bio-publisci 0.0.6 → 0.0.7

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Files changed (84) hide show
  1. checksums.yaml +4 -4
  2. data/Gemfile +1 -0
  3. data/Rakefile +1 -1
  4. data/examples/prov_dsl.prov +2 -1
  5. data/examples/safe_gen.rb +7 -0
  6. data/examples/visualization/primer.prov +66 -0
  7. data/examples/visualization/prov_viz.rb +140 -0
  8. data/examples/visualization/viz.rb +35 -0
  9. data/features/metadata_steps.rb +2 -4
  10. data/features/orm_steps.rb +4 -4
  11. data/features/reader_steps.rb +1 -1
  12. data/features/store_steps.rb +1 -1
  13. data/features/writer.feature +1 -1
  14. data/features/writer_steps.rb +1 -1
  15. data/lib/bio-publisci.rb +10 -2
  16. data/lib/bio-publisci/analyzer.rb +4 -4
  17. data/lib/bio-publisci/{spira.rb → datacube_model.rb} +4 -5
  18. data/lib/bio-publisci/dataset/ORM/data_cube_orm.rb +12 -12
  19. data/lib/bio-publisci/dataset/ORM/observation.rb +1 -1
  20. data/lib/bio-publisci/dataset/configuration.rb +31 -0
  21. data/lib/bio-publisci/dataset/data_cube.rb +28 -17
  22. data/lib/bio-publisci/dataset/dataset.rb +11 -0
  23. data/lib/bio-publisci/dataset/dataset_for.rb +19 -9
  24. data/lib/bio-publisci/dataset/interactive.rb +1 -1
  25. data/lib/bio-publisci/dsl/config.rb +34 -0
  26. data/lib/bio-publisci/dsl/dataset_dsl.rb +91 -0
  27. data/lib/bio-publisci/dsl/dsl.rb +69 -0
  28. data/lib/bio-publisci/dsl/metadata_dsl.rb +85 -0
  29. data/lib/bio-publisci/{metadata/prov/dsl.rb → dsl/prov_dsl.rb} +30 -6
  30. data/lib/bio-publisci/metadata/generator.rb +323 -0
  31. data/lib/bio-publisci/metadata/metadata.rb +3 -314
  32. data/lib/bio-publisci/metadata/prov/activity.rb +3 -1
  33. data/lib/bio-publisci/metadata/prov/agent.rb +1 -1
  34. data/lib/bio-publisci/metadata/prov/association.rb +2 -2
  35. data/lib/bio-publisci/metadata/prov/config.rb +34 -0
  36. data/lib/bio-publisci/metadata/prov/derivation.rb +7 -2
  37. data/lib/bio-publisci/metadata/prov/element.rb +2 -2
  38. data/lib/bio-publisci/metadata/prov/entity.rb +1 -22
  39. data/lib/bio-publisci/metadata/prov/model/prov_models.rb +8 -9
  40. data/lib/bio-publisci/metadata/prov/plan.rb +1 -1
  41. data/lib/bio-publisci/metadata/prov/prov.rb +23 -21
  42. data/lib/bio-publisci/metadata/prov/role.rb +1 -1
  43. data/lib/bio-publisci/metadata/prov/usage.rb +1 -1
  44. data/lib/bio-publisci/metadata/publisher.rb +25 -0
  45. data/lib/bio-publisci/mixins/dereferencable.rb +1 -1
  46. data/lib/bio-publisci/mixins/registry.rb +27 -0
  47. data/lib/bio-publisci/output.rb +1 -1
  48. data/lib/bio-publisci/parser.rb +1 -1
  49. data/lib/bio-publisci/query/query_helper.rb +14 -14
  50. data/lib/bio-publisci/r_client.rb +5 -5
  51. data/lib/bio-publisci/readers/arff.rb +5 -5
  52. data/lib/bio-publisci/readers/csv.rb +3 -3
  53. data/lib/bio-publisci/readers/dataframe.rb +3 -3
  54. data/lib/bio-publisci/readers/r_cross.rb +4 -4
  55. data/lib/bio-publisci/readers/r_matrix.rb +3 -3
  56. data/lib/bio-publisci/store.rb +3 -3
  57. data/lib/bio-publisci/writers/arff.rb +6 -6
  58. data/lib/bio-publisci/writers/dataframe.rb +5 -5
  59. data/scripts/islet_mlratio.rb +1 -1
  60. data/scripts/scan_islet.rb +1 -1
  61. data/scripts/update_reference.rb +2 -2
