bio-maf 0.2.0 → 0.3.0

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Files changed (46) hide show
  1. data/.gitignore +1 -0
  2. data/Gemfile +2 -1
  3. data/README.md +98 -29
  4. data/Rakefile +6 -2
  5. data/bin/maf_tile +59 -35
  6. data/bio-maf.gemspec +4 -3
  7. data/features/block-joining.feature +32 -0
  8. data/features/dir-access.feature +46 -0
  9. data/features/maf-indexing.feature +23 -0
  10. data/features/maf-to-fasta.feature +9 -0
  11. data/features/slice.feature +54 -0
  12. data/features/step_definitions/dir-access_steps.rb +15 -0
  13. data/features/step_definitions/file_steps.rb +7 -0
  14. data/features/step_definitions/gap_removal_steps.rb +4 -0
  15. data/features/step_definitions/index_steps.rb +3 -3
  16. data/features/step_definitions/output_steps.rb +9 -1
  17. data/features/step_definitions/parse_steps.rb +13 -2
  18. data/features/step_definitions/query_steps.rb +7 -6
  19. data/features/step_definitions/slice_steps.rb +15 -0
  20. data/features/step_definitions/{gap-filling_steps.rb → tiling_steps.rb} +0 -0
  21. data/features/support/aruba.rb +1 -0
  22. data/features/support/env.rb +3 -1
  23. data/features/{gap-filling.feature → tiling.feature} +85 -0
  24. data/lib/bio/maf/index.rb +223 -11
  25. data/lib/bio/maf/maf.rb +209 -0
  26. data/lib/bio/maf/parser.rb +190 -111
  27. data/lib/bio/maf/tiler.rb +33 -6
  28. data/man/maf_index.1 +1 -1
  29. data/man/maf_tile.1 +7 -7
  30. data/man/maf_tile.1.ronn +21 -13
  31. data/man/maf_to_fasta.1 +1 -1
  32. data/spec/bio/maf/index_spec.rb +99 -0
  33. data/spec/bio/maf/maf_spec.rb +184 -0
  34. data/spec/bio/maf/parser_spec.rb +75 -115
  35. data/spec/bio/maf/tiler_spec.rb +44 -0
  36. data/test/data/chr22_ieq2.maf +11 -0
  37. data/test/data/gap-1.kct +0 -0
  38. data/test/data/gap-1.maf +9 -0
  39. data/test/data/gap-filled1.fa +6 -0
  40. data/test/data/gap-sp1.fa.gz +0 -0
  41. data/test/data/mm8_chr7_tiny_slice1.maf +9 -0
  42. data/test/data/mm8_chr7_tiny_slice2.maf +10 -0
  43. data/test/data/mm8_chr7_tiny_slice3.maf +10 -0
  44. data/test/data/mm8_chrM_tiny.kct +0 -0
  45. data/test/data/mm8_chrM_tiny.maf +1000 -0
  46. metadata +59 -7
@@ -3,121 +3,6 @@ require 'spec_helper'
3
3
  module Bio
4
4
  module MAF
5
5
 
6
- describe Header do
7
- before(:each) do
8
- @p = Parser.new(TestData + 't1.maf')
9
- end
10
-
11
- it "provides version information" do
12
- @p.header.version.should == '1'
13
- end
14
- it "provides the scoring scheme" do
15
- @p.header.scoring.should == 'humor.v4'
16
- end
17
- it "provides alignment parameters" do
18
- @p.header.alignment_params.should =~ /humor.v4 R=30/
19
- end
20
-
21
- it "presents multiline parameters correctly" do
22
- @p.header.alignment_params.should == "humor.v4 R=30 M=10 /cluster/data/hg15/bed/blastz.mm3/axtNet300/chr1.maf /cluster/data/hg15/bed/blastz.rn3/axtNet300/chr1.maf"
23
- end
24
-
25
- it "provides arbitrary parameters"
26
- end
27
-
28
- describe Block do
29
- describe "#find_gaps" do
30
- it "finds a single 14-base gap" do
31
- p = Parser.new(TestData + 'mm8_chr7_tiny.maf')
32
- p.sequence_filter = { :only_species => %w(mm8 rn4 hg18 canFam2 loxAfr1) }
33
- block = p.parse_block
34
- gaps = block.find_gaps
35
- gaps.size.should == 1
36
- gaps[0][0].should == 34
37
- gaps[0][1].should == 14
38
- end
39
- end
40
- describe "#remove_gaps!" do
41
- it "removes a single 14-base gap" do
42
- p = Parser.new(TestData + 'mm8_chr7_tiny.maf')
43
- p.sequence_filter = { :only_species => %w(mm8 rn4 hg18 canFam2 loxAfr1) }
44
- block = p.parse_block
45
- block.sequences.size.should == 5
46
- block.text_size.should == 54
47
- block.remove_gaps!
48
- block.text_size.should == 40
49
- end
50
- end
51
- end
52
-
53
- describe Sequence do
54
- before(:each) do
55
- @parser = DummyParser.new
56
- end
57
-
58
- describe "#gapped?" do
59
- it "is false for sequences with no gaps" do
60
- line = "s human_unc 9077 8 + 10998 ACAGTATT"
61
- s = @parser.parse_seq_line(line, nil)
62
- s.gapped?.should be_false
63
- end
64
- it "is true for sequences with gaps" do
65
- line = "s human_unc 9077 8 + 10998 AC-AGTATT"
66
- s = @parser.parse_seq_line(line, nil)
67
- s.gapped?.should be_true
68
- end
69
- end
70
-
71
- describe "#text_range" do
72
- it "returns 0...text.size for a spanning interval" do
73
- line = "s human_unc 9077 8 + 10998 ACAGTATT"
74
- s = @parser.parse_seq_line(line, nil)
75
- range = s.text_range(9077...(9077 + 8))
76
- range.should == (0...(s.text.size))
77
- end
78
- it "returns 0...text.size for a gapped spanning interval" do
79
- line = "s human_unc 9077 8 + 10998 AC--AGTATT"
80
- s = @parser.parse_seq_line(line, nil)
81
- range = s.text_range(9077...(9077 + 8))
82
- range.should == (0...(s.text.size))
83
- end
84
- it "handles a leading subset" do
85
- line = "s human_unc 9077 8 + 10998 ACAGTATT"
86
- s = @parser.parse_seq_line(line, nil)
87
- range = s.text_range(9077...(9077 + 2))
88
- range.should == (0...2)
89
- end
90
- it "handles a trailing subset" do
91
- line = "s human_unc 9077 8 + 10998 ACAGTATT"
92
- s = @parser.parse_seq_line(line, nil)
93
- range = s.text_range(9079...9085)
94
- range.should == (2...8)
95
- end
96
- it "handles a gap in the middle" do
97
- line = "s human_unc 9077 8 + 10998 AC--AGTATT"
98
- s = @parser.parse_seq_line(line, nil)
99
- range = s.text_range(9078...(9077 + 8))
100
- range.should == (1...(s.text.size))
101
- end
102
- it "errors on a range starting before" do
103
- expect {
104
- line = "s human_unc 9077 8 + 10998 ACAGTATT"
105
- s = @parser.parse_seq_line(line, nil)
106
- range = s.text_range(9076...(9077 + 8))
107
- }.to raise_error
108
- end
109
- it "errors on a range ending after" do
110
- expect {
111
- line = "s human_unc 9077 8 + 10998 ACAGTATT"
112
- s = @parser.parse_seq_line(line, nil)
113
- range = s.text_range(9076...(9077 + 9))
114
- }.to raise_error
115
- end
116
-
117
- end
118
-
119
- end
120
-
121
6
  describe ParseContext do
122
7
  it "tracks the last block position"
123
8
  end
@@ -247,6 +132,20 @@ module Bio
247
132
  blocks = @p.fetch_blocks(fl).to_a
248
133
  blocks.size.should == 2
249
134
  blocks.collect {|b| b.offset}.should == [16, 3011]
135
+ end
136
+ it "does not return empty blocks" do
137
+ fl = [[16, 1087]]
138
+ @p.sequence_filter = { :only_species => %w(jabberwocky unicorn) }
139
+ blocks = @p.fetch_blocks(fl).to_a
140
+ blocks.size.should == 0
141
+ end
142
+ it "takes a block argument" do
143
+ fl = [[16, 1087], [1103, 1908], [3011, 2027]]
144
+ n = 0
145
+ @p.fetch_blocks(fl) do |block|
146
+ n += 1
147
+ end
148
+ n.should == 3
250
149
  end
251
150
  end
252
151
  context "with 4K chunk size" do
@@ -287,6 +186,13 @@ module Bio
287
186
  end
288
187
  end
289
188
 
189
+ describe "#each_block" do
190
+ it "returns an Enumerator when called without a block" do
191
+ p = described_class.new(TestData + 'mm8_chr7_tiny.maf')
192
+ p.each_block.count.should == 8
193
+ end
194
+ end
195
+
290
196
  describe "sequence_filter" do
291
197
  before(:each) do
292
198
  @p = described_class.new(TestData + 'mm8_mod_a.maf')
@@ -309,6 +215,10 @@ module Bio
309
215
  }
310
216
  @p.parse_block.filtered?.should be_false
311
217
  end
218
+ it "does not return empty blocks" do
219
+ @p.sequence_filter = { :only_species => %w(jabberwocky unicorn) }
220
+ @p.parse_blocks.count.should == 0
221
+ end
312
222
  end
313
223
 
314
224
  context "at end of file" do
@@ -450,6 +360,56 @@ module Bio
450
360
  end
451
361
  end
452
362
 
363
+ describe ":join_blocks" do
364
+ it "returns joined blocks" do
365
+ p = Parser.new(TestData + 'mm8_chr7_tiny.maf',
366
+ :join_blocks => true)
367
+ p.sequence_filter = {
368
+ :only_species => %w(mm8 rn4 oryCun1 hg18 panTro2 rheMac2 canFam2 loxAfr1 echTel1)
369
+ }
370
+ idx = KyotoIndex.open(TestData + "mm8_chr7_tiny.kct")
371
+ l = idx.find([GenomicInterval.zero_based('mm8.chr7',
372
+ 80082334,
373
+ 80082471)],
374
+ p).to_a
375
+ l.size.should == 1
376
+ l.first.text_size.should == 210
377
+ end
378
+ end
379
+
380
+ describe ":remove_gaps" do
381
+ it "removes gaps from #parse_blocks" do
382
+ p = Parser.new(TestData + 'mm8_chr7_tiny.maf',
383
+ :remove_gaps => true)
384
+ p.sequence_filter = { :only_species => %w(mm8 rn4) }
385
+ b = p.parse_blocks.first
386
+ b.text_size.should == 34
387
+ end
388
+ it "removes gaps from #parse_block" do
389
+ p = Parser.new(TestData + 'mm8_chr7_tiny.maf',
390
+ :remove_gaps => true)
391
+ p.sequence_filter = { :only_species => %w(mm8 rn4) }
392
+ b = p.parse_block
393
+ b.text_size.should == 34
394
+ end
395
+ end
396
+
397
+ describe ":as_bio_alignment" do
398
+ it "returns bio-alignment objects" do
399
+ p = Parser.new(TestData + 'mm8_chr7_tiny.maf',
400
+ :as_bio_alignment => true)
401
+ idx = KyotoIndex.open(TestData + "mm8_chr7_tiny.kct")
402
+ l = idx.find([GenomicInterval.zero_based('mm8.chr7',
403
+ 80082334,
404
+ 80082471)],
405
+ p).to_a
406
+ l.size.should == 2
407
+ l.first[0][0].should == 'G'
408
+ l.first[0].id.should == 'mm8.chr7'
409
+ end
410
+ end
411
+
412
+
453
413
  end
454
414
 
455
415
  end
@@ -4,6 +4,47 @@ module Bio::MAF
4
4
 
5
5
  describe Tiler do
6
6
 
7
+ describe "#reference=" do
8
+ it "takes a FASTARangeReader" do
9
+ t = Tiler.new
10
+ t.reference = FASTARangeReader.new((TestData + 'gap-sp1.fa').to_s)
11
+ t.reference.read_interval(0, 3).should == 'CCA'
12
+ end
13
+ it "takes an open file" do
14
+ (TestData + 'gap-sp1.fa').open do |fh|
15
+ t = Tiler.new
16
+ t.reference = fh
17
+ t.reference.read_interval(0, 3).should == 'CCA'
18
+ end
19
+ end
20
+ it "takes a FASTA literal" do
21
+ ref = File.read(TestData + 'gap-sp1.fa')
22
+ t = Tiler.new
23
+ t.reference = ref
24
+ t.reference.read_interval(0, 3).should == 'CCA'
25
+ end
26
+ it "takes a Pathname" do
27
+ t = Tiler.new
28
+ t.reference = TestData + 'gap-sp1.fa'
29
+ t.reference.read_interval(0, 3).should == 'CCA'
30
+ end
31
+ it "takes a path string" do
32
+ t = Tiler.new
33
+ t.reference = (TestData + 'gap-sp1.fa').to_s
34
+ t.reference.read_interval(0, 3).should == 'CCA'
35
+ end
36
+ it "takes a gzipped Pathname" do
37
+ t = Tiler.new
38
+ t.reference = TestData + 'gap-sp1.fa.gz'
39
+ t.reference.read_interval(0, 3).should == 'CCA'
40
+ end
41
+ it "takes a gzipped path string" do
42
+ t = Tiler.new
43
+ t.reference = (TestData + 'gap-sp1.fa.gz').to_s
44
+ t.reference.read_interval(0, 3).should == 'CCA'
45
+ end
46
+ end
47
+
7
48
  describe "#runs" do
8
49
  it "returns a uniform run properly" do
9
50
  a = Array.new(10, 'a')
@@ -57,6 +98,9 @@ module Bio::MAF
57
98
  it "returns the entire sequence" do
58
99
  check_range(0, 50)
59
100
  end
101
+ it "returns a sub-line fragment" do
102
+ check_range(0, 4)
103
+ end
60
104
  it "returns an entire line" do
61
105
  check_range(10, 20)
62
106
  end
@@ -0,0 +1,11 @@
1
+ ##maf version=1 scoring=autoMZ.v1
2
+ a score=13668.000000
3
+ s hg19.chr22 16054189 54 + 51304566 TCTGTGAAACCCACAGTAATGGGGCTGACATCCTCTGCCCTATGCAAGAGAGGT
4
+ s ponAbe2.chrUn 13354616 54 + 72422247 TCTTTCAAACCCACAGTAATGGGGCTGACATCCTCTACCATATGCAAGAGAGGT
5
+ q ponAbe2.chrUn 855489998999999899968899889893997969799999879999999989
6
+ i ponAbe2.chrUn N 0 C 0
7
+ s panTro2.chrUn 7684562 54 + 58616431 TCTGTGAAACCCACAGTAATGGGGCTGACATCCTCTGCCCTATGCAAGAGAGAT
8
+ q panTro2.chrUn 999999999999999999999999999999999999999999999999999999
9
+ i panTro2.chrUn C 0 I 146
10
+ e turTru1.scaffold_109008 25049 1601 + 50103 I
11
+
Binary file
@@ -0,0 +1,9 @@
1
+ ##maf version=1
2
+ a score=20.0
3
+ s sp1.chr1 10 13 + 50 GGGCTGAGGGC--AG
4
+ s sp2.chr5 53010 13 + 65536 GGGCTGACGGC--AG
5
+ s sp3.chr2 33010 15 + 65536 AGGTTTAGGGCAGAG
6
+
7
+ a score=21.0
8
+ s sp1.chr1 30 10 + 50 AGGGCGGTCC
9
+ s sp2.chr5 53030 10 + 65536 AGGGCGGTGC
@@ -0,0 +1,6 @@
1
+ >sp1
2
+ CCAGGATGCTGGGCTGAGGGC--AGTTGTGTCAGGGCGGTCCGGTGCAGGCA
3
+ >sp2
4
+ **********GGGCTGACGGC--AG*******AGGGCGGTGC**********
5
+ >sp3
6
+ **********AGGTTTAGGGCAGAG***************************
Binary file
@@ -0,0 +1,9 @@
1
+ ##maf version=1
2
+ a score=10542.0
3
+ s mm8.chr7 80082350 18 + 145134094 TGGAGGGCGGTCCCAGCA
4
+ s rn4.chr1 136011801 18 + 267910886 CGGAGGGCGGTCCCAGCA
5
+
6
+ a score=-33148.0
7
+ s mm8.chr7 80082368 12 + 145134094 TGAGAGGGCATG
8
+ s rn4.chr1 136011819 12 + 267910886 TGAGAGGGCATG
9
+
@@ -0,0 +1,10 @@
1
+ ##maf version=1
2
+ a score=30120.0
3
+ s mm8.chr7 80082718 10 + 145134094 CAAAGGCAGC
4
+ s rn4.chr1 136012152 10 + 267910886 CAGAGGCAGC
5
+ s hg18.chr15 88557993 10 + 100338915 CTGAACCAGC
6
+ s panTro2.chr15 87960238 10 + 100063422 CTGAACCAGC
7
+ s rheMac2.chr7 69865091 10 + 169801366 CTGAACCAGC
8
+ s canFam2.chr3 56030954 10 + 94715083 TTGACCCAGC
9
+ s echTel1.scaffold_304651 922 10 - 10007 TCCATCCCAC
10
+
@@ -0,0 +1,10 @@
1
+ ##maf version=1
2
+ a score=30120.0
3
+ s mm8.chr7 80082757 10 + 145134094 AAGAGATAAA
4
+ s rn4.chr1 136012191 10 + 267910886 AAGAGATAAA
5
+ s hg18.chr15 88558033 10 + 100338915 AAAAGATAAG
6
+ s panTro2.chr15 87960278 10 + 100063422 AAAAGATAAG
7
+ s rheMac2.chr7 69865131 10 + 169801366 AAAAGATGAG
8
+ s canFam2.chr3 56030983 6 + 94715083 ACAA----AG
9
+ s echTel1.scaffold_304651 962 10 - 10007 AAAAGATAAA
10
+
Binary file
@@ -0,0 +1,1000 @@
1
+ ##maf version=1 scoring=autoMZ.v1
2
+ a score=360695.000000
3
+ s mm8.chrM 0 81 + 16299 GTTAATGTAGCTTAA--TAACAAAGCAAAGCACTGAAAATGCTTAGATG-GATAATTG--TA-TCCCATAAAC-ACAAAGGTTTGGTC
4
+ s galGal2.chrM 1234 75 + 16775 -------TAGCTTAAC-CCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACT--AT-ACCTGTGGGC-A-AAAGACTTAGTC
5
+ i galGal2.chrM N 0 C 0
6
+ s oryCun1.scaffold_140182 113 82 + 20791 GTTAATGTAGCTTAA--CAACAAAGCAAAGCACTGAAAATGCTTAGATGAGCCTTCCC--GG-CTCCATAAAC-ATAAAGGTTTGGTC
7
+ i oryCun1.scaffold_140182 N 0 C 0
8
+ s rn4.chrM 2 78 + 16300 --TAATGTAGCTTA---TAATAAAGCAAAGCACTGAAAATGCTTAGATG-GATTCAAA--AA-TCCCATAAAC-ACAAAGGTTTGGTC
9
+ i rn4.chrM N 0 C 0
10
+ s hg18.chrM 578 84 + 16571 GTTTATGTAGCTTACCTCCTCAAAGCAATACACTGAAAATGTTTAGACGGGCTCACAT--CA-CCCCATAAAC-AAATAGGTTTGGTC
11
+ i hg18.chrM N 0 C 0
12
+ s panTro2.chrM 4 80 + 16554 ----ATGTAGCTTACCCCCTCAAAGCAATACACTGAAAATGTTTCGACGGGTTTACAT--CA-CCCCATAAAC-AAACAGGTTTGGTC
13
+ i panTro2.chrM N 0 C 0
14
+ s rheMac2.chr14 30986862 84 - 133002572 GTTAATGTAGCTTAATTATTTACAGCAAGACATTGAAAATGTCTAGATGGGATTACAC--AA-CCCTATAAAC-AGATAAATTTGGTC
15
+ i rheMac2.chr14 N 0 N 0
16
+ s bosTau2.chrM 363 80 + 16338 GTTGATGTAGCTTAAC-C--CAAAGCAAGGCACTGAAAATGCCTAGATG-AGTCTCCC--AA-CTCCATAAAC-ACATAGGTTTGGTC
17
+ i bosTau2.chrM N 0 C 0
18
+ s canFam2.chrM 2 80 + 16727 --TAATGTAGCTTAAT-TAATAAAGCAAGGCACTGAAAATGCCAAGATG-AGTCGCAC--GA-CTCCATAAAC-ATAAAGGTTTGGTC
19
+ i canFam2.chrM N 0 C 0
20
+ s dasNov1.scaffold_23239 3802 82 - 16977 GTCAACGTAGCTTAA--GTCTAAAGCGAGGCACTGAAAATGCCTAAACGAATCCTAAT--GA-TTCCGCAGAC-ACACAGGTCTGGTC
21
+ i dasNov1.scaffold_23239 N 0 C 0
22
+ s loxAfr1.scaffold_36650 3007 83 + 16266 GTTAATGTAGCTTAA--AACAAAAGCAAGGTACTGAAAATACCTAGACGAGTATATCC--AA-CTCCATAAACAACAAAGGTTTGGTC
23
+ i loxAfr1.scaffold_36650 N 0 C 0
24
+ s echTel1.scaffold_49882 260 78 - 7170 GTTAATGTAGCTTAA--TA-AAAAGTGAGGCACTGAAAATGCCTAGATGAGTAT---T--AA-CTCCATAAAC-ATAAAGGTTTGGTT
25
+ i echTel1.scaffold_49882 N 0 C 0
26
+ s monDom4.chrUn 117151420 82 + 174229318 GTTGATGTAGCTTAA--CTTAAAAGCAAAGCACTGAAAATGCTTAGATG-GTTTATACTAAA-ACCCATAAAC-A-AAAGGTTTGGTC
27
+ i monDom4.chrUn N 0 C 0
28
+ s tetNig1.chrUn_random 103509752 81 + 171761319 GCTAGTGTAGCTTAA--TA--AAAGCATAACACTGAAGATGTTAAGATGGGCCCTAGA--AAGCCCCACAGGC-ACAAAGGCTTGGTC
29
+ i tetNig1.chrUn_random N 0 C 0
30
+ s fr1.chrUn 320907090 81 + 349519338 GCTAGCGTAGCTTAA--CC--AAAGCAGAGTACTGAAGATGCTAAGATGGGCCCTGAA--AAGTCCCGCAGGC-ACAAAAGCTTGGTC
31
+ i fr1.chrUn N 0 C 0
32
+ s danRer4.chrM 950 82 + 16596 GCTAGCGTAGCTTAA--AA-TAAAGCACGGCACTGAAGCTGCCAAGATGGGCCCTAAT--AAGCTCCGCATGC-ACAAAGGCATGGTC
33
+ i danRer4.chrM N 0 C 0
34
+
35
+ a score=1709796.000000
36
+ s mm8.chrM 81 379 + 16299 CTGGCCTTATAATTAATTAGAGGTAAAATTACACATGCAAACCTCCATAGACCGGTGTAA-AATCCCTTAAACATTT-ACTTA--------AAATTTAAGGAGAGGGTATCAAGCACAT--------TAA--AATAGCTTAAGACACCTTGCCT-AGCCACACCCCCACGGG-ACTCAGCAGTGATAAATATTAAGCAATAAACG---AAAGTTTGACTAAGTTA-TACCT---C-TTAGGGTT-GGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAAT-TATCTT-CGGCGTAAAACGTGTCAACT----ATAAATAAATA-----AATAGAATTAAAATCCAACTTA-TATGT-GAAAATTCATTGTTAGGACCT-AAACTCAATAACGAAAGTAATTCT----AGTCA---------TT
37
+ s oryCun1.scaffold_140182 195 382 + 20791 CTGGCCTTTTTATTGTTTTGTAGCAACCTTACACATGCAAGACTCCTCACGCCAGTG-AG-AATGCCCTTAACATCA-AACTA--------GATCAAGAGGAGCGGACATTAAGCACAC--------TAATCAGTAGCTCAAGATGCCTTGCTT-AACCACACCCCCAAGGG-ATACAGCAGTGATAAATATTTAGCAATGAACG---TAAGTTTGACTAAGTTA-TGCTA---CTTTAGGGTT-GGTAAATCTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAATTAATAAATATC-CGGCGTAAAGCGTGATTAGA----ATAAACAACAA-----AATAAAATCAAATAACAACTAA-GCTGT-AAAAAGTAATAGTTGCAAACA-AAAATAAACAACGAAAGTGATTTT----ATACT---------CT
38
+ i oryCun1.scaffold_140182 C 0 C 0
39
+ s rn4.chrM 80 379 + 16300 CTGGCCTTATAATTAATTGGAGGTAAGATTACACATGCAAACATCCATAAACCGGTGTAA-AATCCCTTAAAGATTT-GCCTA--------AAACTTAAGGAGAGGGCATCAAGCACAT---------AA--TATAGCTCAAGACGCCTTGCCT-AGCCACACCCCCACGGG-ACTCAGCAGTGATAAATATTAAGCAATGAACG---AAAGTTTGACTAAGCTAGTACCT---C-TCAGGGTT-GGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAAT-TATTTT-CGGCGTAAAACGTGCCAACT----ATAAATCTCAT-----AATAGAATTAAAATCCAACTTA-TATGT-GAAAATTCATTGTTAGGACCT-AAGCCCAATAACGAAAGTAATTCT----AATCA---------TT
40
+ i rn4.chrM C 0 C 0
41
+ s hg18.chrM 662 382 + 16571 CTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTG-AG-TTCACCCTCTAAATC--ACCAC--------GATCAAAAGGGACAAGCATCAAGCACGCAG------CAA--TGCAGCTCAAAACGCTTAGCCT-AGCCACACCCCCACGGG-AAACAGCAGTGATTAACCTTTAGCAATAAACG---AAAGTTTAACTAAGCTA-TACTAAC-C-CCAGGGTT-GGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAAT-AGAAGC-CGGCGTAAAGAGTGTTTTAG----ATCACCCCCTC--CCCAATAAAGCTAAAACTCACCTGA-GTTGT-AAAAAACTCCAGTT--GACAC-AAAATAGACTACGAAAGTGGCTTT----AACAT---------AT
42
+ i hg18.chrM C 0 C 0
43
+ s panTro2.chrM 84 376 + 16554 CTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGCCCC-GTG-AG--TCACCCTCTAAATC--GCCAT--------GATCAAAAGGAACAAGTATCAAGCACGCAG------CAA--TGCAGCTCAAAACGCTTAGCCT-AGCCACACCCCCACGGG-AGACAGCAGTGATAAACCTTTAGCAATAAACG---AAAGTTTAACTAAGCCA-TACTAAC-C-TCAGGGTT-GGTCAATTTCGTGCTAGCCACCGCGGTCATACGATTAACCCAAGTCAAT-AGAAAC-CGGCGTAAAGAGTGTTTTAG----ATCACCCCCCC------ATAAAGCTAAAATTCACCTGA-GTTGT-AAAAAACTCCAGCT--GATAC-AAAATAAACTACGAAAGTGGCTTT----AACAC---------AT
44
+ i panTro2.chrM C 0 C 0
45
+ s rheMac2.chr5 34435460 378 - 182086969 ctgGCCTTTTCCTTAGCTCTTAGTAGGATTACACATGCAAGCATCCCCACCCCAGTG-AAAAATGCCCTCTAGATC--ACCG---------GATCAAAAGGAGCAGGTATCAAGCATGCAT------GAA--TGCACCTCAAAACACTTTGCTC-AACCACACCCCCACGGG-AAACAGCAGTGATAAATCCTTAGTAATAAATG---GAAGTTTGACCAAGCCA-TACTAATAT-TTAGGGTT-GGTTAATTTCGTGCCAGTCA-CGTGGCCATAAGATTAACCCAAGCTAAT-AGAACT-TGGCGTAAAGAATGTTTAAG----GTCTACCCTCA------ATAAAGCTAAACTCCATTTAA-GCTGTAAAAAAACTCCAGCT--GAAAT-AAAATATACTACAAAAGTGGCTTT----AATAT----------C
46
+ i rheMac2.chr5 N 0 C 0
47
+ s bosTau2.chrM 443 376 + 16338 CCAGCCTTCCTGTTAACTCTTAATAAACTTACACATGCAAGCATCTACACCCCAGTG-AG-AATGCCCTCTAGGTT--ATTAA--------AACTAAGAGGAGCTGGCATCAAGCACACAC------CC---TGTAGCTCACGACGCCTTGCTT-AACCACA-CCCCACGGG-AAACAGCAGTGACAAAAATTAAGCCATAAACG---AAAGTTTGACTAAGTTA-TATTA---A-TTAGGGTT-GGTAAATCTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAGCTAAC-AGGAGTACGGCGTAAAACGTGTTAAAG----CACCATACCAA------ATAGGGTTAAATTCTAACTAA-GCTGT-AAAAAGCCATGATT--AAAATAAAAATAAATGACGAAAGTGACCCT----ACAAT---------AG
48
+ i bosTau2.chrM C 0 C 0
49
