICLE_BUDDING.html -0.15804 -0.59141 0.9624 1 1 0.25 0.242 0.19 1 0.686
441
+ STARK_PREFRONTAL_CORTEX_22Q11_DELETION_UP 117 http://www.broadinstitute.org/gsea/msigdb/cards/STARK_PREFRONTAL_CORTEX_22Q11_DELETION_UP.html -0.19995 -0.58421 0.8618 1 1 0.222 0.165 0.188 1 0.717
442
+ KEGG_INOSITOL_PHOSPHATE_METABOLISM 43 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_INOSITOL_PHOSPHATE_METABOLISM.html -0.19975 -0.58189 0.9303 1 1 0.186 0.129 0.163 1 0.711
443
+ TAKAO_RESPONSE_TO_UVB_RADIATION_UP 59 http://www.broadinstitute.org/gsea/msigdb/cards/TAKAO_RESPONSE_TO_UVB_RADIATION_UP.html -0.21638 -0.58184 0.8453 1 1 0.424 0.256 0.317 1 0.686
444
+ DORSAM_HOXA9_TARGETS_DN 21 http://www.broadinstitute.org/gsea/msigdb/cards/DORSAM_HOXA9_TARGETS_DN.html -0.20159 -0.58026 0.9486 1 1 0.19 0.126 0.167 1 0.669
445
+ HANN_RESISTANCE_TO_BCL2_INHIBITOR_DN 17 http://www.broadinstitute.org/gsea/msigdb/cards/HANN_RESISTANCE_TO_BCL2_INHIBITOR_DN.html -0.20752 -0.57624 0.9702 1 1 0.118 0.0334 0.114 1 0.68
446
+ REACTOME_TELOMERE_MAINTENANCE 36 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_TELOMERE_MAINTENANCE.html -0.21149 -0.57496 0.9112 1 1 0.333 0.221 0.261 1 0.653
447
+ YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_13 154 http://www.broadinstitute.org/gsea/msigdb/cards/YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_13.html -0.2251 -0.56871 0.8359 1 1 0.383 0.272 0.283 1 0.686
448
+ COLLIS_PRKDC_SUBSTRATES 15 http://www.broadinstitute.org/gsea/msigdb/cards/COLLIS_PRKDC_SUBSTRATES.html -0.24101 -0.56768 0.9191 1 1 0.333 0.224 0.259 1 0.659
449
+ KEGG_MISMATCH_REPAIR 21 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_MISMATCH_REPAIR.html -0.22166 -0.56312 0.927 1 1 0.381 0.243 0.289 1 0.668
450
+ KAYO_AGING_MUSCLE_DN 74 http://www.broadinstitute.org/gsea/msigdb/cards/KAYO_AGING_MUSCLE_DN.html -0.15112 -0.56304 0.9941 1 1 0.311 0.254 0.234 1 0.633
451
+ SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP 386 http://www.broadinstitute.org/gsea/msigdb/cards/SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP.html -0.14472 -0.55933 0.9792 1 1 0.244 0.219 0.198 1 0.63
452
+ SAMOLS_TARGETS_OF_KHSV_MIRNAS_DN 30 http://www.broadinstitute.org/gsea/msigdb/cards/SAMOLS_TARGETS_OF_KHSV_MIRNAS_DN.html -0.17644 -0.55891 0.976 1 1 0.167 0.126 0.146 1 0.598
453
+ REACTOME_MAP_KINASES_ACTIVATION_IN_TLR_CASCADE 40 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MAP_KINASES_ACTIVATION_IN_TLR_CASCADE.html -0.17253 -0.55862 0.9528 0.9982 1 0.15 0.0982 0.136 1 0.559
454
+ MULLIGHAN_NPM1_MUTATED_SIGNATURE_1_UP 156 http://www.broadinstitute.org/gsea/msigdb/cards/MULLIGHAN_NPM1_MUTATED_SIGNATURE_1_UP.html -0.13184 -0.54413 0.998 1 1 0.212 0.203 0.171 1 0.657
455
+ LEE_EARLY_T_LYMPHOCYTE_UP 41 http://www.broadinstitute.org/gsea/msigdb/cards/LEE_EARLY_T_LYMPHOCYTE_UP.html -0.1983 -0.54074 0.9397 1 1 0.0976 0.063 0.0918 1 0.658
456
+ MOOTHA_FFA_OXYDATION 21 http://www.broadinstitute.org/gsea/msigdb/cards/MOOTHA_FFA_OXYDATION.html -0.19541 -0.53481 0.9295 1 1 0.524 0.33 0.352 1 0.666
457
+ BIOCARTA_PPARA_PATHWAY 40 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_PPARA_PATHWAY.html -0.17833 -0.52667 0.9502 1 1 0.3 0.231 0.232 1 0.695
458
