bio-maf 0.2.0-java → 0.3.0-java
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/.gitignore +1 -0
- data/Gemfile +3 -1
- data/README.md +98 -29
- data/Rakefile +6 -2
- data/bin/maf_tile +59 -35
- data/bio-maf.gemspec +4 -3
- data/features/block-joining.feature +32 -0
- data/features/dir-access.feature +46 -0
- data/features/maf-indexing.feature +23 -0
- data/features/maf-to-fasta.feature +9 -0
- data/features/slice.feature +54 -0
- data/features/step_definitions/dir-access_steps.rb +15 -0
- data/features/step_definitions/file_steps.rb +7 -0
- data/features/step_definitions/gap_removal_steps.rb +4 -0
- data/features/step_definitions/index_steps.rb +3 -3
- data/features/step_definitions/output_steps.rb +9 -1
- data/features/step_definitions/parse_steps.rb +13 -2
- data/features/step_definitions/query_steps.rb +7 -6
- data/features/step_definitions/slice_steps.rb +15 -0
- data/features/step_definitions/{gap-filling_steps.rb → tiling_steps.rb} +0 -0
- data/features/support/aruba.rb +1 -0
- data/features/support/env.rb +3 -1
- data/features/{gap-filling.feature → tiling.feature} +85 -0
- data/lib/bio/maf/index.rb +223 -11
- data/lib/bio/maf/maf.rb +209 -0
- data/lib/bio/maf/parser.rb +190 -111
- data/lib/bio/maf/tiler.rb +33 -6
- data/man/maf_index.1 +1 -1
- data/man/maf_tile.1 +7 -7
- data/man/maf_tile.1.ronn +21 -13
- data/man/maf_to_fasta.1 +1 -1
- data/spec/bio/maf/index_spec.rb +99 -0
- data/spec/bio/maf/maf_spec.rb +184 -0
- data/spec/bio/maf/parser_spec.rb +75 -115
- data/spec/bio/maf/tiler_spec.rb +44 -0
- data/test/data/chr22_ieq2.maf +11 -0
- data/test/data/gap-1.kct +0 -0
- data/test/data/gap-1.maf +9 -0
- data/test/data/gap-filled1.fa +6 -0
- data/test/data/gap-sp1.fa.gz +0 -0
- data/test/data/mm8_chr7_tiny_slice1.maf +9 -0
- data/test/data/mm8_chr7_tiny_slice2.maf +10 -0
- data/test/data/mm8_chr7_tiny_slice3.maf +10 -0
- data/test/data/mm8_chrM_tiny.kct +0 -0
- data/test/data/mm8_chrM_tiny.maf +1000 -0
- metadata +65 -16
data/spec/bio/maf/parser_spec.rb
CHANGED
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@@ -3,121 +3,6 @@ require 'spec_helper'
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3
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module Bio
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module MAF
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describe Header do
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before(:each) do
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@p = Parser.new(TestData + 't1.maf')
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end
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-
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it "provides version information" do
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@p.header.version.should == '1'
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end
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it "provides the scoring scheme" do
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@p.header.scoring.should == 'humor.v4'
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end
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it "provides alignment parameters" do
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@p.header.alignment_params.should =~ /humor.v4 R=30/
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end
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it "presents multiline parameters correctly" do
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@p.header.alignment_params.should == "humor.v4 R=30 M=10 /cluster/data/hg15/bed/blastz.mm3/axtNet300/chr1.maf /cluster/data/hg15/bed/blastz.rn3/axtNet300/chr1.maf"
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end
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it "provides arbitrary parameters"
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end
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describe Block do
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describe "#find_gaps" do
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it "finds a single 14-base gap" do
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p = Parser.new(TestData + 'mm8_chr7_tiny.maf')
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p.sequence_filter = { :only_species => %w(mm8 rn4 hg18 canFam2 loxAfr1) }
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block = p.parse_block
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gaps = block.find_gaps
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gaps.size.should == 1
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gaps[0][0].should == 34
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gaps[0][1].should == 14
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end
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end
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describe "#remove_gaps!" do
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it "removes a single 14-base gap" do
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p = Parser.new(TestData + 'mm8_chr7_tiny.maf')
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p.sequence_filter = { :only_species => %w(mm8 rn4 hg18 canFam2 loxAfr1) }
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block = p.parse_block
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block.sequences.size.should == 5
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block.text_size.should == 54
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block.remove_gaps!
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block.text_size.should == 40
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end
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end
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end
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-
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describe Sequence do
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before(:each) do
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@parser = DummyParser.new
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end
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describe "#gapped?" do
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it "is false for sequences with no gaps" do
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line = "s human_unc 9077 8 + 10998 ACAGTATT"
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s = @parser.parse_seq_line(line, nil)
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s.gapped?.should be_false
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end
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it "is true for sequences with gaps" do
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line = "s human_unc 9077 8 + 10998 AC-AGTATT"
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s = @parser.parse_seq_line(line, nil)
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s.gapped?.should be_true
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end
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end
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-