+ s canFam2.chrM 82 378 + 16727 CTAGCCTTCCTATTAGTTTTTAGTAGACTTACACATGCAAGCCTCCACGCCCCAGTG-AG-AATGCCCTTAAAATC--ACCAG-------TGATCTAAAGGAGCAGGTATCAAGCACACTC------TTA--AGTAGCTCATAACACCTTGCTA-AGCCACACCCCCACGGG-ATACAGCAGTGATAAAAATTAAGCCATAAACG---AAAGTTTGACTAAGCCA-TACTA---A-ATAGGGTT-GGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAAT-AGGCCTACGGCGTAAAGCGTGTTCAAG----ATACTTTTACA------CTAAAGTTAAAACTTAACTAA-GCCGT-AAAAAGCTACAGTT--ATCAT-AAAATAAACCACGAAAGTGACTTT----ATAAT---------AA
50
+ i canFam2.chrM C 0 I 1
51
+ s dasNov1.scaffold_23239 3884 386 - 16977 CTAGCCTTACTATTAATTCATAACAAAATTACACATGCAAGTATCAGCACACCAGTG-AG-AATGCCCTCTAACTC--TTATA--------GATCAAAAGGAGCAAGCATCAAGTACACACAGCCCTTAC--AGTAGCTCATAACGCTTTGCTC-AACCACACCCCCACGGG-ATACAGCAGTGATAAAAATTAAGCAATAAGCG---AAAGCTTGACTAAGTTA-TGTTATT-A-TAAGGGTT-GGTAAATTTCGTGCCAGCAACCGCGGTCATACGATTAACCCAAATTAAT-AGTTAT-CGGCGTAAAGCGTGTTTAAG----ACACCTAGACA------ATAGAGTTAAACCCTTACTAC-GCTGT-AAAAAGCCTTAGTAGGACCAT-AAACCCTTCAACGAAAGTGACTCT----AATTT---------AT
52
+ i dasNov1.scaffold_23239 C 0 C 0
53
+ s loxAfr1.scaffold_36650 3090 383 + 16266 CCGGCCTTCTTATTGGTTACTAGGAAACTTATACATGCAAGTATCCGCCCGCCAGTG-AA-TACGCCTTCTAAATC--ATCAC-------CGATCAAAGAGAGCTGGCATCAAGCACACAC---TCTAAG--TGTAGCTCATGACGTCTCGCCT-AGCCACACCCCCACGGG-AAACAGCAGTAGTAAATATTTAGCAATTAACA---AAAGTTAGACTAAGTTA-TCCTAA--T-AAAGGACT-GGTCAATTTCGTGCCAGCAACCGCGGCCATACGATTAGTCCAAATTAAT-AAGCATACGGCGTAAAGCGTATCAGAA----GAATTAAGAAA------ATAAAGTTAAATCTTATACTA-GCTGT-TTAAAGCTCAAGATAAGACAT-A-AATAACCTACGAAAGTGACTTT----AATAA---------TC
54
+ i loxAfr1.scaffold_36650 C 0 C 0
55
+ s echTel1.scaffold_49882 338 378 - 7170 CTAGCCTTTTTATTAGTTCTTAATAAAATTATACATGCAAGTATCCACCCCCCAGTG-AA-AATGCCCTTAAACTT--ACTTA-------TAATTAAGAGGAGCAGGTATCAAGCACA-------CTTAA--TGTAGCTCACAACACCTTGCTA-AGCCACACCCTCACGGG-ACACAGCAGTAATAAAAATTAAGCAATTAACG---GAAGTTTGACTTAGTTA-TATTAT--T-TAATTAGTCGGTCAACTTCGTGCCAGCCACCGCGGTCATACGAAGGACTTGAACTAAT-AAATAC-CGGCGTAAAGCGTGATTAAG----ATCTTTAAACA------ATAAAACAAAAAC-TATTCTATGCCGT-AAAAAGCC--AGAGAATACTT-ATAATAAATAACGAAGGTAATTTT----ATAAT---------TT
56
+ i echTel1.scaffold_49882 C 0 C 0
57
+ s monDom4.chrUn 117151502 391 + 174229318 CTAGCCTTCTTGTTAATTTTAATTAGACCTACACATGCAAGTTTCCGCTGCCCTGTG-AG-AATGCCCTCAAAACT--ACTCAATTCTCCAAGATAAGAGGAGCTGGTATCAGGCACACAC------TACT-AGTAGCCAACTACACCTTGCTC-AACCACACCCCCACGGG-AAACAGCAGTGATTAAAATTAAGCTATAAACG---AAAGTTTGACTAAATCA-TAGTTAT-C-TAAGGGTT-GGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAATTAAC-AAGCCTCCGGCGTAAAGCGTGTCCAAA----CAAAAGACTAA----TAATAAAGTTAATACTTAACTAA-GTTGT-AACACACTCCAGTTA-ATACT-AAGATAAACTATTAAAATAACTTT----AATAA---------AG
58
+ i monDom4.chrUn C 0 C 0
59
+ s galGal2.chrM 1309 395 + 16775 CTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTG-AA-AATGCCCCCAAACCT--TTCTT-----CCCAAGCAAAAGGAGCAGGTATCAGGCACACTC------AGC--AGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTG---TAAACTTGACTTAGCCA-TAGCAA--C-CCAGGGTT-GGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAAT-AGCTACCCGGCGTAAAGAGTGGCCACATGTTATCTGCACCAG------CTAAGATTAAAATGCAACCAA-GCTGT-CATAAGCCTAAGATC-CACCT-AAACCCAAC--CCAAATCCATCTT----AGCCTCAACGATTAAT
60
+ i galGal2.chrM C 0 C 0
61
+ s xenTro2.scaffold_18005 958 384 + 3405 CCAGCCTTGTCATCAACTTTATCTGAACTTACACATGCAAGCATCCGCATTCCCGTG-AA-AATGCCCTTAAGCCC--CTAAA-----ACAGAGGATAAGGAGCCGGTATCAGGCACGACC-----------ATCAGCCCACGACACCTTGCTA-TGCCACACCCACAAGGGAACTCAGCAGTGATAAACATTGAAC-ATGAGCGATTAAAGCTCGACTCAGTTA-CAGAT---A-ACAGAGTT-GGTCAATCTCGTGCCAGCCGCCGCGGTTATACGAGAAACTCAAGTTGAT-AATTCA-CGGCGTAAAGCGTGATTAAG----GTTCACCCTCA------CTAGAGTCAAACCCTAGCTAA-GCTGT-CGCACGCTTTCGCTA-GACTG-AAGAACACTAACGAAAGTAACTCTACCCAACAT---------AC
62
+ i xenTro2.scaffold_18005 N 0 C 0
63
+ s tetNig1.chrUn_random 103509833 382 + 171761319 CTGACTTTACTAACAGCTCTAGCCAAACTTACACATGCAAGTATCCGCACCCCCGTG-AG-AATGCCCTACACACCC-TGCCC--------GGGAATTAGGAGCCGGTATCAGGCACAC-C------CCT--CGTAGCCCATGACGCCTTGCTT-AGCCACACCCCCAAGGGAACTCAGCAGTGATAAACATTAAGCCATAAGTG---AAAACTTGACTTAGCTA-CGGCT---T-AGAGGGCC-GGTAAAACTCGTGCCAGCCACCGCGGTTATACGAGAGACCCAAGTTGTT-AGCCCC-CGGCGTAAAGAGTGGTTAAA----ACACCAAACAC--CAAACTGAGGCCGAACGCCCTCAAG-GCAGT-TATACGCTCCCGAGG-ACATG-AAGGACAATTACGAAGGTAGCCTC----ACCCC---------CT
64
+ i tetNig1.chrUn_random C 0 C 0
65
+ s fr1.chrUn 320907171 383 + 349519338 CTGACTTTACTAACAACTCTGATCAAACTTACACATGCAAGTATCCGCATCCCAGTG-AA-AATGCCCCCCGCCCCC-CGTCC--------GGAAATAGGGAGTTGGTATCAGGCACACAA------ATT--TGTAGCCCATGACACCTAGCTT-TGCCACGCCCCCAAGGGAATTCAGCAGTGATAAACATTAAGCCATAAGTG---AAAACTTGACTTAGTCA-TGATC---T-AAAGAGTC-GGTAAAACTCGTGCCAGCCACCGCGGTTATACGAGAGACCCAAGTTGTT-AGCCAA-CGGCGTAAAGGGTGGTTAGA----ACTAAAAACAA--CAAACTGAGACCGAACACCTTCAAG-GCTGT-TATACGCTTCCGAAG-CAACG-AAGAACAATAACGAAAGTAGCCTC----ACTAA---------CT
66
+ i fr1.chrUn C 0 N 0
67
+ s danRer4.chrM 1032 378 + 16596 CCGACCTTTTGATCAGCTTTTACCTAATTTACACATGCAAGTCTCCGCACCCCTGTG-AA-TACGCCCTCAATCCCCAAACCT--------GGGGACGAGGAGCAGGTATCAGGCACAA-A------ATT--TTTAGCCCAAGACGCCTAGCCA-AGCCACACCCCCAAGGGGATCCAGCAGTGACAAACATTAAGCTATAAGTG---AAAACTTGACTCAGTTA-AGGTA---A-AGAGAGCC-GGTAAAACTCGTGCCAGCAACCGCGGTTAAACGAGAGGCTCTAGTTGAT-ATACTA-CGGCGTAAAGGGTGGTTAAG---------GAACAATGTAAAATAAAGCCAAACGGCCCTTTA-ACTGT-TATACGCTTTTAGAT-GCTAG-AGGCCCAAACACGAAAGTAGCTTT----A--AA---------TT
68
+ i danRer4.chrM C 0 I 6
69
+
70
+ a score=1731261.000000
71
+ s mm8.chrM 460 260 + 16299 TATA--ATACACGACAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCATAAACCTAAATAATTAAATTTAACA-AAAC-TATTTGCCAGAGAACTACTAG--CCATAGCTTAAAACTCAAAGGACT---TGGCGGTACTTTATATCCATCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGCTCTACCTCACCATCTCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAACCCTAA--AAAGGTATTAAAGT
72
+ s oryCun1.scaffold_140182 577 256 + 20791 TCGA--ACTCACGATAGCTAAGGCCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACTTTGATAATTTCA--TAACA-AAAT-TATTCGCCAGAGAACTACAAG--CCAAAGCTTAAAACTCAAAGGACT---TGGCGGTGCTTTATACCCACCTAGAGGAGCCTGTTCCGTAATCGATAAACCCCGATAAACCTTACCACTCTTTGCCAACTCAGCCTATATACCGCCATCTTCAGCGA--CCTAA--AAAGGAGAAAAAGT
73
+ i oryCun1.scaffold_140182 C 0 C 0
74
+ s rn4.chrM 459 261 + 16300 TATATAATGCACGATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTTAATAATTAAACCTA-CA-AAAT-TATTTGCCAGAGAACTACTAG--CTACAGCTTAAAACTCAAAGGACT---TGGCGGTACTTTATATCCATCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGTTCTACCTTACCCCTTCTCGCTAATTCAGCCTATATACCGCCATCTTCAGCAAACCCTAA--AAAGGCACTAAAGT
75
+ i rn4.chrM C 0 C 0
76
+ s hg18.chrM 1044 256 + 16571 CTGA--ACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAA-TCAACA-AAAC-TGCTCGCCAGAACACTACGAG--CCACAGCTTAAAACTCAAAGGACC---TGGCGGTGCTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGC----TCAGCCTATATACCGCCATCTTCAGCAAACCCTGA-TGAAGGCTACAAAGT
77
+ i hg18.chrM C 0 C 0
78
+ s panTro2.chrM 460 256 + 16554 CTGA--ATACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACTTCAACAGTTAAA-TTAACA-AAAC-TGCTCGCCAGAACACTACGAG--CCACAGCTTAAAACTCAAAGGACC---TGGCGGTGCTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCGCCTCTTGC----TCAGCCTATATACCGCCATCTTCAGCAAACCCTGA-TGAAGGTTACAAAGT
79
+ i panTro2.chrM C 0 C 0
80
+ s rheMac2.chr5 34435838 239 - 182086969 CTGA--AGACACAATAGCTAAGATCGAAACTTGGATTAGATACCCCACTATGCTCAGCTCTAAACTCTAATAGTTAGA-TTAACA-AAAC-CACTCGCCAGAGTACTACAAG--AAACAGCTGAAAACTCAAAGGACT---TGGTGGTGCTTTATATCCCCCTAGAGGAGCCTGTTCTAT-ATTGATAAACCCTGATGCACCTCAGTACCTCTTGCCA--CCAGCCTATATACCGCCATCTTCAGCAAACCC-------------------
81
+ i rheMac2.chr5 C 0 I 233
82
+ s bosTau2.chrM 819 258 + 16338 CCGA--C-GCACTATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACACAGATAATTACA-TAAACA-AAAT-TATTCGCCAGAGTACTACTAG--CAACAGCTTAAAACTCAAAGGACT---TGGCGGTGCTTTATATCCTTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATAAACCTCACCAATTCTTGCTAATACAGTCTATATACCGCCATCTTCAGCAAACCCTAA--AAAGGAAAAAAAGT
83
+ i bosTau2.chrM C 0 C 0
84
+ s canFam2.chrM 461 258 + 16727 CTGA--CTACACGATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACATAGATAATTTTA-C-AACA-AAAT-AATTCGCCAGAGGACTACTAG--CAATAGCTTAAAACTCAAAGGACT---TGGCGGTGCTTTATATCCCTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATAAACCTCACCACCTTTCGCTAATTCAGTCTATATACCGCCATCTTCAGCAAACCCTCA--AAAGGTAGAACAGT
85
+ i canFam2.chrM I 1 C 0
86
+ s dasNov1.scaffold_23239 4270 258 - 16977 CTGA--CTACACGATAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAACTAAAACAGTT-CA-CAAACA-AAAC-TGTTCGCCAGAGTACTACTAG--CAACAGCTTAAAACTCAAAGGACT---TGGCGGTGCTTTACATCCTTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATATACCTCACCACCCCTTGCTAATACAGCCTATATACCGCCATCTTCAGCAGACCCTAG--TAAGGCACCACAGT
87
+ i dasNov1.scaffold_23239 C 0 C 0
88
+ s loxAfr1.scaffold_36650 3473 259 + 16266 CTAA--ACATACGATAGCTAGGGTACAAACTGAGATTAGATACCTCACTATGCCTAGCCCTAAACTTTGATAGCTACC-TTTACA-AAGC-TATCCGCCAGAGAACTACTAG--CCAGAGCTTAAAACTTAAAGGACT---TGGCGGTGCTTTATATCCACCTAGGGGAGCCTGTCTCGTAACCGATGAACCCCGATATACCTTACCGTCACTTGCTAATTCAGTCCATATACCACCATCTTCAGCAAACCCCTA--TAGGGCACAAAAGT
89
+ i loxAfr1.scaffold_36650 C 0 C 0
90
+ s echTel1.scaffold_49882 716 260 - 7170 CTGA--ACCCACGATAGCTAAGAAACAAACTGGGATTAGATACCCCACTATGCTTAGCCTTAAACCTAGATAGT--CT-ATAACA-AGACATATCCGCCAGAGAACTACTAG---CAAAGCTAAAAACTTAAAGAACTCTGTGGCGGTGCTTCACACCCACCTAGAGGAGCCTGTTATGTAATTGATACACCCCACTAAACCCTACCACCACTTGCTAAGTCAGTCTATATACCGCCATCCTCAGCAAAACCCCA--AAAGGCATATCAGT
91
+ i echTel1.scaffold_49882 C 0 C 0
92
+ s monDom4.chrUn 117151893 257 + 174229318 CTGA---TACACGAAAACTAAGGTACAAACTGGGATTAGATACCCCACTATGCTTAGTCATAAACCAAAGTAGTTAGA--TAACA-AAAC-TACTCGCCAGAGAACTACTAG--CTACTGCTTAAAACTCAAAGGACT---TGGCGGTGCCCTAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATATACCCAACCCCATCTTGCCAATACAGCCTATATACCGCCATCGTCAGCCCACCTTAA--AAAAGATACAAAGT
93
+ i monDom4.chrUn C 0 C 0
94
+ s galGal2.chrM 1704 263 + 16775 TTTA--ACCCACGAAAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAATCTAGATACCTCCC-ATCACA-CATG-TATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACT---TGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAATCCACGATTCACCCAACCACCCCTTGCCAGCACAGCCTACATACCGCCGTCGCCAGCCCACCTCTAATGAAAGAACAACAGT
95
+ i galGal2.chrM C 0 C 0
96
+ s xenTro2.scaffold_18005 1342 254 + 3405 CTGA--ACTCACGACCGCTAGGAAACAAACTGGGATTAGATACCCCACTATGCCTAGCCTTAAACCTTGAC-----CA-ATTACA-CTTC-AATCCGCCAGGGAACTACGAG--CCCAAGCTTAAAACCCAAAGGACT---TGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATACCCCCCGCTTAACCTCACCACTTCTTGCCAAACCCGCCTATATACCACCGTCGCCAGCCCACCCCGT--GAGGGGACACAAGT
97
+ i xenTro2.scaffold_18005 C 0 C 0
98
+ s tetNig1.chrUn_random 103510215 258 + 171761319 TTGA--ACCCACGAAAGCTAGGGTACAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAACAATGATATTCTAA---TACATTCCT-TATCCGCCCGGGTACTACGAG--CATTAGCTTAAAACCCAAAGGACT---TGGCGGTGCTTTAAACCCATCTAGAGGAGCCTGTTCTAGAACCGATAATCCCCGTTAAACCTCACCCCTTCTTGTCTAATCCGCCTATATACCACCGTCGTCAGCCTACCCTGT--GAAGGACTAACAGT
99
+ i tetNig1.chrUn_random C 0 C 0
100
+ s danRer4.chrM 1416 257 + 16596 CTGA--ACCCACGAAAGCTAAGAAACAAACTGGGATTAGATACCCCACTATGCTTAGCCATAAACAAAGACATTTAAT---CACA-ACAA-TGTTCGCCCGGACACTACAAG--CATAAGCTTAAAACCCAAAGGACC---TGACGGTGCCTTAGATCCCCCTAGAGGAGCCTGTTCTAGAACCGATTATCCCCGTTAAACCTCACCATTTCTAGCAAAATCAGCCTATATACCACCGTCGCCAGCTTACCCTGT--GAAGGAATAACAGT
101
+ i danRer4.chrM I 6 C 0
102
+
103
+ a score=-15759.000000
104
+ s mm8.chrM 720 22 + 16299 AAGCAAAAGAAT---------------------------------CAAACAT-------------------------------------------------------------AAA
105
+ s oryCun1.scaffold_140182 833 20 + 20791 AAGCTCAATTA----------------------------------CTACCGT--------------------------------------------------------------AA
106
+ i oryCun1.scaffold_140182 C 0 C 0
107
+ s rn4.chrM 720 21 + 16300 AAGCACAAGAA----------------------------------CAAACAT-------------------------------------------------------------AAA
108
+ i rn4.chrM C 0 C 0
109
+ s hg18.chrM 1300 21 + 16571 AAGCGCAAGTA----------------------------------CCCACGT-------------------------------------------------------------AAA
110
+ i hg18.chrM C 0 C 0
111
+ s panTro2.chrM 716 21 + 16554 AAGCACAAGTA----------------------------------CCCACGT-------------------------------------------------------------AAA
112
+ i panTro2.chrM C 0 C 0
113
+ s rheMac2.chr5 34436310 116 - 182086969 aagcaggagaatggcgtgaacccgggaggtggagcttgcagtgagcccagatcaggccactgtagtccagcctgggcaacagagtgagactctgtctcaaaaaacaaaaaacaaaa
114
+ i rheMac2.chr5 I 233 C 0
115
+ s bosTau2.chrM 1077 22 + 16338 AAGCGTAATTAT---------------------------------GATACAT-------------------------------------------------------------AAA
116
+ i bosTau2.chrM C 0 C 0
117
+ s canFam2.chrM 719 22 + 16727 AAGCACAATCAT---------------------------------TTTACAT-------------------------------------------------------------AAA
118
+ i canFam2.chrM C 0 C 0
119
+ s dasNov1.scaffold_23239 4528 21 - 16977 GAGCACAATAA----------------------------------CATACAT-------------------------------------------------------------AAA
120
+ i dasNov1.scaffold_23239 C 0 C 0
121
+ s loxAfr1.scaffold_36650 3732 22 + 16266 GAGCTTAATCAT---------------------------------AACCCAT-------------------------------------------------------------GAA
122
+ i loxAfr1.scaffold_36650 C 0 C 0
123
+ s echTel1.scaffold_49882 976 22 - 7170 AAGCATAATGAT---------------------------------AAGACAT-------------------------------------------------------------AAA
124
+ i echTel1.scaffold_49882 C 0 I 1561
125
+ s monDom4.chrUn 117152150 23 + 174229318 AAGCAAAATTATT--------------------------------TTTTCAT-------------------------------------------------------------AAA
126
+ i monDom4.chrUn C 0 C 0
127
+ s galGal2.chrM 1967 22 + 16775 GAGCTCAATAGC---------------------------------CCCTCGC-------------------------------------------------------------TAA
128
+ i galGal2.chrM C 0 C 0
129
+ s xenTro2.scaffold_18005 1596 22 + 3405 AGGCTCAATGAT---------------------------------CAAACAT-------------------------------------------------------------CAA
130
+ i xenTro2.scaffold_18005 C 0 C 0
131
+ s tetNig1.chrUn_random 103510473 22 + 171761319 AGGCAAAGTTGG---------------------------------CACAGCC-------------------------------------------------------------CAA
132
+ i tetNig1.chrUn_random C 0 C 0
133
+ s danRer4.chrM 1673 22 + 16596 AAGCAAGATGGG---------------------------------CATAGCC-------------------------------------------------------------CAG
134
+ i danRer4.chrM C 0 C 0
135
+
136
+ a score=558754.000000
137
+ s mm8.chrM 742 124 + 16299 AACGTTAGGTCAAGGTGTAGCCAATGAAATGGGAAGAAATGGGCTACATTTTCT---TA-TA--AAAGAACATT-----ACTATACCCTTT--ATGAAA----CTAAAG--GACTAAGGAGGATTTAGTAGTAAATTAAGAAT-
138
+ s oryCun1.scaffold_140182 853 123 + 20791 AACGTTAGGTCAAGGTGTAGCTCATAGAGTGAGA--GCATGGGCTACATTTTCT---AC-TT---CAGAATATA-----CGAATTGCCCTT--ATGAAAC--TCTAAGG--GCCAAAGGAGGATTTAGTAGTAAATTAAGAAT-
139
+ i oryCun1.scaffold_140182 C 0 C 0
140
+ s rn4.chrM 741 125 + 16300 AACGTTAGGTCAAGGTGTAGCCAATGAAGCGGAAAGAAATGGGCTACATTTTCT---TT-TCCCAGAGAACATT-----ACGA-AACCTTT--ATGAAA----CTAAAG--GACAAAGGAGGATTTAGTAGTAAATTAAGAAT-
141
+ i rn4.chrM C 0 C 0
142
+ s hg18.chrM 1321 124 + 16571 GACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCT---AC-CC---CAGAAAACT-----ACGATAGCCCTT--ATGAAAC---TTAAGG--GTCGAAGGTGGATTTAGCAGTAAACTGAGAGT-
143
+ i hg18.chrM C 0 C 0
144
+ s panTro2.chrM 737 124 + 16554 GACGTTAGGTCAAGGTGTAGCCTATGAGGTGGCAAGAAATGGGCTACATTTTCT---AC-CC---CAGAAAATT-----ACGATAACCCTT--ATGAAAC---CTAAGG--GTCAAAGGTGGATTTAGCAGTAAACTAAGAGT-
145
+ i panTro2.chrM C 0 C 0
146
+ s rheMac2.chr5 34436426 127 - 182086969 aaTGTTAGGTCAAGGTGTAGCCCATGAAGTGGCATGAAATGGGCTACATTTTCT---ATGTC---CAGAAAATT--T-CACAACAACCTTT--ATGAAAT---CTAAGA--GCTCAAGGAGGATTTAGCAGTAAACCAAGAGC-
147
+ i rheMac2.chr5 C 0 C 0
148
+ s bosTau2.chrM 1099 128 + 16338 AACGTTAGGTCAAGGTGTAACCTATGAAATGGGAAGAAATGGGCTACATTCTCT---ACACC---AAGAGAATCAAG-CACGAAAGTTATT--ATGAAA----CCAATA--ACCAAAGGAGGATTTAGCAGTAAACTAAGAAT-
149
+ i bosTau2.chrM C 0 C 0
150
+ s canFam2.chrM 741 125 + 16727 AAAGTTAGGTCAAGGTGTAACTTATGAGGTGGGAAGAAATGGGCTACATTTTCT---AC-CC---AAGAACATT--T-CACGAATGTTTTT--ATGAAA----TTAAAA--ACTGAAGGAGGATTTAGTAGTAAATTAAGAAT-
151
+ i canFam2.chrM C 0 C 0
152
+ s dasNov1.scaffold_23239 4549 126 - 16977 GACGTTAGGTCAAGGTGTAGCTTATGGGGTGGGAAGAAATGGGCTACATTTTCT---AA-TA---AAGAGCAAA----TACAAAAAACTTA--ATGAAACAATTTAAGA----CTAAGGTGGATTTAGTAGTAAGCTAAAAAT-
153
+ i dasNov1.scaffold_23239 C 0 C 0
154
+ s loxAfr1.scaffold_36650 3754 126 + 16266 AAAGTTAGGCCGAGGTGTCGCCTACGTGACGGTCAAAGATGGGCTACATTTTCT---AT-TA---TAGAACAGA--CAAACGGATATCACT--CTGAAA----TGGGTG--GTTGAAGGCGGATTTAGTAGTAAACTAAGAAT-
155
+ i loxAfr1.scaffold_36650 C 0 C 0
156
+ s echTel1.scaffold_181343 2 129 + 18297 AACGTTAGGTCAAGGTGTAACCCATGTGGTGGAACCTAATGGGCTACATTTTCTAGCAT-TA---GAAAACCTT--C-AACGAAAGTACTA--ATGAAA----TTTCAGT-ACTAAAGGAGGATTTAGTAGTAAACTGAGAAT-
157
+ i echTel1.scaffold_181343 n 1561 C 0
158
+ s monDom4.chrUn 117152173 125 + 174229318 AACGTTAGGTCAAGGTGTAGCATATGATAGGGAAAGAAATGGGCTACATTATCT---AG-CT---TAGATTACA------CGAATCACATT--ATGAAAT---CTAATGTGCCTGAAGGAGGATTTAGTAGTAAATTAAGAAT-
159
+ i monDom4.chrUn C 0 C 0
160
+ s galGal2.chrM 1989 122 + 16775 TAAGACAGGTCAAGGTATAGCCTATGGGGTGGGA-GAAATGGGCTACATTTTCT---AA-CA---TAGAACAAA------CGAAAAAGGAT--GTGAAAC---CCGCCC--TTAGAAGGAGGATTTAGCAGTAAAGTGAGATC-
161
+ i galGal2.chrM C 0 C 0
162
+ s xenTro2.scaffold_18005 1618 123 + 3405 TACGTCAGGTCAAGGTGTAGCANATGAAGTGGGAAGAAATGGGCTACATTTTCT---AA-TA--CTAGAAAAAA-----CGAAAGATCTTT--ATGAAAC---C--AGA--TCAGAAGGCGGATTTAGCAGTAAAGAGAGACA-
163
+ i xenTro2.scaffold_18005 C 0 N 0
164
+ s tetNig1.chrUn_random 103510495 123 + 171761319 AACGTCAGGTCGAGGTGTAGCGTATGGAGGGGGAAGAAATGGGCTACATTCTCT---GC-CC---AGAGAACCA------CGAATGACATA--ATGAAA----CACATG--TCTGAAGGAGGATTTAGCAGTAAGTAAAGAAAC
165
+ i tetNig1.chrUn_random C 0 C 0
166
+ s danRer4.chrM 1695 122 + 16596 AAAGTCAGGTCGAGGTGTAGCACATGAAATGGGAAGAAATGGGCTACACTTTCT---AC-CC---CAGAATATA------CGAA-AATGTAACATGAAA----CA-ATA--CTTGAAGGAGGATTTAGCAGTAAA-AGAGAAGC
167
+ i danRer4.chrM C 0 C 0
168
+
169
+ a score=2286094.000000
170
+ s mm8.chrM 866 631 + 16299 AGA------GAGCTTAATTGAATTGAGCAATGAAGTACGCACACACCGCCCGTCACCCTCCT--CAAAT----------TA-AATTAAACTTAACA-TA---AT-TAATTTCTAGACATCCGTTT-ATG-AGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGAAT--A-ATCATAGTGTAGCT-TA-A-TATTAAAGCATCTGGCCTACACCCAGAAGAT---TTCATGACCAA--TGAACACTCTGA-AC--TAATC-----CTAGCCCTA--G-CCC-TA---------CACAAATAT--AA---------TTA-TACT--ATTAT------------ATAAATCAAAACATT-TATCC--TA-----CTAAAAGTATTGGAGAAAGAA-----AT-----TCGTACATCTAGGAGCTATAGAA----CTAGTACCGCAAGGGAAA-GATGAAA-G--ACTAATTAA------------AAGTAAGAACAAG-CAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAG-AAAACTTCTAACTAAAAGAATTACAGCTAGAAACCCCGAAA-CCAAACGAGCTACCTAAAAACAATTT-----T--AT---GAATCAACTCGTCTATGTGGCAAAATAGTGAGAAGATTTTTAGGTAGAGGTGAAAAGCCTAACGAGCTTGGTGATAGCTGGTTACCCA-AAAA-ATGAATTTAAGTTCAATTTTAAA------C-------TTGCTA------------------AAAA------AA-CAA
171
+ s oryCun1.scaffold_140182 976 628 + 20791 AGA------GTGCTTAATTGAACAAGGCCATGAAGCACGCACACACCGCCCGTCACCCTCCT--CAAGT-------------GACAAATATTTACT-TATACCT-AATTACATAAATAGACAAGC-ATA-AGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGACA--C-TTCAGAGCGTAGCT-TA-A--CTTAAAGCACTTGGCTTACACCCAAGAGAT---TTCAT--TTAC--TGACCACTCTGA-GC--CAACA-----CTAGCCCTA--T-GA---A----------ACTAACACTGAA---------CCA-GAGTA-ATTAG------------CTAAACTAAACCATT-CACCC--CAT---ATTAAAAGTATAGGAGATAGAA-----AT-----TTA--TATCCAGGCGCTATAGAG----AAAGTACCGTAAGGGAAA-GATGAAA-G--ATTAGTTAA------------TAGCACAAAAAAG-CAGAGATTACTTCTCTTACCTTTTGCATAATGAATTAGCTAG-AAAATCCTTAGCAAAAAGAATTTTAGTTAAGAACCCCGAAA-CCAGACGAGCTATTTATGAGCAGTTG-----A--AA---GAACGAACCCGTCCATGTGGCAAAATGGTGGGAAGACTTGTAAATAGAGGTGAAAAGCCAACCGAGCCTGGTGATAGCTGGTTGTCCA-GAAT-A-GAATTTTAGTTCAACTTTAAA------T-------TTTCCT------------------AAAG------GA-CAT
172
+ i oryCun1.scaffold_140182 C 0 C 0
173