  62. data/spec/ORM/data_cube_orm_spec.rb +2 -2
  63. data/spec/ORM/prov_model_spec.rb +19 -0
  64. data/spec/analyzer_spec.rb +7 -7
  65. data/spec/data_cube_spec.rb +13 -13
  66. data/spec/dataset_for_spec.rb +11 -4
  67. data/spec/dsl_spec.rb +90 -0
  68. data/spec/generators/csv_spec.rb +4 -4
  69. data/spec/generators/dataframe_spec.rb +6 -6
  70. data/spec/generators/r_cross_spec.rb +2 -2
  71. data/spec/generators/r_matrix_spec.rb +2 -2
  72. data/spec/metadata/metadata_dsl_spec.rb +68 -0
  73. data/spec/prov/activity_spec.rb +4 -4
  74. data/spec/prov/agent_spec.rb +3 -4
  75. data/spec/prov/association_spec.rb +1 -2
  76. data/spec/prov/config_spec.rb +28 -0
  77. data/spec/prov/derivation_spec.rb +30 -0
  78. data/spec/prov/entity_spec.rb +3 -4
  79. data/spec/prov/role_spec.rb +1 -2
  80. data/spec/prov/usage_spec.rb +1 -2
  81. data/spec/r_builder_spec.rb +3 -3
  82. data/spec/turtle/bacon +20 -4
  83. data/spec/turtle/reference +20 -4
  84. metadata +37 -4
@@ -0,0 +1,68 @@
1
+ require_relative '../../lib/bio-publisci.rb'
2
+
3
+ describe PubliSci::Metadata::DSL do
4
+ include PubliSci::Metadata::DSL
5
+
6
+ before(:each) do
7
+ PubliSci::Prov.registry.clear
8
+ end
9
+
10
+ it "can generate basic metadata as n3" do
11
+ dataset 'bacon'
12
+ title 'Bacon Data'
13
+ description 'a dataset about bacon'
14
+ creator 'Will'
15
+ topic 'Delicious Bacon'
16
+ str = generate_n3
17
+ str[/rdfs:label "(.+)";/,1].should == "Bacon Data"
18
+ str[/dct:creator "(.+)";/,1].should == "Will"
19
+ str[/dct:subject "(.+)";/,1].should == "Delicious Bacon"
20
+ str[/dct:description "(.+)";/,1].should == "a dataset about bacon"
21
+ str[/dct:issued "(.+)"\^\^xsd:date;/,1].should == Time.now.strftime("%Y-%m-%d")
22
+ end
23
+
24
+ it "can add additional information about publisher" do
25
+ dataset 'bacon'
26
+ p = publisher do
27
+ label "pub"
28
+ uri "http://some-organization.com"
29
+ end
30
+
31
+ p.label.should == "pub"
32
+ generate_n3[%r{dct:publisher <(.+)> .},1].should == "http://some-organization.com"
33
+ end
34
+
35
+ # it "can be created with a block" do
36
+ # a = agent :ag do
37
+ # subject "http://things.com/stuff"
38
+ # name "Mr Person"
39
+ # end
40
+ # a.is_a?(Agent).should be true
41
+ # a.subject.should == "http://things.com/stuff"
42
+ # a.name.should == "Mr Person"
43
+ # end
44
+
45
+ # it "can be given a type corresponding to a subclass of prov:Agent" do
46
+ # a = agent :name, type: "software"
47
+ # a.type.should == :software
48
+ # a.to_n3["prov:SoftwareAgent"].should_not be nil
49
+ # end
50
+
51
+ # it "can be created using the organization helper" do
52
+ # a = organization :group
53
+ # a.type.should == :organization
54
+ # end
55
+
56
+ # it "raises an exception when on_behalf_of does not refer to an agent" do
57
+ # a = agent :name, on_behalf_of: :other
58
+ # expect {a.on_behalf_of[0]}.to raise_error
59
+ # end
60
+
61
+ # it "lazy loads other objects, so declaration order doesn't usually matter" do
62
+ # a = agent :name, on_behalf_of: :other
63
+ # b = agent :other
64
+
65
+ # a.on_behalf_of.should == b
66
+ # end
67
+
68
+ end
@@ -1,16 +1,16 @@
1
1
  require_relative '../../lib/bio-publisci.rb'
2
2
  include PubliSci::Prov::DSL
3
- include PubliSci::Prov
3
+ # include PubliSci
4
4
 