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describe "#text_range" do
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it "returns 0...text.size for a spanning interval" do
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line = "s human_unc 9077 8 + 10998 ACAGTATT"
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s = @parser.parse_seq_line(line, nil)
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range = s.text_range(9077...(9077 + 8))
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range.should == (0...(s.text.size))
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end
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it "returns 0...text.size for a gapped spanning interval" do
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line = "s human_unc 9077 8 + 10998 AC--AGTATT"
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s = @parser.parse_seq_line(line, nil)
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range = s.text_range(9077...(9077 + 8))
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range.should == (0...(s.text.size))
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end
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it "handles a leading subset" do
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line = "s human_unc 9077 8 + 10998 ACAGTATT"
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s = @parser.parse_seq_line(line, nil)
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range = s.text_range(9077...(9077 + 2))
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range.should == (0...2)
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end
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it "handles a trailing subset" do
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line = "s human_unc 9077 8 + 10998 ACAGTATT"
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s = @parser.parse_seq_line(line, nil)
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range = s.text_range(9079...9085)
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range.should == (2...8)
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end
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it "handles a gap in the middle" do
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line = "s human_unc 9077 8 + 10998 AC--AGTATT"
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s = @parser.parse_seq_line(line, nil)
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range = s.text_range(9078...(9077 + 8))
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range.should == (1...(s.text.size))
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end
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it "errors on a range starting before" do
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expect {
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line = "s human_unc 9077 8 + 10998 ACAGTATT"
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s = @parser.parse_seq_line(line, nil)
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range = s.text_range(9076...(9077 + 8))
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}.to raise_error
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end
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it "errors on a range ending after" do
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expect {
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line = "s human_unc 9077 8 + 10998 ACAGTATT"
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s = @parser.parse_seq_line(line, nil)
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range = s.text_range(9076...(9077 + 9))
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}.to raise_error
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end
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end
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end
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describe ParseContext do
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it "tracks the last block position"
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end
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@@ -247,6 +132,20 @@ module Bio
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blocks = @p.fetch_blocks(fl).to_a
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blocks.size.should == 2
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blocks.collect {|b| b.offset}.should == [16, 3011]
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end
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it "does not return empty blocks" do
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fl = [[16, 1087]]
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@p.sequence_filter = { :only_species => %w(jabberwocky unicorn) }
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blocks = @p.fetch_blocks(fl).to_a
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blocks.size.should == 0
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end
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it "takes a block argument" do
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fl = [[16, 1087], [1103, 1908], [3011, 2027]]
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n = 0
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@p.fetch_blocks(fl) do |block|
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n += 1
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end
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n.should == 3
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end
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end
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context "with 4K chunk size" do
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@@ -287,6 +186,13 @@ module Bio
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end
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end
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describe "#each_block" do
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it "returns an Enumerator when called without a block" do
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p = described_class.new(TestData + 'mm8_chr7_tiny.maf')
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p.each_block.count.should == 8
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end
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end
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describe "sequence_filter" do
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before(:each) do
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@p = described_class.new(TestData + 'mm8_mod_a.maf')
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@@ -309,6 +215,10 @@ module Bio
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}
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@p.parse_block.filtered?.should be_false
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end
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it "does not return empty blocks" do
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@p.sequence_filter = { :only_species => %w(jabberwocky unicorn) }