+ s rn4.chrM 866 628 + 16300 AGA------GAGCTTAATTGAATAGAGCAATGAAGTACGCACACACCGCCCGTCACCCTCCT--CAAAT----------TA-GATTGACATTCACA-TATACAT-AATTTCACTAACA--AATTT-ATG-AGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGAAT--A-ATCACAGTGTAGCT-TA-A-TCACAAAGCATCTGGCCTACACCCAGAAGAA---TTCATAAAAAA--TGAACACTTTGA-AC--TAACC-----CTAGCCCTA--C-AAC-CA----------ACCAACAT--AA---------CTA-AACC--CCCAC------------ATAAACTAAAACATT-TAACT--CA-------AAAAGTATTGGAGAAAGAA-----AT-----TTACTTACC-AAGAGCTATAGAG----AAAGTACCGCAAGGGAAATGATGAAA-G--ACTAATTTA------------AAGTAAAAACAAGACAAAGATTAAACCT-GTACCTTTTGCATAATGAATTAACTAG-AAAATCCTTAACAAAAAGAATTTAAGCTAAGAACCCCGAAA-CCAAACGAGCTACCTAAAAACAATTT-----C--AT---GAATCAACCCGTCTATGTAGCAAAATAGTGGGAAGATTTTTAGGTAGAGGTGAAAAGCCTATCGAGCTTGGTGATAGCTGGTTGCCCA-AAAA-A-GAATTTCAGTTCAAACTTTAA------G-------CTTCCA------------------TCAG------AA-CAA
174
+ i rn4.chrM C 0 C 0
175
+ s hg18.chrM 1445 625 + 16571 AGA------GTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCT--CAAGTA---------TA-CTTCAAAGGACATT-TA---AC-TAAAACCCCTACG--CATTT-ATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACG--A-ACCAGAGTGTAGCT-TA-A--CACAAAGCACCCAACTTACACTTAGGAGAT---TTCAACTTAAC-TTGACCGCTCTGA-GC--TAAAC-----CTAGCCCCA--A-ACC-CA----------CTCCACCT--TA---------CTA-CCAG--ACAAC------------CTTAGCCAAACCATT-TACCC--AA------ATAAAGTATAGGCGATAGAA-----AT-----TGA--AACC-TGGCGCAATAGAT----ATAGTACCGCAAGGGAAA-GATGAAA-A--ATTATAACC------------AAGCATAATATAG-CAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAG-AAATAACTTTGCAAGGAGAGCCAAAGCTAAGACCCCCGAAA-CCAGACGAGCTACCTAAGAACAGCTA-----A--AA---GAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCA-AGAT-A-GAATCTTAGTTCAACTTTAAA------T-------TTGCCC------------------ACAG------AA-CCC
176
+ i hg18.chrM C 0 I 2
177
+ s panTro2.chrM 861 626 + 16554 AGA------GTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCT--CAAGTA---------TA-CTTCAAAGGATACT-TA---ACTTAAACCCCCTACG--TATTT-ATATAGAGGAGATAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACG--A-ACCAGAGTGTAGCT-TA-A--CATAAAGCACCCAACTTACACTTAGGAGAT---TTCAACTCAAC-TTGACCACTCTGA-GC--CAAAC-----CTAGCCCCA--A-ACC-CC----------CTCCACCC--TA---------CTA-CCAA--ACAAC------------CTTAACCAAACCATT-TACCC--AA------ATAAAGTATAGGCGATAGAA-----AT-----TGT--AAAC-CGGCGCAATAGAC----ATAGTACCGCAAGGGAAA-GATGAAA-A--ATTATACCC------------AAGCATAATACAG-CAAGGACTAACCCCTGTACCTTTTGCATAATGAATTAACTAG-AAATAACTTTGCAAAGAGAACCAAAGCTAAGACCCCCGAAA-CCAGACGAGCTACCTAAGAACAGCTA-----A--AA---GAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCA-AGAT-A-GAATCTTAGTTCAACTTTAAA------T-------TTACCT------------------ACAG------AA-CCC
178
+ i panTro2.chrM C 0 I 2
179
+ s rheMac2.chr5 34436553 630 - 182086969 AGA------GTGCTTGGTTGAATAAGACCATGAAGCATGCACACACCACCCGTCACCCTCCT--CAAATA--------TTA-CTGTAGAAATCACTATT---AC-TAATAGTTTTATA--TGCAC-ATATAGAAGAGATAAGTTGTAACATGTTAGGCATACTGGCAAGTGTGCTTGGACA--A-ACCAAAGTGTAGCT-TA-A--ACCAAAGCATCTGGCTTACACCTGGAAAAT---TTCACTGTGAA-CTGATCACTTTGA-GC--TAACT-----CTAGTACCA--A-ACCTCG----------CTAAAAAA--TA---------TTA-TTAA--ACTAT------------CTTAATCAGGTGATT-TACTTTAGA------AAAAAGTATAGGTGATAGAA-----AT-----TTT--TACCATGGCGCAATAGAC----ATAGTACCATAAGGGAAA-GATGAAAGA--ACTATA-TC------------AAGCACTAAAAAG-CAAAGACAAGCCCTCATACTTTCTGCATAATGTATTAACTAG-AAAT-ACTTTACACAGAGAACTATAGCCAAGTCCCCCAAAA-ACAGACGAGCTACCCAAGAATAACTG-----A--AA---GAGCACACTCATCTATGTGGCAAAGTAGTGGGAAGATTCAGCAGCAGCGGTGACAAGCCTACCAAGCCTGGTGATAGCTGGTTATCCA-AGAT-A-GAATCTTAATTCAACTTTAAA------C-------TTAGCC------------------ACAG------AA-TTA
180
+ i rheMac2.chr5 C 0 I 1
181
+ s bosTau2.chrM 1227 638 + 16338 AGA------GTGCTTAGTTGAATTAGGCCATGAAGCACGCACACACCGCCCGTCACCCTCCT--CAAATAG--ATTCAGTG-CATCTAACCCTATT-TA---AA-CGCACTAGCTACA--TG--------AGAGGAGACAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGATA--A-ATCAAGATATAGCT-TA-A---ACAAAGCATCCAGTTTACACCTAGAAGAC---TTCATTCATTA--TGAATATCTTGA-AC--TAGAC-----CTAGCCCAAAGA-TAC-CC----------TCTCGACT--AA---------ACA-ACCAAGATAGA------------ATAAAACAAAACATT-TAATC--CCA---ATTTAAAGTATAGGAGATAGAA-----AT-----CTA--AGTA-CGGCGCTATAGAG----AAAGTACCGCAAGGGAAC-GATGAAA-GAAAAAAACTAA------------AAGTATAAAAAAG-CAAAGATTACCCCTTGTACCTTTTGCATAATGAATTAACTAGTATAAGACTTAACAAAATGAATTTTAGCTAAGCAGCCCGAAA-CCAGACGAGCTACTCACAAACAGTTT-----ACCAA---GAACTAACTCATCTATGTGGCAAAATAGTGAGAAGATTTGTAAGTAGAGGTGACATGCCTAACGAGCCTGGTGATAGCTGGTTGTCCAGAAAA-T-GAATCTAAGTTCAGCTTTAAA------G-------ATACCA------------------AAAAT----TCA-AAT
182
+ i bosTau2.chrM C 0 C 0
183
+ s canFam2.chrM 866 628 + 16727 AGA------GAGCTTAATTGAATAGGGCCATGAAGCACGCACACACCGCCCGTCACCCTCCT--CAAGTA---ATAAGACA-CAACCATAACCATA-TT---AA-CTTAACTAAAACA--CA--------AGAGGAGACAAGTCGTAACAAGGTAAGCATACCGGAAGGTGTGCTTGGATT--A-ATCAAAGTGTAGCT-TA-A---CTAAAGCGTCTGGCCTACACCCAGAAGAT---TTCATTACTTA--TGGCCACTTTGA-AC--AAAAG-----CTAGCCCAA--C-TAA-CC----------CCAAACTT--AA---------GTA-TTACAGACA-C------------ATAAAATAAAACATT-TAGTT--AAA--CAATAAAAGTATAGGAGATAGAA-----AT-----TTT--AAT--TGGAGCGATAGAG----ATAGTACCGTAAGGGAAT-GATGAAA-G--ACATCTTAA------------CAGTATTAAACAG-CAAAGATTACCCCTTCTACCTTTTGCATAATGAACTAGCCAG-AAACAACTTAACAAAGAGAACTTAAGCTAAGCTCCCCGAAA-CCAGACGAGCTACCCATAAACAATCT-----A-AAA---GGATCAACTCATCTATGTAGCAAAATAGTGAGAAGATTTGTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCACAGAC-A-GAATTTTAGTTCAACTTTAAA------T-------TTACCt------------------aaaa------aa-aat
184
+ i canFam2.chrM C 0 C 0
185
+ s dasNov1.scaffold_23239 4675 637 - 16977 AGA------GAGTTTAGCTGAACCAGGCCATAAAGCACGCACACACCGCCCGTCACCCTCTT--CAATTAT--AAGCGCCA-CATAAACTAAAACA-C----AT-TAATTCAGTAGCA--ACTAT-ATA-AGAAGAGACAAGTCGTAACAAGGTAAACATACTGGAAAGTGTGTTTGGAT---A-ACCAAAGTGTAGCT-TA-C-AACCAAAGCATCCGGCTTACACCCAGAAGAC---TTCAGATAGAC--TGACCACTTTGA-AC--TAGAC-----CTAGCCCTA--A-ACC-CA---------CAACAACAA--TA---------CTA-TCAC--ACAGC-----------AATAAATCAAAACATT-TACCA--AATACTAACTAAAGTATAGGAGATAGAA-----AT-----TTT--ACTA-AGGCGCTATAGAA----ATAGTACCGCAAGGGAAA-GATGAAA-G--ACCCCCTGA------------TAGTAAGAAACAG-CAAAGACTAATACTTTTACCTTTTGCATAATGAATTAACTAG-ACTAATTTTGGCAAAGAGAACTTTAGTCAAATATCCCGAAA-CCAGACGAGCTACTTATGGACAGTAA-----T--TA---GTACTAACTCATCTATGTCGCAAAATAGTGAGAAGATCTGTAAGTAGAGGTGAAAGACCAACCGAGCCTGGTGATAGCTGGTTGCCCA-GAAC-A-GAATTTTAGTTCAACTTAAAA------C-------TTATCT------------------CAAG------AA-CCA
186
+ i dasNov1.scaffold_23239 C 0 I 4
187
+ s loxAfr1.scaffold_36650 3880 627 + 16266 AGA------GAGCTTAATTGAACAAGGCTATGAAGCGCGTACACACCGCCCGTCACTCTCCT--CAAGTATCCCCACATCA-----AACAATCATA-TT---AC-AG--ATTTAAACA--AATAC-A---AGAGGAGACAAGTCGTAACAAGGTAAGCGTACTGGAAAGTGCGCTTGGATA--A-CTCAAAGTGTAGCT-TA-A--CAAAAAGCATCTGGCTTACACCTAGAAGAC---CTCATTTACAA--TGATCACTTTGA-AC--TAAAT-----CTAGCCCTA--C-CAA-CC----------CTACACTC--AA---------TTC-TCAT--ATTAT-----------ATTAAATCAAAACATT-CACTT--AC-----CAAAAAGTATAGGAGATAGAA-----AT-----TTC--ACTA-AGGCGCAATAGAG----ATAGTACCGCAAGGGAAT-GATGAAA-G--ATAGTTTAA------------TAGTAAAAAATAG-CAAGGATTAACCCCTTTACCTTTTGCATAATGAATTAACTAG-AAAA-ATCTGACAAAGAGAACTATAGCCAGAAACCCCGAAA-TCAGACGAGCTATCTGATAGTAATCC-----C--CA---GGATCAATTCATCTATGTGGCAAAATAGTGAAGAAACTTACAGATAGAGGTGAAATACCAATCGAGCCTGATGATAGCTGGTTGTCCA-GAAATA-GAATTTTAGTTCTACCTAAAA------C-------TTACCA------------------CAAA------AACAAA
188
+ i loxAfr1.scaffold_36650 C 0 C 0
189
+ s echTel1.scaffold_181343 131 630 + 18297 AGA------GTGCTCAGTTGAAACTGGCCATGAAGCGCGCACACACCGCCCGTCACCCTCCT--TA---ATTTATATATTATAAGTAACCTCCATA--A---AC-AGCTACTTATACA--CCCCA-T---AAAGGAGACAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGAAA--ACCTCAAAACGTAGCT-TA-A--T-AAAAGCATCTGGCCTACACCCAGAAGAT---TTCA-TGACAC--TGACCGTTTTGA-AC--TAAAT-----CTAGCCCAA--CTCAA-AT----------AGAAACTT--AA----------CC-AAAT--AAAAC-----------TTTAATATAAAACATT-TG-TA--GA-----CATAAAGTATAGGAGATAGAA---ATAT-----TCC--ATAG-ATGCGCTATAGAG----ATAGTACCGTAAGGGAAA-AATGAAA-G--ATAACTTAA------------TAGTACCAAAAAG-CAAAGCTTAAACCTTATACCTTTTGCATAATGAGTAAACTAG-AAAATTTTTGACAAAGGGAACTTTAGCCAAAAACCCCGAAA-CCAGACGAGCTACCCTAGAGCAATCT-----T-GTT---GGATCAACTCATCTATGTGGCAAAATAGTGAGAAGACTTTAAGGTAGAGGTGAAAAGCCAACCGAGCCTGGTGATAGCTGGTTGCCCA-AGAA-A-GAATTTAAGTTCGACCTAAAA------A-------TTACTA------------------CCAA------TA-ACt
190
+ i echTel1.scaffold_181343 C 0 C 0
191
+ s monDom4.chrUn 117152298 631 + 174229318 AGA------GTGCTTAATTGAATTAGGCAATAGGGCGCGCACACACCGCCCGTCACCCTCCT--CAACTC---------AA-CCTACAAAAATACT-TA---AT-AA-------TATA--TCTAA-GTAAAGAGGAGAAAAGTCGTAACACGGTAAGTGTACTGGAAAGTGCACTTGGAAT--A--TCAAAATGTAGCT-TA-ACTACTAAAGCATTTAGCTTACACCTAAAAGAT---TTCAGTTAATT-CTGACCATTTTGA-GC--CAATT-----ATAGCTCTA--A-CAA-TC----------TTCAAATA--AA---------CTATTTAT--ACACT------------TATATTTAAAACATT-TTAAT--TC------CCCTAGTATAGGAGATAGAACAGAAAC-----ATA--A----TGAAGCAATAACA----ATAGTACCGTAAGGGAAAAAATGAAA-G--ATAGATTGA------------TAGCATAAAAAAG-CAAAGATTAAACCTTGTACCTTTTGCATAATGATTTAGCCAG-TCAA-CATAGGCAAAAAGAATTTAAGCCTAGAACCCCGAAA-TTAAGTGAGCTACTATAGAACAGTTA-----TTTAT---GAACTTACTCCTCTATGTGGCAAAATAGTGAGAAGATTTTATAGTAGAAGTGAAAAACCTATCGAACTTAATGATAGCTGGTTATCCA-AAAT-ACGAATTTTAGTTCAACCTTAAG------T-------TTAACA------------------CAAAGCATACGA-TAT
192
+ i monDom4.chrUn C 0 C 0
193
+ s galGal2.chrM 2111 664 + 16775 ATACCCCCTAAGCTCACTTTAAGACGGCTCTGAGGCACGTACATACCGCCCGTCACCCTCTT--CACAAGCCATC----AA-CATCAATAAATATA-TA---CT-TCCCCTCCCGGCT--AA--------AGACGAGGCAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTAGACT--A--CCAAGGCGTAGCTATA-A-CTTCAAAGCATTCAGCTTACACCTGAAAGATACCCTCAACAGACA--AGGTCGCCTTGA-CT--TGCCCCCCCTCTAGCCCGA--C-AAA-CT----------CGTACCCT--TA---------ACA-TAAA--AAACT-TACCTCCCCCTCTTAACCAAAACATTATAAAT--TG------TCCCAGTATAGGCGATAGAA-----AA-----GAC--TACCCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAA-GATGAAA-T--AGCAATGAAAACCAT------AAGCAAAAAACAG-CAAAGACCAACCCTTGTACCTTTTGCATCATGATTTAGCAAG-AACA-ACCAAGCAAAGTGAGCTAAAGTTTGCCTTCCCGAAACCCAAGCGAGCTACTTGCGAGCAGCTA-----A--AATTTGAGCGAACCCGTCTCTGTTGCAAAAGAGCGGGATGACTTGCCAGTAGAGGTGAAAAGCCTACCGAGCTGGGTGATAGCTGGTTACCTG-TCAA-ACGAATCTAAGTTCCCCCTTAAC------C-------CACCCC------------------CTAA------AG-ACA
194
+ i galGal2.chrM C 0 I 23
195
+ s xenTro2.scaffold_18215 7 644 + 3330 AGA------GAGCTCTCTTTAA-ATGGCCCTGGGGCGCGCACACACCGCCCGTCACCCTTCTTCCAAAAACCACC----TA-CCTTAAATAAAACA-TT---AC-AA------AAACA--A---------AGAAGAGGCAAGTCGTAACATGGTAAGCGCACCGGAAGGTGCGCTTGGA------ATCAAAGTATAGCT-TA-A--CCTAAAGCCCCTCGCTTACACCGAGACGAT---ATCCGTTAAACCCAGATTACTTTGA-GCCATAAAC-----CTAGCCTTA--T-TAT-TT----------ACCAACAA--AAGATTACCCCCTA-CACCA-ACCCC------------ACCAACTAAACCATT-T---T--AA----ACTTTTAGTATAGGCGATAGAA-----AC-----AAG--TCT--AAGAGCTACATAT----CCAGTACCGCAAGGGAAA-GGTGAAA-T--AGAAATGAAACAAAT--AATAAAGCAACAAACAG-CAGAGAAAAACCCTCGTACCTTTTGCATAATGGTCTAGCAAG-TCCTAGTCAAGCAAAAAGAATTTAAGTTTGACCCCCCGAAA-CTAAGCGAGCTACTCCGAGACAGCTT-----T-TTA---GAGCCAACCCGTCTCTGTGGCAAAAGAGTGGGAAGATCTCCGAGTAGGGGTGACAGACCAAACGAGCTTAGTGATAGCTGGTTGCTCA-GGAA-ACGAATATAAGATCAACTCTAAG------TCCCGTTATTAGCA------------------AACA------AA-GCA
196
+ i xenTro2.scaffold_18215 N 0 C 0
197
+ s tetNig1.chrUn_random 103510618 674 + 171761319 AGA------GTGTCTTACTGAAACCGGCCATGAAGCGCGCACACACCGCCCGTCACTCTCCC--CAAAT----------CA-AACCCAC----CAA-TA---AT-TAATACACTATCA--CACACAA---AGGGGAGGCAAGTCGTAACATGGTAAGTGTACCGGAAGGTGCACTTGGAAA--A-ATCAGAATATAGCT-TAGA-TAGAAAAGCACCTCCCTTACACCGAGGAGCC---ACCCGTGCAAATCGGATTATTCTGACAC--CTAAT---AGCTAGCCCCT--C-CCC-CAAAAACAAAAAATAACTAT--TA---------ATA-CCCC--CTAATACACTTAATTAACCAAAACAAACCATT-TTTCC--CC-------CTAAGTATGGGCGACAGAA-----AAGGACCTAA---------GAGCTACAGAC----AAAGTACCGCAAGGGAAC-GCTGAAA-G--AGAAGTGAAACAACCCAGTTTAAGTACAAAAAAG-CAGAGATTAAACCTCGTACCTTTTGCATCATGATTTAGCCAG-CAAACCTTAGGCAAAGAGCACTTTAGTCTAATTCCCCGAAA-CTGGACGAGCTACTCCAAGACAGCCT-----TCATA---GGGCACATCCGTCTCTGTGGCAAAAGAGTGGAAAGAGCTTTGAGTAGAGGTGACAAACCTACCGAGCCCAGTAATAGCTGGTTGCCCG-AAAA-TTGAGTTTAAGCTCAGCTTTTTAGCTTCTT-------GCCTCACCAACAGTAAAAACACAA----------------
198
+ i tetNig1.chrUn_random C 0 C 0
199
+ s danRer4.chrM 1817 657 + 16596 AGA------GTGTCTCTTTGAACCCGGCTCTAAGGCGCGTACACACCGCCCGTCACTCCCTC--C-GGT----------CA-ATTGCACAAG-AAA-TA---AT-TAATACAGAAGCA--CAGAC-A---AGGGGGGAAAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTGGACATTA-TCCAAGACGTGGCT-GA-A-CAGTTAAGCATCTCACTTACACCGAGAAAAC---ATCCGTGCAAATCGGATCGTCCTGA-GC--TAAAT---AGCTAGCTTAA--C-CAT-CAAGATCAACTTAAAAACAT--CA---------ATA-ACCT--ATAATCAACCTAAAACCACAAACTAAACCATT-ATATT--AT-------CCTAGTATGGGAGACAGAA-----AAGA---TAA--AATA-CTAAGCAATAGAG----AAAGTACCGCAAGGGAAC-GCTGAAA-G--AGAAATGAAATAACCC-GTAAAAGCAATAAAAAG-CAAAGATTAAACCTTGTACCTTTTGCATCATGATTTAGCCAA-C-ACCACTAGGCAAAGAGACCTTTAGTTTAAAGCCCCGAAT-CCAGGTGAGCTACCCCGAGACAGCCTATTTAACTTA---GGGCCAACCCGTCTCTGTGGCAATAGAGTGGGAAGAGCTCCGGGTAGAAGTGACAGACCTATCGAACCCGGCAATAGCTGGTTGTCTG-GGAG-ATGAATAAAAGTTCAGCTTCGTA------C-------ACCCCa----------------------------------
200
+ i danRer4.chrM C 0 I 27
201
+
202
+ a score=160222.000000
203
+ s mm8.chrM 1497 81 + 16299 CAAAATCAAA------AAGTAAG----TTTAGATTATAGCCAAAAGAGGGACAGCTCTTCTGGAA--CGGAAAAAACCTT-TAATAGTGAATAA---------
204
+ s oryCun1.scaffold_140182 1604 81 + 20791 AAAA-CCCTA------ATGAAAA----TTTAAATGTTACTCTAAAGAGGGACAGCTCTTTAGATA-TAGGACACAGCCTT-TTATAAAGAGTAA---------
205
+ i oryCun1.scaffold_140182 C 0 M 1789
206
+ s rn4.chrM 1494 81 + 16300 CAAA-TCAAA------ATGTAAA----CTTAAAATATAGCCAAAAGAGGGACAGCTCTTTAGGAA-ACGGAAAAAACCTT-AAATAGTGAATAA---------
207
+ i rn4.chrM C 0 C 0
208
+ s hg18.chrM 2072 82 + 16571 TAAA-TCCCC------TTGTAAA----TTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAGGAAAAAACCTT-GTAGAGAGAGTAA---------
209
+ i hg18.chrM I 2 C 0
210
+ s panTro2.chrM 1489 82 + 16554 TAAA-TCCCC------TTGTAAA----CTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTAGACACTAGGAAAAAACCTT-GTAAAGAGAGTAA---------
211
+ i panTro2.chrM I 2 C 0
212
+ s rheMac2.chr5 34437184 76 - 182086969 TTAA-TTTCC------CAGTAAG----TGTAACTA-------ACTAAGGGACAGCTCTTTAGACCCTAGGAAACAACCTTCCTACAGAGAGTAA---------
213
+ i rheMac2.chr5 I 1 C 0
214
+ s bosTau2.chrM 1865 79 + 16338 -AAA-CCCCA------CTGTAGC----TTTAAAAGTTAGTCTAAAAAGGTACAGCCTTTTAGAAA-C-GGATACAACCTT-GACTAGAGAGTAA---------
215
+ i bosTau2.chrM C 0 C 0
216
+ s canFam2.chrM 1494 81 + 16727 aaaa-tttta------atgtaaa----tttaaaatataGTCTAAGAAGGTACAGCTTCTTAGAAT-CAGGATACAACCTT-TATTAGAGAGTAT---------
217
+ i canFam2.chrM C 0 C 0
218
+ s dasNov1.scaffold_23239 5316 82 - 16977 TTAA-TCTTA------ATATAAG----TTTTAAATATACTCAATAGAGGTACAGCTCCATTGAAACAGGTATTAAACCTG-CACAGGAGAGTAA---------
219
+ i dasNov1.scaffold_23239 I 4 C 0
220
+ s loxAfr1.scaffold_36650 4507 81 + 16266 ATAA-TTCCA------ATGTAAG----TTTTAGAGATATTCAAAAGGGGTACAGCTCTTTTGACC-AAGGATACAACCTT-GATTAGCGAGTAA---------
221
+ i loxAfr1.scaffold_36650 C 0 C 0
222
+ s echTel1.scaffold_181343 761 81 + 18297 ataa-attta------atgtaat----ttttagttataattaaaaGAGGTACAGCTCTTTTAATT-GAGGAAACAACCTT-ATTTAGAGAGTAA---------
223
+ i echTel1.scaffold_181343 C 0 C 0
224
+ s monDom4.chrUn 117152929 81 + 174229318 CAAA-GCATA------TCTTAGA----CTTAATAGTTAATCAAATGAGGGACATCTCATTTGATA-AAGTGGACAAACTT-CATAAGAGGGTAA---------
225
+ i monDom4.chrUn C 0 C 0
226
+ s xenTro2.scaffold_18215 651 75 + 3330 AAA-----------------AACACTTCTTAGAATTTATTCAACCAGGGTACAGCCTGGTTGAAA-CAGGATACAACCTA-CAACTATGGGTAA---------
227
+ i xenTro2.scaffold_18215 C 0 I 10
228
+ s tetNig1.chrUn_random 103511292 89 + 171761319 ------CCGATTTA--AAGAAAC----TAAAAAAGTTAGTCAAAGGGGGTACAGCCCCTCTGACC-CAAGAAACAACTTT-CCCAGGAGAATAAGGATCCTAA
229
+ i tetNig1.chrUn_random C 0 C 0
230
+ s danRer4.chrM 2501 91 + 16596 ------CAAAATTAAGAGAAAAA----TACGAAAGTTAGTTAAAGAGGGTACAGCCCCTTTAACA-AAGGATACAACCTT-TTCAGGAGAATAAAGATCATAA
231
+ i danRer4.chrM I 27 C 0
232
+ s galGal2.chrM 2798 72 + 16775 ----------------CGTTGGG----GTTAAGAGCAATTCGATGGGGGTACAGCTCCATCGAAA-AAGAACACAACCTC-CTCCAGCGGATAA---------
233
+ i galGal2.chrM I 23 C 0
234
+
235
+ a score=164919.000000
236
+ s mm8.chrM 1578 166 + 16299 TTAACAAAAC---------AGCTTTT--------------AACCAT-------TGTAGGCCTAAAAGCA-GCCACCAAT-AAAGAAAGCGTTCAAGCTCAACATAAAATTTCA-----ATTAATTCCA--TAA-------TTTACACCAA----------CT-TCCTAA-----ACT-TA-AAATTGGGTTAA-TCTATAACTTTATAGATGCAACACTGTTAGTATGAGT
237
+ s rn4.chrM 1575 163 + 16300 ACAACTACA----------ATCACTT--------------AACCAT-------TGTAGGCTTAAAAGCAAGCCATCAAT-AAAGAAAGCGT-CAAGCC--ACATCATCTTACACACACACTAATTCCA--CAA-------ACCTCAAAAA-----------T-TCCAAA-----ATT-AC-AAATTGGGCTAAATCTATGATCCTAGTGA----ATACTGTTAATATGTG-
238
+ i rn4.chrM C 0 C 0
239
+ s oryCun1.scaffold_116167 3974 163 + 15695 -------------------GTTATTTTC-----------AATCCAT-------AGTTGGCTTAAAAGCA-GCCATCAAT-TAAGAAAGCGTTAAAGCT---CAACAACTAAAA-----ACCAACTTAA--TAAGAATATTTTAAAACGAA----------CT-CTTATA-----AAC-CC-TAACTGGACTAA-TCTATAAATCTATAGAAGAAATAATGCTAATATAAGT
240
+ i oryCun1.scaffold_116167 n 0 C 0
241
+ s hg18.chrM 2154 159 + 16571 ------AAA----------ATTTAAC--------------ACCCAT-------AGTAGGCCTAAAAGCA-GCCACCAAT-TAAGAAAGCGTTCAAGCT---CAACACCC---------ACTACCTAAA--AAA-------TCCCAAACATATAAC---TGAA-CTCCTC-----ACA-CC-CAATTGGACCAA-TCTATCACCCTATAGAAGAACTAATGTTAGTATAAGT
242
+ i hg18.chrM C 0 C 0
243
+ s panTro2.chrM 1571 159 + 16554 ------AAA----------ATTTAAC--------------ACCCAT-------AGTAGGCCTAAAAGCA-GCCACCAAT-TAAGAAAGCGTTCAAGCT---CAACACCC---------ACAACCTTAA--AGA-------TCCCAAACATACAAC---CGAA-CTCCTT-----ACA-CC-CAATTGGACCAA-TCTATTACCCCATAGAAGAACTAATGTTAGTATAAGT
244
+ i panTro2.chrM C 0 C 0
245
+ s rheMac2.chr5 34437260 158 - 182086969 ------AAA----------ATATTAC--------------CACCAT-------AGATGGCCCAAAAGCA-ACCACCAGT-TAAGAAAGCATTTAAATT---CAACTTCT---A-----ACTATCTTCA----A-------TTCTAATCACTCTAC---TGTT-CTCCTA-----ACA-CC-ACATTGGACTAA-TCTATTATGTAATAGAAGCAATAATGTTAATATAAGT
246
+ i rheMac2.chr5 C 0 C 0
247
+ s bosTau2.chrM 1944 161 + 16338 ------AAT----------TTAACAC--------------TACCAT-------AGTAGGCCTAAAAGCA-GCCATCAAT-TAAGAAAGCGTTAAAGCT---CAACAACA---------AAAATTAAAT--AGA-------TTCCAACAACAAATG--ATTAA-CTCCTA-----GCC-CCAATACTGGACTAA-TCTATTATAGAATAGAAGCAATAATGTTAATATGAGT
248
+ i bosTau2.chrM C 0 C 0
249
+ s canFam2.chrM 1575 161 + 16727 ------ATA----------CTAATAT--------------CACCAT-------AGTTGGCTTAAAAGCA-GCCACCAAT-TGAGAAAGCGTTCCAGCT---CAACAAAC---------AATA-TAACT--TAA-------TCCCAACCATACTAC--ATCAA-CTCCTAATTATACC-CC----CTGGGTCAT-TCTATTTAAGTATAGAAGCAATAATGCTAGTATGAGT
250
+ i canFam2.chrM C 0 C 0
251
+ s dasNov1.scaffold_23239 5398 161 - 16977 --GCCGTAT----------AAAACAC--------------TTACAT-------AGTTGGCCTAAAAGCA-GCCATCAAT-AAAGAAAGCGTTAAAGCT---CAACAACA---------AAACAATGAC--AGA-------TACCAAAAAC-CACT--GCCAC-CTCCCA-----ACC-TA-ATACTGGGCCAA-TCTATA--TAAATAGAAGAGATAATGTTAGTATAAGT
252
+ i dasNov1.scaffold_23239 C 0 C 0
253
+ s loxAfr1.scaffold_36650 4588 164 + 16266 ---------ATTCA-----CCATTAA--------------TTTCAT-------AGTTGGCTTAGAAGCA-GCCATCAAT-TAAGAAAGCGTTAAAGCT---CAACAACC---A-----ACCAAACTAAAAAGA-------TTCCAAA-ATTAATT-AATGAT-CTCCTA-----AACATA-ATACTGGACTAA-TCTAT--ATAAATAGAAGAAATAATGTTAGTATAAGT
254
+ i loxAfr1.scaffold_36650 C 0 C 0
255
+ s echTel1.scaffold_181343 842 159 + 18297 ---------ACAC------CAAATAA--------------TTTCAT-------AGTTGGCCTAAAAGCA-GCCACCAAT-TAAGACAGCGTTAAAGCT---CAACAATT---T-----ATTTCTCT----AGA-------TTCC----ATTAATTCAATTCTACTCCTA-----AAT-TT-ATATTGGGCAAA-TCTATTCTTATATAGAAGCTAATCTGTTAACATAAGT
256
+ i echTel1.scaffold_181343 C 0 C 0
257
+ s monDom4.chrUn 117153010 162 + 174229318 -------------TGACTTATTTTAA--------------CCCCAT-------CGTAGGCCTAAGAGCA-GCCACCAAT-TAAGAAAGCGTTAAAGCT---CAAACATA--GA-----ATTTTATTCA--ATA-------CCCTAAAACTATCAA-----AA-CCCCTA-----TAA-CA-ATATTGGATGAT-TCTATTAAACTATAGAAGACATAATGCTAAAATCAGT
258
+ i monDom4.chrUn C 0 C 0
259
+ s galGal2.chrM 2870 152 + 16775 -------------TAATCACCCCTCC--------------CCGCAC-------TGTGGGCCTTCAAGCA-GCCACCAACAAAAGAGTGCGTCAAAGCT---C----------------CCTCATTAAA--AAA-------TCTAAAACCCTATTT-----GA-CTCCCT-----CAA-CC-AAAGCAGGTTAA-CCTATGA--CAATAGAAGAATCAATGCTAAAATGAGT
260
+ i galGal2.chrM C 0 C 0
261
+ s xenTro2.scaffold_18215 736 160 + 3330 --------------------------TCGACAGGAAAATGAACCA---------GTGGGCCTAAAAGCA-GCCACCTGT-TAAGAAAGCGTCAAAGCT---CCCTCATA---------TACCTTCCGC--CAA-------TACCGACATCTCCTC----CGA-ACCCTT-----TTT-CC-GTACTGAGCTGT-TCAATTCTAATATTGAAGCACCTATGCTAGAACTAGT
262
+ i xenTro2.scaffold_18215 I 10 M 106
263