5
5
  describe PubliSci::Prov::Activity do
6
6
 
7
7
  before(:each) do
8
- @evaluator = PubliSci::Prov::DSL::Singleton.new
8
+ @evaluator = PubliSci::Prov::DSL::Instance.new
9
9
  end
10
10
 
11
11
  it "can generate activity fields from symbol" do
12
12
  a = activity :name
13
- a.is_a?(Activity).should be true
13
+ a.is_a?(Prov::Activity).should be true
14
14
  a.subject.should == "http://rqtl.org/ns/activity/name"
15
15
  end
16
16
 
@@ -25,7 +25,7 @@ describe PubliSci::Prov::Activity do
25
25
  subject "http://things.com/stuff"
26
26
  generated :data
27
27
  end
28
- a.is_a?(Activity).should be true
28
+ a.is_a?(Prov::Activity).should be true
29
29
  a.subject.should == "http://things.com/stuff"
30
30
  end
31
31
 
@@ -1,16 +1,15 @@
1
1
  require_relative '../../lib/bio-publisci.rb'
2
2
  include PubliSci::Prov::DSL
3
- include PubliSci::Prov
4
3
 
5
4
  describe PubliSci::Prov::Agent do
6
5
 
7
6
  before(:each) do
8
- @evaluator = PubliSci::Prov::DSL::Singleton.new
7
+ @evaluator = PubliSci::Prov::DSL::Instance.new
9
8
  end
10
9
 
11
10
  it "can generate agent fields from symbol" do
12
11
  a = agent :name
13
- a.is_a?(Agent).should be true
12
+ a.is_a?(Prov::Agent).should be true
14
13
  a.subject.should == "http://rqtl.org/ns/agent/name"
15
14
  end
16
15
 
@@ -24,7 +23,7 @@ describe PubliSci::Prov::Agent do
24
23
  subject "http://things.com/stuff"
25
24
  name "Mr Person"
26
25
  end
27
- a.is_a?(Agent).should be true
26
+ a.is_a?(Prov::Agent).should be true
28
27
  a.subject.should == "http://things.com/stuff"
29
28
  a.name.should == "Mr Person"
30
29
  end
@@ -1,10 +1,9 @@
1
1
  require_relative '../../lib/bio-publisci.rb'
2
- include PubliSci::Prov
3
2
  include PubliSci::Prov::DSL
4
3
 
5
4
  describe PubliSci::Prov::Association do
6
5
  before(:each) do
7
- @ev = PubliSci::Prov::DSL::Singleton.new
6
+ @ev = PubliSci::Prov::DSL::Instance.new
8
7
  end
9
8
 
10
9
  it "can create simple associations" do
@@ -0,0 +1,28 @@
1
+ require_relative '../../lib/bio-publisci.rb'
2
+ include PubliSci::Prov::DSL
3
+ include PubliSci
4
+
5
+ describe PubliSci::Prov::Configuration do
6
+
7
+ before(:each) do
8
+ @evaluator = PubliSci::Prov::DSL::Instance.new
9
+ end
10
+
11
+ it "can set basic config methods" do
12
+ configure do |cfg|
13
+ cfg.output :to_repository
14
+ end
15
+ settings.output.should == :to_repository
16
+ end
17
+
18
+ it "can configure different repository types", no_travis: true do
19
+ configure do |cfg|
20
+ cfg.repository :fourstore
21
+ end
22
+ a = activity :name
23
+ a.is_a?(Prov::Activity).should be true
24
+ r=to_repository
25
+ a.subject.should == "http://rqtl.org/ns/activity/name"
26
+ r.is_a?(RDF::FourStore::Repository).should be true
27
+ end
28
+ end
@@ -0,0 +1,30 @@
1
+ require_relative '../../lib/bio-publisci.rb'
2
+ include PubliSci::Prov::DSL
3
+
4
+ describe PubliSci::Prov::Derivation do
5
+ before(:each) do
6
+ @ev = PubliSci::Prov::DSL::Instance.new
7
+ end
8
+
9
+ it "can create simple derivations" do
10
+ e = @ev.entity :name
11
+ f = @ev.entity :other, derived_from: :name
12
+ # g = @ev.activity :do_things, generated: :name, associated_with: :other
13
+ f.derived_from[0].should == e
14
+ @ev.generate_n3
15
+ @ev.generate_n3["prov:wasDerivedFrom"].size.should > 0
16
+ end
17
+
18
+ it "creates qualified derivations when a block is passed" do
19
+ e = @ev.entity :name
20
+ f = @ev.entity :other do
21
+ derived_from :name do
22
+ had_activity :do_things
23
+ end
24
+ end
25
+ g = @ev.activity :do_things do
26
+ generated :other
27
+ end
28
+ f.derived_from.first.had_activity.should == g
29
+ end
30
+ end
@@ -1,15 +1,14 @@
1
1
  require_relative '../../lib/bio-publisci.rb'
2
2
  include PubliSci::Prov::DSL
3
- include PubliSci::Prov
4
3
 