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@p.parse_blocks.count.should == 0
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end
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end
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context "at end of file" do
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@@ -450,6 +360,56 @@ module Bio
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end
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end
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describe ":join_blocks" do
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it "returns joined blocks" do
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p = Parser.new(TestData + 'mm8_chr7_tiny.maf',
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:join_blocks => true)
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p.sequence_filter = {
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:only_species => %w(mm8 rn4 oryCun1 hg18 panTro2 rheMac2 canFam2 loxAfr1 echTel1)
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}
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idx = KyotoIndex.open(TestData + "mm8_chr7_tiny.kct")
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l = idx.find([GenomicInterval.zero_based('mm8.chr7',
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80082334,
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373
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80082471)],
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p).to_a
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l.size.should == 1
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l.first.text_size.should == 210
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end
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end
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describe ":remove_gaps" do
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it "removes gaps from #parse_blocks" do
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p = Parser.new(TestData + 'mm8_chr7_tiny.maf',
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:remove_gaps => true)
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384
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p.sequence_filter = { :only_species => %w(mm8 rn4) }
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b = p.parse_blocks.first
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b.text_size.should == 34
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end
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388
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it "removes gaps from #parse_block" do
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389
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p = Parser.new(TestData + 'mm8_chr7_tiny.maf',
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:remove_gaps => true)
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391
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p.sequence_filter = { :only_species => %w(mm8 rn4) }
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392
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b = p.parse_block
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393
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b.text_size.should == 34
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end
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395
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end
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396
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+
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describe ":as_bio_alignment" do
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it "returns bio-alignment objects" do
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p = Parser.new(TestData + 'mm8_chr7_tiny.maf',
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:as_bio_alignment => true)
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idx = KyotoIndex.open(TestData + "mm8_chr7_tiny.kct")
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l = idx.find([GenomicInterval.zero_based('mm8.chr7',
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403
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80082334,
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404
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80082471)],
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p).to_a
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l.size.should == 2
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407
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l.first[0][0].should == 'G'
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408
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l.first[0].id.should == 'mm8.chr7'
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end
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end
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453
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end
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end
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data/spec/bio/maf/tiler_spec.rb
CHANGED
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@@ -4,6 +4,47 @@ module Bio::MAF
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4
4
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5
5
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describe Tiler do
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6
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7
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describe "#reference=" do
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8
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it "takes a FASTARangeReader" do
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9
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t = Tiler.new
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10
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t.reference = FASTARangeReader.new((TestData + 'gap-sp1.fa').to_s)
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t.reference.read_interval(0, 3).should == 'CCA'
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end
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it "takes an open file" do
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(TestData + 'gap-sp1.fa').open do |fh|
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t = Tiler.new
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t.reference = fh
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t.reference.read_interval(0, 3).should == 'CCA'
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end
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end
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it "takes a FASTA literal" do
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ref = File.read(TestData + 'gap-sp1.fa')
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t = Tiler.new
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t.reference = ref
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t.reference.read_interval(0, 3).should == 'CCA'