+ s tetNig1.chrUn_random 103511381 162 + 171761319 -------------------TAACAAA--------------GGCCATGTGTTTAGGTGGGCCTAAAAGCA-GCCACCC-T-ATTGAAAGCGTTAAAGCT---CAAACACA---------CCCCCGCCAC--TAA-------TACCGATAAATACAT---CCTA-ACCCCT-----GAC-CC-TTATCGGGCCTT-TCTATGCATACATAGAAGAGACTATGCTAATATGAGT
264
+ i tetNig1.chrUn_random C 0 C 0
265
+ s danRer4.chrM 2592 163 + 16596 ------------------TTTACAAA--------------ACACGT-TGTCGTAGTGGGCCTGGAAGCA-GCCACCTAA-AAAGAAAGCGTTAAAGCT---CAGGTAAG---------AAGAAATTCA--TAA-------TTCTGACAATAATAT---CTTA-CTTCCC-----TAA-AA-ATACCAGACTAA-TCCATACAAATATGGAAGAAATTATGCTAAAATGAGT
266
+ i danRer4.chrM C 0 C 0
267
+
268
+ a score=-81423.000000
269
+ s mm8.chrM 1744 113 + 16299 AACAAGAA----TTCCAATTCTC---------------CA--GGCATACGCG-TATAACA----A---CTCGGATA-ACC--ATTGTTAGTTAATCAGACT------------ATAGGC-----A-------ATAATCACA-CTATA-AATAATCCACCTATAACTT-CT-CT---
270
+ s galGal2.chrM 3022 103 + 16775 AATCTGGA-----ACCTATCCTC---------------CTACGGCGTAAACT-TACATTA----A--------TAC-ATT--ATTAACAGAAC-TCAACTT------------ATACCC-----C--------CACACTAA-CAAGC-AAT-ACGTAT---TCCTCA-AT-CT---
271
+ i galGal2.chrM C 0 C 0
272
+ s monDom4.chrUn 117153172 110 + 174229318 AATAAGAA------CTCATTCTC---------------CT--TGCATAAGCC-TAAGTTA----GCCAACGGATTA-CCC--ACTAACACCTA-ACAAATAC----------AATATCT-----T--------TAATT-AA-CAACC-AGTGAATTAC---CCCAAT-AA-TT---
273
+ i monDom4.chrUn C 0 C 0
274
+ s echTel1.scaffold_181343 1001 107 + 18297 AACAAGAGA---ATAAATCTCTC---------------CC--CGCACAAGTA-TATATCA----G---AACGAATA-CTC--GCTGATAATTA-ACAACCT-----------AGTAATT----------------ATACAA-ACTCT-AGACTATTAT---ATTTAC-AC-TT---
275
+ i echTel1.scaffold_181343 C 0 C 0
276
+ s loxAfr1.scaffold_36650 4752 106 + 16266 AATAAGAA------GTATTTCTC---------------CC--TGCATAAGCT-TATATCA----G---GTCGGATG-CCC--GCTGATAGTTA-ACAACCG-----------AATAATT-----A---------GATACAA-AAATA-GAACCTTTAT---TATACC-AA-TT---
277
+ i loxAfr1.scaffold_36650 C 0 C 0
278
+ s dasNov1.scaffold_23239 5559 109 - 16977 AACAAGAA------TATTTTCTC---------------CG--TGCATAAGTG-TATATCA----G---ACCGGATAGACC--ACTGATAGTTA-ACA---------------AATAGGC-----ACCAAACTACCACCAAA-CAATA-ACAATGCCAT---ACACCT-----T---
279
+ i dasNov1.scaffold_23239 C 0 C 0
280
+ s canFam2.chrM 1736 110 + 16727 AACAAGAA-----CCATTTTCTC---------------CC--CGCATAAGCT-TATATCA----G-GAACGGATAG-ACC--ACTGATAGTTA-ACAATCT-----------GATAATA-----T--------CAACCCAA-AAATG-AAATACTTAT---CCACCC-CA-TT---
281
+ i canFam2.chrM C 0 C 0
282
+ s bosTau2.chrM 2105 109 + 16338 AACAAGAA-----AAATTTTCTC---------------CT--TGCATAAGTC-TAAGTCA----G-TGCCTGATAA-TAC--TCTGACCACTA-ACAGTC------------AATAAAA-----A--------TAATCCAA-CAATA-AACAATTTAT---TGATTA-TA-CT---
283
+ i bosTau2.chrM C 0 C 0
284
+ s rheMac2.chr5 34437418 121 - 182086969 AACATGAA------GATATTCTCTATTACATAAGCTTACA-CTGCATAAGCC-TACATCA----G---AATAACCC------ACTAACAGTTA-ACAGCCT-----------AATATTA-----A--------TAAACGATATAATA-AGCACCCTAT---TATTTA-CA-CT---
285
+ i rheMac2.chr5 C 0 C 0
286
+ s panTro2.chrM 1730 109 + 16554 AACATGAA------AACATTCTC---------------CT-CCGCATAAGCC-TACATCA----G---ACCAAAAT-ATTAAACTGACAATTA-ACAGCCT-----------AATATCT-----A--------CAATCAAC-CAACA-AGC-CATTAT---TACCCC-CG-CT---
287
+ i panTro2.chrM C 0 C 0
288
+ s hg18.chrM 2313 109 + 16571 AACATGAA------AACATTCTC---------------CT-CCGCATAAGCC-TGCGTCA----G---ATCAAAAC-ACTGAACTGACAATTA-ACAGCCC-----------AATATCT-----A--------CAATCAAC-CAACA-AGT-CATTAT---TACCCT-CA-CT---
289
+ i hg18.chrM C 0 C 0
290
+ s oryCun1.scaffold_116167 4137 110 + 15695 AACAAGAA-----TACTATTCTC---------------CT--TGCACAAGCT-TATATCA----G---ATCGGATG-CCC--ACTGATAGTTA-ACAGCCCT----------AATAGAA-----A--------TAATCCAC-AAATT-AATAATCTAT---TAACTTTCA-CT---
291
+ i oryCun1.scaffold_116167 C 0 C 0
292
+ s rn4.chrM 1738 106 + 16300 AACAAGAA------CCAATCCAC---------------CA--AGCACAAGTGCTAAGACA----A---C-CGGATA-ACC--ATTGTTAATTA-TTGAATC------------ATAGGC-----A--------TAACCCAA-CAATAGAATTACCTATCCCTAACTC---------
293
+ i rn4.chrM C 0 C 0
294
+ s tetNig1.chrUn_random 103511543 130 + 171761319 AATAAG--GGGCCAGACCCCCTC---------------CA--AGCACAAGTG-TACATCG----G---AACGAACT-CGC--ACCGAAGACTA-ACGAACCCAACCAAAGAGGGCAATGAATATC--------AAACCAAA-CAACA-AGAAAAACAT---TCACAA-CC-CCACC
295
+ i tetNig1.chrUn_random C 0 C 0
296
+ s danRer4.chrM 2755 127 + 16596 AACAAGAAGAACCTGTACTTCTC---------------CA--AGCACAAGTG-TAAGCCAAGTTG---GACAAAC----C--ATTGGCAATTA-ACGAGCCCAAACAAAGAGGGCAATG-----T--------GAGTTAAA-AACTG-AGAAAA--AT---CCACAA-CAGACATC
297
+ i danRer4.chrM C 0 C 0
298
+ e xenTro2.scaffold_18215 896 106 + 3330 M
299
+
300
+ a score=2385506.000000
301
+ s mm8.chrM 1857 323 + 16299 GTTAACCCAACACCGGAATGC---C-T----AAAGGAAAGATCCAAAAAGATAAAAGGAACTCGGCAAA--CAAGAACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACAAGT--ATTAGAGGCACTGCCTGCCCAGTGAC-TA---A-A-GTTTaacggccgcggtatcctgaccgtgcaaaggtagcataatcacttgttccttaattagggactagcatgaacggctaaacgagggtccaactgtctcttatctttaatcagtgaaattgacctttcagtgaagaggctgaaatataataataagacgagaagaccctatggagcttaaATT
302
+ s rn4.chrM 1844 320 + 16300 GTTAGCCCAACACAGGCGTGC---T-T----TAAGGAAAGTTTAAAAAAGT--AAAGGAACTCGGCAAA--CACGAACCCCGC-CTGTTTACCAAAAACATCTCCTCTAGC---ATAACAAGT--ATTAGTGGCATCGCCTGCCCAGTGAC-TA---A-A-GTTCCACGGCCGCGGTATCCCGACCGTGCAaaggtaggataatcacttgttccttaattagggactagaatgaatggctaaacgagggtccaaccgtctcttacttgcaatcagtgaaattgaccttccagtgaaggggcggactcataataa-aagacgagaagaccctatggagcttTAATT
303
+ i rn4.chrM C 0 C 0
304
+ s oryCun1.scaffold_116167 4247 324 + 15695 GTTAACCCAACACAGGAGTGC---TAT----ATAGGAAAGATTAAAAGAAGAAAAAGGAACTCGGCAAA--CCCTAACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACTAGT--ATTAGAGGCACTGCCTGCCCAGTGAC-GT---A-C-GTTCAACGGCCGCGGTATCCTGACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTGGGGACTAGCATGAATGGCAACACGAGGGTTAAACTGTCTCTTTCTTCCAATCAGTGAAATTGACCTCCCCGTGAAGAGGCGGGGATAAAATAATAAGACGAGAAGACCCTATGGAGCTTTAATT
305
+ i oryCun1.scaffold_116167 C 0 C 0
306
+ s hg18.chrM 2422 323 + 16571 GTCAACCCAACACAGGCATGC---T-CA---TAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAA--C-CTTACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATCACCAGT--ATTAGAGGCACCGCCTGCCCAGTGAC-AC---A-T-GTTTAACGGCCGCGGTACCCTAACCGTGCAaaggtagcataatcacttgttccttaaatagggacctgtatgaatggctccacgagggttcagctgtctcttacttttaaccagtgaaattgacctgcccgtgaagaggcgggcatgacacagcaagacgagaagaccctatggagctttaatt
307
+ i hg18.chrM C 0 C 0
308
+ s panTro2.chrM 1839 323 + 16554 GTTAACCCAACACAGGCATGC---C-CA---CAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAA--T-CTTACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACCAGT--ATTAGAGGCACCGCCTGCCCGGTGAC-AT---A-T-GTTTAACGGCCGCGGTACCCTAACCGTGCAaaggtagcataatcacttgttccttaaatagggacttgtatgaatggctccacgagggtttagctgtctcttactttcaaccagtgaaattgacctacccgtgaagaggcgggcataacataacaagacgagaagaccctatggagcttTAATT
309
+ i panTro2.chrM C 0 C 0
310
+ s rheMac2.chr5 34437539 315 - 182086969 GTTAACCCAACAAAGGCATGC---T-C----TAAGGAAAGTTTACAAAAAGTGAAAGGAACTCAGCAAA--T-CTTACCCTGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACCAGT--ATTAGAGGCACTGCCTGCCCAGTGAC-GT---A-T-GTTCAACAGCTGCCATATCCTGACCATGCAAAGGTAGCATAATCACTTGTTCCCTAAGTAGGCACTTGTATGAATTGCTACACGAGGGTTCATCAGTCTCTTACTTT-------TGAAATTGACCTATCCGTGAAGAGATGGATATAAACAAATAAGATGAGAAGACCCTATGGAGCTTTAATT
311
+ i rheMac2.chr5 C 0 I 384
312
+ s bosTau2.chrM 2214 324 + 16338 GTTAACCCAACACAGGAGTGC---A-TC---TAAGGAAAGATTAAAAGAAGTAAAAGGAACTCGGCAAA--CACAAACCCCGC-CTGTTTACCAAAAACATCACCTCCAGC---ATTCCCAGT--ATTGGAGGCATTGCCTGCCCAGTGAC-AA---C-T-GTTTAACGGCCGCGGTATCCTGACCGTGCAAAGGTAGCATAATCATTTGTTCTCTAAATAAGGACTTGTATGAATGGCCGCACGAGGGTTTTACTGTCTCTTACTTCCAATCAGTGAAATTGACCTTCCCGTGAAGAGGCGGGAATGCACAAATAAGACGAGAAGACCCTATGGAGCTTTACCT
313
+ i bosTau2.chrM C 0 C 0
314
+ s canFam2.chrM 1846 324 + 16727 GTTAACCCAACACAGGTATGC---A-TT---CAAGGAAAGATTAAAAGGAGTAAAAGGAACTCGGCAAA--CACAAACCCCGC-CTGTTTACCAAAAACATCACCTCCAGC---ATTTCTAGT--ATTGGAGGCACTGCCTGCCCGGTGAC-AC---T-T-GTTTAACGGCCGCGGTATCCTGACCGTGCAAAGGTAGCATAATCATTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTAACTGTCTCTTACTCCCAATCAGTGAAATTGACCTTCCCGTGAAGAGGCGGGAATACCACAATAAGACGAGAAGACCCTATGGAGCTTTAATT
315
+ i canFam2.chrM C 0 C 0
316
+ s dasNov1.scaffold_23239 5668 327 - 16977 GTTAATCCAACACAGGCATGC---A-TAACTAACGGAAAGATTTAAAGGAATAGAAGGAACTCGGCAAA--CACGAATCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACAATT--ATTAGAGGCACCGCCTGCCCAGTGAC-AC---A-C-GTTTAACGGCCGCGGTACCCTGACCGTGCAAAGGTAGCATAATCACTTGTTCTCTAATTAAGGACCCGTATGAATGGCTAAACGAGGTTTCTACTGTCTCCTATTCCCTATCAGTAAAATTGACCTTCCCGTGAAGAGGCGGGAATAATCATATAAGACGAGAAGACCCTGTGGAGCTTAAATT
317
+ i dasNov1.scaffold_23239 C 0 C 0
318
+ s loxAfr1.scaffold_36650 4858 324 + 16266 GTTAACCCAACACAGGCATGC---T-T----AAGGGAAAGATTAAAAGAAGGAAAAGGAACTCGGCAAA--CACAAACCCCGC-CTGTTTACCAAAAACATCACCTCGAGC---ATTACTAGT--ATTCGAGGCACTGCCTGCCCAGTGAC-CA---AGC-GTTAAACGGCCGCGGTACTCTGACCGTGCAAAGGTAGCATAATCATTTGTTCCTTAATTAGGGACTTGTATGAACGGCCACACGAGGGTTTAACTGTCTCTTTCCTCTAATCAATGAAATTGACCTTCTCGTGAAGAGGCGAGAATAAACATATAAGACGAGAAGACCCTATGGAGCTTAAATT
319
+ i loxAfr1.scaffold_36650 C 0 C 0
320
+ s echTel1.scaffold_181343 1108 326 + 18297 GTTAACCCAACACAGGAGTGCACTC-T----AAAGGAAAGATAAAAAGAAGTAAAAGGAACTCGGCAAA--CTAAAATCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACTAGT--ATTGGAGGCACTGCCTGCCCAGTGAC-CC---A-T-GTTTAACGGCCGCGGTACTCTGACCGTGCAAAGGTAGCATAATCATTTGTTCTCTAAATAAGGACTTGTATGAATGGCAACACGAGGATTTAACTGTCTCTTACTTCTTATCAGTGAAATTGACCTCCCCGTGAAGAGGCGGGGATTAGAACATAAGACGAGAAGACCCTATGGAGCTTAAATT
321
+ i echTel1.scaffold_181343 C 0 C 0
322
+ s monDom4.chrUn 117153282 327 + 174229318 GTTAACCCAACACAGGCATGC---A-CTACTAAAGGACAGATTAAAAAGAATAAAAGGAACTCGGCAAA--CCAAAACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTTCAAGT--ATTAGAGGCACTGCCTGCCCAGTGAA-TT---A-A-TTTTaacggccgcggtatcctgaccgtgcaaaggtagcataatcacttgtctcctaaatagagacttgtatgaatggcaaaacgagggtttaactgtctctttttctcaatcaatgaaattgacctacccgtgcagaggcgggtataactttataagacgagaagaccctgtggagcttaaAAT
323
+ i monDom4.chrUn C 0 I 9
324
+ s galGal2.chrM 3125 327 + 16775 GTTAAGCCAACCCAGGAGCGC---C------CACAGGATGATTAAAACCTACAGAAGGAACTCGGCAAA--CCAAAGACCCGA-CTGTTTCCCAAAAACATAGCCTTCAGCT-AACAACAAGT--ATTGAAGGTGATGCCTGCCCAGTGAC-CCCCAA-A-GTTCAACGGCCGCGGTATCCTAACCGTGCGAAGGTAGCGCAATCAATTGTCCCGTAAATTGAGACTTGTATGAATGGCTAAACGAGGTCTTAACTGTCTCCTGTAGGTAATCTATGAAATTAGTATTCCCGTGCAAAAACGAGAATGTGAACATAAGACGAGAAGACCCTGTGGAACTTTAAAA
325
+ i galGal2.chrM C 0 C 0
326
+ s xenTro2.scaffold_18215 1002 327 + 3330 GTTAACCTAACACAAGAGCAT---T------TAAAGAAAGATTAAAAGATGCAGAAGGAACTCGGCAAA--AGTGAACCCCGCNCTGTTTACCAAAAACATCGCCTCTTGCCAAACAACACGT--ATAAGAGGTCCAGCCTGCCCAGTGACTAT---A-T-GTTCAACGGCCGCGGTATTCTGACCGTGCAAAGGTAGCGTAATCACTTGTCTTTTAAATAAAGACTGGTATGAATGGCACCACGAAGGTTCAACTGTCTCCTGCATCCAATCCATTAAACTGACCTCCCCGTGCAGAGGCGGGGATATTCCCATAAGACGAGAAGACCCTATGGAGCTTTAAAC
327
+ i xenTro2.scaffold_18215 M 106 C 0
328
+ s tetNig1.chrUn_random 103511673 329 + 171761319 GTTAACCCTACACTGGCGTGC---C-TA---ATTGGAAAGACTTAAAGAAAAAGAAGGAACTCGGCAAACCCATAAGCCTCGC-CTGTTTACCAAAAACATCGCCTCTTGC---AAAAACAATGAATAAGAGGTCCCGCCTGCCCTGTGAC-TA---T-ACGTTTAACGGCCGCGGTATTTTGACCGTGCAAAGGTAGCGCAATCACTTGTCCTTTAAATGGGGACCTGTATGAATGGCACGACGAGGGCTTAACTGTCTCCTTTTTCAAGTCAATGAAATTGATCTTTCCGTGCAGAAGCGGGAATAAAAACATAAGACGAGAAGACCCTATGGAGCTTTAGAC
329
+ i tetNig1.chrUn_random C 0 C 0
330
+ s danRer4.chrM 2882 324 + 16596 GTTACCCCCACACTGGAGTGC---A-TA---TAAGGAAAGACTAAAAGAAAGGGAAGGAACTCGGCAAA--CACAAGCCTCGC-CTGTTTACCAAAAACATCGCCTCCTGA---CATCCCAAT--ATAGGAGGTCCAGCCTGCCCAGTGAC-AA---T-A-GTTTAACGGCCGCGGTATTTTGACCGTGCAAAGGTAGCGCAATCACTCGTCCTTTAAATAGGGACCTGTATGAATGGCCAAACGAGGGCTTAACTGTCTCCCCCATCAAGTCAGTGAAATTGATCTATCCGTGCAGAAGCGGATATAATAATACAAGACGAGAAGACCCTTTGGAGCTTAAGGT
331
+ i danRer4.chrM C 0 C 0
332
+
333
+ a score=-149774.000000
334
+ s mm8.chrM 2180 39 + 16299 ATATAACTT-A--TCTATTTAATTTATTAAACCT--AAT------GGCCC
335
+ s rn4.chrM 2164 37 + 16300 TACTAATTT-----CAATTTATATAAAAAAACCT--AAT------GGGCG
336
+ i rn4.chrM C 0 C 0
337
+ s oryCun1.scaffold_116167 4571 41 + 15695 ATTTAACCC-A--ACACTTCCTTTATTCTACTCTACAAT------GAGCC
338
+ i oryCun1.scaffold_116167 C 0 C 0
339
+ s panTro2.chrM 2162 37 + 16554 CATTAATGCAA--ACAAT---ACTTAACAAACCT--ACA------GGTCC
340
+ i panTro2.chrM C 0 I 2
341
+ s hg18.chrM 2745 37 + 16571 taTTAATGCAA--ACAGT---ACCTAACAAACCC--ACA------GGTCC
342
+ i hg18.chrM C 0 I 2
343
+ s bosTau2.chrM 2538 17 + 16338 -------------------------AACCAACCC--AAA------GAGAA
344
+ i bosTau2.chrM C 0 I 21
345
+ s canFam2.chrM 2170 23 + 16727 -------------------------AACTAACCC--AAACTTATGGATAC
346
+ i canFam2.chrM C 0 I 18
347
+ s dasNov1.scaffold_23239 5995 38 - 16977 AACTAGATC-A--GCAATATCAACATATCCATCA--ACA------GATA-
348
+ i dasNov1.scaffold_23239 C 0 I 1
349
+ s loxAfr1.scaffold_36650 5182 37 + 16266 AACTAATTTAA--TTGCT---AGCCTATAAATCT--ATA------AGATA
350
+ i loxAfr1.scaffold_36650 C 0 I 1
351
+ s echTel1.scaffold_181343 1434 35 + 18297 AA-TAACCCAA--TTGTT----TCTCACAAAACC--AAA------AGGCA
352
+ i echTel1.scaffold_181343 C 0 I 1
353
+ s monDom4.chrUn 117153618 28 + 174229318 AATTAATTTAT--ACTAT-----------ACCCT--AAG------GGAT-
354
+ i monDom4.chrUn I 9 C 0
355
+ s galGal2.chrM 3452 29 + 16775 -------------TCACGACCACCTTACAACCTT--ACA------CAGCC
356
+ i galGal2.chrM C 0 I 11
357
+ s xenTro2.scaffold_18215 1329 36 + 3330 ---TTACGGCA--ACTGCTAAACAATCCAACCCC--ACA------CGGG-
358
+ i xenTro2.scaffold_18215 C 0 I 4
359
+ s tetNig1.chrUn_random 103512002 26 + 171761319 -----ATAAAA--CAGATCACGTCAAACACCCT-----------------
360
+ i tetNig1.chrUn_random C 0 C 0
361
+ s danRer4.chrM 3206 28 + 16596 -----ACAAGATTTAATTTACATCAAGCAAACC-----------------
362
+ i danRer4.chrM C 0 C 0
363
+ e rheMac2.chr5 34437854 384 - 182086969 I
364
+
365
+ a score=88545.000000
366
+ s mm8.chrM 2219 80 + 16299 ------------AAAA-------------ACTATAG---TATAAGT---T-TG-------AAATTTCGGTTGGGGTGACCTCGGAGAATAAAAAATCCTCC-----GAAT-----GA----------------TTATAACCTAGA
367
+ s rn4.chrM 2201 83 + 16300 ------------AAAACA-----------ACAAAAT---TATGAAC---TACC-------AAATTTCGGTTGGGGTGACCTCGGAGAATAAAAAATCCTCC-----GAAT-----GA----------------TTATAACCGAGT
368
+ i rn4.chrM C 0 C 0
369
+ s oryCun1.scaffold_116167 4612 83 + 15695 ------------TAACCA-----------AGGAAAT--CCCTGGGT---T-AA-------AAATTTTGGTTGGGGTGACCTCGGAGTATAAATCAACCTCC-----GAAT-----GA----------------TTTTAGCCTAGA
370
+ i oryCun1.scaffold_116167 C 0 C 0
371
+ s hg18.chrM 2784 79 + 16571 --------------AACT-----------ACCAAA----CCTGCAT---T-AA-------AAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCC-----GAGC-----AG----------------TACATGCTAAGA
372
+ i hg18.chrM I 2 C 0
373
+ s panTro2.chrM 2201 79 + 16554 --------------AACT-----------ATTAAA----CCTGCAT---T-AA-------AAATTTCGGTTGGGGCGACCTCGGAGCACAACCCAACCTCC-----GAGC-----AA----------------TACATGCTAAGA
374
+ i panTro2.chrM I 2 C 0
375
+ s rheMac2.chr5 34438238 81 - 182086969 --------------aaaa-----------aatata----tatatatatat-at-------atatGTTGGTT-GGGTGACCCCGGAGCATAATTCAACCTCC-----GAAC-----GA----------------CCTAAACTAAGA
376
+ i rheMac2.chr5 I 384 C 0
377
+ s bosTau2.chrM 2576 83 + 16338 --------------AACA-----------ACAATCT--CCATGAGT---T-GG-------TAGTTTCGGTTGGGGTGACCTCGGAGAATAAAAAATCCTCC-----GAGC-----GAT-----------T---TTAAAGACTAGA
378
+ i bosTau2.chrM I 21 C 0
379
+ s canFam2.chrM 2211 85 + 16727 --------------AACATAA-------CACCATTA--TTATGAGT---T-AG-------CAATTTAGGTTGGGGTGACCTCGGAATATAAAAAAACTCCC-----GAGT-----GA----------------TTAAAATTTAGA
380
+ i canFam2.chrM I 18 C 0
381
+ s dasNov1.scaffold_23239 6034 80 - 16977 ------------AAAACA-----------GAATGA----TATGAAC---T-AT-------TAATTTTGGTTGGGGTGACCTCGGAGCACAGCAAAACCTCC-----GAAT-----GA-----------------CAGCGCCAAGA
382
+ i dasNov1.scaffold_23239 I 1 C 0
383
+ s loxAfr1.scaffold_36650 5220 84 + 16266 --------------AACT-----------A-AACAG---CATGATAAATT-AA-------CAATTTTGGTTGGGGTGACCTCGGAGAAGAAAAAATCCTCC-----GAAC-----GAT-----------A---TTATAATTTAGA
384
+ i loxAfr1.scaffold_36650 I 1 I 1
385
+ s echTel1.scaffold_181343 1470 81 + 18297 --------------AACT-----------ATAACTA---TATGGAG-----AA-------AGATTTCGGTTGGGGTGACCTCGGAGCATAATTAAACCTCC-----GAAT-----GAT-----------A---TATACATCTAGA
386
+ i echTel1.scaffold_181343 I 1 M 388
387
+ s monDom4.chrUn 117153646 83 + 174229318 ------------------TAATCT----TACAAAAC--TTTTTAAG---C-TG-------AATTTTTGGTTGGGGTGACCTCGGAGCACAAGCAACCCTCC-----GAAT-----GA-----------------CATAACTAAGA
388
+ i monDom4.chrUn C 0 C 0
389
+ s galGal2.chrM 3492 96 + 16775 ---------------------ACCCACACATAAACC---CCTGGTC---G-AC-------ATTTTTCGGTTGGGGCGACCTTGGAGAAAAAAAAATCCTCC-----AAACCCACAGACCAC------AAC---TCTTCACTAAGA
390
+ i galGal2.chrM I 11 C 0
391
+ s xenTro2.scaffold_18215 1369 100 + 3330 ------------CAGACA-----------ATTAAGCAACAATGACC---T-AA-------AGTTTTCGGTTGGGGCGACCACGGAGAAAAAAAAATCCTCCTTGATGTAC-----GGGGCCT---TACCC---TCTTAACCAAGA
392
+ i xenTro2.scaffold_18215 I 4 C 0
393
+ s tetNig1.chrUn_random 103512028 111 + 171761319 TAGATAAAAGAACAAACT-----------------A---AGTGAGC---C-CTGTTCAAATGTCTTTGGTTGGGGCGACCGCGGGGTAACAAAAAACCCCC-----ATGT-----GGAATAAAAACACCCTTTTTAAAACCAAGA
394
+ i tetNig1.chrUn_random C 0 C 0
395
+ s danRer4.chrM 3234 107 + 16596 AATAAAAGTGATTAAACT-----------AGTAAAA---GATAAAC---C-TC-------TACCTTCGGTTGGGGCGACCACGGAGTAAAAAACAACCTCC-----AAGC-----GGAACGGGCACAGCC---CTAAAACCAAGA
396
+ i danRer4.chrM C 0 C 0
397
+
398
+ a score=173589.000000
399
+ s mm8.chrM 2299 79 + 16299 CT---------TACAAGTCA---AAGTAAAATCAACATATCT------TATT------GACCCAGATA---TATTTTGATCAACGGACCAAGTTACCCTAGGGATA
400
+ s rn4.chrM 2284 84 + 16300 CGGTAACCGTGTCCGACCCAGTCAAGTAATACTAA--TATCT------TATT------GACCCAATTA---T----TGATCAACGGACCAAGTTACCCTAGGG-TA
401
+ i rn4.chrM C 0 C 0
402
+ s oryCun1.scaffold_116167 4695 76 + 15695 CC--------CAACAAGTCA---AAGCAATTATAA--TCATA------AATT------GACCCAAATA---A--TTTGATCAACGGAACAAGTTACCCTAGGGATA
403
+ i oryCun1.scaffold_116167 C 0 n 0
404
+ s hg18.chrM 2863 76 + 16571 CT--------TCACCAGTCA---AAGCGA-ACTACTATACTC------AATT------GATCCAA-TA---A--CTTGACCAACGGAACAAGTTACCCTAGGGATA
405
+ i hg18.chrM C 0 C 0
406
+ s panTro2.chrM 2280 76 + 16554 CC--------TCACCAGTCA---AAGCGA-ATTACTACATCC------AATT------GATCCAA-TG---A--CTTGACCAACGGAACAAGTTACCCTAGGGATA
407
+ i panTro2.chrM C 0 C 0
408
+ s rheMac2.chr5 34438319 74 - 182086969 CC--------ACACCAGTCT---ACGCGA-GTTAACACAC---------ATT------GGCCCAATTA---A--TTTGATCAATGGAGTAAGTTATCCTATGGATA
409
+ i rheMac2.chr5 C 0 C 0
410
+ s bosTau2.chrM 2659 72 + 16338 CC---------CACAAGTCA---AATCAC----TCTATCGCT------CATT------GATCCAA-AA---A--CTTGATCAACGGAACAAGTTACCCTAGGGATA
411
+ i bosTau2.chrM C 0 C 0
412
+ s canFam2.chrM 2296 74 + 16727 CC---------CACAAGTCA---AAATAC----AACATCACT------TATT------GATCCAA-TA---ATTTTTGATCAACGGAACAAGTTACCCTAGGGATA
413
+ i canFam2.chrM C 0 C 0
414
+ s dasNov1.scaffold_23239 6114 73 - 16977 CC---------AACCGGTCA---AAGCCC--ATAACGAAACC------AATT------GATCCAA--A---A--ATTGACCAACGGAACCAGTTACCCCAGGGATA
415
+ i dasNov1.scaffold_23239 C 0 C 0
416
+ s loxAfr1.scaffold_36650 5305 72 + 16266 ---------TCTACAAGTCA---AAATTT-ACTAA--TCGCT------TATT------GACCCAA--T---A--CTTGATCAACGGAACAAGTTACCCTAGGGATA
417
+ i loxAfr1.scaffold_36650 I 1 C 0
418
+ s echTel1.scaffold_49882 2559 71 - 7170 ---------CCTACAAGTCG---CAATTA-A--AA--TCACT------TATT------GACCCAA-TT---A--CTTGAGCAACGGACCAAGTTACCCTAGGGATA
419
+ i echTel1.scaffold_49882 I 1561 C 0
420
+ s monDom4.chrUn 117153729 75 + 174229318 ---------CTAACACATCT---AAGTGCAACCTAAGCCAGT------AATT------GACCCAA--A---A--CTTGATCAACGGAACAAGTTACCCCAGGGATA
421
+ i monDom4.chrUn C 0 C 0
422
+ s galGal2.chrM 3588 72 + 16775 ---------CCAACTCCTCA---AAGTACCAACAG--TAACC------A---------GACCCAATAT---A--ATTGAGCAATGGACCAAGCTACCCCAGGGATA
423
+ i galGal2.chrM C 0 C 0
424
+ s xenTro2.scaffold_18215 1469 80 + 3330 ---------ACGACAGTTCT---AAGTAA---CAAAACATTTGACCACTATT------GATCCAGTCC---A--ACTGATCAACGAACCAAGTTACCCTAGGGATA
425
+ i xenTro2.scaffold_18215 C 0 C 0
426