5
4
  describe PubliSci::Prov::Entity do
6
5
  before(:each) do
7
- @evaluator = PubliSci::Prov::DSL::Singleton.new
6
+ @evaluator = PubliSci::Prov::DSL::Instance.new
8
7
  end
9
8
 
10
9
  it "can generate entity fields from symbol" do
11
10
  e = entity :name
12
- e.is_a?(Entity).should be true
11
+ e.is_a?(Prov::Entity).should be true
13
12
  e.subject.should == "http://rqtl.org/ns/entity/name"
14
13
  end
15
14
 
@@ -23,7 +22,7 @@ describe PubliSci::Prov::Entity do
23
22
  subject "http://things.com/stuff"
24
23
  source "/somefile.txt"
25
24
  end
26
- e.is_a?(Entity).should be true
25
+ e.is_a?(Prov::Entity).should be true
27
26
  e.subject.should == "http://things.com/stuff"
28
27
  e.source[0].should == "/somefile.txt"
29
28
  end
@@ -1,11 +1,10 @@
1
1
  require_relative '../../lib/bio-publisci.rb'
2
2
  include PubliSci::Prov::DSL
3
- include PubliSci::Prov
4
3
 
5
4
  describe PubliSci::Prov::Role do
6
5
 
7
6
  before(:each) do
8
- @evaluator = PubliSci::Prov::DSL::Singleton.new
7
+ @evaluator = PubliSci::Prov::DSL::Instance.new
9
8
  end
10
9
 
11
10
  it "creates a role in a used block" do
@@ -1,11 +1,10 @@
1
1
  require_relative '../../lib/bio-publisci.rb'
2
2
  include PubliSci::Prov::DSL
3
- include PubliSci::Prov
4
3
 
5
4
  describe PubliSci::Prov::Usage do
6
5
 
7
6
  before(:each) do
8
- @evaluator = PubliSci::Prov::DSL::Singleton.new
7
+ @evaluator = PubliSci::Prov::DSL::Instance.new
9
8
  end
10
9
 
11
10
  it "can create simple associations" do
@@ -7,18 +7,18 @@
7
7
  require_relative '../lib/bio-publisci.rb'
8
8
 
9
9
 
10
- describe R2RDF::Writer::Dataframe do
10
+ describe PubliSci::Writer::Dataframe do
11
11
 
12
12
  context "when using r/qtl dataframe", no_travis: true do
13
13
 
14
- before(:all) do
14
+ before(:all) do
15
15
  @r = Rserve::Connection.new
16
16
  @r.eval <<-EOF
17
17
  library(qtl)
18
18
  data(listeria)
19
19
  mr = scanone(listeria,method="mr")
20
20
  EOF
21
- @builder = R2RDF::Writer::Builder.new
21
+ @builder = PubliSci::Writer::Builder.new
22
22
  end
23
23
 
24
24
  it "produces equivalent dataframe from rdf" #do
data/spec/turtle/bacon CHANGED
@@ -15,15 +15,31 @@
15
15
  @prefix prov: <http://www.w3.org/ns/prov#> .
16
16
 