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end
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it "takes a Pathname" do
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t = Tiler.new
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t.reference = TestData + 'gap-sp1.fa'
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t.reference.read_interval(0, 3).should == 'CCA'
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30
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end
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31
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it "takes a path string" do
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t = Tiler.new
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t.reference = (TestData + 'gap-sp1.fa').to_s
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t.reference.read_interval(0, 3).should == 'CCA'
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end
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it "takes a gzipped Pathname" do
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t = Tiler.new
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t.reference = TestData + 'gap-sp1.fa.gz'
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t.reference.read_interval(0, 3).should == 'CCA'
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40
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+
end
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41
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it "takes a gzipped path string" do
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42
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t = Tiler.new
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43
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t.reference = (TestData + 'gap-sp1.fa.gz').to_s
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44
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t.reference.read_interval(0, 3).should == 'CCA'
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45
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end
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46
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end
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47
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+
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7
48
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describe "#runs" do
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8
49
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it "returns a uniform run properly" do
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9
50
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a = Array.new(10, 'a')
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@@ -57,6 +98,9 @@ module Bio::MAF
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57
98
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it "returns the entire sequence" do
|
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58
99
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check_range(0, 50)
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59
100
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end
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101
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it "returns a sub-line fragment" do
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102
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+
check_range(0, 4)
|
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103
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+
end
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60
104
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it "returns an entire line" do
|
|
61
105
|
check_range(10, 20)
|
|
62
106
|
end
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
##maf version=1 scoring=autoMZ.v1
|
|
2
|
+
a score=13668.000000
|
|
3
|
+
s hg19.chr22 16054189 54 + 51304566 TCTGTGAAACCCACAGTAATGGGGCTGACATCCTCTGCCCTATGCAAGAGAGGT
|
|
4
|
+
s ponAbe2.chrUn 13354616 54 + 72422247 TCTTTCAAACCCACAGTAATGGGGCTGACATCCTCTACCATATGCAAGAGAGGT
|
|
5
|
+
q ponAbe2.chrUn 855489998999999899968899889893997969799999879999999989
|
|
6
|
+
i ponAbe2.chrUn N 0 C 0
|
|
7
|
+
s panTro2.chrUn 7684562 54 + 58616431 TCTGTGAAACCCACAGTAATGGGGCTGACATCCTCTGCCCTATGCAAGAGAGAT
|
|
8
|
+
q panTro2.chrUn 999999999999999999999999999999999999999999999999999999
|
|
9
|
+
i panTro2.chrUn C 0 I 146
|
|
10
|
+
e turTru1.scaffold_109008 25049 1601 + 50103 I
|
|
11
|
+
|
data/test/data/gap-1.kct
ADDED
|
Binary file
|
data/test/data/gap-1.maf
ADDED
|
Binary file
|
|
@@ -0,0 +1,9 @@
|
|
|
1
|
+
##maf version=1
|
|
2
|
+
a score=10542.0
|
|
3
|
+
s mm8.chr7 80082350 18 + 145134094 TGGAGGGCGGTCCCAGCA
|
|
4
|
+
s rn4.chr1 136011801 18 + 267910886 CGGAGGGCGGTCCCAGCA
|
|
5
|
+
|
|
6
|
+
a score=-33148.0
|
|
7
|
+
s mm8.chr7 80082368 12 + 145134094 TGAGAGGGCATG
|
|
8
|
+
s rn4.chr1 136011819 12 + 267910886 TGAGAGGGCATG
|
|
9
|
+
|
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
##maf version=1
|
|
2
|
+
a score=30120.0
|
|
3
|
+
s mm8.chr7 80082718 10 + 145134094 CAAAGGCAGC
|
|
4
|
+
s rn4.chr1 136012152 10 + 267910886 CAGAGGCAGC
|
|
5
|
+
s hg18.chr15 88557993 10 + 100338915 CTGAACCAGC
|
|
6
|
+
s panTro2.chr15 87960238 10 + 100063422 CTGAACCAGC
|
|
7
|
+
s rheMac2.chr7 69865091 10 + 169801366 CTGAACCAGC
|
|
8
|
+
s canFam2.chr3 56030954 10 + 94715083 TTGACCCAGC
|
|
9
|
+
s echTel1.scaffold_304651 922 10 - 10007 TCCATCCCAC
|
|
10
|
+
|
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
##maf version=1
|
|
2
|
+
a score=30120.0
|
|
3
|
+
s mm8.chr7 80082757 10 + 145134094 AAGAGATAAA
|
|
4
|
+
s rn4.chr1 136012191 10 + 267910886 AAGAGATAAA
|
|
5
|
+
s hg18.chr15 88558033 10 + 100338915 AAAAGATAAG
|
|
6
|
+
s panTro2.chr15 87960278 10 + 100063422 AAAAGATAAG
|
|
7
|
+
s rheMac2.chr7 69865131 10 + 169801366 AAAAGATGAG
|
|
8
|
+
s canFam2.chr3 56030983 6 + 94715083 ACAA----AG
|
|
9
|
+
s echTel1.scaffold_304651 962 10 - 10007 AAAAGATAAA
|
|
10
|
+
|
|
Binary file
|
|
@@ -0,0 +1,1000 @@
|
|
|
1
|
+
##maf version=1 scoring=autoMZ.v1
|
|
2
|
+
a score=360695.000000
|
|
3
|
+
s mm8.chrM 0 81 + 16299 GTTAATGTAGCTTAA--TAACAAAGCAAAGCACTGAAAATGCTTAGATG-GATAATTG--TA-TCCCATAAAC-ACAAAGGTTTGGTC
|
|
4
|
+
s galGal2.chrM 1234 75 + 16775 -------TAGCTTAAC-CCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACT--AT-ACCTGTGGGC-A-AAAGACTTAGTC
|
|
5
|
+
i galGal2.chrM N 0 C 0
|
|
6
|
+
s oryCun1.scaffold_140182 113 82 + 20791 GTTAATGTAGCTTAA--CAACAAAGCAAAGCACTGAAAATGCTTAGATGAGCCTTCCC--GG-CTCCATAAAC-ATAAAGGTTTGGTC
|
|
7
|
+
i oryCun1.scaffold_140182 N 0 C 0
|
|
8
|
+
s rn4.chrM 2 78 + 16300 --TAATGTAGCTTA---TAATAAAGCAAAGCACTGAAAATGCTTAGATG-GATTCAAA--AA-TCCCATAAAC-ACAAAGGTTTGGTC
|
|
9
|
+
i rn4.chrM N 0 C 0
|
|
10
|
+
s hg18.chrM 578 84 + 16571 GTTTATGTAGCTTACCTCCTCAAAGCAATACACTGAAAATGTTTAGACGGGCTCACAT--CA-CCCCATAAAC-AAATAGGTTTGGTC
|
|
11
|
+
i hg18.chrM N 0 C 0
|
|
12
|
+
s panTro2.chrM 4 80 + 16554 ----ATGTAGCTTACCCCCTCAAAGCAATACACTGAAAATGTTTCGACGGGTTTACAT--CA-CCCCATAAAC-AAACAGGTTTGGTC
|
|
13
|
+
i panTro2.chrM N 0 C 0
|
|
14
|
+