+ s tetNig1.chrUn_random 103512139 79 + 171761319 ---------GCCACCGCTCT---AATGAA---CAGAACATCT------GACCAATCA-GATCCGGCCT---A--GCCGATCAACGAACCGAGTTACCCTAGGGATA
427
+ i tetNig1.chrUn_random C 0 C 0
428
+ s danRer4.chrM 3341 83 + 16596 ---------GAAACATCTCT---AAGCCT---CAGAACACCT------GACCAAAGACGATCCGGCCTATAA--GCCGATCAACGAACCAAGTTACCCTAGGGATA
429
+ i danRer4.chrM C 0 C 0
430
+
431
+ a score=1521193.000000
432
+ s mm8.chrM 2378 161 + 16299 ACAGCGCAATCCTATTTAA-GAGTTCATATCGACAATTAGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCAATGGTGTAGAAGCTATTAATGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
433
+ s rn4.chrM 2368 153 + 16300 ACAGCGCGA-CCTATTTAA-GAGTTCATATCGACAATTAGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCAATGGTGCAGAAGCTATTAATGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTAAGTCCGG-------CAATCCAGGTCGGTT
434
+ i rn4.chrM C 0 C 0
435
+ s oryCun1.scaffold_205008 2 161 - 118789 ACAGCGCAATCCTATTTTA-GAGTCCCTATCGACAATAGCGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCAATGGTGTAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGAAATCCAGGTCGGTT
436
+ i oryCun1.scaffold_205008 n 0 C 0
437
+ s hg18.chrM 2939 160 + 16571 ACAGCGCAATCCTATTCTA-GAGTCCATATCAACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT
438
+ i hg18.chrM C 0 C 0
439
+ s panTro2.chrM 2356 160 + 16554 ACAGCGCAATCCTATTCCA-GAGTCCATATCAACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT
440
+ i panTro2.chrM C 0 C 0
441
+ s rheMac2.chr5 34438393 161 - 182086969 ACAACAAAATCCTATTCTAGGATTCCCTATTGGCAAT-AGGGTTTAC-AACCTCGATGTTGGATCAGGACATCCTAATGGTGTAGCTGCTATTAAGGGTTCATTTATTCAATGATTAA-AGTCCTACCTGATCTGAGTTCAGACCGGAGTAATCCAGGTTGGTT
442
+ i rheMac2.chr5 C 0 C 0
443
+ s bosTau2.chrM 2731 160 + 16338 ACAGCGCAATCCTATTCAA-GAGTCCATATCGACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTGATGGTGCAACCGCTATCAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT
444
+ i bosTau2.chrM C 0 C 0
445
+ s canFam2.chrM 2370 160 + 16727 ACAGCGCAATCCTATTCAA-GAGTCCATATCGACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCAGCTATTAAGGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT
446
+ i canFam2.chrM C 0 C 0
447
+ s dasNov1.scaffold_23239 6187 160 - 16977 ACAGCGCAATCCTATTCCA-GAGCCCATATCAACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACACCCAAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
448
+ i dasNov1.scaffold_23239 C 0 C 0
449
+ s loxAfr1.scaffold_36650 5377 160 + 16266 ACAGCGCAATCCTACTCTA-GAGTCCCTATCGACAGC-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
450
+ i loxAfr1.scaffold_36650 C 0 C 0
451
+ s echTel1.scaffold_49882 2630 161 - 7170 ACAGCGCAATCCTATTTAA-GAGTTCATATCGACGAT-AGGGTTTACTGACCTCGATGTTGGATCAGGACACCCAGATGGTGCAACAGCTATCAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
452
+ i echTel1.scaffold_49882 C 0 I 1469
453
+ s monDom4.chrUn 117153804 161 + 174229318 ACAGCGCAATCCTATTTAA-GAGCCCATATCGACAATTAGGGTTTAC-GACCTCGATGTTGGATCAGGACACCCCAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGAAATCCAGGTCGGTT
454
+ i monDom4.chrUn C 0 C 0
455
+ s galGal2.chrM 3660 161 + 16775 ACAGCGCAATCTCCTCCAA-GAGCCCATATCGACAAG-GAGGTTTAC-GACCTCGATGTTGGATCAGGACAACCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAACAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
456
+ i galGal2.chrM C 0 C 0
457
+ s xenTro2.scaffold_18215 1549 160 + 3330 ACAGCGCAATCCATTTCGA-AAGTTCCTATCGACAAA-TGGGTTTAC-GACCTCGATGTTGGATCAGGGCATCCCAGTGGTGCAGCCGCTACTAAAGGTTCGTTTGTTCAACGATTAA-AGCCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCAGTT
458
+ i xenTro2.scaffold_18215 C 0 C 0
459
+ s tetNig1.chrUn_random 103512218 160 + 171761319 ACAGCGCAATCCTCTTTTA-GAGCCCATATCGACAAG-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCAGTT
460
+ i tetNig1.chrUn_random C 0 C 0
461
+ s danRer4.chrM 3424 161 + 16596 ACAGCGCAATCCTCTCTAA-GAGTCCATATCGACGAG-GGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAATAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCAGTT
462
+ i danRer4.chrM C 0 C 0
463
+
464
+ a score=51271.000000
465
+ s mm8.chrM 2539 136 + 16299 TCTATCTATTTAC--G-ATTTCTCCC-AGT-ACGAAAGGACAAGAGAAATAGAGCC-ACCTTACAAATAAG-CG--CTCTCAACT----TAATTTATGAATAAAATCTAAAT--AAAA---TAT---ATACG---T-ACACCCTCT---AACCTAGAGA----AGGTT-
466
+ s rn4.chrM 2521 132 + 16300 TCTATCTATTTAC--A-ATTTCTCCC-AGTTACGAAAGGACAAGAGAAATGGAG---ACCAACCAATCCTA-GG--CTTCCAACC-----AATTTAG----AAAAACTTAAT--AAAG---TAT---ATATG---T-ACAATAAAT---AACCT-TAGACCC-AAGTT-
467
+ i rn4.chrM C 0 C 0
468
+ s oryCun1.scaffold_205008 163 136 - 118789 TCTATCTATTAAG--T-ATTTCTCCC-AGT-ACGAAAGGACAAGAGAAATAGAGCCTACTGCACCA--CAG-AG--CTCTAAGTC----CAAAAGATGAA-ATAATCTTAAT--CTAG---TAC---ACTTA---C-CCAACATAG---AGCCC-TAGACCA-GAGCT-
469
+ i oryCun1.scaffold_205008 C 0 C 0
470
+ s hg18.chrM 3099 129 + 16571 TCTATCTACTTCA--A-ATTCCTCCC-TGT-ACGAAAGGACAAGAGAAATAAGGCCTACTTCACAA---AG-CG-CCTTCCCCCG----TAAATGAT----ATCATCTCAAC--TTAGTATTAT---ACCCA---C-ACCCAC---------CC-AAGAACA-GGGT--
471
+ i hg18.chrM C 0 I 89
472
+ s panTro2.chrM 2516 117 + 16554 TCTATCTGTTCTA--A-ATTTCTCCC-TGT-ACGAAAGGACAAGAGAAATGAGGCCTACTTCACAA---AG-CG-CCTTCCCCAA----TAAATGAT----ATTATCTCAAT--TTAGCGCCAT---GCCAA---C-ACCCACT-------------------------
473
+ i panTro2.chrM C 0 I 92
474
+ s rheMac2.chr5 34438554 132 - 182086969 TCTATATATTTAA--T-ATTTCTCCT-AGT-ATGAAAGGACAAGAGAAATAGGGCCCACTTCATAA---AG-TGCCCTTGCCGCA----TAAATGAT----GCTATCTCTGT--CTAA---CAA---ACCAT---C-ACACACCCT---A-CCC-AGAAACA-GGGT--
475
+ i rheMac2.chr5 C 0 I 2
476
+ s bosTau2.chrM 2891 130 + 16338 TCTATCTATTACG--T-ATTTCTCCC-AGT-ACGAAAGGACAAGAGAAATAAGGCCAACTTTAAAT-CAAG-CG--CCTTAAGAC-----AACCAATGAT-AACATCTCAA---CTGA---CAA---CACAA---A-ACCCT--------GCCC-TAGAACA-GGGCT-
477
+ i bosTau2.chrM C 0 I 2
478
+ s canFam2.chrM 2530 138 + 16727 TCTATCTATTATA--CAACCTCCCCC-AGT-ACGAAAGGACAAGGGATGTAAGGCCTACCTCACAG--AGG-CG--CCTTAAAAC----TAATAGATGAA-GTCAACTCAAT--CTAA---CCA---GTTTA---T-CTCCTCATA---AGCCC-GAGAAAAGGGGCT-
479
+ i canFam2.chrM C 0 I 2
480
+ s dasNov1.scaffold_23239 6347 137 - 16977 TCTATCTATAACC--A-ATTTCTCCC-AGT-ACGAAAGGACAAGAGAAATAAGGCCAACTTTACAA-GAGG-CG-CCTTAAATCA----AAATAGATGAA-ATAATCTCAAC--CTAA---AAC---AT-TA---C-ATAAACATT---AGTCC-TAAGCCA-GGACC-
481
+ i dasNov1.scaffold_23239 C 0 I 2
482
+ s loxAfr1.scaffold_36650 5537 134 + 16266 TCTATCTATAGTT--T-ATTTATTCC-AGT-ACGAAAGGACAGAAAAAATGAGGCCAATCTTACCA---AGACG--CCTCCAGCT----AAATTTATGAA-TAAATCTCAAT--CTAG-----------ATAAGCT-AAACCACCC---AATCC-AAGAACA-GGATT-
483
+ i loxAfr1.scaffold_36650 C 0 I 1
484
+ s echTel1.scaffold_181343 1939 126 + 18297 TCTATCTATTTTA--T-ATCTCCTCCTAGT-ACGAAGGACCAGAGAGA---TAGCCACTTTCAACC---AG-CG--CCTTAA--C----AAACCAATGAT-ATAATCTTAAT--TTAC-----------CTA---T-ATCCATTTC---TGCTC-TAGATAA-GAGCT-
485
+ i echTel1.scaffold_181343 M 388 I 1
486
+ s monDom4.chrUn 117153965 135 + 174229318 TCTATCTATATAA--TAATTTCTCCT-AGT-ACGAAAGGACAAGAGAATTAAGGCCAACATTACAA--ACA-AG--CCTTACAAC----TAACTAATGAT-CTTATCTCAAT--TAGT---TAA---TGCAA---G-ATTTTATT-----ACTC-TAGAGAA-GAGTT-
487
+ i monDom4.chrUn C 0 C 0
488
+ s galGal2.chrM 3821 142 + 16775 TCTATCTATGGAC----ACTCCTCCT-AGT-ACGAAAGGACCGGAGAAGTGGGGTCAATACCACTG---AG-CA--CACCCCAACCTTCTAAGCAATGAA-TACAACTCAACTGCCAA---GAA---CCCCT---C-CCCCACACCCGAACTCC-TAGAAAA-GGAT--
489
+ i galGal2.chrM C 0 I 3
490
+ s xenTro2.scaffold_18215 1709 136 + 3330 TCTATCTATGCAG--T-ATTTTCTCT-AGT-ACGAAAGGACCGAGAAAATGAGGTCTATGTCACAA--ACA-AG--CCTCCTCCC----TTATCAATGAA-AACAACTTAAT--TGAA---TAA---AGGAC---T-AACAACTTC---AGCCC-AAGATAA-GGGCT-
491
+ i xenTro2.scaffold_18215 C 0 M 690
492
+ s tetNig1.chrUn_random 103512378 139 + 171761319 TCTATCTATGAAG-TG-CCCTTTTCT-AGT-ACGAAAGGACCGAAAAGGAGAGACCCCTGCCAAAA--GCA-CG--TCCCCCTCT----CACCCGTTGTC-TCCAACTAAAA--CAGA---CAA---GAGAG---CACACAACAAC---AGCCA-AAGAACA-TGACAT
493
+ i tetNig1.chrUn_random C 0 C 0
494
+ s danRer4.chrM 3585 141 + 16596 TCTATCTGTAAAGCTA-TTTTTTCCT-AGT-ACGAAAGGATCGGAAAAAGGGGGCCCATACTAAAA--GCA-CG--CCCCACCCT----AAATTTATGAA-TAAAGATAAAA--AAAA---TAAAAGGAGAG---C-TAAAACCTC---TTCCC-GA-AATA-AGGGTT
495
+ i danRer4.chrM C 0 C 0
496
+
497
+ a score=312226.000000
498
+ s mm8.chrM 2675 76 + 16299 A-ttagggtggcagagccaggaaattgcgtaagacttaaaaccttgttcccagaggttcaaatcctctccctaa-ta--G
499
+ s rn4.chrM 2653 76 + 16300 A-ttagggtggcagagccaagtaattgcgtaagacttaaaaccttgttcccagaggttcaaatcctctccctaa-ta--G
500
+ i rn4.chrM C 0 C 0
501
+ s oryCun1.scaffold_205008 299 79 - 118789 Agttaaggtggcagagcccggtaattgcgtaaaacttaaaactttataaccagaggttcaactcctctccttaa-caATA
502
+ i oryCun1.scaffold_205008 C 0 C 0
503
+ s rheMac2.chr5 34438688 76 - 182086969 -gttaagatggaggagcttggtaattgcataaaacttaaaattttataataagaggttcaactcctcttcttaa-ca--A
504
+ i rheMac2.chr5 I 2 I 2
505
+ s bosTau2.chrM 3023 76 + 16338 -gttaaggtggcagagcccggtaattgcataaaacttaaacttttatatccagagattcaaatcctctccttaa-ca--A
506
+ i bosTau2.chrM I 2 I 2
507
+ s canFam2.chrM 2670 75 + 16727 -gttagggt-gcagggcccggtaactgcgtaaaacttaaacctttactatcagaggttcaattcctctccctaa-ca--A
508
+ i canFam2.chrM I 2 I 2
509
+ s dasNov1.scaffold_23239 6486 76 - 16977 -gttaagatggcagagacaggtaattgcataagacttaaacctttattaccagaggttcaaatcctcttcttaa-ca--t
510
+ i dasNov1.scaffold_23239 I 2 I 3
511
+ s loxAfr1.scaffold_36650 5672 76 + 16266 -gttaagatagcaaaaactggtcactgcataaaacttaagcttttactcacggaggttcaactcctcttcttaa-ca--A
512
+ i loxAfr1.scaffold_36650 I 1 C 0
513
+ s echTel1.scaffold_181343 2066 76 + 18297 -Attaagatggcagagcccggtaattgcacaagacttaaacccttgccgtcagaggttcaatccctcttcttaa-ta--A
514
+ i echTel1.scaffold_181343 I 1 C 0
515
+ s monDom4.chrUn 117154100 75 + 174229318 -Attaaggtggcagag-caggtaattgcataaaacttaagcctttactatcagaggttcaacccctctccttaa-ta--T
516
+ i monDom4.chrUn C 0 I 1
517
+ s galGal2.chrM 3966 75 + 16775 -GCTAGCGTGGCAGAGCTCGGCAAATGCAAAAGGCTTAAGCCCTT-TATCCAGAGGTTCAAATCCTCTCCCTAG-CT--A
518
+ i galGal2.chrM I 3 I 30
519
+ s tetNig1.chrUn_random 103512517 75 + 171761319 -gttagggtggcagagcccggtaaatgcaaaagacctaagcccttt-atacagaggttcaactcctctccttaa-cT--A
520
+ i tetNig1.chrUn_random C 0 C 0
521
+ s danRer4.chrM 3726 77 + 16596 -GCTGGGATGGCAGAGCTCGGTAATTGCAAAAGGCCTAAGCCCTTTCACCCAAAGGTTCAAATCCTTTTCCCAGTTT--A
522
+ i danRer4.chrM C 0 C 0
523
+ e xenTro2.scaffold_18215 1845 690 + 3330 M
524
+ e panTro2.chrM 2633 92 + 16554 I
525
+ e hg18.chrM 3228 89 + 16571 I
526
+
527
+ a score=353365.000000
528
+ s mm8.chrM 2751 92 + 16299 ------------------TGTTCTTTATTAATATCCTAACACTCCTCGTCCCCATTCTAATC---GCCATAGCCTTCCTAACATTAGTAGAACGCAAAATCTTAGGGTACATA
529
+ s galGal2.chrM 4071 92 + 16775 ------------------ACCTTCTAATCATAACCTTATCCTATATTCTCCCCATCCTAATC---GCCGTGGCCTTCTTAACACTTGTAGAACGAAAAATCCTAAGCTACATG
530
+ i galGal2.chrM I 30 C 0
531
+ s monDom4.chrUn 117154176 92 + 174229318 ------------------TGTTCCTAATCAATCTACTAATCTATATTATTCCTATTCTACTA---GCAGTAGCTTTTTTAACATTAATCGAACGAAAAGTCCTAGGTTATATA
532
+ i monDom4.chrUn I 1 C 0
533
+ s echTel1.scaffold_181343 2142 92 + 18297 ------------------TGTTTATTATTAATCTCTTATCACTGATTGTTCCTATCCTCCTA---GCAGTAGCTTTCCTTACACTTCTTGAACGAAAAGTACTAGGATATATG
534
+ i echTel1.scaffold_181343 C 0 C 0
535
+ s loxAfr1.scaffold_36650 5748 92 + 16266 ------------------TGTTCTTAATCAATGTCCTAACAGTAACCTTACCTATCCTCCTA---GCAGTAGCCTTCCTTACCTTAGTTGAACGAAAGGCCTTAGGCTATATA
536
+ i loxAfr1.scaffold_36650 C 0 C 0
537
+ s dasNov1.scaffold_23239 6565 92 - 16977 ------------------TGTACTTAATCAATGTTCTATCTCTAATTATCCCAATTCTCCTA---GCAGTAGCCTTCCTAACGTTACTAGAACGAAAAATTCTAGGCTATATA
538
+ i dasNov1.scaffold_23239 I 3 C 0
539
+ s canFam2.chrM 2747 92 + 16727 ------------------TGTTCTTTATCAACATTATCTCTCTTATTATCCCAATCCTTCTT---GCCGTAGCCTTCCTCACCCTCGTTGAACGAAAAGTCTTAGGCTATATA
540
+ i canFam2.chrM I 2 C 0
541
+ s bosTau2.chrM 3101 92 + 16338 ------------------TGTTCATAATTAACATCTTAATACTAATTATTCCCATCCTATTG---GCCGTAGCATTCCTTACGTTAGTGGAACGAAAAGTTCTAGGCTATATA
542
+ i bosTau2.chrM I 2 C 0
543
+ s rheMac2.chr5 34438766 92 - 182086969 ------------------TGCCTTTAATTAACCTTCTCCTACTCATTATCCCCACTCTTATC---GCTATAGCGTTCCTTACACTCATCAAACGAAAAATCTTAGGCTATACA
544
+ i rheMac2.chr5 I 2 C 0
545
+ s hg18.chrM 3317 83 + 16571 ---------------------------CCAACCTCCTACTCCTCATTGTACCCATTCTAATC---GCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATA
546
+ i hg18.chrM I 89 C 0
547
+ s panTro2.chrM 2725 92 + 16554 ------------------CACCCATGACCAACCTCCTACTCCTCATTGTACCCATCCTAATC---GCAATAGCATTCCTAATGCTAACCGAACGAAAAATTCTAGGCTACATA
548
+ i panTro2.chrM I 92 C 0
549
+ s oryCun1.scaffold_205008 378 92 - 118789 ------------------TGTTCCTAATTAATACACT---CCTTTTAATCCTACCTGTACTTTTAGCCATAGCATTCCTCACCTTAGTCGAACGAAAAATCTTAGGGTACATA
550
+ i oryCun1.scaffold_205008 C 0 C 0
551
+ s rn4.chrM 2729 92 + 16300 ------------------TGTACTTTATTAATATCCTAACACTCCTAATCCCAATCTTAATT---GCCATAGGCCTTCTCACCCTAGTAGAACGGAAAATCCTAGGCTACATA
552
+ i rn4.chrM C 0 C 0
553
+ s tetNig1.chrUn_random 103512592 110 + 171761319 TGATTACAACCCTCATCACACACATCCTAAACCCTCTTGCCTTTATTGTCCCCGTCCTACTA---GCCGTCGCTTTTCTGACACTCCTAGAACGAAAAGTTCTAGGATACATA
554
+ i tetNig1.chrUn_random C 0 C 0
555
+ s danRer4.chrM 3803 110 + 16596 TGCTAGACATCTTAACAAGCCACTTAATTAACCCCCTAGCCTACGCCGTACCAGTATTAATT---GCAGTAGCCTTCCTTACCTTAGTTGAACGAAAAGTGTTAGGCTATATA
556
+ i danRer4.chrM C 0 C 0
557
+ e xenTro2.scaffold_18215 1845 690 + 3330 M
558
+
559
+ a score=1741996.000000
560
+ s mm8.chrM 2843 346 + 16299 CAACTACGAAAAGGCCCTAACATTGTTGGTCCATACGGCATTTTACAACCATTTGCAGACGCCATAAAATTATTTATAAAAGAACCAATACGCCCTTTAACAAC-CTCTATATCCTTATTTATTATTGCACCTACCCTATCACTCACACTAGCATTAAGTCTATGAGTTCCCCTACCAAT---ACCACACCCA---TTAATTAATTTAAACCTAGGGATTTTATTTATTTTAGCAACATCTAGCCTATCAGTTTACTCCATTCTATGATCAGGATGAGCCTCAAACTCCAAATACTCACTATTCGGAGCTTTACGAGCCGTAGCCCAAACAATTTCATATGAAGTAACCATAG
561
+ s rn4.chrM 2821 346 + 16300 CAATTACGCAAAGGCCCCAACAACGAAGGCCCATATGGTAAACTACAACCATTTGCAGATGCCATAAAACTATTCATAAAAGAACCCATACGCCCTCTAACCAC-CTCAATATCACTATTTATTATCGCCCCAACCCTCTCCCTTACACTAGCTCTAAGCCTATGAATTCCCTTACCAAT---ACCCCACCCC---CTTATCAACCTCAACCTAGGCATACCATTTATTCTAGCCACATCCAGCCTTTCGGTCTACTCCATTCTATGATCGGGATGAGCCTCAAATTCAAAATACTCCCTATTCGGAGCCCTACGAGCCGTTGCCCAAACCATCTCTTACGAAGTCACAATAG
562
+ i rn4.chrM C 0 C 0
563
+ s oryCun1.scaffold_205008 470 347 - 118789 CAACTACGTAAAGGCCCAAACATTGTAGGACCCTATGGCCTCCTCCAACCAATCGCAGACGCTATTAAGCTATTCACTAAAGAACCCCTACGACCCCTAACATCGCTCTCCGCTACTCTTTATTATCGCCCCAACCCTAGCTCTAACTCTCGCACTATCAATGTGACTTCCTATCCCCAT---ACCTTACCCA---CTAGTCAACCTAAATATAGGCATTCTATTCATCCTAGCAACCTCCAGCTTAGCCGTTTACTCAATCCTATGATCAGGATGAGCATCCAACTCAAAATACGCCCTATTTGGTGCTCTCCGAGCAGTCGCACAAACCATTTCCTACGAAGTCACACTTG
564
+ i oryCun1.scaffold_205008 C 0 C 0
565
+ s panTro2.chrM 2817 346 + 16554 CAACTACGCAAAGGTCCCAACATTGTAGGTCCTTACGGGCTATTACAGCCCTTCGCTGACGCCATAAAACTCTTCACTAAAGAACCCTTAAAACCCTCCACTTC-AACCATTACCCTCTACATCACCGCCCCAACCCTAGCCCTCACCATTGCCCTCTTACTATGAACCCCCCTCCCCAT---ACCCAACCCC---CTAGTCAATCTTAACTTAGGCCTCCTATTTATTCTAGCCACCTCCAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCGAACTACGCCTTAATCGGTGCACTACGAGCAGTAGCCCAAACAATCTCATACGAAGTCACTCTAG
566
+ i panTro2.chrM C 0 C 0
567
+ s hg18.chrM 3400 346 + 16571 CAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCCCCTAAAACCCGCCACATC-TACCATCACCCTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTCTACTATGAACCCCCCTCCCCAT---ACCCAACCCC---CTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCTCATATGAAGTCACCCTAG
568
+ i hg18.chrM C 0 C 0
569
+ s rheMac2.chr5 34438858 346 - 182086969 CAACTATGCAGAAGACACAGAATTGTCGGTCTCGATGGGCTGCTTCAACCATTCGCTGATGCAATAAAACTTTTCACCAAAGAACCCTTACGGCCTTCAAAATC-TGCTATTACCCTTCACATTATTGCTTCAACACTAGCCTTTTCCATCACTCTCCTCTTATGAACTCCCCTCCCTAT---CCCAGACCCT---CTAATTAATTTTAACATAAGCCTCCTATTTATACTAGCCACATCAAGCCCAGCCGTCTCCTCTATTCTATGATCAGGATGAGCATCTAATTCAAATTATGCACTAATCAGCACATTACGAGCTGTGGCCCAAACAATTTCATATGAGGTCACCTTGG
570
+ i rheMac2.chr5 C 0 C 0
571
+ s bosTau2.chrM 3193 346 + 16338 CAACTCCGAAAAGGTCCAAATGTCGTAGGTCCATATGGCCTACTTCAACCCATCGCCGATGCAATCAAACTTTTCATTAAAGAACCACTACGACCCGCTACATC-TTCAGCCTCAATATTTATCCTAGCACCTATCATAGCTTTAGGCCTAGCCTTAACCATGTGAATTCCCCTACCAAT---ACCCTATCCT---CTTATCAACATAAACCTAGGAGTCCTATTTATACTAGCCATATCAAGCCTAGCCGTATACTCCATTCTCTGATCAGGCTGAGCTTCCAACTCAAAATACGCACTAATCGGAGCCCTACGAGCAGTAGCACAAACAATCTCATACGAAGTAACGCTAG
572
+ i bosTau2.chrM C 0 C 0
573
+ s canFam2.chrM 2839 346 + 16727 CAACTTCGAAAAGGACCTAATATTGTAGGCCCCTACGGCCTCCTTCAACCAATCGCAGACGCAGTAAAACTCTTCACAAAAGAACCTCTACGACCACTTACATC-CTCTATATCAATATTCATCCTAGCCCCCATTCTAGCTCTATCACTAGCCCTAACTATGTGAATTCCCCTCCCAAT---ACCCTACCCA---CTCATTAATATAAACTTGGGAGTCCTATTCATACTAGCAATATCAAGCCTCGCCGTGTACTCCATCCTCTGATCAGGATGAGCCTCAAACTCCAAATACGCCCTAATCGGAGCCCTTCGAGCAGTAGCTCAAACAATCTCATATGAAGTAACGCTAG
574
+ i canFam2.chrM C 0 C 0
575
+ s dasNov1.scaffold_23239 6657 346 - 16977 CAGTTACGTAAAGGCCCAAACATCGTAGGACCATACGGCCTACTACAACCAATCGCAGACGCCATTAAACTATTCATCAAAGAACCACTACGACCAGCCACATC-ATCAAAACTCATATTTACCTTAGCACCCACACTAGCACTAACTCTCGCACTTTCACTTTGAATCCCCATCCCAAT---ACCTTACCCA---TTGGTTAACTTAAATTTAGGGGTACTATTCATTTTAGCCATATCAAGCCTAGCTGTCTATTCAATCTTATGGTCAGGATGAGCATCAAACTCCAAATACGCCCTCATCGGAGCCCTTCGAGCAGTAGCACAAACAATTTCCTACGAAGTAACCCTGG
576
+ i dasNov1.scaffold_23239 C 0 C 0
577
+ s loxAfr1.scaffold_36650 5840 346 + 16266 CAACTTCGTAAAGGTCCCAATGTAGTAGGACCTTACGGTCTTCTCCAACCTATTGCAGATGCAATCAAGCTATTTACTAAAGAACCCATCTACCCACAAACCTC-ATCAAAATTCCTATTTACCGTCGCCCCAATTCTAGCCCTAACCTTAGCCCTAACTGTATGAGCTCCTCTTCCAAT---ACCATATCCT---CTAATTAACTTAAATCTGAGCCTACTATTCATTCTCGCAATATCAAGTCTGATAGTTTATTCCATCCTATGATCAGGCTGAGCATCAAACTCAAAATATGCCCTCATAGGAGCCCTGCGAGCAGTAGCCCAAACCATCTCCTATGAAGTCTCTATAA
578
+ i loxAfr1.scaffold_36650 C 0 C 0
579
+ s echTel1.scaffold_181343 2234 346 + 18297 CAACTTCGTAAAGGCCCTAACGTTGTTGGCCCATATGGGCTCTTTCAACCATTTGCTGACGCAATCAAACTATTTACTAAAGAACCGCTACGCCCAATGACTTC-ATCTATAACTATATTTTTACTTGCCCCAATCCTAGCGCTATCCCTAGCTCTTACACTGTGGGTTCCTCTGCCAAT---ACCTCATTCC---CTTGTTAATCTTAACCTAAGCCTCTTATTCATCTTAGCCATATCTAGCCTAGCTGTCTACTCTATTCTATGATCAGGATGAGCATCTAACTCCAACTATGCTCTAATTGGCGCACTCCGAGCAGTCGCCCAAACAATCTCTTATGAAGTCTCTCTAG
580
+ i echTel1.scaffold_181343 C 0 C 0
581
+ s monDom4.chrUn 117154268 346 + 174229318 CAACTCCGAAAAGGCCCAAACGTTATTGGACCATACGGCATCCTACAGCCATTCGCAGACGCTGTAAAATTATTCACAAAAGAACCCCTCCGACCTCTAACTTC-ATCAATCTCAATATTTATTATTGCACCTATTTTAGCCCTAACCTTAGCTCTAACAATCTGAACCCCTCTACCTAT---ACCCCACACC---CTAATTGACTTAAACCTAGGACTTTTATTTATTTTATCCTTATCAGGACTATCAGTTTACTCAATTCTATGATCAGGATGAGCATCAAATTCTAAATATGCACTCATTGGAGCCTTACGAGCCGTAGCTCAAACAATTTCATACGAAGTCACATTAG
582
+ i monDom4.chrUn C 0 C 0
583
+ s galGal2.chrM 4163 346 + 16775 CAGGCCCGAAAGGGCCCAAACATTGTGGGCCCTTTTGGTCTACTCCAACCCGTTGCAGACGGGGTAAAACTATTCATTAAAGAGCCAATCCGACCATCTACCTC-CTCCCCCTTCCTCTTCATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTTGAGTCCCCCTCCCACT---ACCATTCCCC---CTTGCAGACCTCAACCTAGGACTACTATTTCTCCTAGCCATATCAAGCCTAACTGTCTACTCTCTACTCTGATCCGGATGAGCATCAAACTCCAAGTATGCCCTAATCGGAGCCCTTCGAGCCGTCGCACAAACAATCTCATACGAAGTCACCCTAG
584
+ i galGal2.chrM C 0 C 0
585
+ s xenTro2.scaffold_8452 11274 352 + 23823 CAAGTGCGCGTGGGCCCGAACCGCGTCGGCCCGCTGGGCCTGCTGCAACCGCTTGCCGATGGCCTGAAGCTCCTGACCAAGGAAATCATCACACCAACGGCGGC-CAGCAAGGGCCTGTTCTTCCTGGGGCCGGTGATGGCCATCATGCCGGCCCTGGCCGCCTGGGCGGCCATCCCCTTCGGCCCCGACGTCGTGCTGGCGAACGTGAATGCCGGGCTGCTGCTCATCATTGCCATCGCCTCGATCGAGGTCTATGGCGTCATCATCGCGGGCTGGGCGTCCAACTCCAAGTACGCCTTCCTGGGCGCACTGCGTGCCTCGGCGCAGATGGTGAGCTATGAAATCGCCATGG
586
+ i xenTro2.scaffold_8452 n 0 I 124
587
+ s tetNig1.chrUn_random 103512702 346 + 171761319 CAACTACGAAAAGGTCCAAACATCGTAGGCCCTTATGGCCTTCTCCAACCAATTGCAGACGGGGTAAAACTATTTATTAAAGAGCCCGTACGACCCTCAACCTC-CTCCCCAATCCTATTCATCCTCACCCCCATACTAGCCCTCACATTAGCCATAACACTATGAGCCCCCCTACCCCT---TCCATACCCA---GTCCTAGACCTAAACCTAGCCATCCTTTTCATTCTCGCCCTCTCTAGTCTCGCAGTGTATTCAATCCTCGGTTCCGGTTGAGCCTCAAACTCAAAATATGCCTTAGTAGGAGCCCTACGAGCCGTCGCACAAACCATCTCCTATGAAGTAAGCCTAG
588
+ i tetNig1.chrUn_random C 0 C 0
589