17
17
  ns:dsd-bacon a qb:DataStructureDefinition;
18
- qb:component [ qb:dimension prop:producer ] ;
19
- qb:component [ qb:dimension prop:pricerange ] ;
20
- qb:component [ qb:measure prop:chunkiness ] ;
21
- qb:component [ qb:measure prop:deliciousness ] .
18
+ qb:component cs:producer ;
19
+ qb:component cs:pricerange ;
20
+ qb:component cs:chunkiness ;
21
+ qb:component cs:deliciousness .
22
22
 
23
23
  ns:dataset-bacon a qb:DataSet ;
24
24
  rdfs:label "bacon"@en ;
25
25
  qb:structure ns:dsd-bacon .
26
26
 
27
+ cs:producer a qb:ComponentSpecification ;
28
+ rdfs:label "producer Component" ;
29
+ qb:dimension prop:producer .
30
+
31
+ cs:pricerange a qb:ComponentSpecification ;
32
+ rdfs:label "pricerange Component" ;
33
+ qb:dimension prop:pricerange .
34
+
35
+ cs:chunkiness a qb:ComponentSpecification ;
36
+ rdfs:label "chunkiness Component" ;
37
+ qb:measure prop:chunkiness .
38
+
39
+ cs:deliciousness a qb:ComponentSpecification ;
40
+ rdfs:label "deliciousness Component" ;
41
+ qb:measure prop:deliciousness .
42
+
27
43
  prop:producer a rdf:Property, qb:DimensionProperty ;
28
44
  rdfs:label "producer"@en ;
29
45
  qb:codeList code:producer ;
@@ -15,15 +15,31 @@
15
15
  @prefix prov: <http://www.w3.org/ns/prov#> .
16
16
 
17
17
  ns:dsd-mr a qb:DataStructureDefinition;
18
- qb:component [ qb:dimension prop:refRow ] ;
19
- qb:component [ qb:measure prop:chr ] ;
20
- qb:component [ qb:measure prop:pos ] ;
21
- qb:component [ qb:measure prop:lod ] .
18
+ qb:component cs:refRow ;
19
+ qb:component cs:chr ;
20
+ qb:component cs:pos ;
21
+ qb:component cs:lod .
22
22
 
23
23
  ns:dataset-mr a qb:DataSet ;
24
24
  rdfs:label "mr"@en ;
25
25
  qb:structure ns:dsd-mr .
26
26
 