+ ELLWOOD_MYC_TARGETS_DN 29 http://www.broadinstitute.org/gsea/msigdb/cards/ELLWOOD_MYC_TARGETS_DN.html -0.1686 -0.52475 0.967 1 1 0.31 0.251 0.233 1 0.672
459
+ DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_DN 155 http://www.broadinstitute.org/gsea/msigdb/cards/DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_DN.html -0.15438 -0.52133 0.9842 1 1 0.303 0.236 0.236 1 0.651
460
+ LANDIS_ERBB2_BREAST_PRENEOPLASTIC_DN 42 http://www.broadinstitute.org/gsea/msigdb/cards/LANDIS_ERBB2_BREAST_PRENEOPLASTIC_DN.html -0.1671 -0.5208 0.988 0.99988 1 0.19 0.163 0.16 1 0.6
461
+ PELLICCIOTTA_HDAC_IN_ANTIGEN_PRESENTATION_UP 57 http://www.broadinstitute.org/gsea/msigdb/cards/PELLICCIOTTA_HDAC_IN_ANTIGEN_PRESENTATION_UP.html -0.17363 -0.51932 0.941 0.99828 1 0.211 0.185 0.173 1 0.549
462
+ YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_5 17 http://www.broadinstitute.org/gsea/msigdb/cards/YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_5.html -0.20686 -0.51791 0.9763 0.99662 1 0.353 0.196 0.284 0.99996 0.5
463
+ REACTOME_DIABETES_PATHWAYS 263 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_DIABETES_PATHWAYS.html -0.15875 -0.50268 0.9047 0.99969 1 0.274 0.244 0.213 1 0.589
464
+ REACTOME_MEMBRANE_TRAFFICKING 64 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_MEMBRANE_TRAFFICKING.html -0.13291 -0.50069 0.9896 0.99816 1 0.234 0.242 0.179 1 0.539
465
+ BIOCARTA_PROTEASOME_PATHWAY 18 http://www.broadinstitute.org/gsea/msigdb/cards/BIOCARTA_PROTEASOME_PATHWAY.html -0.23479 -0.49939 0.9093 0.99647 1 1 0.766 0.235 0.99925 0.469
466
+ CREIGHTON_AKT1_SIGNALING_VIA_MTOR_DN 19 http://www.broadinstitute.org/gsea/msigdb/cards/CREIGHTON_AKT1_SIGNALING_VIA_MTOR_DN.html -0.20387 -0.48923 0.958 0.99738 1 0.263 0.175 0.218 0.99987 0.493
467
+ KEGG_HEDGEHOG_SIGNALING_PATHWAY 17 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_HEDGEHOG_SIGNALING_PATHWAY.html -0.18872 -0.48356 0.9711 0.9968 1 1 0.812 0.189 0.99915 0.457
468
+ REACTOME_CITRIC_ACID_CYCLE 18 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_CITRIC_ACID_CYCLE.html -0.19695 -0.45837 0.9557 1 1 0.222 0.163 0.186 1 0.63
469
+ WONG_MITOCHONDRIA_GENE_MODULE 181 http://www.broadinstitute.org/gsea/msigdb/cards/WONG_MITOCHONDRIA_GENE_MODULE.html -0.17773 -0.45781 0.9155 0.99839 1 0.359 0.272 0.266 1 0.511
470
+ DAZARD_UV_RESPONSE_CLUSTER_G6 85 http://www.broadinstitute.org/gsea/msigdb/cards/DAZARD_UV_RESPONSE_CLUSTER_G6.html -0.15963 -0.45635 0.9764 0.99653 1 0.0941 0.0734 0.088 0.99835 0.405
471
+ SESTO_RESPONSE_TO_UV_C5 38 http://www.broadinstitute.org/gsea/msigdb/cards/SESTO_RESPONSE_TO_UV_C5.html -0.17108 -0.43971 0.963 0.99731 1 0.342 0.285 0.246 0.99907 0.429
472
+ KEGG_NOTCH_SIGNALING_PATHWAY 33 http://www.broadinstitute.org/gsea/msigdb/cards/KEGG_NOTCH_SIGNALING_PATHWAY.html -0.13481 -0.39301 0.994 1 1 0.212 0.203 0.17 1 0.669
473
+ SONG_TARGETS_OF_IE86_CMV_PROTEIN 37 http://www.broadinstitute.org/gsea/msigdb/cards/SONG_TARGETS_OF_IE86_CMV_PROTEIN.html -0.13419 -0.36609 0.9944 1 1 0.243 0.246 0.184 1 0.648
474
+ REACTOME_SIGNALING_BY_EGFR 41 http://www.broadinstitute.org/gsea/msigdb/cards/REACTOME_SIGNALING_BY_EGFR.html -0.10424 -0.35717 0.996 0.99834 1 0.0244 0.0125 0.0242 0.99898 0.438