s rheMac2.chr14 30986862 84 - 133002572 GTTAATGTAGCTTAATTATTTACAGCAAGACATTGAAAATGTCTAGATGGGATTACAC--AA-CCCTATAAAC-AGATAAATTTGGTC
|
|
15
|
+
i rheMac2.chr14 N 0 N 0
|
|
16
|
+
s bosTau2.chrM 363 80 + 16338 GTTGATGTAGCTTAAC-C--CAAAGCAAGGCACTGAAAATGCCTAGATG-AGTCTCCC--AA-CTCCATAAAC-ACATAGGTTTGGTC
|
|
17
|
+
i bosTau2.chrM N 0 C 0
|
|
18
|
+
s canFam2.chrM 2 80 + 16727 --TAATGTAGCTTAAT-TAATAAAGCAAGGCACTGAAAATGCCAAGATG-AGTCGCAC--GA-CTCCATAAAC-ATAAAGGTTTGGTC
|
|
19
|
+
i canFam2.chrM N 0 C 0
|
|
20
|
+
s dasNov1.scaffold_23239 3802 82 - 16977 GTCAACGTAGCTTAA--GTCTAAAGCGAGGCACTGAAAATGCCTAAACGAATCCTAAT--GA-TTCCGCAGAC-ACACAGGTCTGGTC
|
|
21
|
+
i dasNov1.scaffold_23239 N 0 C 0
|
|
22
|
+
s loxAfr1.scaffold_36650 3007 83 + 16266 GTTAATGTAGCTTAA--AACAAAAGCAAGGTACTGAAAATACCTAGACGAGTATATCC--AA-CTCCATAAACAACAAAGGTTTGGTC
|
|
23
|
+
i loxAfr1.scaffold_36650 N 0 C 0
|
|
24
|
+
s echTel1.scaffold_49882 260 78 - 7170 GTTAATGTAGCTTAA--TA-AAAAGTGAGGCACTGAAAATGCCTAGATGAGTAT---T--AA-CTCCATAAAC-ATAAAGGTTTGGTT
|
|
25
|
+
i echTel1.scaffold_49882 N 0 C 0
|
|
26
|
+
s monDom4.chrUn 117151420 82 + 174229318 GTTGATGTAGCTTAA--CTTAAAAGCAAAGCACTGAAAATGCTTAGATG-GTTTATACTAAA-ACCCATAAAC-A-AAAGGTTTGGTC
|
|
27
|
+
i monDom4.chrUn N 0 C 0
|
|
28
|
+
s tetNig1.chrUn_random 103509752 81 + 171761319 GCTAGTGTAGCTTAA--TA--AAAGCATAACACTGAAGATGTTAAGATGGGCCCTAGA--AAGCCCCACAGGC-ACAAAGGCTTGGTC
|
|
29
|
+
i tetNig1.chrUn_random N 0 C 0
|
|
30
|
+
s fr1.chrUn 320907090 81 + 349519338 GCTAGCGTAGCTTAA--CC--AAAGCAGAGTACTGAAGATGCTAAGATGGGCCCTGAA--AAGTCCCGCAGGC-ACAAAAGCTTGGTC
|
|
31
|
+
i fr1.chrUn N 0 C 0
|
|
32
|
+
s danRer4.chrM 950 82 + 16596 GCTAGCGTAGCTTAA--AA-TAAAGCACGGCACTGAAGCTGCCAAGATGGGCCCTAAT--AAGCTCCGCATGC-ACAAAGGCATGGTC
|
|
33
|
+
i danRer4.chrM N 0 C 0
|
|
34
|
+
|
|
35
|
+
a score=1709796.000000
|
|
36
|
+
s mm8.chrM 81 379 + 16299 CTGGCCTTATAATTAATTAGAGGTAAAATTACACATGCAAACCTCCATAGACCGGTGTAA-AATCCCTTAAACATTT-ACTTA--------AAATTTAAGGAGAGGGTATCAAGCACAT--------TAA--AATAGCTTAAGACACCTTGCCT-AGCCACACCCCCACGGG-ACTCAGCAGTGATAAATATTAAGCAATAAACG---AAAGTTTGACTAAGTTA-TACCT---C-TTAGGGTT-GGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAAT-TATCTT-CGGCGTAAAACGTGTCAACT----ATAAATAAATA-----AATAGAATTAAAATCCAACTTA-TATGT-GAAAATTCATTGTTAGGACCT-AAACTCAATAACGAAAGTAATTCT----AGTCA---------TT
|
|
37
|
+
s oryCun1.scaffold_140182 195 382 + 20791 CTGGCCTTTTTATTGTTTTGTAGCAACCTTACACATGCAAGACTCCTCACGCCAGTG-AG-AATGCCCTTAACATCA-AACTA--------GATCAAGAGGAGCGGACATTAAGCACAC--------TAATCAGTAGCTCAAGATGCCTTGCTT-AACCACACCCCCAAGGG-ATACAGCAGTGATAAATATTTAGCAATGAACG---TAAGTTTGACTAAGTTA-TGCTA---CTTTAGGGTT-GGTAAATCTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAATTAATAAATATC-CGGCGTAAAGCGTGATTAGA----ATAAACAACAA-----AATAAAATCAAATAACAACTAA-GCTGT-AAAAAGTAATAGTTGCAAACA-AAAATAAACAACGAAAGTGATTTT----ATACT---------CT
|
|
38
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
39
|
+
s rn4.chrM 80 379 + 16300 CTGGCCTTATAATTAATTGGAGGTAAGATTACACATGCAAACATCCATAAACCGGTGTAA-AATCCCTTAAAGATTT-GCCTA--------AAACTTAAGGAGAGGGCATCAAGCACAT---------AA--TATAGCTCAAGACGCCTTGCCT-AGCCACACCCCCACGGG-ACTCAGCAGTGATAAATATTAAGCAATGAACG---AAAGTTTGACTAAGCTAGTACCT---C-TCAGGGTT-GGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAAT-TATTTT-CGGCGTAAAACGTGCCAACT----ATAAATCTCAT-----AATAGAATTAAAATCCAACTTA-TATGT-GAAAATTCATTGTTAGGACCT-AAGCCCAATAACGAAAGTAATTCT----AATCA---------TT
|
|
40
|
+
i rn4.chrM C 0 C 0
|
|
41
|
+
s hg18.chrM 662 382 + 16571 CTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTG-AG-TTCACCCTCTAAATC--ACCAC--------GATCAAAAGGGACAAGCATCAAGCACGCAG------CAA--TGCAGCTCAAAACGCTTAGCCT-AGCCACACCCCCACGGG-AAACAGCAGTGATTAACCTTTAGCAATAAACG---AAAGTTTAACTAAGCTA-TACTAAC-C-CCAGGGTT-GGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAAT-AGAAGC-CGGCGTAAAGAGTGTTTTAG----ATCACCCCCTC--CCCAATAAAGCTAAAACTCACCTGA-GTTGT-AAAAAACTCCAGTT--GACAC-AAAATAGACTACGAAAGTGGCTTT----AACAT---------AT
|
|
42
|
+
i hg18.chrM C 0 C 0
|
|
43
|
+
s panTro2.chrM 84 376 + 16554 CTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGCCCC-GTG-AG--TCACCCTCTAAATC--GCCAT--------GATCAAAAGGAACAAGTATCAAGCACGCAG------CAA--TGCAGCTCAAAACGCTTAGCCT-AGCCACACCCCCACGGG-AGACAGCAGTGATAAACCTTTAGCAATAAACG---AAAGTTTAACTAAGCCA-TACTAAC-C-TCAGGGTT-GGTCAATTTCGTGCTAGCCACCGCGGTCATACGATTAACCCAAGTCAAT-AGAAAC-CGGCGTAAAGAGTGTTTTAG----ATCACCCCCCC------ATAAAGCTAAAATTCACCTGA-GTTGT-AAAAAACTCCAGCT--GATAC-AAAATAAACTACGAAAGTGGCTTT----AACAC---------AT
|
|
44
|
+
i panTro2.chrM C 0 C 0
|
|
45
|
+
s rheMac2.chr5 34435460 378 - 182086969 ctgGCCTTTTCCTTAGCTCTTAGTAGGATTACACATGCAAGCATCCCCACCCCAGTG-AAAAATGCCCTCTAGATC--ACCG---------GATCAAAAGGAGCAGGTATCAAGCATGCAT------GAA--TGCACCTCAAAACACTTTGCTC-AACCACACCCCCACGGG-AAACAGCAGTGATAAATCCTTAGTAATAAATG---GAAGTTTGACCAAGCCA-TACTAATAT-TTAGGGTT-GGTTAATTTCGTGCCAGTCA-CGTGGCCATAAGATTAACCCAAGCTAAT-AGAACT-TGGCGTAAAGAATGTTTAAG----GTCTACCCTCA------ATAAAGCTAAACTCCATTTAA-GCTGTAAAAAAACTCCAGCT--GAAAT-AAAATATACTACAAAAGTGGCTTT----AATAT----------C
|
|
46
|
+
i rheMac2.chr5 N 0 C 0
|
|
47
|
+
s bosTau2.chrM 443 376 + 16338 CCAGCCTTCCTGTTAACTCTTAATAAACTTACACATGCAAGCATCTACACCCCAGTG-AG-AATGCCCTCTAGGTT--ATTAA--------AACTAAGAGGAGCTGGCATCAAGCACACAC------CC---TGTAGCTCACGACGCCTTGCTT-AACCACA-CCCCACGGG-AAACAGCAGTGACAAAAATTAAGCCATAAACG---AAAGTTTGACTAAGTTA-TATTA---A-TTAGGGTT-GGTAAATCTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAGCTAAC-AGGAGTACGGCGTAAAACGTGTTAAAG----CACCATACCAA------ATAGGGTTAAATTCTAACTAA-GCTGT-AAAAAGCCATGATT--AAAATAAAAATAAATGACGAAAGTGACCCT----ACAAT---------AG
|
|
48
|
+
i bosTau2.chrM C 0 C 0
|
|
49
|
+
s canFam2.chrM 82 378 + 16727 CTAGCCTTCCTATTAGTTTTTAGTAGACTTACACATGCAAGCCTCCACGCCCCAGTG-AG-AATGCCCTTAAAATC--ACCAG-------TGATCTAAAGGAGCAGGTATCAAGCACACTC------TTA--AGTAGCTCATAACACCTTGCTA-AGCCACACCCCCACGGG-ATACAGCAGTGATAAAAATTAAGCCATAAACG---AAAGTTTGACTAAGCCA-TACTA---A-ATAGGGTT-GGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAAT-AGGCCTACGGCGTAAAGCGTGTTCAAG----ATACTTTTACA------CTAAAGTTAAAACTTAACTAA-GCCGT-AAAAAGCTACAGTT--ATCAT-AAAATAAACCACGAAAGTGACTTT----ATAAT---------AA
|
|
50
|
+
i canFam2.chrM C 0 I 1
|
|
51
|
+
s dasNov1.scaffold_23239 3884 386 - 16977 CTAGCCTTACTATTAATTCATAACAAAATTACACATGCAAGTATCAGCACACCAGTG-AG-AATGCCCTCTAACTC--TTATA--------GATCAAAAGGAGCAAGCATCAAGTACACACAGCCCTTAC--AGTAGCTCATAACGCTTTGCTC-AACCACACCCCCACGGG-ATACAGCAGTGATAAAAATTAAGCAATAAGCG---AAAGCTTGACTAAGTTA-TGTTATT-A-TAAGGGTT-GGTAAATTTCGTGCCAGCAACCGCGGTCATACGATTAACCCAAATTAAT-AGTTAT-CGGCGTAAAGCGTGTTTAAG----ACACCTAGACA------ATAGAGTTAAACCCTTACTAC-GCTGT-AAAAAGCCTTAGTAGGACCAT-AAACCCTTCAACGAAAGTGACTCT----AATTT---------AT
|
|
52
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
53
|
+
s loxAfr1.scaffold_36650 3090 383 + 16266 CCGGCCTTCTTATTGGTTACTAGGAAACTTATACATGCAAGTATCCGCCCGCCAGTG-AA-TACGCCTTCTAAATC--ATCAC-------CGATCAAAGAGAGCTGGCATCAAGCACACAC---TCTAAG--TGTAGCTCATGACGTCTCGCCT-AGCCACACCCCCACGGG-AAACAGCAGTAGTAAATATTTAGCAATTAACA---AAAGTTAGACTAAGTTA-TCCTAA--T-AAAGGACT-GGTCAATTTCGTGCCAGCAACCGCGGCCATACGATTAGTCCAAATTAAT-AAGCATACGGCGTAAAGCGTATCAGAA----GAATTAAGAAA------ATAAAGTTAAATCTTATACTA-GCTGT-TTAAAGCTCAAGATAAGACAT-A-AATAACCTACGAAAGTGACTTT----AATAA---------TC
|
|
54
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
55
|
+