+ s danRer4.chrM 3913 346 + 16596 CAACTCCGAAAAGGACCAAATGTAATAGGCCCCCGAGGACTGTTACAATCAGTAGCTGATGGCGTGAAACTTTTTATTAAAGAACCCATTCGACCATCTATGGC-TTCTCCAATTTTATTTTTAACAGCTCCAGTTCTTGCACTAATCCTAGCAATAATGCTATGGGCACCCATACCCAT---GCCCTATCCA---GTACTCGACCTAAATCTTGGAATTTTATTTATTATAGCCATCTCAAGCCTAGCAGTATACTCAATCCTGGGATCAGGTTGAGCATCAAACTCAAAATACGCATTAATTGGGGCCTTACGAGCTGTAGCGCAAACAATTTCATATGAAGTTAGCCTAG
590
+ i danRer4.chrM C 0 C 0
591
+
592
+ a score=274539.000000
593
+ s mm8.chrM 3189 85 + 16299 CTATTATCCTTTTATCAGTTCTATTAATAAATGGATCCTACTCTCTACAAACACTTATTACAACCCAAGAACACATATGATTACT
594
+ s galGal2.chrM 4509 85 + 16775 CCATCATCCTGTTATCCACAATCATACTGAGCGGCAATTACACCTTAAGCACCCTGGCCATCACCCAAGAGCCCATCTACCTCAT
595
+ i galGal2.chrM C 0 C 0
596
+ s monDom4.chrUn 117154614 85 + 174229318 CAATTATTCTGCTTTCAATTATACTAATTAATGGCTCCTTTACCCTAAAAAATTTAATAATTACCCAAGAAAATATATGATTAAT
597
+ i monDom4.chrUn C 0 C 0
598
+ s echTel1.scaffold_181343 2580 85 + 18297 CTATTATTCTGCTATCAGTAATATTATTTAATGGTTCATTCTCTTTGTCCTCCCTCACTATTACTCAAGAACATTTATGACTGCT
599
+ i echTel1.scaffold_181343 C 0 C 0
600
+ s loxAfr1.scaffold_36650 6186 85 + 16266 CAACTATCACCTTATCAATAGTACTAATAAATGGGTCCTTCACACTAACCGCCTTCGCTATAACACAAGAACATCTATGACTAAT
601
+ i loxAfr1.scaffold_36650 C 0 C 0
602
+ s dasNov1.scaffold_23239 7003 85 - 16977 CCATCATCTTACTATCAATCATAATAACAAATGGCTCATTCACCCTATCTACCCTAACAACAACACAAGAACACATATGACTAAT
603
+ i dasNov1.scaffold_23239 C 0 C 0
604
+ s canFam2.chrM 3185 85 + 16727 CAATTATTCTTCTATCAGTCCTCCTAATAAACGGGTCATTTACACTATCCACGCTAATTATTACCCAAGAACATATATGATTAAT
605
+ i canFam2.chrM C 0 C 0
606
+ s bosTau2.chrM 3539 85 + 16338 CAATTATCCTGTTATCAGTACTCCTAATAAGTGGGTCCTTTACCCTCTCCACATTAATTACTACACAAGAACAAATATGGTTAAT
607
+ i bosTau2.chrM C 0 C 0
608
+ s rheMac2.chr5 34439204 85 - 182086969 CCATTATCCTGCTATCAGTTCTACTGATAAGCCGCTCGTTTAACTTATACAAACTCTTCACCATGCAAGAATTCCTCTGACTGCT
609
+ i rheMac2.chr5 C 0 C 0
610
+ s hg18.chrM 3746 85 + 16571 CCATCATTCTACTATCAACATTACTAATAAGTGGCTCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGATTACT
611
+ i hg18.chrM C 0 C 0
612
+ s panTro2.chrM 3163 85 + 16554 CCATTATCCTACTGTCAACGCTACTAATAAGTGGCTCCTTCAATCTCTCTACCCTTGTCACAACACAAGAGCACCTCTGACTAAT
613
+ i panTro2.chrM C 0 C 0
614
+ s oryCun1.scaffold_205008 817 85 - 118789 CAATTATCCTCCTATGCATCCTCCTAATAAATGGCTCATTTACATTATCATCCCTAATCACAACACAAGAATATATATGAATCCT
615
+ i oryCun1.scaffold_205008 C 0 C 0
616
+ s rn4.chrM 3167 85 + 16300 CCTTATACCTCTTATCCGTCCTCCTAATAAGCGGCTCCTTCTCCCTACAAATACTTATCACTACACAAGAACATATCTGACTATT
617
+ i rn4.chrM C 0 C 0
618
+ s tetNig1.chrUn_random 103513048 85 + 171761319 GCCTAATCCTACTCTCCCTAATTATCTTCACTGGGGGCTTCACACTACAAACCTTCAACACCGCCCAAGAAAGTATTTGACTTAT
619
+ i tetNig1.chrUn_random C 0 C 0
620
+ s danRer4.chrM 4259 85 + 16596 GACTTATTCTATTATCTGCCGTTATTTTTTCTGGGGGATACACCCTACAAACATTTAATACAACTCAGGAAGACACATGACTTCT
621
+ i danRer4.chrM C 0 C 0
622
+ e xenTro2.scaffold_8452 11626 124 + 23823 I
623
+
624
+ a score=377866.000000
625
+ s mm8.chrM 3274 64 + 16299 TCTGCCAGCCTGACCCATAGCCATAATATGATTTATCTCAACCCTAGCAGAAACAAACCGGGCC
626
+ s rn4.chrM 3252 64 + 16300 AATCCCCGCCTGACCAATAGCCATAATATGATACATTTCAACCCTCGCAGAAACAAATCGAGCT
627
+ i rn4.chrM C 0 C 0
628
+ s oryCun1.scaffold_205008 902 64 - 118789 ACTACCAGCATGACCACTTGCCATAATATGATTTATCTCAACCCTAGCAGAAACCAACCGGGCT
629
+ i oryCun1.scaffold_205008 C 0 I 2359
630
+ s panTro2.chrM 3248 64 + 16554 CCTGCCAACATGACCCCTGGCCATAATATGATTTATCTCTACACTAGCAGAGACCAACCGAACT
631
+ i panTro2.chrM C 0 C 0
632
+ s hg18.chrM 3831 64 + 16571 CCTGCCATCATGACCCTTGGCCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAACC
633
+ i hg18.chrM C 0 C 0
634
+ s rheMac2.chr5 34439289 63 - 182086969 CCTACCATCATGGCCC-TAGCCATAACATGATTCATCTCCACACTAGCAGAAACTAACCGAGCC
635
+ i rheMac2.chr5 C 0 C 0
636
+ s bosTau2.chrM 3624 64 + 16338 CCTCCCAGCATGGCCTCTAGCAATAATATGATTTATCTCAACACTAGCAGAAACAAACCGAGCT
637
+ i bosTau2.chrM C 0 C 0
638
+ s canFam2.chrM 3270 64 + 16727 CTTTCCGGCCTGACCCCTAGCCATGATATGATTCATCTCTACCCTAGCAGAAACTAATCGAGCC
639
+ i canFam2.chrM C 0 C 0
640
+ s dasNov1.scaffold_23239 7088 64 - 16977 CTTTCCCCTCTGGCCACTAGCAATAATATGATTTATCTCCACACTAGCAGAAACCAATCGCGCC
641
+ i dasNov1.scaffold_23239 C 0 C 0
642
+ s loxAfr1.scaffold_36650 6271 64 + 16266 CCTTCCTATATGACCCCTGATAATAATATGATTCACATCAACCTTAGCAGAAACTAACCGAGCC
643
+ i loxAfr1.scaffold_36650 C 0 C 0
644
+ s echTel1.scaffold_181343 2665 64 + 18297 AGTCCCCTCATGACCCCTAGCAATAATATGATTCATCTCAACACTAGCAGAAACTAACCGGGCC
645
+ i echTel1.scaffold_181343 C 0 C 0
646
+ s monDom4.chrUn 117154699 64 + 174229318 TATAACCGCATGACCTCTAACTATAATATGGTATATTTCTACATTAGCCGAGACAAACCGAGCT
647
+ i monDom4.chrUn C 0 C 0
648
+ s galGal2.chrM 4594 64 + 16775 TTTTTCCGCATGACCCCTCGCAATAATATGATACATCTCTACCCTTGCTGAAACCAACCGCGCC
649
+ i galGal2.chrM C 0 C 0
650
+ s xenTro2.scaffold_8452 11750 64 + 23823 GCTGCCGCTGCTGCCCATCTTCGTGGTCTACCTGATTTCCAGCGTGGCCGAAACCAACCGCCAC
651
+ i xenTro2.scaffold_8452 I 124 C 0
652
+ s tetNig1.chrUn_random 103513133 64 + 171761319 CATCCCAACCTGACCCCTTGCCGCAATATGATACATCTCCACCCTAGCAGAAACCAACCGAGCC
653
+ i tetNig1.chrUn_random C 0 C 0
654
+ s danRer4.chrM 4344 64 + 16596 ACTTCCACTATGACCATTAGCCATTATATGATTTATCTCAACGCTGGCAGAAACAAACCGAGCA
655
+ i danRer4.chrM C 0 C 0
656
+
657
+ a score=1445299.000000
658
+ s mm8.chrM 3338 294 + 16299 CCCTTCGACCTGACAGAAGGAGAATCAGAATTAGTATCAGGGTTTAACGTAGAATACGCAGCCGGCCCATTCGCGTTATTCTTTATAGCAGAGTACACTAACATTATTCTAATAAACGCCCTAACAACTATTATCTTCCTAGGACCCCTATA--CTATATCAATTTACCAGAACTCTACTCA-------ACTAACTTCATAATAGAAGCTCTACTACTATCATCAACATTCCTATGGATCCGAGCATCTTATCCACGCTTCCGTTACGATCAACTTATACATCTTCTATGAAAAAACTTTCTA
659
+ s rn4.chrM 3316 294 + 16300 CCCTTCGACTTAACAGAAGGAGAATCAGAATTAGTCTCAGGCTTTAACGTCGAATACGCCGCAGGACCATTCGCCCTATTCTTCATAGCCGAGTACACCAACATTATTCTAATAAACGCCCTAACATCAATTGTATTCCTAGGCCCCTTATA--TCATATCAATTACCCTGAATTATACTCA-------ACCAGCTTCATAACAGAAACACTACTTCTATCCACAACTTTCCTATGGATTCGAGCATCCTACCCCCGTTTTCGATATGACCAACTAATGCACCTCCTATGAAAAAATTTCCTC
660
+ i rn4.chrM C 0 C 0
661
+ s oryCun1.scaffold_140182 3485 294 + 20791 CTCATTGACTTAACCGAAGGTGAATCAGAGCTCGTCTCCGGCTTCAATGTGGAGTACGCAGGAGGCCCCTTTGCTCTTTTCTTTTTAGCTGAATATACTAATATTATCCTTATAAATGCCCTTACAGCCATCCTATTCCTAGGCTCATTTCA--CAGCCACACTAACCCAGAAATATTTACA-------GTCAACTTTGCCACAAAGACTCTCCTACTCACAATAACATTTCTATGGATTCGAGCATCCTATCCCCGATTTCGCTATGACCAGCTAATACACCTCTTGTGAAAAAGTTTTCTA
662
+ i oryCun1.scaffold_140182 M 1789 C 0
663
+ s panTro2.chrM 3312 294 + 16554 CCCTTCGACCTTACTGAAGGAGAATCTGAACTAGTCTCAGGCTTTAATATCGAGTATGCCGCAGGCCCCTTTGCCCTATTTTTCATAGCCGAATACATAAACATTATTATAATAAACACCCTCACTGCTACAATCTTCCTAGGAGCAACATA--CAATACTCACTCCCCTGAACTCTACACG-------ACATATTTTGTCACCAAAGCTCTACTTCTAACCTCCCTGTTCCTATGAATTCGAACAGCATATCCCCGATTTCGCTACGACCAGCTCATACACCTCCTATGAAAAAACTTCCTA
664
+ i panTro2.chrM C 0 C 0
665
+ s hg18.chrM 3895 294 + 16571 CCCTTCGACCTTGCCGAAGGGGAGTCCGAACTAGTCTCAGGCTTCAACATCGAATACGCCGCAGGCCCCTTCGCCCTATTCTTCATAGCCGAATACACAAACATTATTATAATAAACACCCTCACCACTACAATCTTCCTAGGAACAACATA--TGACGCACTCTCCCCTGAACTCTACACA-------ACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAACAGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTA
666
+ i hg18.chrM C 0 C 0
667
+ s rheMac2.chr5 34439352 294 - 182086969 CCTTTTGATCTATCAGAAGGAGAGTCAGAGTTAGTCTCAGGCTTCAACATCGAATACGCCACAGGCTCATTTGTCCTCTTCTTTATAGCAGAATATATGAATATTATCATAATAAATGCCCTAACTACTGCTATTTTCATAGGAGTACTACA--CACTATATACTCACCAGAATTCTATACT-------ACAAATTTCATTACCAAGACCCTTCTTTTAACCACTCTATTTTTATGAATTTGAATGGCATACCCTCAATTCCACTGTGACCAACTCATACATCTTTTATGAAAAAACTTCCTA
668
+ i rheMac2.chr5 C 0 C 0
669
+ s bosTau2.chrM 3688 294 + 16338 CCATTTGATTTAACTGAAGGAGAATCAGAGCTAGTCTCGGGCTTCAACGTAGAATATGCAGCAGGACCATTTGCCCTCTTCTTCATAGCAGAGTACGCAAATATTATCATAATAAATATCTTTACAGCAATTTTATTCCTAGGAACATCCCA--CAATCCACACATACCAGAACTCTACACA-------ATCAATTTTACCATTAAATCCCTACTGCTCACAATATCCTTCCTATGAATCCGAGCATCCTACCCTCGATTTCGCTATGACCAACTAATACACTTACTATGAAAAAATTTTCTA
670
+ i bosTau2.chrM C 0 C 0
671
+ s canFam2.chrM 3334 294 + 16727 CCCTTCGACTTAACTGAAGGAGAATCCGAACTAGTCTCTGGATTTAACGTAGAGTATGCAGCAGGTCCTTTCGCCCTATTCTTTCTAGCAGAGTACGCAAATATTATTATAATAAACATCCTCACAACAATTCTGTTCTTCGGCGCATTCCA--CAACCCATTCATACCAGAACTCTACTCT-------ATTAACTTCACTATAAAAACCCTCTTATTAACCATCTGCTTCCTATGAATTCGAGCATCATACCCTCGATTCCGCTACGATCAGTTAATACACTTATTATGAAAAAATTTTCTA
672
+ i canFam2.chrM C 0 C 0
673
+ s dasNov1.scaffold_23239 7152 294 - 16977 CCATTCGACCTAACAGAAGGTGAATCAGAATTAGTGTCCGGATTCAACGTCGAATATGCAGCAGGGCCATTTGCCCTATTCTTTTTAGCTGAGTATGCCAACATCATTATAATAAATGCACTAACAGCCATTTTATTTTTTGGGGCCATACA--CAACCCAATATTCCCAGAACTACACACC-------CTAAACTTAATCACAAAAACCCTGATTCTTACTATAATATTTCTATGAGTACGCGCATCCTATCCACGATTCCGCTATGACCAACTAATACACCTCCTATGAAAAAGCTTTCTC
674
+ i dasNov1.scaffold_23239 C 0 C 0
675
+ s loxAfr1.scaffold_36650 6335 294 + 16266 CCATTTGATTTAACCGAAGGAGAATCAGAATTAGTTTCTGGCTTCAATGTCGAATACTCAGCTGGCCCTTTCGCCCTATTTTTTATAGCTGAATACGCTAACATCATCATAATAAACGCTCTTACTGTGATTCTATTTATAGGAACCTCTTA--TGACCCCCAAATACCAGAAATTAGTACC-------ATTAACTTTGTCATAAAAACTATTATCCTAACCATCTGCTTTCTATGAGTACGAGCATCTTACCCACGATTCCGATACGACCAACTAATACATCTCCTCTGAAAAAATTTTCTC
676
+ i loxAfr1.scaffold_36650 C 0 C 0
677
+ s echTel1.scaffold_181343 2729 294 + 18297 CCATTTGACTTAACAGAAGGGGAATCAGAATTAGTTTCAGGCTTTAACGTTGAATATGCAGCAGGGCCCTTCGCTCTATTTTTCCTTGCAGAATACGCTAACATCATTATAATGAATGCTCTAACCACTATTCTATTTATAGGAGCATTTCA--TAATATATCTGTTACAGAAATTTACACG-------TTAAATTTTATTACAAAAACACTACTTCTCACTATACTATTTTTATGAGTTCGAGCATCATACCCTCGATTTCGATATGATCAACTAATACATTTATTATGAAAAAACTTCTTA
678
+ i echTel1.scaffold_181343 C 0 C 0
679
+ s monDom4.chrUn 117154763 294 + 174229318 CCTTTTGACCTGACAGAAGGAGAGTCGGAATTAGTCTCAGGTTTTAATGTGGAATATGCCGCTGGACCCTTCGCTATATTCTTTTTAGCAGAGTACGCCAACATTATAGCAATAAATGCCATAACAACAATTCTCTTCCTGGGGCCCCCCCT--AAACCACAACCACACTTATACCTGCACC-------ATTAGCTTCATATTCAAAACAATATTACTAACATCAGCCTTCCTATGAGTACGAGCATCATACCCTCGCTTTCGATATGATCAATTAATGTACTTATTATGAAAAAGCTTCCTC
680
+ i monDom4.chrUn C 0 C 0
681
+ s galGal2.chrM 4658 294 + 16775 CCATTTGACCTAACAGAAGGAGAGTCAGAGCTAGTCTCAGGATTTAATGTAGAATATGCCGCCGGACCATTCGCCATATTCTTCTTAGCCGAATACGCCAACATTATACTAATAAACACACTAACCACCGTCCTATTCCTGAACCCAAGCTT--CCTAAATCTCCCACCAGAATTATTTCCC-------ATTGCACTCGCTACAAAAACCCTCCTCCTTTCATCCTCATTTCTATGAATCCGGGCCTCATATCCACGGTTCCGCTATGACCAACTAATACATCTTCTATGAAAAAACTTCCTC
682
+ i galGal2.chrM C 0 C 0
683
+ s xenTro2.scaffold_8452 11814 303 + 23823 CCGTTCGACGTGGTCGAAGGCGAGGCCGAGATCGTGGCTGGTCATATGGTCGAGTATTCGGGCATGGGCTTCGCCATCTTCTTCCTGGCTGAATACGCCGCGATGTGGCTGGTTTCCATCCTGGCCGTGCTGATGTTCCTGGGCGGCTGGCTGCCACCGTTCGCGGCCCTGTCCTTCATCCCGGGCTGGATCTGGCTGGCGGCCAAGACCTTCCTGGTGGTCTCCATGTTCATCTGGATCCGTGCCACCTTCCCGCGCTACCGCTATGACCAGATCATGCGCCTGGGCTGGAAGATCTTCATC
684
+ i xenTro2.scaffold_8452 C 0 I 1675
685
+ s tetNig1.chrUn_random 103513197 294 + 171761319 CCATTTGATCTAACTGAAGGCGAGTCAGAACTAGTTTCTGGTTTTAACGTAGAATACGCAGGAGGCCCTTTCGCCCTATTCTTCCTCGCAGAATACGCCAACATCCTATTTATAAACACCCTTTCCGCCAGCCTCTTCCTAGGAGCCTCCCA--TATCCCAATACTTCCAGAACTGACCACA-------ATAAACCTAATAACCAAAGCAGCCGTCCTCTCACTCGTCTTCCTATGGGTACGAGCCTCCTACCCACGATTTCGCTATGACCAACTAATACACCTTATCTGAAAAAACTTCTTA
686
+ i tetNig1.chrUn_random C 0 C 0
687
+ s danRer4.chrM 4408 294 + 16596 CCGTTCGATCTTACAGAGGGGGAATCAGAACTAGTCTCAGGCTTCAATGTAGAGTATGCAGCAGGACCATTTGCCTTATTCTTTTTGGCTGAGTACTCAAATATTTTACTAATAAACACCCACTCAACAGTACTATTTTTAGGAGCATCGTT--TACCCCAGATGCACCTGAGCTAATAACA-------ATCAGTATTGCAACCAAAACTGCAATACTATCTATTTTGTTTCTCTGAATACGAGCATCATACCCACGATTCCGATACGACCAACTTATGCATCTTATCTGGAAAAACTTTCTT
688
+ i danRer4.chrM C 0 C 0
689
+
690
+ a score=692934.000000
691
+ s mm8.chrM 3632 140 + 16299 CCCCTAACACTAGCATTATGTATGTGACATATTTCTTTACCAATTTTTACAGCGGGAGTACCACCATACATATA------GAAATATGTCTGA--T---AA--AAGAATTACTTTGATAGAGTAAATTATAGAGG-TTCA--AGCCCTCTTAT-TTc-
692
+ s rn4.chrM 3610 140 + 16300 CCACTAACACTAGCATTCTGCATATGATACATTTCCCTGCCAATTTTCCTAGCAGGAATTCCACCCTACACATA------GAAATATGTCTGA--C---AA--AAGAGTTACTTTGATAGAGTAAATAATAGAGG-TTTA--AATCCTCTTAT-TTc-
693
+ i rn4.chrM C 0 I 71
694
+ s oryCun1.scaffold_140182 3779 141 + 20791 CCCCTCACATTAGCCCTGTGCATATGACATATCTCAATACCTATCATACTTTCAAGTATCCCTCCTCAGATATA------GAAATATGTCTGA--T---AA--AAGAGTTACTTTGATAGAGTAAATAATAGAGGATCTT--AGCCCTCTTAT-TTc-
695
+ i oryCun1.scaffold_140182 C 0 I 77
696
+ s panTro2.chrM 3606 141 + 16554 CCACTCACCCTAGCATCACTCATGTGATATATCTCCATACCCACTACAATCTCCAGCATCCCCCCTCAAACCTAA-----GAAATATGTCTGA--T---AA--AAGAATTACTTTGATAGAGTAAATAATAGGAG-TTCA--AATCCCCTTAT-TTc-
697
+ i panTro2.chrM C 0 I 70
698
+ s hg18.chrM 4189 141 + 16571 CCACTCACCCTAGCATTACTTATATGATATGTCTCCATACCCATTACAATCTCCAGCATTCCCCCTCAAACCTAA-----GAAATATGTCTGA--T---AA--AAGAGTTACTTTGATAGAGTAAATAATAGGAG-CTTA--AACCCCCTTAT-TTc-
699
+ i hg18.chrM C 0 I 70
700
+ s rheMac2.chr5 34439646 136 - 182086969 CCACTTACACTAGCATTTTGC-----ATATATCTCAATGCTTGTCCTAATTTCCACCATCCCACCCTAAACATAG-----GCAATATGTCAGA--C---AA--AAGAATTACTTTGATAGAGTAAACAATAGAGA-TTAA--AATCCTCTGAT-TTc-
701
+ i rheMac2.chr5 C 0 I 71
702
+ s bosTau2.chrM 3982 141 + 16338 CCTCTGACACTAGCCCTGTGCATGTGACACGTATCCCTACCCATCCTTACATCAGGCATCCCACCACAAACATAA-----GAAATATGTCTGA--C---AA--AAGAGTTACTTTGATAGAGTAAATAATAGAGG-TTCA--AACCCTCTTAT-TTc-
703
+ i bosTau2.chrM C 0 I 71
704
+ s canFam2.chrM 3628 141 + 16727 CCCTTAACTTTAGCCCTATGCATATGACATGTTGCCTTACCCATTATCACCGCAAGTATCCCACCCCAAACATAA-----GAAATATGTCTGA--T---AA--AAGAGTTACTTTGATAGAGTAAATAATAGAGG-TTTA--AATCCTCTTAT-TTc-
705
+ i canFam2.chrM C 0 I 72
706
+ s dasNov1.scaffold_23239 7446 140 - 16977 CCACTTACATTAGCATTATGTATACTCCACGTATCAGCCCCAGCAACATTCGCAGGCGTACCCCCACACATATA------GGAATATGTCTGA--T---AA--AAGAATTACTTTGATAGAGTAAATAATAGAGG-TTTG--AACCCTCTTAT-TCc-
707
+ i dasNov1.scaffold_23239 C 0 I 72
708
+ s loxAfr1.scaffold_36650 6629 140 + 16266 CCACTAACTCTAGCTCTATGCATATGACACATCTCAGTCCTAATCTCACTAGCATGTATTCCACCACAAGCATA------GAAATATGTCTGA--C---AA--AAGAATTACTTTGATAGAGTAAATTATAGAGG-TCTG--AACCCTCTTAT-TTc-
709
+ i loxAfr1.scaffold_36650 C 0 I 71
710
+ s echTel1.scaffold_181343 3023 140 + 18297 CCAATAACCTTAGCCCTATGCATATGATACATCTCCATTCCTGTCATATTAGCTAGTATTCCCCCTCAAATATA------GAAACATGTCTGA--T---AA--AAGAGTTACTTTGATGGAGTAAATAATAGAGG-TTTA--AATCCCCTTGT-TTc-
711
+ i echTel1.scaffold_181343 C 0 I 67
712
+ s monDom4.chrUn 117155057 141 + 174229318 CCAATTACCCTAGCACTATGTCTAATATTTATCTCTATTCCAATTGCACTATCAAGTATCCCACCACAAATATAA-----GAAATATGTCTGA--C---AA--AAGAATTATCTTGATAGGATAAATAATAGGGG-TTCA--AACCCCCTTAT-TTc-
713
+ i monDom4.chrUn C 0 I 70
714
+ s galGal2.chrM 4952 142 + 16775 CCCCTAACCCTAGCCTTATGCCTCTGACATACCAGCATACCAATCAGCTACGCCGGCCTCCCCCC---AATCTAAG----GAAGCGTGCCTGAACA---AA--AAGGATCACTATGATAAAGTGAAC-ATAGAGG-TATAACAACCCTCTCAC-TTC-
715
+ i galGal2.chrM C 0 I 75
716
+ s xenTro2.scaffold_18215 2547 143 + 3330 CCAATCACACTAGCAATAACACTATGACACATCTCCTTACCAATCTCTCTATCAGGCCTACCACCTCAGATATAG-----GAAACGTGCCCGA--A---AGTTAGGGATCACTNTGATAGAGTGAAACATAGGGG-TTCA--AACCCCCTCGT-CTC-
717
+ i xenTro2.scaffold_18215 M 690 I 2
718
+ s tetNig1.chrUn_random 103513491 148 + 171761319 CCCCTAACATTAGCACTTGTTATCTGACACCTGGCACTCCCAATCACATTTGCAGGCCTCCCGCCTCAAATATAGC-CAGGAGCTGTGCCTGA--AT--TA--AAGGGCCACTTTGATAGAGTGAACCATGGGGG-TTAA--ATTCCCCCCAGCTCCT
719
+ i tetNig1.chrUn_random C 0 C 0
720
+ s danRer4.chrM 4702 150 + 16596 CCAATCACATTAGTTCTAGTACTATGACATATCGCCCTACCAATCGCACTAGCTGGTCTACCCCCACAAACATAACTCAAGAACCGTGCCCGA--ATGCTA--AGGGGTCACTTTGATGGAGTGAACCATAGGGG-TTAA--AATCCCCTCGG-TTCT
721
+ i danRer4.chrM C 0 C 0
722
+
723
+ a score=14911.000000
724
+ s mm8.chrM 3772 70 + 16299 taggacaataggaattgaacctacacttaag-----------aattcaaaattctccgtgctacctaaacaccttatccta
725
+ s xenTro2.scaffold_18215 2692 70 + 3330 TAGAAAGACAGGAATTGAACCTGCACCTGAG-----------AGATCAAAACCCTCCGTACTCCCACTATACCACTCTCTA
726
+ i xenTro2.scaffold_18215 I 2 C 0
727
+ s tetNig1.chrUn_random 103513639 70 + 171761319 TAGAAAGAAGGGACTCGAACCCAACCCAGAGAGATCAAAACT-----------CTCAGTGCTTCCACTACACCACTTTCTA
728
+ i tetNig1.chrUn_random C 0 C 0
729
+ s danRer4.chrM 4852 70 + 16596 TAGAAAGAAGGGGGTCGAACCCATGCCCAAG-----------AGATCAAAACTCTTAGTGCTTCCACTACACCACTTTCTA
730
+ i danRer4.chrM C 0 C 0
731
+ e monDom4.chrUn 117155198 70 + 174229318 I
732
+ e echTel1.scaffold_181343 3163 67 + 18297 I
733
+ e loxAfr1.scaffold_36650 6769 71 + 16266 I
734
+ e dasNov1.scaffold_23239 7586 72 - 16977 I
735
+ e canFam2.chrM 3769 72 + 16727 I
736
+ e bosTau2.chrM 4123 71 + 16338 I
737
+ e rheMac2.chr5 34439782 71 - 182086969 I
738
+ e panTro2.chrM 3747 70 + 16554 I
739
+ e hg18.chrM 4330 70 + 16571 I
740
+ e rn4.chrM 3750 71 + 16300 I
741
+ e oryCun1.scaffold_140182 3920 77 + 20791 I
742
+ e galGal2.chrM 5094 75 + 16775 I
743
+
744
+ a score=791168.000000
745
+ s mm8.chrM 3842 168 + 16299 ATAG--TAAGGTCAGCT-AA-T-TAAGCTATCGGGCCCATACCCCGAAAACGTTGGTTTAAATCCTTCCCGTACTAATAAATCCTATCACCCTTGCCATCATCTACTTCA--CAATCTTCTTAGGTCCTGTAATCACAATATCCAGCACCAACCTAATACTAATATGAGTAGGCC
746
+ s rn4.chrM 3821 167 + 16300 ATAG--TAAGGTCAGCT-AA-C-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTT-AAACCCTTCCCGTACTAATAAATCCAATTACCCTAACCATTATTTACTTAA--CCACCTTTAAAGGCCGCCTAATCACGACACTTAGCACCAACTTACCACCAATATGAGTAGGAT
747
+ i rn4.chrM I 71 C 0
748
+ s oryCun1.scaffold_140182 3997 168 + 20791 TAAG--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTATATCCTTCCCGTACTAATTAACCCCCTAACTCTTATTATTATTATATTTA--CTCTATTTATAGGCACGATAATCACAGTATTTAGCTCCCACTGACTAACTATATGAATCGGAT
749
+ i oryCun1.scaffold_140182 I 77 C 0
750
+ s hg18.chrM 4400 167 + 16571 aAAG--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTT-ATACCCTTCCCGTACTAATTAATCCCCTGGCCCAACCCGTCATCTACTCTA--CCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTTACCTGAGTAGGCC
751
+ i hg18.chrM I 70 C 0
752
+ s panTro2.chrM 3817 167 + 16554 aAAG--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTT-ACACCCTTCCCGTACTAATTAATCCCCTAGCCCAACCCATCATCTACTCTA--CCATCCTTACAGGCACGCTCATTACAGCGCTAAGCTCACACTGATTTTTCACCTGAGTAGGCC
753
+ i panTro2.chrM I 70 C 0
754
+ s rheMac2.chr5 34439853 160 - 182086969 -GAT--TAAGGTCAGCT-AA-A-TAAGCTATTGGGCCCATACACCGAAAATGTTGGTT-ATACCCTTCCCGTAC--------CCCTTAGCTCAACTTATTATTTCCCTCAGCCCATTTTCACAGGAACTCATATCACAATGCTATGCTCACACTGATTTCTAATCTGAACAGGGC
755
+ i rheMac2.chr5 I 71 C 0
756
+ s bosTau2.chrM 4194 168 + 16338 TTAG--TAAGGTCAGCT-AA-T-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTATATCCTTCCCGTACTAATAAACCCAATTATCTTTATTATTATTCTACTAA--CCATTATACTAGGAACTATTATTGTCATAATCAGTTCTCACTGACTACTTGTCTGAATCGGGT
757
+ i bosTau2.chrM I 71 C 0
758
+ s canFam2.chrM 3841 169 + 16727 aCAG--TAAGGTCAGCTAAA-T-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTATACCCTTCCCGTACTAATAAAACCCCCTATTCTCATTATCATCATAGCAA--CTATCATGACAGGAACCATAATCGTCATACTAAGCTCGCACTGATTACTGATCTGAATTGGAT
759
+ i canFam2.chrM I 72 C 0
760
+ s dasNov1.scaffold_23239 7658 166 - 16977 --AG--TAAGGTCAGCT-AA-C-AAAGCTATCGGGCCCATACCCCGAAAATGTAGGCTCATACCCTTCCCGTACTAATAAATCCCttaatttttattattattatattta--CCTTAATCTTAGGAACAGTAATTACCATAATTAGCTCCCATTGATTATTAATCTGGATAGGCC
761
+ i dasNov1.scaffold_23239 I 72 C 0
762
+ s loxAfr1.scaffold_36650 6840 169 + 16266 CTAG--TAAGGTCAGCT-AA-ATTAAGCTATCGGGCCCATACCCCGAAAATGTCGGATCACACCCCTCCCATACTAATAAACCCACTAGCTCTTAGCCTAATCCTAACAA--CACTACTCGCAGGAACACTGATTACCATAATAAGCTCCCATTGATTGACAGCCTGAATGGGAC
763
+ i loxAfr1.scaffold_36650 I 71 C 0
764
+ s echTel1.scaffold_181343 3230 167 + 18297 ctaG--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTAT-TCCTTCCCATACTAATTAACCCATTAGCTTCCATTATTATGTCTAGTA--CTCTAATTTCAGGCACTCTAATTACTTTAATCAGCTCTCACTGACTTATAGCATGAATAGGTC
765
+ i echTel1.scaffold_181343 I 67 M 371
766
+ s monDom4.chrUn 117155268 165 + 174229318 ---G--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTGCACCCTTCCCATACTAATGTCCCCCTATGTATTAACCATTGTTTCGCTCA--GCTTATTAACAGGAACTTCAGTAACTCTAATTAGCAACCATTGGTTAACTGCCTGAATAGGCC
767
+ i monDom4.chrUn I 70 C 0
768
+ s galGal2.chrM 5169 168 + 16775 CTAG--TAAGGTCAGCT-AA-C-TAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTACTAATGAACCCCCATGCAAAACTAATCTGCACAGTAA--GCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCT
769
+ i galGal2.chrM I 75 C 0
770