27
+ cs:refRow a qb:ComponentSpecification ;
28
+ rdfs:label "refRow Component" ;
29
+ qb:dimension prop:refRow .
30
+
31
+ cs:chr a qb:ComponentSpecification ;
32
+ rdfs:label "chr Component" ;
33
+ qb:measure prop:chr .
34
+
35
+ cs:pos a qb:ComponentSpecification ;
36
+ rdfs:label "pos Component" ;
37
+ qb:measure prop:pos .
38
+
39
+ cs:lod a qb:ComponentSpecification ;
40
+ rdfs:label "lod Component" ;
41
+ qb:measure prop:lod .
42
+
27
43
  prop:refRow a rdf:Property, qb:DimensionProperty ;
28
44
  rdfs:label "refRow"@en ;
29
45
  qb:codeList code:refrow ;
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: bio-publisci
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.0.6
4
+ version: 0.0.7
5
5
  platform: ruby
6
6
  authors:
7
7
  - Will Strinz
8
8
  autorequire:
9
9
  bindir: bin
10
10
  cert_chain: []
11
- date: 2013-08-02 00:00:00.000000000 Z
11
+ date: 2013-08-09 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: rdf
@@ -192,6 +192,20 @@ dependencies:
192
192
  - - '>='
193
193
  - !ruby/object:Gem::Version
194
194
  version: '0'
195
+ - !ruby/object:Gem::Dependency
196
+ name: spira
197
+ requirement: !ruby/object:Gem::Requirement
198
+ requirements:
199
+ - - '>='
200
+ - !ruby/object:Gem::Version
201
+ version: '0'
202
+ type: :development
203
+ prerelease: false
204
+ version_requirements: !ruby/object:Gem::Requirement
205
+ requirements:
206
+ - - '>='
207
+ - !ruby/object:Gem::Version
208
+ version: '0'
195
209
  description: 'A toolkit for publishing scientific results and datasets using RDF,
196
210
  OWL, and related technologies '
197
211
  email: wstrinz@gmail.com
@@ -219,6 +233,10 @@ files:
219
233
  - examples/primer-full.prov
220
234
  - examples/primer.prov
221
235
  - examples/prov_dsl.prov
236
+ - examples/safe_gen.rb
237
+ - examples/visualization/primer.prov
238
+ - examples/visualization/prov_viz.rb
239
+ - examples/visualization/viz.rb
222
240
  - features/create_generator.feature
223
241
  - features/integration.feature
224
242
  - features/integration_steps.rb
@@ -238,17 +256,26 @@ files:
238
256
  - features/writer_steps.rb
239
257
  - lib/bio-publisci.rb
240
258
  - lib/bio-publisci/analyzer.rb
259
+ - lib/bio-publisci/datacube_model.rb
241
260
  - lib/bio-publisci/dataset/ORM/data_cube_orm.rb
242
261
  - lib/bio-publisci/dataset/ORM/observation.rb
262
+ - lib/bio-publisci/dataset/configuration.rb
243
263
  - lib/bio-publisci/dataset/data_cube.rb
264
+ - lib/bio-publisci/dataset/dataset.rb
244
265
  - lib/bio-publisci/dataset/dataset_for.rb
245
266
  - lib/bio-publisci/dataset/interactive.rb
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+ - lib/bio-publisci/dsl/config.rb
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+ - lib/bio-publisci/dsl/dataset_dsl.rb
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+ - lib/bio-publisci/dsl/dsl.rb
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+ - lib/bio-publisci/dsl/metadata_dsl.rb
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+ - lib/bio-publisci/dsl/prov_dsl.rb
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+ - lib/bio-publisci/metadata/generator.rb
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  - lib/bio-publisci/metadata/metadata.rb
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  - lib/bio-publisci/metadata/prov/activity.rb
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  - lib/bio-publisci/metadata/prov/agent.rb
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  - lib/bio-publisci/metadata/prov/association.rb
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+ - lib/bio-publisci/metadata/prov/config.rb
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  - lib/bio-publisci/metadata/prov/derivation.rb
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- - lib/bio-publisci/metadata/prov/dsl.rb
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  - lib/bio-publisci/metadata/prov/entity.rb
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  - lib/bio-publisci/metadata/prov/model/prov_models.rb
@@ -256,8 +283,10 @@ files:
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  - lib/bio-publisci/metadata/prov/prov.rb
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  - lib/bio-publisci/metadata/prov/role.rb
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  - lib/bio-publisci/metadata/prov/usage.rb
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+ - lib/bio-publisci/metadata/publisher.rb
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  - lib/bio-publisci/mixins/custom_predicate.rb
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  - lib/bio-publisci/mixins/dereferencable.rb
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+ - lib/bio-publisci/mixins/registry.rb
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  - lib/bio-publisci/mixins/vocabulary.rb
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  - lib/bio-publisci/output.rb
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  - lib/bio-publisci/parser.rb
@@ -268,7 +297,6 @@ files:
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  - lib/bio-publisci/readers/dataframe.rb
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  - lib/bio-publisci/readers/r_cross.rb
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  - lib/bio-publisci/readers/r_matrix.rb
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- - lib/bio-publisci/spira.rb
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  - lib/bio-publisci/store.rb
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  - lib/bio-publisci/writers/arff.rb
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  - lib/bio-publisci/writers/dataframe.rb
@@ -309,18 +337,23 @@ files:
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  - scripts/scan_islet.rb
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  - scripts/update_reference.rb
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  - spec/ORM/data_cube_orm_spec.rb
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+ - spec/ORM/prov_model_spec.rb
312
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  - spec/analyzer_spec.rb
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  - spec/csv/bacon.csv
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  - spec/csv/moar_bacon.csv
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  - spec/data_cube_spec.rb
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  - spec/dataset_for_spec.rb
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+ - spec/dsl_spec.rb
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  - spec/generators/csv_spec.rb
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  - spec/generators/dataframe_spec.rb
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  - spec/generators/r_cross_spec.rb
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  - spec/generators/r_matrix_spec.rb
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+ - spec/metadata/metadata_dsl_spec.rb
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  - spec/prov/activity_spec.rb
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  - spec/prov/agent_spec.rb
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  - spec/prov/association_spec.rb
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+ - spec/prov/config_spec.rb
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+ - spec/prov/derivation_spec.rb
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  - spec/prov/entity_spec.rb
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  - spec/prov/role_spec.rb
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  - spec/prov/usage_spec.rb