s echTel1.scaffold_49882 338 378 - 7170 CTAGCCTTTTTATTAGTTCTTAATAAAATTATACATGCAAGTATCCACCCCCCAGTG-AA-AATGCCCTTAAACTT--ACTTA-------TAATTAAGAGGAGCAGGTATCAAGCACA-------CTTAA--TGTAGCTCACAACACCTTGCTA-AGCCACACCCTCACGGG-ACACAGCAGTAATAAAAATTAAGCAATTAACG---GAAGTTTGACTTAGTTA-TATTAT--T-TAATTAGTCGGTCAACTTCGTGCCAGCCACCGCGGTCATACGAAGGACTTGAACTAAT-AAATAC-CGGCGTAAAGCGTGATTAAG----ATCTTTAAACA------ATAAAACAAAAAC-TATTCTATGCCGT-AAAAAGCC--AGAGAATACTT-ATAATAAATAACGAAGGTAATTTT----ATAAT---------TT
|
|
56
|
+
i echTel1.scaffold_49882 C 0 C 0
|
|
57
|
+
s monDom4.chrUn 117151502 391 + 174229318 CTAGCCTTCTTGTTAATTTTAATTAGACCTACACATGCAAGTTTCCGCTGCCCTGTG-AG-AATGCCCTCAAAACT--ACTCAATTCTCCAAGATAAGAGGAGCTGGTATCAGGCACACAC------TACT-AGTAGCCAACTACACCTTGCTC-AACCACACCCCCACGGG-AAACAGCAGTGATTAAAATTAAGCTATAAACG---AAAGTTTGACTAAATCA-TAGTTAT-C-TAAGGGTT-GGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAATTAAC-AAGCCTCCGGCGTAAAGCGTGTCCAAA----CAAAAGACTAA----TAATAAAGTTAATACTTAACTAA-GTTGT-AACACACTCCAGTTA-ATACT-AAGATAAACTATTAAAATAACTTT----AATAA---------AG
|
|
58
|
+
i monDom4.chrUn C 0 C 0
|
|
59
|
+
s galGal2.chrM 1309 395 + 16775 CTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTG-AA-AATGCCCCCAAACCT--TTCTT-----CCCAAGCAAAAGGAGCAGGTATCAGGCACACTC------AGC--AGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTG---TAAACTTGACTTAGCCA-TAGCAA--C-CCAGGGTT-GGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAAT-AGCTACCCGGCGTAAAGAGTGGCCACATGTTATCTGCACCAG------CTAAGATTAAAATGCAACCAA-GCTGT-CATAAGCCTAAGATC-CACCT-AAACCCAAC--CCAAATCCATCTT----AGCCTCAACGATTAAT
|
|
60
|
+
i galGal2.chrM C 0 C 0
|
|
61
|
+
s xenTro2.scaffold_18005 958 384 + 3405 CCAGCCTTGTCATCAACTTTATCTGAACTTACACATGCAAGCATCCGCATTCCCGTG-AA-AATGCCCTTAAGCCC--CTAAA-----ACAGAGGATAAGGAGCCGGTATCAGGCACGACC-----------ATCAGCCCACGACACCTTGCTA-TGCCACACCCACAAGGGAACTCAGCAGTGATAAACATTGAAC-ATGAGCGATTAAAGCTCGACTCAGTTA-CAGAT---A-ACAGAGTT-GGTCAATCTCGTGCCAGCCGCCGCGGTTATACGAGAAACTCAAGTTGAT-AATTCA-CGGCGTAAAGCGTGATTAAG----GTTCACCCTCA------CTAGAGTCAAACCCTAGCTAA-GCTGT-CGCACGCTTTCGCTA-GACTG-AAGAACACTAACGAAAGTAACTCTACCCAACAT---------AC
|
|
62
|
+
i xenTro2.scaffold_18005 N 0 C 0
|
|
63
|
+
s tetNig1.chrUn_random 103509833 382 + 171761319 CTGACTTTACTAACAGCTCTAGCCAAACTTACACATGCAAGTATCCGCACCCCCGTG-AG-AATGCCCTACACACCC-TGCCC--------GGGAATTAGGAGCCGGTATCAGGCACAC-C------CCT--CGTAGCCCATGACGCCTTGCTT-AGCCACACCCCCAAGGGAACTCAGCAGTGATAAACATTAAGCCATAAGTG---AAAACTTGACTTAGCTA-CGGCT---T-AGAGGGCC-GGTAAAACTCGTGCCAGCCACCGCGGTTATACGAGAGACCCAAGTTGTT-AGCCCC-CGGCGTAAAGAGTGGTTAAA----ACACCAAACAC--CAAACTGAGGCCGAACGCCCTCAAG-GCAGT-TATACGCTCCCGAGG-ACATG-AAGGACAATTACGAAGGTAGCCTC----ACCCC---------CT
|
|
64
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
65
|
+
s fr1.chrUn 320907171 383 + 349519338 CTGACTTTACTAACAACTCTGATCAAACTTACACATGCAAGTATCCGCATCCCAGTG-AA-AATGCCCCCCGCCCCC-CGTCC--------GGAAATAGGGAGTTGGTATCAGGCACACAA------ATT--TGTAGCCCATGACACCTAGCTT-TGCCACGCCCCCAAGGGAATTCAGCAGTGATAAACATTAAGCCATAAGTG---AAAACTTGACTTAGTCA-TGATC---T-AAAGAGTC-GGTAAAACTCGTGCCAGCCACCGCGGTTATACGAGAGACCCAAGTTGTT-AGCCAA-CGGCGTAAAGGGTGGTTAGA----ACTAAAAACAA--CAAACTGAGACCGAACACCTTCAAG-GCTGT-TATACGCTTCCGAAG-CAACG-AAGAACAATAACGAAAGTAGCCTC----ACTAA---------CT
|
|
66
|
+
i fr1.chrUn C 0 N 0
|
|
67
|
+
s danRer4.chrM 1032 378 + 16596 CCGACCTTTTGATCAGCTTTTACCTAATTTACACATGCAAGTCTCCGCACCCCTGTG-AA-TACGCCCTCAATCCCCAAACCT--------GGGGACGAGGAGCAGGTATCAGGCACAA-A------ATT--TTTAGCCCAAGACGCCTAGCCA-AGCCACACCCCCAAGGGGATCCAGCAGTGACAAACATTAAGCTATAAGTG---AAAACTTGACTCAGTTA-AGGTA---A-AGAGAGCC-GGTAAAACTCGTGCCAGCAACCGCGGTTAAACGAGAGGCTCTAGTTGAT-ATACTA-CGGCGTAAAGGGTGGTTAAG---------GAACAATGTAAAATAAAGCCAAACGGCCCTTTA-ACTGT-TATACGCTTTTAGAT-GCTAG-AGGCCCAAACACGAAAGTAGCTTT----A--AA---------TT
|
|
68
|
+
i danRer4.chrM C 0 I 6
|
|
69
|
+
|
|
70
|
+
a score=1731261.000000
|
|
71
|
+
s mm8.chrM 460 260 + 16299 TATA--ATACACGACAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCATAAACCTAAATAATTAAATTTAACA-AAAC-TATTTGCCAGAGAACTACTAG--CCATAGCTTAAAACTCAAAGGACT---TGGCGGTACTTTATATCCATCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGCTCTACCTCACCATCTCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAACCCTAA--AAAGGTATTAAAGT
|
|
72
|
+
s oryCun1.scaffold_140182 577 256 + 20791 TCGA--ACTCACGATAGCTAAGGCCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACTTTGATAATTTCA--TAACA-AAAT-TATTCGCCAGAGAACTACAAG--CCAAAGCTTAAAACTCAAAGGACT---TGGCGGTGCTTTATACCCACCTAGAGGAGCCTGTTCCGTAATCGATAAACCCCGATAAACCTTACCACTCTTTGCCAACTCAGCCTATATACCGCCATCTTCAGCGA--CCTAA--AAAGGAGAAAAAGT
|
|
73
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
74
|
+
s rn4.chrM 459 261 + 16300 TATATAATGCACGATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTTAATAATTAAACCTA-CA-AAAT-TATTTGCCAGAGAACTACTAG--CTACAGCTTAAAACTCAAAGGACT---TGGCGGTACTTTATATCCATCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGTTCTACCTTACCCCTTCTCGCTAATTCAGCCTATATACCGCCATCTTCAGCAAACCCTAA--AAAGGCACTAAAGT
|
|
75
|
+
i rn4.chrM C 0 C 0
|
|
76
|
+
s hg18.chrM 1044 256 + 16571 CTGA--ACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAA-TCAACA-AAAC-TGCTCGCCAGAACACTACGAG--CCACAGCTTAAAACTCAAAGGACC---TGGCGGTGCTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGC----TCAGCCTATATACCGCCATCTTCAGCAAACCCTGA-TGAAGGCTACAAAGT
|
|
77
|
+
i hg18.chrM C 0 C 0
|
|
78
|
+
s panTro2.chrM 460 256 + 16554 CTGA--ATACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACTTCAACAGTTAAA-TTAACA-AAAC-TGCTCGCCAGAACACTACGAG--CCACAGCTTAAAACTCAAAGGACC---TGGCGGTGCTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCGCCTCTTGC----TCAGCCTATATACCGCCATCTTCAGCAAACCCTGA-TGAAGGTTACAAAGT
|
|
79
|
+
i panTro2.chrM C 0 C 0
|
|
80
|
+
s rheMac2.chr5 34435838 239 - 182086969 CTGA--AGACACAATAGCTAAGATCGAAACTTGGATTAGATACCCCACTATGCTCAGCTCTAAACTCTAATAGTTAGA-TTAACA-AAAC-CACTCGCCAGAGTACTACAAG--AAACAGCTGAAAACTCAAAGGACT---TGGTGGTGCTTTATATCCCCCTAGAGGAGCCTGTTCTAT-ATTGATAAACCCTGATGCACCTCAGTACCTCTTGCCA--CCAGCCTATATACCGCCATCTTCAGCAAACCC-------------------
|
|
81
|
+
i rheMac2.chr5 C 0 I 233
|
|
82
|
+
s bosTau2.chrM 819 258 + 16338 CCGA--C-GCACTATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACACAGATAATTACA-TAAACA-AAAT-TATTCGCCAGAGTACTACTAG--CAACAGCTTAAAACTCAAAGGACT---TGGCGGTGCTTTATATCCTTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATAAACCTCACCAATTCTTGCTAATACAGTCTATATACCGCCATCTTCAGCAAACCCTAA--AAAGGAAAAAAAGT
|
|
83
|
+
i bosTau2.chrM C 0 C 0
|
|
84
|
+
s canFam2.chrM 461 258 + 16727 CTGA--CTACACGATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACATAGATAATTTTA-C-AACA-AAAT-AATTCGCCAGAGGACTACTAG--CAATAGCTTAAAACTCAAAGGACT---TGGCGGTGCTTTATATCCCTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATAAACCTCACCACCTTTCGCTAATTCAGTCTATATACCGCCATCTTCAGCAAACCCTCA--AAAGGTAGAACAGT
|
|
85
|
+
i canFam2.chrM I 1 C 0
|
|
86
|
+
s dasNov1.scaffold_23239 4270 258 - 16977 CTGA--CTACACGATAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAACTAAAACAGTT-CA-CAAACA-AAAC-TGTTCGCCAGAGTACTACTAG--CAACAGCTTAAAACTCAAAGGACT---TGGCGGTGCTTTACATCCTTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATATACCTCACCACCCCTTGCTAATACAGCCTATATACCGCCATCTTCAGCAGACCCTAG--TAAGGCACCACAGT
|
|
87
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
88
|
+
s loxAfr1.scaffold_36650 3473 259 + 16266 CTAA--ACATACGATAGCTAGGGTACAAACTGAGATTAGATACCTCACTATGCCTAGCCCTAAACTTTGATAGCTACC-TTTACA-AAGC-TATCCGCCAGAGAACTACTAG--CCAGAGCTTAAAACTTAAAGGACT---TGGCGGTGCTTTATATCCACCTAGGGGAGCCTGTCTCGTAACCGATGAACCCCGATATACCTTACCGTCACTTGCTAATTCAGTCCATATACCACCATCTTCAGCAAACCCCTA--TAGGGCACAAAAGT