+ s xenTro2.scaffold_18215 2762 165 + 3330 ---G--TAAAGTCAGCT-AA-A-AAAGCTTTTGGGCCCATACCCCAAACATGTTGGTTAAACTCCTTCCTTTACTAATGAACCCTATCGCACTATCAATAATCCTCTCAA--GCCTAGCATTAGGCACTATCCTCACTGTATCAAGCAATCATTGATTCCTAGCCTGAATAGGCC
771
+ i xenTro2.scaffold_18215 C 0 C 0
772
+ s tetNig1.chrUn_random 103513709 166 + 171761319 ---G--TAAAGTCAGCT-AAGT-TAAGCTTTTAGGCCCATACCCTAAAGATGTAGGTTAAAATCCTTCCTTTACTAATGAGCCCTTACATTACAGCCTCCTTGCTATTTG--GCCTACTCCTAGGCACAACAATCACCGCAACCAGCTCCCACTGACTAATTGCCTGAATAGGCC
773
+ i tetNig1.chrUn_random C 0 C 0
774
+ s danRer4.chrM 4922 167 + 16596 ---GGATGAGGTCAGCT-AA-T-TAAGCTACCGGGCCCATACCCCGAACATGATGGTTAAAGTCCCTCCTTCATCAATGAACCCTTATGTCCTTATAATTTTAATATCCA--GCCTAGGTCTAGGAACCACATTAACTTTTTCTAGCTCACACTGAATTTTAGCCTGAATAGGAT
775
+ i danRer4.chrM C 0 C 0
776
+
777
+ a score=1213783.000000
778
+ s mm8.chrM 4010 399 + 16299 TGGAATTCAGCCTACTAGCAATTATCCCCATACTAATCAACAAAAAAAACCCACGATCAACTGAAGCAGCAACAAAATACTTCGTCACACAAGCAACAGCCTCAATAATTATCCTCCTGGCCATCGTACTCAACTATAAACAACTAGGAACATGAAT--ATTTCAACAACAAAC-AAACGGTCTTATCCTTAAC----ATAACATTAATAGCCCTATC------CATAAAACTAGGCCTCGCCCCATTCCACTTCTGATTACCAGAAGTAACTCAAGGGATCCCACTGCACATAGGACTTATTCTTCTTACATGACAAAAAATTGCTCCCCTATCAATTTTAATTCAAATTTACCCGCTACTCAACTCTA--CTATCATTTT----------AATA-CTAGCAATTACTTCTATTTTCATAGGGG
779
+ s rn4.chrM 3988 399 + 16300 TGGAAATAAGCCTTTTAGCTATCATCCCACTTCTAGCCAACAAAAAAAGCCCACGATCAACTGAAGCAGCAACAAAATATTTTCTAACCCAAGCTACAGCCTCAATAATTATCCTACTAGTCATCATCCTCAACTACAAACAATCAGGAATATGAAC--CCTTCAACAACAAAC-CAATAACATACTACTCAAC----ATAATACTCATTTCACTGGC------CATAAAACTTGGACTAGCCCCATTCCACTACTGACTACCCGAAGTCACCCAAGGAATTCCCCTACACATTGGATTAATCTTACTAACATGACAAAAAATTGCTCCACTATCAATTCTATACCAATTTTATCAACTCCTAAACCCAA--CTATCACCAC----------CATT-CTCGCAATTTCATCAGTCTTTGTTGGCG
780
+ i rn4.chrM C 0 C 0
781
+ s oryCun1.scaffold_140182 4165 399 + 20791 TAGAAATAAACATACTAGCAATTATCCCTATTCTAATCAACAAAGCCACCCCACGATCAACAGAAGCTGCAACCAAATATTTTCTAACACAAGCCACAGCATCTATAATCTTAATAATAGCTATTACACTTAATATCCTTGACTCCGGACAATGAAC--CCT-----AATTAAT-CCACAGAATCA-ACTTACT----CCAGTCCTAATTACACTGGCACTAATCATTAAACTAGGAATAGCCCCCTTCCACTTCTGAGTACCAGAGGTCACCCAAGGAGTTCCCCTAAAATCAGGATTAATCCTTCTCACGTGACAAAAATTAGCCCCCCTATCCATCCTTTACCAAATCTCCCCATCAATTAATCCAA--CTATAATAAT----------ATCA-GTAGCCATTCTATCAATTATAGTTGGCG
782
+ i oryCun1.scaffold_140182 C 0 C 0
783
+ s hg18.chrM 4567 399 + 16571 TAGAAATAAACATGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCCATAATCCTTCTAATAGCTATCCTCTTCAACAATATACTCTCCGGACAATGAAC--CAT-----AACCAATACTACCAATCAATACTCATCATTAATAATCATAATGGCTATAGC------AATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAGGCACCCCTCTGACATCCGGCCTGCTTCTTCTCACATGACAAAAACTAGCCCCCATCTCAATCATATACCAAATCTCTCCCTCACTAAACGTAA--GCCTTCTCCT----------CACT-CTCTCAATCTTATCCATCATAGCAGGCA
784
+ i hg18.chrM C 0 C 0
785
+ s panTro2.chrM 3984 399 + 16554 TAGAAATAAATATACTAGCTTTTATCCCAATCCTAACCAAAAAAATAAGCCCCCGCTCCACAGAAGCCGCCATCAAATACTTTCTCACACAAGCAACTGCGTCCATAATTCTCCTGATAGCTATCCTCTCCAACAGCATACTCTCCGGACAATGAAC--CAT-----AACCAATACTACCAATCAATACTCATCATTAATAATTATAATAGCAATGGC------AATAAAACTAGGAATAGCCCCCTTTCACTTTTGAGTTCCAGAAGTTACCCAAGGCACCCCCCTAATATCCGGCCTACTCCTCCTCACATGACAAAAATTAGCCCCTATTTCAATTATATACCAAATCTCCTCATCACTGAACGTAA--ACCTTCTCCT----------CACC-CTTTCAATCTTGTCCATTATAGCAGGCA
786
+ i panTro2.chrM C 0 C 0
787
+ s rheMac2.chr5 34440013 395 - 182086969 TAGAAATAAACATACTAGCACTTACCCTAATCTTAATTAAAAAAATAAATCCCCGCTCTACAGAAGCAGCCACCAAATATTTCCTTACACAAGCAACCATATCTATAATTCTCATGACAGGTATCCTTTCCAATAACCTGTTCTCCAGACAATGAAA--AAT-----AATAAACACTATCAATCAATTCTTATCCTTAATAATAATAGTGGCCCTAGT------AATAAAACTAGGAATATTCCCCTTTCACTTCTGAGTCTCAGTGATAACCCAAGGAATCTCTTTAATGTCTGGTATACTTCTCCTCACATGACAAAAAGTAGCTCTTATCTCTATTATGTTTCAAAGTTTTTCATCAACAAACAGGA--ACATCCTCCT----------AACA-----CAATCCTATCCATTATAGTGGGTG
788
+ i rheMac2.chr5 C 0 C 0
789
+ s bosTau2.chrM 4362 399 + 16338 TTGAAATAAATATACTCGCCATCATCCCCATCATAATAAAAAATCACAACCCACGAGCTACAGAAGCATCAACTAAATATTTTTTGACTCAATCAACAGCCTCAATACTACTAATAATAGCCGTCATCATTAACCTAATATTCTCAGGCCAATGAAC--CGT-----AATAAAACTATTTAACCCAATAGCCTCAATACTTATAACGATAGCCCTAGC------TATAAAACTAGGAATAGCCCCATTTCACTTCTGAGTCCCAGAAGTAACACAGGGCATCCCCCTATCCTCAGGCCTTATCCTACTGACATGACAAAAACTAGCACCTATATCTGTACTTTACCAAATCTTCCCATCAATTAACCTAA--ACTTAATTCT----------AACC-CTATCAGTTTTATCAATCCTAATTGGAG
790
+ i bosTau2.chrM C 0 C 0
791
+ s canFam2.chrM 4010 399 + 16727 TCGAAATAAACATGCTAGCCATCATCCCTATTCTCATAAAAAAGTACAATCCACGAGCCATAGAGGCCTCTACAAAATATTTTCTTACACAAGCTACAGCCTCAATATTACTAATAATAGGAGTCACTATCAACCTCCTTTACTCCGGCCAATGGGT--AAT-----CTCAAAAATCTCAAACCCCATCGCATCCATCATGATAACCACTGCCCTAAC------AATAAAACTAGGCCTATCTCCATTCCACTTCTGAGTTCCCGAAGTAACACAGGGAATTACGCTCATATCAGGAATAATCCTACTAACATGACAAAAAATCGCACCTATATCCATCCTATATCAAATCTCTCCATCAATTAACACTA--ACCTTCTTAT----------ACTA-ATAGCCCTTACATCCGTTCTAGTAGGAG
792
+ i canFam2.chrM C 0 C 0
793
+ s dasNov1.scaffold_23239 7824 399 - 16977 TAGAAATAAACATATTCTCAATAATCCCCATTATCATAATAAAATCACACCCTCGATCAACAGAAGCCGCCACCAAATATTTCATGACACAAGCAACAGCATCTATACTTCTAATAATAGGCGTAATCATTAACTTATACTACTCAGGACAATGAAC--AAT-----TATAAATTCACTCAACCCAGTTACATCATATATAATAACCATCGCACTTGC------CATAAAACTAGGACTAGCCCCATTCCACTTCTGAGTGCCAGAGGTAACGCAAGGTACCCAACTAACATCAGGAATAATTCTTCTCACATGACAAAAACTAGCCCCAATAACAATCCTCTATCAAATCCACTCATCCCTAAACCTAA--ATCTAATACT----------AACC-CTAGCTATCCTTTCAATCCTAATCGGGG
794
+ i dasNov1.scaffold_23239 C 0 C 0
795
+ s loxAfr1.scaffold_36650 7009 399 + 16266 TAGAAATGAACATACTTACTATAATTCCCATTCTAATAAAGACAACCAATCCACGATCCACAGAAGCCGCCACAAAGTACTTTATAACCCAAGCCATAGCATCCATAATACTTATAATGGCTTTAACAATTAACCTAATATACTCAGGACAATGATC--AAT-----TACAAAAATAACCAACCCTGTAGCATCAAACATAGCATTAATAGCTTTAAT------AACCAAACTAGGCTCAGCCCCATTCCACTTCTGAGTTCCAGAAGTAACGCAAGGAGTCGAACTTACACCAGGGATGATCTTGTTAACCTGACAAAAATTAGCACCATTATCCCTACTATATCAAATGGCCACCTACACTAACACTA--ACCTAATCTA----------CCTT-TCTGGTCTACTTTCAATCCTAATTGGGG
796
+ i loxAfr1.scaffold_36650 C 0 C 0
797
+ s echTel1.scaffold_49882 4260 392 - 7170 TTGAAATGAATATATTTGCTATTATTCCTATGATCATAAAAAATAACTCCCCCCGAGCAATTGAGGCTGCAATAAAATATTTCCTCATTCAAGCATCCGCCTCCATACTACTACTTATAGCAGCCTCCCTTAATTTTATATACTCAGGTCAATGAAC--GTT-----AACAGAAATAAATGTCTCAATAGCATCCCTAATTATATTAATTGCTATACT------GATAAAATTAGGTATGGCACCATTTCACTTCTGAGTCCCAGAAGTTACTCAAGGTACTGTTTTATTGACCAGCCTCATTATTTTAACTTGACAAAAGCTAGCCCCCCTAGCTATTCTTTTCCAAATCGCCCCCTCAATTAATGTAG--ATATTATTCT----------TACA-ACAGCTATCCTATCAATTCTA-------
798
+ i echTel1.scaffold_49882 I 1469 n 67
799
+ s monDom4.chrUn 117155433 399 + 174229318 TAGAAATTAATACACTGGCCATTATTCCACTAATAACTTACCCCCACCACACACGAAACACAGAATCAGCCATCAAATATTTCATAACTCAAGCTACAGCTTCAATACTCCTCATATTCTCTATTATTTATAATGCATCCTTCACTAACCAATGGAC--CAT-----TAACCACTCACCCAACCAATGAGCCTCCTTACTAATAACCCTAGCCCTAGC------AATAAAACTAGGACTAGCCCCCTTTCACTTTTGAGTGCCAGAAGTTACACAAGGAATCCCACTATTATCTGGTATAATACTCCTAACATGACAAAAAATTGCTCCCATCTCAATCATATACCAAATTTCACCCTCACTTAATATAC--AAGTACTAAT----------AACC-TTAAGCATTTTATCCACACTATTAGGAG
800
+ i monDom4.chrUn C 0 C 0
801
+ s galGal2.chrM 5337 399 + 16775 TAGAGATCAACACCTTAGCCATCATCCCCCTCATCTCCAAGTCACACCACCCCCGAGCGATTGAAGCCACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTCGAGCATAACCAACGCCTGATCCACCGGACAATGAGA--CAT-----TACACAACTAAACCACCCGACATCATGCCTAATATTAACAATAGCAATCGC------AATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCCAATCACACTCCTCCTCCTAACATCACAGTCTCTTAATACCA--CCTTACTCAC----------CCTC-CTAGCAATCTCCTCCACCCTAATCGGAG
802
+ i galGal2.chrM C 0 C 0
803
+ s xenTro2.scaffold_18215 2927 399 + 3330 TAGAAATCAATACCCTAGCTATCATCCCACTGATAGCCCAAAACCACCACCCACGAGCAGTTGAAGCCTCAACCAAATACTTTCTAACTCAAGCTGCAGCCTCAGCTCTTCTCTTATTCTCAGCTTTAAATAATGCTTGGTTCACTGGAGAATGGTC--AAT-----TATAAACTTGACCAACTCAATCTCATGCACCACCATAACCATCGCCATCTG------CATGAAACTCGGACTAGCACCATTCCACTTCTGACTCCCAGAGGTCCTCCAAGGACTTAATTTAACAACAGGTCTTATCCTATCTACCTGACAAAAACTTGCCCCAATGGCCATCCTCTACCAGATCTCTCCATCAATAAACACCT--CCCTTCTTCT----------TTTA-ATTGGACTAACCTCAACATTAATCGGGG
804
+ i xenTro2.scaffold_18215 C 0 n 0
805
+ s tetNig1.chrUn_random 103513875 396 + 171761319 TAGAAATCAACACCCTCGCCATTATTCCCCTGATAGCCCAACACCACCACCCACGAGCAGTAGAGGCCACAACCAAATATTTCCTCACACAAGCCACCGCAGCAGCCATACTCCTATTCGCAAGCACAACCAACGCATGACTGACCGGACAGTGAGAACTGC-----AACAA--ATAACACACCCCCTTCCCTCCACATTAATTATTCTTGCCCTGGC------CCTAAAAATTGGACTAGCCCCACTACACACTTGACTCCCAGAAGTCCTCCAAGGATTAGACCTAACAACCGGACTCGTCCTCTCCACATGACAAAAGCTCGCACCCTTTGCCCTCCTCCTCCAACT---TCAACCAAACAACCCAA--CACTGCTCGT----------CATC-CTAGGAGTGCTATCAACACTAATCGGAG
806
+ i tetNig1.chrUn_random C 0 C 0
807
+ s danRer4.chrM 5089 399 + 16596 TAGAAATTAATACTTTAGCAATTGTCCCTCTAATAGCACAACAACACCACCCACGGGCAGTAGAAGCCACCACAAAATACTTCCTTATTCAAGCTGCTGCCGCAGCAATAATTCTATTCACAAGTACAACAAATGCCTGAATTTCAGGACAATGGGA--TGT-----TACAGGTATACCAGGCCCAGCCACCAGTACAGCAATAATGTTTGCATTGGC------TCTCAAAATCGGTCTAGCACCAATACATTTTTGATTACCAGAAGTTCTTCAAGGATTAGATCTGTTGACAGGACTAATTTTGTCAACCTGACAAAAACTTGCCCCAATAGCATT--------AA-----TTATCCAAACGACCCAAACCACTGACCCTCTTATTCTTACATCACTAGGAATTGCTTCCTCTCTCATTGGAG
808
+ i danRer4.chrM C 0 C 0
809
+
810
+ a score=552799.000000
811
+ s mm8.chrM 4409 135 + 16299 CATGAGGAGGACTTAACCAAACACAAATACGAAAAATTATAGCCTATTCATCAATTGCCCACATAGGATGAATATTAGCAATTCTTCCTTACAACCCATCCCTCACTCTACTCAACCTCATAATCTATATTATTC
812
+ s galGal2.chrM 5736 135 + 16775 GCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCCTATAACCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTA
813
+ i galGal2.chrM C 0 C 0
814
+ s monDom4.chrUn 117155832 135 + 174229318 GATGAGGAGGACTAAACCAAACACACCTACGAAAAATACTAGCATACTCATCAATCGCTCACATAGGGTGAATAACAATTATTATCATTATTTACCCTACACTCACTATACTAAATTTACTAATTTATTTTACTA
815
+ i monDom4.chrUn C 0 C 0
816
+ s echTel1.scaffold_181343 3775 135 + 18297 GCTGGGGCGGCCTAAACCAAACCCAACTACGAAAAATTATAGCGTACTCGTCAATTGCTCACATGGGCTGAATAGCTGCCGTAATAATTTATAATCCCACCCTAATATTACTTAACCTATTATTATACTTAATCT
817
+ i echTel1.scaffold_181343 M 371 C 0
818
+ s loxAfr1.scaffold_36650 7408 135 + 16266 GATGAGGAGGCCTAAATCAAACACAACTACGAAAAATCTTAGCCTATTCATCAATCTCCCATATAGGCTGAATACTCATTATCTTGCCCTTCAATCCCACCCTTACCCTACTAAACTTAACCATTTACATTATAC
819
+ i loxAfr1.scaffold_36650 C 0 C 0
820
+ s dasNov1.scaffold_23239 8223 135 - 16977 GATGAGGAGGACTAAACCAAACACAACTACGAAAAATTATAGCGTATTCATCCATTGCACACATAGGATGAATAACAGCAATCATTATATACAATACATCATTAATGATACTAAACCTAGTGATCTACCTAATAA
821
+ i dasNov1.scaffold_23239 C 0 C 0
822
+ s canFam2.chrM 4409 135 + 16727 GCTGAGGCGGACTAAATCAAACTCAACTACGAAAAATCATAGCATACTCCTCCATTGCCCACATAGGCTGAATAGCCGCTATCATTACTTATAACCCTACAATAATAGTTCTAAACTTAACTTTATATATTCTAA
823
+ i canFam2.chrM C 0 C 0
824
+ s bosTau2.chrM 4761 135 + 16338 GCTGAGGGGGACTAAACCAAACACAACTCCGAAAAATCATAGCCTACTCATCAATCGCTCATATAGGCTGAATAACAGCAGTACTACCATATAACCCCACCATAACATTGCTAAACTTAATTATCTATATCATTA
825
+ i bosTau2.chrM C 0 C 0
826
+ s rheMac2.chr5 34440408 87 - 182086969 GTTGAGGGGAACTTAACCAAA--CAACTGCGTCAAATCCTAGCCCACTCCTC----------------------------------------------AACATTACCACCCTAAACCTGATTATTTACCTTATCT
827
+ i rheMac2.chr5 C 0 C 0
828
+ s panTro2.chrM 4383 135 + 16554 GCTGAGGCGGACTAAACCAAACCCAACTACGCAAAATCCTAGCATACTCCTCAATCACCCACATAGGCTGAATAATAGCAGTCCTACCATATAACCCTAACATAACCATTCTTAATTTAACCATTTACATCATCC
829
+ i panTro2.chrM C 0 C 0
830
+ s hg18.chrM 4966 135 + 16571 GTTGAGGTGGATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCC
831
+ i hg18.chrM C 0 C 0
832
+ s oryCun1.scaffold_140182 4564 135 + 20791 GTTGAGGTGGACTAAACCAAACCCAACTACGAAAAATCCTAGCATACTCTTCAATCGCCCACATAGGATGAATAGCAGCTATCATCACATTTAACCCAAATACTATAGTCCTAAACCTAATTATCTATATTCTCA
833
+ i oryCun1.scaffold_140182 C 0 C 0
834
+ s rn4.chrM 4387 135 + 16300 CCTGAGGAGGACTTAACCAGACCCAAACACGAAAAATCATAGCATACTCATCAATTGCCCACATAGGATGAATAACAGCAATCCTTCCATACAACCCTAACTTAACCCTCCTAAACTTAACAATTTACATCCTAC
835
+ i rn4.chrM C 0 C 0
836
+ s tetNig1.chrUn_random 103514271 135 + 171761319 GCTGAGGAGGCCTAAACCAAACCCAGCTACGAAAAATCCTGGCATACTCATCCATCGCCCACCTAGGTTGAATAATCTTAATTCTGCAATTTTCACCAACCCTCACCCTCCTCACACTTATATTATACCTAATCA
837
+ i tetNig1.chrUn_random C 0 C 0
838
+ s danRer4.chrM 5488 135 + 16596 GGTGAAGCGGACTTAACCAAACCCAACTCCGAAAAATTCTAGCTTATTCATCAATTGCCCACATAGGGTGAATAATTATTGTTATCCAGTACGCTCCGCAACTTACTCTGATTGCTTTAGGAACATATATCTTTA
839
+ i danRer4.chrM C 0 C 0
840
+ e xenTro2.scaffold_18215 3326 0 + 3330 I
841
+
842
+ a score=401805.000000
843
+ s mm8.chrM 4544 198 + 16299 TTACAGCCCCTATATTCATAGCACTTATACTAAAT-AA-----CT-CTATAACCATC---AACTCAATCTCACTTCTATGAAATAAAACTCCAGCAATACTAACTATAATCTCACTGATATTACTATCCCTAGGAGGCCTTCCACCACTAA----------CAGGATTCTTACCAAAATGAATTATCATCACAGAACTTATAAAAAACAACTGTCTAA
844
+ s rn4.chrM 4522 198 + 16300 TTACTGTTCCAATATTCAATTACATCATAACAAAC-TC-----AG-CAACAACAATC---AACACACTCTCACTCGCATGAAATAAAACTCCCATAATCCTAACCATAGCATCCATCATCCTCCTATCACTAGGAGGACTCCCCCCTCTCA----------CAGGATTTTTACCAAAATGAGCAATTATCTCCGAGCTTCTAAAAAACAACTGCTCAA
845
+ i rn4.chrM C 0 C 0
846
+ s oryCun1.scaffold_140182 4699 198 + 20791 TGACAATCCCTATATTCATAATATTCATACAGCAC-TC-----AA-GTACAACCACT---CTATCACTATCACAAATGTGAAACAAAAATCCACTAATAGTATCTACTATCCTAATCACCCTAATATCCCTAGGAGGCCTGCCCCCACTCA----------CAGGTTTTATCCCTAAATGAATTATCATCCAGGAATTAACAAAAAATGGCAATATCA
847
+ i oryCun1.scaffold_140182 C 0 C 0
848
+ s hg18.chrM 5101 198 + 16571 TAACTACTACCGCATTCCTACTACTCAACTTAAAC-TC-----CA-GCACCACGACC---CTACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAA----------CCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCA
849
+ i hg18.chrM C 0 C 0
850
+ s panTro2.chrM 4518 198 + 16554 TAACTACTACCGCATTTCTGCTACTCAACTTAAAC-TC-----CA-GCACCACAACC---CTACTACTATCTCGCACCTGAAACAAGCTAACATGATTAACTCCCCTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTACCCCCACTAA----------CTGGCTTCTTACCCAAATGAGTTATCATCGAAGAATTCACAAAAAATAATAGCCTCA
851
+ i panTro2.chrM C 0 C 0
852
+ s rheMac2.chr5 34440495 198 - 182086969 TAACAACAACTGCATTTCCAGCACTCAACCTGAGT-AT-----AA-GCACCACAAAG---CTATCATTATTTCACACCTGAAACAAATGAACATGGTTGACACCTGTAATTCCACTAATTCTACTATCCTTAGGAGGTTTATCCCCATTAA----------CAGGGTTCCTGCCTTAATGAATCACCATTCAAGAATTTACAGAAAACAATAGCCTTA
853
+ i rheMac2.chr5 C 0 C 0
854
+ s bosTau2.chrM 4896 198 + 16338 TAACTTCCACCATATTTACCATATTTATAGCCAAT-TC-----CA-CCACCACTACC---CTGTCATTATCACACACATGAAATAAAACACCCATTATAACCGTCCTAATTCTTGCCACTCTCCTATCCATAGGAGGACTCCCTCCCCTAT----------CTGGGTTTATACCAAAATGAATAATCATCCAAGAGATAACAAAAAATAACAGCATCA
855
+ i bosTau2.chrM C 0 C 0
856
+ s canFam2.chrM 4544 198 + 16727 TAACACTATCTACCTTCATACTATTTATATTAAAC-TC-----AT-CCACCACGACC---CTATCTTTATCCCACATATGAAACAAATTTCCCCTAATCACTTCCATAATCTTAATCTTAATACTATCCCTAGGAGGACTACCCCCATTAT----------CTGGCTTCATCCCCAAATGAATAATTATTCAAGAATTAACGAAAAATAACATAATTA
857
+ i canFam2.chrM C 0 C 0
858
+ s dasNov1.scaffold_23239 8358 198 - 16977 TAACAATCACAATATTTGCCCTCTTTA---TTAAC-TC-----AA-CAACAACAACTACACTATCTCTATCTCTTACATGAAACAGTACACCAATCCTAACAACAATGCTCCTAACAACCCTACTATCACTAGGAGGCCTTCCCCCACTAT----------CAGGCTTCGCACCAAAATGAATAATCATCCAAGAGATGACAAAAAACAACATACTCC
859
+ i dasNov1.scaffold_23239 C 0 C 0
860
+ s loxAfr1.scaffold_36650 7543 198 + 16266 TAACACTGTCCATCTTTATAATTCTAA-CAAATAC-TT-----TCACAACTTCAATA---TCATCCCTAACTCTAATATGAAACAAAACACCTGCAATAACCATTATACTTATAACTACTTTACTATCTTTAGGAGGACTACCCCCACTAT----------CGGGATTCATACCCAAATGACTTATGATTCACGAACTAACCAAAAACAACAGTATTA
861
+ i loxAfr1.scaffold_36650 C 0 C 0
862
+ s echTel1.scaffold_181343 3910 198 + 18297 TCACATTTTCAGCATTCACCATCTTAATTAAATGC-TC-----TT-CAACCTCAACT---TCTATACTAACAATAACCTGAAATTCCTACCCATTAATAGTCTCTATCCTATTAATTATTCTTTTATCAATGGGAGGATTACCTCCATTAA----------CAGGTTTTGTACCTAAATGACTAATTATCTATGAACTGATTAAAAATACTAACATTG
863
+ i echTel1.scaffold_181343 C 0 C 0
864
+ s monDom4.chrUn 117155967 198 + 174229318 CAACCATTACCATATTCCTTATATTCAACCACTCA-TC-----AA-TAACCAAAATC---AACTCACTATCAACCCTATGAAACAAGTCTACCCCCATTACCATCATTATTATATTAACACTTCTATCCTTAGGGGGACTACCCCCATTAA----------CAGGTTTTATACCCAAATGATTAATTCTCCAAGAACTAATTTCATATAAAAATATAC
865
+ i monDom4.chrUn C 0 C 0
866
+ s galGal2.chrM 5871 198 + 16775 TGACCTCAACTGTATTCCTATCCCTAGCCCAAATC-AA-----AG-TCCTAAAACTG---TCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAA----------CCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCC
867
+ i galGal2.chrM C 0 C 0
868
+ s xenTro2.scaffold_96 2673143 176 - 2855184 TCACAGGCGAGACATCCCTGGCACATATACTAAATATT-----TC-TAACAATAATT------------------ACACAATATAA------------------TATGCACCTTCCAAACTTAGTGTCCCTGGGGTGCTGCCCTCTGCTAAAGCTTTATTTAAACATTCTCATTAAGAAAAATACTTTGTATAAAACTAACTGAGGGCATATTTTTAA
869
+ i xenTro2.scaffold_96 n 0 I 6355
870
+ s tetNig1.chrUn_random 103514406 198 + 171761319 TAACCTCCTCCGCCTTCCTCACATT-----CATCC-TCAACAAAA-CCACAACAATC---AATGCACTAGCCACATCCTGAGCCAAAACCCCCATTCTTACATCCCTCTTACCCCTTGTTCTCCTATCCCTCGGAGGCCTCCCTCCGCTAA----------CTGGCTTCATACCAAAATGACTAATCCTACAAGAACTAACTAAACACGATCTCGCCC
871
+ i tetNig1.chrUn_random C 0 C 0
872
+ s danRer4.chrM 5623 198 + 16596 TAACATCCGCGGCATTCCTTACTTTAAAAGTATTA-TC-----AG-CCACAAAAATT---AACACCCTAACAACGACCTGACCGAAAAGCCCAATCCTGGCAGCAATTGCTACTTTAGTTATATTATCACTGGGAGGACTTCCCCCACTGA----------CGGGATTCATACCAAAATGATTAATCCTACAAGAGTTAACGAAACAAGACCTACCAG
873
+ i danRer4.chrM C 0 C 0
874
+
875
+ a score=271987.000000
876
+ s mm8.chrM 4742 205 + 16299 TTATAGCAACACTCATAGCAATAATAGCTCTACTAAACCTATTCTTTTATACTCGCCTAATTTATTCCACTTCACTAACAATATTTCCAA---CCAACAATAACTCAAAAATAATA-ACTCACCAAACAAAAACTAAACCCAACCTA---ATATTTTCCACC--CTAGCTATCATAAGCACAATA---------ACCCTACCCCTAGC-------CCCCC-------AACTAATTAC
877
+ s rn4.chrM 4720 205 + 16300 CCCTATCAACACTAATAGCTATCATAGCCCTATTAAGCCTATTCTTCTATACTCGACTAATTTACTCTATATCCCTCACCACATTCCCAA---CCAACAACAACTCCAAAATAATC-TCCCACCACCAAAACCCAAAACATAATTTT---ATCCTCCCAACC--CTCACAGTATTAAGTACCCTA---------ACCCTACCGCTTTC-------CTCCC-------AACTAATCAC
878
+ i rn4.chrM C 0 C 0
879
+ s oryCun1.scaffold_140182 4897 219 + 20791 TTTTACCCACCGCTATAGCCATGCTTGCCCTCCTAAATCTATATTTTTATATACGCCTTATCTATTCTTCCTCACTAACTATATTCCCTA---CCACCAACAATCTAAAAATAAAA-TGACAATTTGAATCAACAAAACGCATACCC---CTCATCACTCCA--CTAATTATTTTATCAACCATA---------CTCCTCCCCCTCACACCAGCACTCTCAGTATTAAATTAGCTTT
880
+ i oryCun1.scaffold_140182 C 0 C 0
881
+ s hg18.chrM 5299 211 + 16571 TCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCA---TATCTAACAACGTAAAAATAAAA-TGACAGTTTGAACATACAAAACCCACCCCA---TTCCTCCCCACA--CTCATCGCCCTTACCACGCTA---------CTCCTACCTATCTC-------CCCTT-TTATACTAATAATCTT
882
+ i hg18.chrM C 0 C 0
883
+ s panTro2.chrM 4716 211 + 16554 TCATCCCCACCATCATAGCCATCATCACTCTCCTTAACCTCTATTTCTACCTACGCCTAATCTACTCCACCTCAATTACACTACTTCCCA---TATCTAATAACGTAAAAATAAAA-TGACAATTCGAACATACAAAACCCACCCCC---TTCCTCCCTACA--CTCATCACCCTTACCACACTG---------CTTCTACCCATCTC-------CCCCT-TCATACTAATAATCTT
884
+ i panTro2.chrM C 0 C 0
885
+ s rheMac2.chr5 34440693 211 - 182086969 TTACCCCAATCATTACAGCCATCATAACCCTACTCAACCTGTACTTTTACATACGCCTAGTCTATTCCTTCTCAGTAATACTATTCCCCT---CATCTAACAATATGAAAATAAAA-TGACAATTTGGAAACACAAAACCCATACTA---CTTTTCCCCCAG--CTTGTCATCTCTTCTACCCTC---------CTCTTATCCATCTC-------TCCAT-TAATATTAAATATAAC
886
+ i rheMac2.chr5 C 0 C 0
887
+ s bosTau2.chrM 5094 211 + 16338 TTCTACCCACTTTCATAGCAATCACAGCTCTACTAAACTTATATTTTTATATACGACTCACGTATTCTACCACACTAACAATATTTCCCT---CCACAAACAACATAAAAATAAAA-TGACAATTTCCCCTTATGAAAAAAATAACT---TTTCTACCAACA--ATAGTCGTATTATCTACCATA---------ATACTACCACTCAC-------GCCAA-TACTATCAGTGTTAGA
888
+ i bosTau2.chrM C 0 C 0
889
+ s canFam2.chrM 4742 211 + 16727 TTATTCCAACACTAATGGCTATCACCGCTCTACTTAACTTATATTTCTACCTGCGACTCACATATAGCACCGCACTTACCATATTTCCAT---CCACAAACAACATAAAAATAAAA-TGACAGTTCGAATACACAAAAAAGGCAACC---CTATTACCCCCC--TTAATTATTACCTCAACTATA---------CTACTCCCACTAAC-------ACCTA-TATTATCAGTCTTGGA
890
+ i canFam2.chrM C 0 C 0
891
+ s dasNov1.scaffold_23239 8556 211 - 16977 TACTACCAACAACAATAGCCATTATGGCACTACTGAACCTCTATTTCTACATACGACTTATCTACTCAACATCACTCACAATATTCCCAA---CGACCAATAACAACAAAATAAAA-TGAAAATACAAAACACAAAATTTTATCCCC---CTATCACCAACA--TTAATTACACTATCCACAATA---------CTCATCCCCCTCAC-------TCCAA-TAATATTAATCTTAAA
892
+ i dasNov1.scaffold_23239 C 0 C 0
893
+ s loxAfr1.scaffold_36650 7741 211 + 16266 TCATACCACTAACCATGGCCATTATAGCATTACTAAACATGTACTTCTACATACGACTAATCTACTACTCATCACTAACAATCCTACCAT---CTACAAATAATATGAAAATAACC-TGACGATTTACTAATACTAAACACACAATA---ACATTACCCACC--CTAATCACCCTATCTAACATA---------CTACTTCCCCTAAC-------CCCAA-TAATTTCAATGCTAGA
