bio-nwk 0.1.1 → 0.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/bio/nwk/version.rb +1 -1
- data/lib/bio/nwk.rb +13 -0
- metadata +7 -8
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: ae983e88458806becd134adeacb02fd0628672976e7c4ff7e974227cad01ec20
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4
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data.tar.gz: 413c85a10a9db22f43b7c4f068da1f5e9e83f843796d951277e998f021f7eec2
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 19cc0561718845bc23a3f73bd0bc1bf42f83d0487e5b7a72879402a1c0eada31d6fb7dc0c18f212aac13df60b3c2c4544ce5901358fd7b389009aa41ab68c0ed
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7
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data.tar.gz: 0af6e63ed596b6358b4f0cdadb5b7686374fb121b30481a58eb8d60da87f6b493f073a0bb16743e71455151282346a6c676ad0282a278d9d8add2deb14547b2c
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data/lib/bio/nwk/version.rb
CHANGED
data/lib/bio/nwk.rb
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@@ -17,6 +17,10 @@ class Bio::Tree
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return(rv)
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end
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def all_nodes_of_subtree(node)
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[leaves(node), tips(node)].flatten
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end
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def cleanName!
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allTips.each do |tip|
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tip.name.gsub!(' ', '_')
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@@ -39,6 +43,15 @@ class Bio::Tree
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end
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end
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def twoTaxaNodeNameStr(node, sep='|')
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a = twoTaxaNodeName(node)
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if a.is_a?(Array)
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return(a.join(sep))
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else
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return(a)
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end
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end
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def sisters(node)
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if node == root
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return([])
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metadata
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: bio-nwk
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version: !ruby/object:Gem::Version
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version: 0.1.
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version: 0.1.2
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platform: ruby
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authors:
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- Sishuo Wang
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autorequire:
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autorequire:
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bindir: exe
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cert_chain: []
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date:
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date: 2021-11-18 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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@@ -87,11 +87,11 @@ files:
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- lib/bio-nwk.rb
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- lib/bio/nwk.rb
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- lib/bio/nwk/version.rb
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homepage:
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homepage:
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licenses:
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- MIT
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metadata: {}
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post_install_message:
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post_install_message:
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rdoc_options: []
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require_paths:
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- lib
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@@ -106,9 +106,8 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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signing_key:
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rubygems_version: 3.2.3
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signing_key:
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specification_version: 4
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summary: Some codes for parsing newick tree.
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test_files: []
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