|
|
89
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
90
|
+
s echTel1.scaffold_49882 716 260 - 7170 CTGA--ACCCACGATAGCTAAGAAACAAACTGGGATTAGATACCCCACTATGCTTAGCCTTAAACCTAGATAGT--CT-ATAACA-AGACATATCCGCCAGAGAACTACTAG---CAAAGCTAAAAACTTAAAGAACTCTGTGGCGGTGCTTCACACCCACCTAGAGGAGCCTGTTATGTAATTGATACACCCCACTAAACCCTACCACCACTTGCTAAGTCAGTCTATATACCGCCATCCTCAGCAAAACCCCA--AAAGGCATATCAGT
|
|
91
|
+
i echTel1.scaffold_49882 C 0 C 0
|
|
92
|
+
s monDom4.chrUn 117151893 257 + 174229318 CTGA---TACACGAAAACTAAGGTACAAACTGGGATTAGATACCCCACTATGCTTAGTCATAAACCAAAGTAGTTAGA--TAACA-AAAC-TACTCGCCAGAGAACTACTAG--CTACTGCTTAAAACTCAAAGGACT---TGGCGGTGCCCTAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATATACCCAACCCCATCTTGCCAATACAGCCTATATACCGCCATCGTCAGCCCACCTTAA--AAAAGATACAAAGT
|
|
93
|
+
i monDom4.chrUn C 0 C 0
|
|
94
|
+
s galGal2.chrM 1704 263 + 16775 TTTA--ACCCACGAAAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAATCTAGATACCTCCC-ATCACA-CATG-TATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACT---TGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAATCCACGATTCACCCAACCACCCCTTGCCAGCACAGCCTACATACCGCCGTCGCCAGCCCACCTCTAATGAAAGAACAACAGT
|
|
95
|
+
i galGal2.chrM C 0 C 0
|
|
96
|
+
s xenTro2.scaffold_18005 1342 254 + 3405 CTGA--ACTCACGACCGCTAGGAAACAAACTGGGATTAGATACCCCACTATGCCTAGCCTTAAACCTTGAC-----CA-ATTACA-CTTC-AATCCGCCAGGGAACTACGAG--CCCAAGCTTAAAACCCAAAGGACT---TGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATACCCCCCGCTTAACCTCACCACTTCTTGCCAAACCCGCCTATATACCACCGTCGCCAGCCCACCCCGT--GAGGGGACACAAGT
|
|
97
|
+
i xenTro2.scaffold_18005 C 0 C 0
|
|
98
|
+
s tetNig1.chrUn_random 103510215 258 + 171761319 TTGA--ACCCACGAAAGCTAGGGTACAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAACAATGATATTCTAA---TACATTCCT-TATCCGCCCGGGTACTACGAG--CATTAGCTTAAAACCCAAAGGACT---TGGCGGTGCTTTAAACCCATCTAGAGGAGCCTGTTCTAGAACCGATAATCCCCGTTAAACCTCACCCCTTCTTGTCTAATCCGCCTATATACCACCGTCGTCAGCCTACCCTGT--GAAGGACTAACAGT
|
|
99
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
100
|
+
s danRer4.chrM 1416 257 + 16596 CTGA--ACCCACGAAAGCTAAGAAACAAACTGGGATTAGATACCCCACTATGCTTAGCCATAAACAAAGACATTTAAT---CACA-ACAA-TGTTCGCCCGGACACTACAAG--CATAAGCTTAAAACCCAAAGGACC---TGACGGTGCCTTAGATCCCCCTAGAGGAGCCTGTTCTAGAACCGATTATCCCCGTTAAACCTCACCATTTCTAGCAAAATCAGCCTATATACCACCGTCGCCAGCTTACCCTGT--GAAGGAATAACAGT
|
|
101
|
+
i danRer4.chrM I 6 C 0
|
|
102
|
+
|
|
103
|
+
a score=-15759.000000
|
|
104
|
+
s mm8.chrM 720 22 + 16299 AAGCAAAAGAAT---------------------------------CAAACAT-------------------------------------------------------------AAA
|
|
105
|
+
s oryCun1.scaffold_140182 833 20 + 20791 AAGCTCAATTA----------------------------------CTACCGT--------------------------------------------------------------AA
|
|
106
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
107
|
+
s rn4.chrM 720 21 + 16300 AAGCACAAGAA----------------------------------CAAACAT-------------------------------------------------------------AAA
|
|
108
|
+
i rn4.chrM C 0 C 0
|
|
109
|
+
s hg18.chrM 1300 21 + 16571 AAGCGCAAGTA----------------------------------CCCACGT-------------------------------------------------------------AAA
|
|
110
|
+
i hg18.chrM C 0 C 0
|
|
111
|
+
s panTro2.chrM 716 21 + 16554 AAGCACAAGTA----------------------------------CCCACGT-------------------------------------------------------------AAA
|
|
112
|
+
i panTro2.chrM C 0 C 0
|
|
113
|
+
s rheMac2.chr5 34436310 116 - 182086969 aagcaggagaatggcgtgaacccgggaggtggagcttgcagtgagcccagatcaggccactgtagtccagcctgggcaacagagtgagactctgtctcaaaaaacaaaaaacaaaa
|
|
114
|
+
i rheMac2.chr5 I 233 C 0
|
|
115
|
+
s bosTau2.chrM 1077 22 + 16338 AAGCGTAATTAT---------------------------------GATACAT-------------------------------------------------------------AAA
|
|
116
|
+
i bosTau2.chrM C 0 C 0
|
|
117
|
+
s canFam2.chrM 719 22 + 16727 AAGCACAATCAT---------------------------------TTTACAT-------------------------------------------------------------AAA
|
|
118
|
+
i canFam2.chrM C 0 C 0
|
|
119
|
+
s dasNov1.scaffold_23239 4528 21 - 16977 GAGCACAATAA----------------------------------CATACAT-------------------------------------------------------------AAA
|
|
120
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
121
|
+
s loxAfr1.scaffold_36650 3732 22 + 16266 GAGCTTAATCAT---------------------------------AACCCAT-------------------------------------------------------------GAA
|
|
122
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
123
|
+
s echTel1.scaffold_49882 976 22 - 7170 AAGCATAATGAT---------------------------------AAGACAT-------------------------------------------------------------AAA
|
|
124
|
+
i echTel1.scaffold_49882 C 0 I 1561
|
|
125
|
+
s monDom4.chrUn 117152150 23 + 174229318 AAGCAAAATTATT--------------------------------TTTTCAT-------------------------------------------------------------AAA
|
|
126
|
+
i monDom4.chrUn C 0 C 0
|
|
127
|
+
s galGal2.chrM 1967 22 + 16775 GAGCTCAATAGC---------------------------------CCCTCGC-------------------------------------------------------------TAA
|
|
128
|
+
i galGal2.chrM C 0 C 0
|
|
129
|
+
s xenTro2.scaffold_18005 1596 22 + 3405 AGGCTCAATGAT---------------------------------CAAACAT-------------------------------------------------------------CAA
|
|
130
|
+
i xenTro2.scaffold_18005 C 0 C 0
|
|
131
|
+
s tetNig1.chrUn_random 103510473 22 + 171761319 AGGCAAAGTTGG---------------------------------CACAGCC-------------------------------------------------------------CAA
|
|
132
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
133
|
+
s danRer4.chrM 1673 22 + 16596 AAGCAAGATGGG---------------------------------CATAGCC-------------------------------------------------------------CAG
|
|
134
|
+
i danRer4.chrM C 0 C 0
|
|
135
|
+
|
|
136
|
+
a score=558754.000000
|
|
137
|
+
s mm8.chrM 742 124 + 16299 AACGTTAGGTCAAGGTGTAGCCAATGAAATGGGAAGAAATGGGCTACATTTTCT---TA-TA--AAAGAACATT-----ACTATACCCTTT--ATGAAA----CTAAAG--GACTAAGGAGGATTTAGTAGTAAATTAAGAAT-
|
|
138
|
+
s oryCun1.scaffold_140182 853 123 + 20791 AACGTTAGGTCAAGGTGTAGCTCATAGAGTGAGA--GCATGGGCTACATTTTCT---AC-TT---CAGAATATA-----CGAATTGCCCTT--ATGAAAC--TCTAAGG--GCCAAAGGAGGATTTAGTAGTAAATTAAGAAT-
|
|
139
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
140
|
+
s rn4.chrM 741 125 + 16300 AACGTTAGGTCAAGGTGTAGCCAATGAAGCGGAAAGAAATGGGCTACATTTTCT---TT-TCCCAGAGAACATT-----ACGA-AACCTTT--ATGAAA----CTAAAG--GACAAAGGAGGATTTAGTAGTAAATTAAGAAT-
|
|
141
|
+
i rn4.chrM C 0 C 0
|
|
142
|
+
s hg18.chrM 1321 124 + 16571 GACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCT---AC-CC---CAGAAAACT-----ACGATAGCCCTT--ATGAAAC---TTAAGG--GTCGAAGGTGGATTTAGCAGTAAACTGAGAGT-
|
|
143
|
+
i hg18.chrM C 0 C 0
|
|
144
|
+
s panTro2.chrM 737 124 + 16554 GACGTTAGGTCAAGGTGTAGCCTATGAGGTGGCAAGAAATGGGCTACATTTTCT---AC-CC---CAGAAAATT-----ACGATAACCCTT--ATGAAAC---CTAAGG--GTCAAAGGTGGATTTAGCAGTAAACTAAGAGT-
|
|
145
|
+
i panTro2.chrM C 0 C 0
|
|
146
|
+
s rheMac2.chr5 34436426 127 - 182086969 aaTGTTAGGTCAAGGTGTAGCCCATGAAGTGGCATGAAATGGGCTACATTTTCT---ATGTC---CAGAAAATT--T-CACAACAACCTTT--ATGAAAT---CTAAGA--GCTCAAGGAGGATTTAGCAGTAAACCAAGAGC-
|
|
147
|
+
i rheMac2.chr5 C 0 C 0
|
|
148
|
+
s bosTau2.chrM 1099 128 + 16338 AACGTTAGGTCAAGGTGTAACCTATGAAATGGGAAGAAATGGGCTACATTCTCT---ACACC---AAGAGAATCAAG-CACGAAAGTTATT--ATGAAA----CCAATA--ACCAAAGGAGGATTTAGCAGTAAACTAAGAAT-
|
|
149