894
+ i loxAfr1.scaffold_36650 C 0 C 0
895
+ s echTel1.scaffold_181343 4108 211 + 18297 CCATAACACTAACAATATCTATCCTAGCCCTCTTGAATCTCTTCTTTTATTTACGCTTAATTTATGCATCCTCACTCACCCTGTTCCCGA---CAAGTAGTAATCTAAAATTCAAA-TGGAAA---ATCAATACCCCAAACAAAATATATTTTTTACCAACA--ATAGTCTCAATTTCACTACTT---------TTCCTTCCTGTCTC-------CCCAA-TAATTCTTATATTAAA
896
+ i echTel1.scaffold_181343 C 0 C 0
897
+ s monDom4.chrUn 117156165 211 + 174229318 CCCTAGCAACAGCACTAGCATTATCCGCACTACTAAACCTATTCTTTTATATACGAATTATTTATTTATCAACACTTACCATAGCACCGT---CCATTAATAACTCAAAAATACAA-TGAACTCTTCTACCCCCAAAAACACTCACA---CTCATTCCAACA--CTGACAATAATCTCATTACTA---------TTCTTACCTCTTAC-------CCCTA-TATTTATTGTACTCAC
898
+ i monDom4.chrUn C 0 C 0
899
+ s galGal2.chrM 6069 208 + 16775 CAATAGCCACAATCATCACAATACTATCACTCCTAAGCCTATTCTTCTACCTCCGACTTGCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGA-CGA--------ACTAACAAAACCCTAAACA---CCCCCACCGCCATTCTAACTGCGCTATCAACCACC---------CTATTGCCCCTTTC-------CCCCC-TAATTATTACCATACT
900
+ i galGal2.chrM C 0 C 0
901
+ s tetNig1.chrUn_random 103514604 205 + 171761319 CAACAGCCACCCTGGCAGCACTCAGCGCCCTACTAAGCCTCTACTTCTATCTTCGCCTCTCCTACGCCATAACCCTAACAATCGCCCCCA---ACAAC-TTAACAGGGACCCTCCCATGACGTACCCAAACAACCCAACCAAACATG---ATAACCGCCACC--ATAACAGCCTCTTCAATCCTT---------CTCCTCCCCATGAC-------CCCTG-GAATTCTTAC------
902
+ i tetNig1.chrUn_random C 0 N 0
903
+ s danRer4.chrM 5821 205 + 16596 CCACAGCTACTATCATGGCGCTTACCGCCCTCCTAAGCTTATTTTTTTACCTACGTCTATGTCATGCAATAACATTAACGACTTCACCAA---ACACTATCAATTCAGCCCCTCAC-TGACGGGTACAAACGACCCA---AAAC-------TCACTAC--CC--CTAACAATCTCTGTTACTGTTACTATAGGACTTTTACCACTGAC-------CCCAG-CCATCTTAAT------
904
+ i danRer4.chrM C 0 I 9
905
+ e xenTro2.scaffold_96 2673319 6355 - 2855184 I
906
+
907
+ a score=105153.000000
908
+ s mm8.chrM 4947 33 + 16299 CTAGAAG---------TTTAGGATATA-CT------AGTCCGCGAGC--CT
909
+ s rn4.chrM 4925 32 + 16300 ATAGAAG---------TTTAGGATATA-C-------AGTTCAAGAGC--CT
910
+ i rn4.chrM C 0 C 0
911
+ s oryCun1.scaffold_140182 5116 32 + 20791 AAAGGAG---------TTTAGGTTACA-C-------AGACCAAGAGC--CT
912
+ i oryCun1.scaffold_140182 C 0 C 0
913
+ s hg18.chrM 5510 34 + 16571 ATAGAAA---------TTTAGGTTAAA-TA-----CAGACCAAGAGC--CT
914
+ i hg18.chrM C 0 C 0
915
+ s panTro2.chrM 4927 34 + 16554 ATAGAAA---------TTTAGGTTAAG-CA-----CAGACCAAGAGC--CT
916
+ i panTro2.chrM C 0 C 0
917
+ s rheMac2.chr5 34440904 33 - 182086969 TTAGAAA---------TTTAGGTTAAA-TA------AGACCGAGGAC--CT
918
+ i rheMac2.chr5 C 0 C 0
919
+ s bosTau2.chrM 5305 32 + 16338 ATAGGAA---------TTTAGGTTAAA-C-------AGACCAAGAGC--CT
920
+ i bosTau2.chrM C 0 C 0
921
+ s canFam2.chrM 4953 33 + 16727 CTAGGAG---------TTTAGGTTAGACC-------AGACCAAGAGC--CT
922
+ i canFam2.chrM C 0 C 0
923
+ s dasNov1.scaffold_23239 8767 33 - 16977 CTAGGGA---------TTTAGGTTAGA-CA------AGACCAAGAGC--CT
924
+ i dasNov1.scaffold_23239 C 0 C 0
925
+ s loxAfr1.scaffold_36650 7952 32 + 16266 ATAGGAA---------TTTAGGTTAAA-C-------AGACCAAGAGC--CT
926
+ i loxAfr1.scaffold_36650 C 0 C 0
927
+ s echTel1.scaffold_181343 4319 33 + 18297 TTAGGGG---------GTTAGGTTAAATT-------AGACCAAGAGC--CT
928
+ i echTel1.scaffold_181343 C 0 C 0
929
+ s monDom4.chrUn 117156376 43 + 174229318 ATAAGAATTACAAGCTTTTATCTTGCA-T-------ACTTCGAACGCAAAT
930
+ i monDom4.chrUn C 0 C 0
931
+ s galGal2.chrM 6277 39 + 16775 ATAGAAA---------CTTAGGATTAA-CTGTCACCAAACCAAAGGC--CT
932
+ i galGal2.chrM C 0 C 0
933
+ s danRer4.chrM 6035 33 + 16596 ATAGAGA---------CTTAGGATAAC-CT------AGACCAAGAGC--CT
934
+ i danRer4.chrM I 9 C 0
935
+ e xenTro2.scaffold_96 2673319 6355 - 2855184 I
936
+
937
+ a score=2531764.000000
938
+ s mm8.chrM 4980 575 + 16299 TCAAAGCCCTAAGA--AAAC---ACA-CAAGTTTAACTTCTG--------A------------TAAGGACTGTAAGACTTCA-TC--CTACATCTATTGAA--TGCAAATCAAT---------TGCTTTA-------AT-TAAGCTAAGACCTC--------AA-CTAGATTGGCAGGAATTAAA--CCTACG-AAA---ATTTAGTTAACAGCTAAATAC-CCTA----T-TACTGGCTTCAATCTA-CTTCTACC--GCCG--A--A------AAAAAAA--AATGGCGGTA-----GAAGTCTTAGTA-GAGAT--TT-CTCTACACCTTCGAAT-----------------TTGCAATTCGACATGA-ATAT---CACCTT----AAGACCTCT-------------------GGTAAAAAGA--GGATTTAAACCTCTGTGTTTAGATTTACAGTCTAATGCT---T----ACTCAGCCATTTTA----------------------------------CC-----------TATG---TTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGGAACCCTCTATCTACTATTCGGAGCCTGAGCGGGAATAGTGGGTACTGCACTAAGTATTTTAATTCGAGCAGAATTAGGTCAACCAGGTGCACTTTTAGGAGATGACCAAATTTACAATGTTATCGTAACTGCCCATGCTTTTGTTATAATTTTCTTCATAGTAATACCAATAATAATTGGA
939
+ s rn4.chrM 4957 579 + 16300 TCAAAGCCCTTAGA--AAAC---AAA-CAAGTTTAACTTCTG--------A------------TAAGGACTGTAAGACTATA-TC--TTACATCTGTTAAA--TGCAAATCAAC---------TGCTTTA-------AT-TAAGCTAAATCCTC--------AA-CTAGATTGGAAGGAATCAAATTCCTACG-AAA---ATTTAGTTAACAGCTAAATAC-CCTA---CT-TACTGGCTTCAATCTA-CTTCTCCC--GCCT--A--T------CAGAAAA--GA-GGCGGGA-----GAAGCCTTAGTA-GAGGAGATT-CTCTACACCTTCGAAC-----------------TTGCAATTCGACATGA-TAAT---CACCTT----AAGGCTTTT------------------TGGTAAAAAGG--GGGCTCAA-CCCCTGTCTTTAGATTTACAGTCTAATGCT---T----ACTCAGCCATTTTA----------------------------------CC-----------TATG---TTCGTAAACCGTTGACTCTTTTCAACTAACCACAAAGATATCGGAACCCTCTACCTATTATTTGGAGCCTGAGCAGGAATAGTAGGGACAGCTTTGAGTATTCTAATTCGAGCTGAACTAGGACAGCCAGGCGCACTCCTAGGAGATGACCAAATCTATAATGTCATCGTCACAGCCCATGCATTCGTAATAATTTTCTTTATAGTAATACCTATAATAATTGGA
940
+ i rn4.chrM C 0 C 0
941
+ s oryCun1.scaffold_140182 5148 581 + 20791 TCAAAGCTCTAAGC--AAGT---AGATCATACTTAACCCCTG--------CT-----------TAAGGACTGCAAA--TTAA-CT--TTACATCTCCTGAA--TGCAAACCAGG---------TGCTTTA-------AT-TAAGCTAAATCCTC-----------CTAGATTGGTGGGCTCCAAC--CCCACG-AAG---CTTTAGTTAACAGCTAAATAC-CCTAG--TC-AACTGGCTTCAACCTA-CTTCTCCC--GCCGTAA--G------AAAAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GAGTT--GA-AGCTGCTTCTTTGAAT-----------------TTGCAATTCAATATGT-GAGTACCCACCTC----AGGGCTT---------------------GGTAAAAAGA--GGGCTTAA-CCTCTGTCTTTAGATTTACAGTCTAATACC---T----ACTCGGCCATTTTA----------------------------------CCCTT-----ACTTATG---TTCGTCAATCGTTGACTTTTCTCTACCAACCACAAAGACATCGGCACTCTTTATCTCCTATTTGGAGCTTGAGCTGGGATGGTGGGAACAGCCCTTAGCCTGCTAATTCGAGCAGAATTAGGTCAGCCAGGGACTCTACTCGGGGATGATCAAATCTATAATGTAATCGTCACCGCACATGCCTTTGTAATAATCTTCTTTATAGTCATACCTAT-ATAATTGGA
942
+ i oryCun1.scaffold_140182 C 0 C 0
943
+ s hg18.chrM 5544 588 + 16571 TCAAAGCCCTCAGT--AAGT---TGC-AATACTTAATTTCTGCAACAG--C------------TAAGGACTGCAAAACCCCA-CT--CTGCATCAACTGAA--CGCAAATCAGC---------CACTTTA-------AT-TAAGCTAAGCCCTT---------A-CTAGACCAATGGGACTTAAA--CCCACA-AAC---ACTTAGTTAACAGCTAAGCAC-CCTAA--TC-AACTGGCTTCAATCTA-CTTCTCCC--GCCG--C--C------GGGAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GGTTT--GA-AGCTGCTTCTTCGAAT-----------------TTGCAATTCAATATGA-AAAT---CACCTC----GGAGCT----------------------GGTAAAAAG---AGGCCTAA-CCCCTGTCTTTAGATTTACAGTCCAATGCT---T---CACTCAGCCATTTTA----------------------------------CCTCACCCCCACTGATG---TTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAATACCCATCATAATCGGA
944
+ i hg18.chrM C 0 C 0
945
+ s panTro2.chrM 4961 587 + 16554 TCAAAGCCCTCAGC--AAGT---TAC-AATACTTAATTTCTGCAACAA--C------------TAAGGACTGCAAAACCCCA-CT--CTGCATCAACTGAA--CGCAAATCAGC---------CACTTTA-------AT-TAAGCTAAGCCCTT---------A-CTAGATTAATGGGACTTAAA--CCCACA-AAC---ATTTAGTTAACAGCTAAACAC-CCTAA--TC-AACTGGCTTCAATCTA-CTTCTCCC--GCCG--C--A------AGAAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GGTTT--GA-AGCTGCTTCTTCGAAT-----------------TTGCAATTCAATATGA-AAAT---CACCTC----AGAGCT----------------------GGTAAAAAG---AGGCTTAA-CCCCTGTCTTTAGATTTACAGTCCAATGCT---T---CACTCAGCCATTTTA----------------------------------CCCCA-CCCTACTGATG---TTCACCGACCGCTGACTATTCTCTACAAACCACAAAGATATTGGAACACTATACCTACTATTCGGTGCATGAGCTGGAGTCCTGGGCACAGCCCTAAGTCTCCTTATTCGGGCTGAACTAGGCCAACCAGGCAACCTCCTAGGTAATGACCACATCTACAATGTCATCGTCACAGCCCATGCATTCGTAATAATCTTCTTCATAGTAATGCCTATTATAATCGGA
946
+ i panTro2.chrM C 0 C 0
947
+ s rheMac2.chr5 34440937 590 - 182086969 TCAAAGTCCTTAGT--AAGTA--AGT-TACTCTTAATTTCTGTAACAGATC------------TAAAGATGGCAAGATGCTA-TT--CTGCATCAATTGAA--CGCAAATCAAC---------CACTTTG-------AT-TAAGCTAAGCCCTT---------A-CTAGATTTATGGAATTCAAA--CCCACG-AATAAAATTTAGTTAACGGCTAAGCAC-CCTAA--TC-AACTGGCTTCAATCTA-CCCCCGCC--GCCG--T--T------GGGGGAG--AA-AGGCAGA-----GAAGACCCAGCA-GGATT--GA-AGCTTCTCCTTTGACT-----------------TTGCAATTCAACATGAGAAAT---CACCTC----AGGGCT----------------------GCTAAAAAGC--AGCCTTGA-CCTCTGTCTTTAGATTTACAGTCTAATGCT---T----ACTCAGCCATTTTA----------------------------------CCTTTTCCCCACTTATG---TTCATCAATCATTGATTGTTTTCAGCTAACCACGAAGATATCGGAACACTATACCTGCTAT--GGCGC---AGTGGAGATAGTAGGCACCGCCTTAAGCCTTCTAATTCCAGCAGAACTAGGCCAACCAGGAACTCTGCTAGGAGATGATCAGATCTACAATGTTATTGTTACCGCTCACACATTCGTTATAATTTTATTTATGATAACACTAATCATGATTGGG
948
+ i rheMac2.chr5 C 0 C 0
949
+ s bosTau2.chrM 5337 577 + 16338 TCAAAGCCCTAAGC--AAGTA--CAA-TTTACTTAATTCCTG--------A------------TAAGGATTGCAAGACTACA-CC--TTACATCAATTGAA--TGCAAATCAAC---------CACTTTA-------AT-TAAGCTAAATCCTC---------A-CTAGACTGGTGGGCTCCACC--CCCACG-AAA---CTTTAGTTAACAGCTAAACAC-CCTAG--CT-AACTGGCTTCAATCTA-CTTCTCCC--GCCG--CA-A------GAAAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GAATT--GA-AGCTGCTTCTCTGAAT-----------------TTGCAATTCAACGTGT-AAAT--TCACCAC----AGGGCTT---------------------GGTAAAAAGA--GGAGTCAAACCTCTATCTTTAGATTTACAGTCTAATGCT---T---TGCTCAGCCATTTTA----------------------------------CC-----------CATG---TTCATTAACCGCTGACTATTCTCAACCAACCATAAAGATATTGGTACCCTTTATCTACTATTTGGTGCTTGGGCCGGTATAGTAGGAACAGCTCTAAGCCTTCTAATTCGCGCTGAATTAGGCCAACCCGGAACTCTGCTCGGAGACGACCAAATCTACAACGTAGTTGTAACCGCACACGCATTTGTAATAATCTTCTTCATAGTAATACCAATCATAATTGGA
950
+ i bosTau2.chrM C 0 C 0
951
+ s canFam2.chrM 4986 590 + 16727 TCAAAGCTCTAAGC--AAGTG--CTA-CACACTTAACCCCTG--------ATCAAATCACCTCTAAGGGCTGCAAGAATCTA-TC--TTACATCAATTGAA--TGCAAATCAAA---------CACTTTA-------AT-TAAGCTAAGCCCTC---------C-CTAGATTGGTGAGCTTCTAC--CTCACG-AAA---TTTTAGTTAACAGCTAAATAC-CCTAG---T-AACTGGCTTCAATCTACCTTCTCCC--GCCG--CGTA------GAAAAAA--AA-GGCGGGA-----GAAGCCCCGGCG-GCGTC--TA-GGCTGCTTCTTTGAAT-----------------TTGCAATTCAATATGA-AAAT--TCACCAC----GGAGCTT---------------------GGCAAAAAGA--GGACTTAAACCCCTATCTTTAGATTTACAGTCTAATGCT---T---TTATCAGCCATTTTA----------------------------------CC-----------TATG---TTCATTAACCGATGACTGTTCTCCACTAATCACAAGGATATTGGTACTTTATACTTACTATTTGGAGCATGAGCCGGTATAGTAGGCACTGCTTTGAGCCTCCTCATCCGAGCCGAACTAGGTCAGCCCGGTACTTTACTAGGTGACGATCAAATTTATAATGTCATCGTAACCGCCCATGCTTTCGTAATAATCTTCTTCATAGTCATGCCCATCATAATTGGG
952
+ i canFam2.chrM C 0 C 0
953
+ s dasNov1.scaffold_23239 8800 579 - 16977 TCAAAGCCCTTAGC--AAGTA--AAA-ATTACTTAATCCCTG--------ACG----------TAAGGACTGCAAGATTTAG-CC--CCACATCTCCTGAA--CGCAAATCAGG---------CACTTTA-------AT-TAAGCTAAGTCCTC---------T-CTAGACTGGTGGGCTCCAAC--CCCACG-AAA---TTTTAGTTAACAGCTAAATAC-CATAA--TC-ACCTGGCTTCAATCTA----TTCCC--ACCT--C--A------AAAACAA--GC-CAAAGGAATCATAAAGCCCTGGCA-GAGTT--TACAGCTGCTTCTCTGAAC-----------------TTGCAATTCAA-ATAG-TATT--------C----AAGGCTTAT--------------TTAATGGTAAAAAAA--GGACTTCA-CCTTTGTCTTTAGATTTACAGTCTAATGCT---T----ACTCAGCCATTTTA----------------------------------CC-----------CATG---TTCATTACCCGTTGACTATTTTCAACAAACCACAAAGATATTGGAACTCTATATTTACTATTTGGCGCCTGGGCTGGAATAGTAGGCACCGCCCTAAGTCTACTAATTCGTGCCGAGCTTGGCCAACCAGGCACATTACTAGGAGACGATCAAATTTATAATGTAATTGTTACCGCCCATGCATTCATCATAATTTTCTTTATAGTAATACCAATCATGATCGGG
954
+ i dasNov1.scaffold_23239 C 0 C 0
955
+ s loxAfr1.scaffold_36650 7984 579 + 16266 TCAAAGCCCTAAGT--AAGTA--CAT-TATACTTAACTCCTG----AA--A------------TAAGGACTGCAAGATACTA-TC--TTACATCAACTGAA--TGCAAATCAGA---------CGCTTTA-------AC-TAAACTAAGCCCT----------T-CTAGATTGGAGGGCTTCAAT--CCCACGAAAT---TCTTAGTTAACAACTAAACAC-CCTAG--CT-AACTGGCTTCAATCTA-CTTCTCCC--GCCT--T--GAGGGAGGGGGAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GAATT--GA-AGCTGCTTCTTCGAAT-----------------TTGCAGTTCGACATGT-TTAC--AC-TTTC----AAGGCCT---------------------GGCAAAAA----GAGATTAC-TCTCTGTGGTTAGATTTACAGTCTAATGCC---T----ACTCAGCCATTTTA----------------------------------CC-----------TATG---TTTGCTAACCGCTGACTATATTCAACGAACCACAAAGATATCGGAACACTGTATCTATTATTTGGTGCTTGAGCTGGTATAGTAGGGACTGCTTTTAGTATCCTAATTCGGGCAGAACTAGGCCAACCAGGCTCTCTTCTTGGAGATGATCAAATCTACAATGTTATTGTCACAGCACACGCCTTCGTAATAATCTTCTTTATAGTCATGCCAATTATAATTGGA
956
+ i loxAfr1.scaffold_36650 C 0 C 0
957
+ s echTel1.scaffold_181343 4352 619 + 18297 TCAAAGCTCTAAGC--AAGTA--AAC-AATACTTACCCTCTG-----A--A------------TAAGGACTGCAAGACTGTACTC--TTACATCAATTGGA--CGCAAACCAAA---------CACTTTA-------ACTTAAGCTAAATCC-----------T-CTAGATTGATGGGGTTTAAA--CCCATG-AAC---TATTAGTTAACAGCTAATTAC-CCTAC--CTCAACTGGCTTCAATCTA-C-TCTCCC--GCCT--T--T-GAATAGAAAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GATTT--GA-AGCTGCTTCTTCGAAT-----------------TTGCAATTCAATATGA-ATAC--TCACTTC----AGAGCCT---------------------AGTAAAAAGGAGGAGCCTCC-CTCCTGTCTTTAGATTTACAGTCTAATGCCTATT----ACTCAGCCATTTTACTTTCATATATTAGAACTTCCTTCTATACCCTTTCT-----------TATG---TTCATAAACCGTTGACTATACTCTACTAACCATAAAGACATTGGAACCCTCTACTTATTATTCGGAGCTTGAGCTGGCACAGTAGGAACTGCTCTTAGCCTCCTAATCCGTGCTGAACTCGGACAGCCAGGAGCCCTACTAGGTGATGATCAAATCTATAACGTAATCGTAACTGCACACGCCTTCGTTATAATTTTCTTTATAGTTATACCCATTATGATTGGG
958
+ i echTel1.scaffold_181343 C 0 C 0
959
+ s monDom4.chrUn 117156419 635 + 174229318 CGAACGCTTTAATT--AAGC---TAA-ACCCTTAAACTACTA--------T------------TTAAACCTCGGTAGCTTTA-CTAACTAC-TTTTTTGAATTTGCAATTCAACGTATTAATATACTTCAAGATTAGAT-TATCCTAAAGGCTTAGGATAAAAT-CTAGACCGAAGG----------CCTTCA-AAG---CCTTAAGCAGGTGATAAATCCACCTAGCCTT-TACTAATTAC-ATCAA-GCTCTCCC--GCCT--TG-G------AGAAAAA--AA-GGCGGGA-----GAGCCCCGGGCA-GCCCT--ATTAATTGTTTCATAAACTAAACTGGTGGGTATTTATCCCACTCTATCTTAA-TTAA---CAGTTA----AGCGCCTGTCTTTCGGCCTCAGTTTAGTGGTAAAAAGA--GATGTTAT-TCTCTGTCTTTGAATTTACAGTTCAATGCC---T---AGCTCAGCCATTTTA----------------------------------CC-----------TATG---TTCATTAATCGTTGACTCTTCTCAACTAACCATAAAGATATTGGTACTTTATATTTATTATTTGGTGCTTGAGCAGGAATAGTTGGAACCGCACTAAGCCTCCTAATTCGAGCAGAATTAGGCCAACCAGGGACTCTAATTGGTGATGATCAAATTTATAACGTAATCGTAACTGCCCACGCTTTCGTTATAATTTTCTTCATAGTAATACCTATCATGATTGGA
960
+ i monDom4.chrUn C 0 C 0
961
+ s galGal2.chrM 6316 559 + 16775 TCAAAGCCTTAAAT--AAGAGTTAAA-CTCTCTTAGTTTCTG-CCCAA--C------------TAAGACCAACAGGACATTA-AC--CTGTATCTCCTGAA--TGCAAATCAGA---------CGCTTTA-------AT-TAAGCTAAGGCCTC-------TAC-CTAGACAGATGGGCTTCGAT--CCCATA-CAA---TTTTAGTTAACAGCTAAATGC-CAACA--CC-AATTGGCTTCTGCCTA-----------------C--A------------------------------GA--CCCCGGCA-CACTT--TA-GTGTACATCAACGAGT-----------------TTGCAACTCATTATGA-ACTT---CACTAC----AGAGTC----------------------GATAAGAAGA--GGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCT---TCAACACTCAGCCATCTTA----------------------------------CC-----------TGTGACCTTCATCAACCGATGATTATTCTCAACCAACCACAAAGACATTGGCACTCTTTACCTAATTTTCGGCACATGGGCGGGCATAGCCGGCACAGCACTTAGCCTTCTAATTCGCGCAGAACTAGGACAGCCCGGAACTCTCTTAGGAGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTCGTCATAATCTTCTTTATAGTTATACCCATCATGATCGGT
962
+ i galGal2.chrM C 0 C 0
963
+ s tetNig1.chrUn_random 161619026 580 + 171761319 TCAAAGCCCTCAGCGGGAGTG--AAA-ATCTCCCAGTCCCTG--------A------------TAAGACTTGCGGGACACTA-CC--CCACATCTCCTGCA--TGCAAAACAGA---------CACTTTA-------AT-TAAGCTAAAGCCTT---------ACCTAGACAGGCAGGCCTCGAT--CCTACA-AAC---TCTTAGTTAACAGCTAAGCGC-TCAAA--CC-AGCGAGCATCTATCTA-CCTTTCCCCGCCTG--T--C------AAAACAA--AA-GGCGGGG-----AAAGCCCCGGCA-GACGT--CA-ATCTGCTTCTTTAGAT-----------------TTGCAATCTAACATGT---AA---CACCCC----AGGGCTT---------------------GGTAGAAAGA--GGAATTTAACCTCCGTACGTGGGGCTACAATCCACCGCT---T-AACACTCAGCCATCCTA----------------------------------CC-----------TGTG---GCAATCACACGCTGATTTTTCTCAACCAACCATAAAGACATCGGCACCCTCTACCTAGTATTTGGTGCCTGAGCCGGAATAGTGGGAACGGCCCTTAGCCTCCTCATCCGAGCTGAACTTAGCCAACCAGGCGCACTCTTGGGTGATGACCAGATTTATAATGTAATCGTCACAGCCCATGCATTTGTAATAATTTTCTTTATAGTAATGCCAATCATGATTGAA
964
+ i tetNig1.chrUn_random N 0 N 0
965
+ s danRer4.chrM 6068 584 + 16596 TCAAAGCTCTCAGTAGAAGTG--AAA-ATCTTCTAGTCTCTG--------A------------TAGGACTTAC-AGACGTTA-CT--CCGCATCTTCTAAA--TGCAAATCAGA---------TATTTTA-------AT-TAAACTAAAGCCCT---------A-CTAGATGGGAAGGCCTCGAT--CCTACA-AAA---TCTTAGTTAACAGCTAAGCGC-CCAAG--CC-AGCGAGCATCCATCTA-CTTTTCCC--GCCG--T--T------GAACCCGGTAA-GGCGGGA-----AAAGCCCCGGCAGGAGGT--TT-ACCTGCGTCTTCAGAT-----------------TTGCAATCTGATATGT---AT---CATCACCACGAGGCCAT---------------------GGTAGAAAAA--GGACTCAAACCTCTGTCCGCGGAGCTACAATCCGCCGCC---TAAACACTCGGCCACCCTA----------------------------------CC-----------TGTG---ACAATCACACGTTGATTTTTCTCAACTAATCATAAAGACATTGGCACCCTGTATCTAGTATTTGGTGCTTGAGCCGGAATAGTAGGGACCGCATTAAGCCTCTTAATCCGAGCTGAACTTAGCCAACCAGGAGCACTTCTTGGTGATGATCAAATCTATAATGTTATTGTTACTGCCCATGCTTTTGTAATAATTTTCTTTATAGTAATACCCATTCTTATTGGG
966
+ i danRer4.chrM C 0 C 0
967
+ e xenTro2.scaffold_96 2673319 6355 - 2855184 I
968
+
969
+ a score=799335.000000
970
+ s mm8.chrM 5555 131 + 16299 GGCTTTGGAAACTGACTTGTCCCACTAATAATCGGAGCCCCAGATATAGCATTCCCACGAATAAATAATATAAGTTTTTGACTCCTACCACCATCATTTCTCCTTCTCCTAGCATCATCAATAGTAGAAGC
971
+ s rn4.chrM 5536 131 + 16300 GGCTTCGGAAACTGACTTGTACCACTAATAATTGGAGCCCCTGATATAGCATTCCCACGAATAAATAACATAAGCTTTTGACTGCTTCCTCCATCATTTCTACTCCTTTTAGCATCCTCCATAGTAGAAGC
972
+ i rn4.chrM C 0 C 0
973
+ s oryCun1.scaffold_140182 5729 131 + 20791 GGCTTCGGGAACTGGCTTGTCCCCCTGATAATTGGGGCTCCTGACATAGCCTTCCCCCGAATAAATAATATGAGCTTCTGACTTCTCCCCCCTTCATTCCTTCTTCTACTAGCCTCCTCAATAGTAGAAGC
974
+ i oryCun1.scaffold_140182 C 0 M 264
975
+ s hg18.chrM 6132 131 + 16571 GGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCCCCGATATGGCGTTTCCCCGCATAAACAACATAAGCTTCTGACTCTTACCTCCCTCTCTCCTACTCCTGCTCGCATCTGCTATAGTGGAGGC
976
+ i hg18.chrM C 0 C 0
977
+ s panTro2.chrM 5548 131 + 16554 GGCTTTGGCAACTGGCTAGTTCCCTTGATAATTGGTGCCCCCGACATGGCATTCCCCCGCATAAACAACATAAGCTTCTGGCTCCTGCCCCCTTCTCTCCTACTTCTACTTGCATCTGCCATAGTAGAAGC
978
+ i panTro2.chrM C 0 C 0
979
+ s rheMac2.chr5 34441527 131 - 182086969 GTTTTCGGCAACTGGCTAGTCCCTCTGACCATTGGTTGACTGGACATGGCATCCCCCTGAATAAATAATATGATTTTCTGACTTCTCCCCCTATCTTTTCTACTCCTACTTGCGTCTTCAATAGTAGAAGC
980
+ i rheMac2.chr5 C 0 C 0
981
+ s bosTau2.chrM 5914 131 + 16338 GGATTCGGTAACTGACTTGTTCCCCTAATAATTGGTGCTCCCGATATAGCATTTCCCCGAATAAATAATATAAGCTTCTGACTCCTCCCTCCCTCATTCCTACTACTCCTCGCATCCTCTATAGTTGAAGC
982
+ i bosTau2.chrM C 0 C 0
983
+ s canFam2.chrM 5576 131 + 16727 GGCTTTGGAAACTGACTAGTGCCGTTAATAATTGGTGCTCCGGACATGGCATTCCCCCGAATAAATAACATGAGCTTCTGACTCCTTCCTCCATCCTTTCTTCTACTATTAGCATCTTCTATGGTAGAAGC
984
+ i canFam2.chrM C 0 C 0
985
+ s dasNov1.scaffold_23239 9379 131 - 16977 GGCTTCGGAAACTGATTAGTCCCATTAATAATTGGCGCGCCCGATATAGCCTTCCCACGAATAAACAACATAAGTTTCTGACTATTACCCCCTTCATTCCTACTCCTACTAGCCTCCTCTATAGTAGAAGC
986
+ i dasNov1.scaffold_23239 C 0 C 0
987
+ s loxAfr1.scaffold_36650 8563 131 + 16266 GGCTTTGGAAACTGGTTAATTCCACTTATAATTGGAGCACCTGATATAGCTTTTCCTCGAATAAACAATATGAGTTTTTGACTACTGCCTCCATCTTTCCTACTACTTTTAGCATCCTCTATAGTAGAAGC
988
+ i loxAfr1.scaffold_36650 C 0 C 0
989
+ s echTel1.scaffold_181343 4971 131 + 18297 GGATTTGGTAACTGACTGATCCCATTAATGATTGGTGCCCCTGACATAGCTTTCCCCCGAATAAATAACATAAGTTTCTGGCTCCTTCCCCCCTCTTTTCTTCTTCTGTTAGCTTCATCTATAGTTGAAGC
990
+ i echTel1.scaffold_181343 C 0 C 0
991
+ s monDom4.chrUn 117157054 131 + 174229318 GGTTTTGGTAACTGACTAGTACCACTAATAATTGGAGCACCAGATATAGCATTTCCCCGAATAAATAATATAAGTTTCTGACTACTACCACCCTCATTCCTTCTTTTACTAGCATCATCCACAGTTGAAGC
992
+ i monDom4.chrUn C 0 C 0
993
+ s galGal2.chrM 6875 131 + 16775 GGCTTCGGAAACTGACTAGTCCCACTTATAATCGGTGCCCCAGACATAGCATTCCCCCGCATAAATAACATAAGCTTCTGACTCCTCCCTCCCTCCTTCCTTCTCCTACTAGCCTCATCTACCGTAGAAGC
994
+ i galGal2.chrM C 0 C 0
995
+ s tetNig1.chrUn_random 417498 131 - 171761319 GGTTTTGGTAATTGGTTTGTTCCTTTGATGTTGGGAGCTCCAGATATAGCATTTCCAAGGTTGAACAACATTAGTTTTTGGCTTTTGCCACCTTCTTTGCTTCTATTGGTAAGTTCTTCTTTGGTAGAGGC
996
+ i tetNig1.chrUn_random N 0 C 0
997
+ s danRer4.chrM 6652 131 + 16596 GGATTTGGAAACTGACTTGTGCCACTAATGATTGGGGCCCCCGATATGGCATTTCCCCGAATAAATAATATAAGCTTCTGACTTCTTCCACCCTCATTTCTTCTTCTATTAGCTTCTTCTGGAGTTGAAGC
998
+ i danRer4.chrM C 0 C 0
999
+ e xenTro2.scaffold_96 2673319 6355 - 2855184 I
1000
+