|
+
i bosTau2.chrM C 0 C 0
|
|
150
|
+
s canFam2.chrM 741 125 + 16727 AAAGTTAGGTCAAGGTGTAACTTATGAGGTGGGAAGAAATGGGCTACATTTTCT---AC-CC---AAGAACATT--T-CACGAATGTTTTT--ATGAAA----TTAAAA--ACTGAAGGAGGATTTAGTAGTAAATTAAGAAT-
|
|
151
|
+
i canFam2.chrM C 0 C 0
|
|
152
|
+
s dasNov1.scaffold_23239 4549 126 - 16977 GACGTTAGGTCAAGGTGTAGCTTATGGGGTGGGAAGAAATGGGCTACATTTTCT---AA-TA---AAGAGCAAA----TACAAAAAACTTA--ATGAAACAATTTAAGA----CTAAGGTGGATTTAGTAGTAAGCTAAAAAT-
|
|
153
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
154
|
+
s loxAfr1.scaffold_36650 3754 126 + 16266 AAAGTTAGGCCGAGGTGTCGCCTACGTGACGGTCAAAGATGGGCTACATTTTCT---AT-TA---TAGAACAGA--CAAACGGATATCACT--CTGAAA----TGGGTG--GTTGAAGGCGGATTTAGTAGTAAACTAAGAAT-
|
|
155
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
156
|
+
s echTel1.scaffold_181343 2 129 + 18297 AACGTTAGGTCAAGGTGTAACCCATGTGGTGGAACCTAATGGGCTACATTTTCTAGCAT-TA---GAAAACCTT--C-AACGAAAGTACTA--ATGAAA----TTTCAGT-ACTAAAGGAGGATTTAGTAGTAAACTGAGAAT-
|
|
157
|
+
i echTel1.scaffold_181343 n 1561 C 0
|
|
158
|
+
s monDom4.chrUn 117152173 125 + 174229318 AACGTTAGGTCAAGGTGTAGCATATGATAGGGAAAGAAATGGGCTACATTATCT---AG-CT---TAGATTACA------CGAATCACATT--ATGAAAT---CTAATGTGCCTGAAGGAGGATTTAGTAGTAAATTAAGAAT-
|
|
159
|
+
i monDom4.chrUn C 0 C 0
|
|
160
|
+
s galGal2.chrM 1989 122 + 16775 TAAGACAGGTCAAGGTATAGCCTATGGGGTGGGA-GAAATGGGCTACATTTTCT---AA-CA---TAGAACAAA------CGAAAAAGGAT--GTGAAAC---CCGCCC--TTAGAAGGAGGATTTAGCAGTAAAGTGAGATC-
|
|
161
|
+
i galGal2.chrM C 0 C 0
|
|
162
|
+
s xenTro2.scaffold_18005 1618 123 + 3405 TACGTCAGGTCAAGGTGTAGCANATGAAGTGGGAAGAAATGGGCTACATTTTCT---AA-TA--CTAGAAAAAA-----CGAAAGATCTTT--ATGAAAC---C--AGA--TCAGAAGGCGGATTTAGCAGTAAAGAGAGACA-
|
|
163
|
+
i xenTro2.scaffold_18005 C 0 N 0
|
|
164
|
+
s tetNig1.chrUn_random 103510495 123 + 171761319 AACGTCAGGTCGAGGTGTAGCGTATGGAGGGGGAAGAAATGGGCTACATTCTCT---GC-CC---AGAGAACCA------CGAATGACATA--ATGAAA----CACATG--TCTGAAGGAGGATTTAGCAGTAAGTAAAGAAAC
|
|
165
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
166
|
+
s danRer4.chrM 1695 122 + 16596 AAAGTCAGGTCGAGGTGTAGCACATGAAATGGGAAGAAATGGGCTACACTTTCT---AC-CC---CAGAATATA------CGAA-AATGTAACATGAAA----CA-ATA--CTTGAAGGAGGATTTAGCAGTAAA-AGAGAAGC
|
|
167
|
+
i danRer4.chrM C 0 C 0
|
|
168
|
+
|
|
169
|
+
a score=2286094.000000
|
|
170
|
+
s mm8.chrM 866 631 + 16299 AGA------GAGCTTAATTGAATTGAGCAATGAAGTACGCACACACCGCCCGTCACCCTCCT--CAAAT----------TA-AATTAAACTTAACA-TA---AT-TAATTTCTAGACATCCGTTT-ATG-AGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGAAT--A-ATCATAGTGTAGCT-TA-A-TATTAAAGCATCTGGCCTACACCCAGAAGAT---TTCATGACCAA--TGAACACTCTGA-AC--TAATC-----CTAGCCCTA--G-CCC-TA---------CACAAATAT--AA---------TTA-TACT--ATTAT------------ATAAATCAAAACATT-TATCC--TA-----CTAAAAGTATTGGAGAAAGAA-----AT-----TCGTACATCTAGGAGCTATAGAA----CTAGTACCGCAAGGGAAA-GATGAAA-G--ACTAATTAA------------AAGTAAGAACAAG-CAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAG-AAAACTTCTAACTAAAAGAATTACAGCTAGAAACCCCGAAA-CCAAACGAGCTACCTAAAAACAATTT-----T--AT---GAATCAACTCGTCTATGTGGCAAAATAGTGAGAAGATTTTTAGGTAGAGGTGAAAAGCCTAACGAGCTTGGTGATAGCTGGTTACCCA-AAAA-ATGAATTTAAGTTCAATTTTAAA------C-------TTGCTA------------------AAAA------AA-CAA
|
|
171
|
+
s oryCun1.scaffold_140182 976 628 + 20791 AGA------GTGCTTAATTGAACAAGGCCATGAAGCACGCACACACCGCCCGTCACCCTCCT--CAAGT-------------GACAAATATTTACT-TATACCT-AATTACATAAATAGACAAGC-ATA-AGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGACA--C-TTCAGAGCGTAGCT-TA-A--CTTAAAGCACTTGGCTTACACCCAAGAGAT---TTCAT--TTAC--TGACCACTCTGA-GC--CAACA-----CTAGCCCTA--T-GA---A----------ACTAACACTGAA---------CCA-GAGTA-ATTAG------------CTAAACTAAACCATT-CACCC--CAT---ATTAAAAGTATAGGAGATAGAA-----AT-----TTA--TATCCAGGCGCTATAGAG----AAAGTACCGTAAGGGAAA-GATGAAA-G--ATTAGTTAA------------TAGCACAAAAAAG-CAGAGATTACTTCTCTTACCTTTTGCATAATGAATTAGCTAG-AAAATCCTTAGCAAAAAGAATTTTAGTTAAGAACCCCGAAA-CCAGACGAGCTATTTATGAGCAGTTG-----A--AA---GAACGAACCCGTCCATGTGGCAAAATGGTGGGAAGACTTGTAAATAGAGGTGAAAAGCCAACCGAGCCTGGTGATAGCTGGTTGTCCA-GAAT-A-GAATTTTAGTTCAACTTTAAA------T-------TTTCCT------------------AAAG------GA-CAT
|
|
172
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
173
|
+
s rn4.chrM 866 628 + 16300 AGA------GAGCTTAATTGAATAGAGCAATGAAGTACGCACACACCGCCCGTCACCCTCCT--CAAAT----------TA-GATTGACATTCACA-TATACAT-AATTTCACTAACA--AATTT-ATG-AGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGAAT--A-ATCACAGTGTAGCT-TA-A-TCACAAAGCATCTGGCCTACACCCAGAAGAA---TTCATAAAAAA--TGAACACTTTGA-AC--TAACC-----CTAGCCCTA--C-AAC-CA----------ACCAACAT--AA---------CTA-AACC--CCCAC------------ATAAACTAAAACATT-TAACT--CA-------AAAAGTATTGGAGAAAGAA-----AT-----TTACTTACC-AAGAGCTATAGAG----AAAGTACCGCAAGGGAAATGATGAAA-G--ACTAATTTA------------AAGTAAAAACAAGACAAAGATTAAACCT-GTACCTTTTGCATAATGAATTAACTAG-AAAATCCTTAACAAAAAGAATTTAAGCTAAGAACCCCGAAA-CCAAACGAGCTACCTAAAAACAATTT-----C--AT---GAATCAACCCGTCTATGTAGCAAAATAGTGGGAAGATTTTTAGGTAGAGGTGAAAAGCCTATCGAGCTTGGTGATAGCTGGTTGCCCA-AAAA-A-GAATTTCAGTTCAAACTTTAA------G-------CTTCCA------------------TCAG------AA-CAA
|
|
174
|
+
i rn4.chrM C 0 C 0
|
|
175
|
+
s hg18.chrM 1445 625 + 16571 AGA------GTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCT--CAAGTA---------TA-CTTCAAAGGACATT-TA---AC-TAAAACCCCTACG--CATTT-ATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACG--A-ACCAGAGTGTAGCT-TA-A--CACAAAGCACCCAACTTACACTTAGGAGAT---TTCAACTTAAC-TTGACCGCTCTGA-GC--TAAAC-----CTAGCCCCA--A-ACC-CA----------CTCCACCT--TA---------CTA-CCAG--ACAAC------------CTTAGCCAAACCATT-TACCC--AA------ATAAAGTATAGGCGATAGAA-----AT-----TGA--AACC-TGGCGCAATAGAT----ATAGTACCGCAAGGGAAA-GATGAAA-A--ATTATAACC------------AAGCATAATATAG-CAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAG-AAATAACTTTGCAAGGAGAGCCAAAGCTAAGACCCCCGAAA-CCAGACGAGCTACCTAAGAACAGCTA-----A--AA---GAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCA-AGAT-A-GAATCTTAGTTCAACTTTAAA------T-------TTGCCC------------------ACAG------AA-CCC
|
|
176
|
+
i hg18.chrM C 0 I 2
|
|
177
|
+
s panTro2.chrM 861 626 + 16554 AGA------GTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCT--CAAGTA---------TA-CTTCAAAGGATACT-TA---ACTTAAACCCCCTACG--TATTT-ATATAGAGGAGATAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACG--A-ACCAGAGTGTAGCT-TA-A--CATAAAGCACCCAACTTACACTTAGGAGAT---TTCAACTCAAC-TTGACCACTCTGA-GC--CAAAC-----CTAGCCCCA--A-ACC-CC----------CTCCACCC--TA---------CTA-CCAA--ACAAC------------CTTAACCAAACCATT-TACCC--AA------ATAAAGTATAGGCGATAGAA-----AT-----TGT--AAAC-CGGCGCAATAGAC----ATAGTACCGCAAGGGAAA-GATGAAA-A--ATTATACCC------------AAGCATAATACAG-CAAGGACTAACCCCTGTACCTTTTGCATAATGAATTAACTAG-AAATAACTTTGCAAAGAGAACCAAAGCTAAGACCCCCGAAA-CCAGACGAGCTACCTAAGAACAGCTA-----A--AA---GAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCA-AGAT-A-GAATCTTAGTTCAACTTTAAA------T-------TTACCT------------------ACAG------AA-CCC
|
|
178
|
+
i panTro2.chrM C 0 I 2
|
|
179
|
+
s rheMac2.chr5 34436553 630 - 182086969 AGA------GTGCTTGGTTGAATAAGACCATGAAGCATGCACACACCACCCGTCACCCTCCT--CAAATA--------TTA-CTGTAGAAATCACTATT---AC-TAATAGTTTTATA--TGCAC-ATATAGAAGAGATAAGTTGTAACATGTTAGGCATACTGGCAAGTGTGCTTGGACA--A-ACCAAAGTGTAGCT-TA-A--ACCAAAGCATCTGGCTTACACCTGGAAAAT---TTCACTGTGAA-CTGATCACTTTGA-GC--TAACT-----CTAGTACCA--A-ACCTCG----------CTAAAAAA--TA---------TTA-TTAA--ACTAT------------CTTAATCAGGTGATT-TACTTTAGA------AAAAAGTATAGGTGATAGAA-----AT-----TTT--TACCATGGCGCAATAGAC----ATAGTACCATAAGGGAAA-GATGAAAGA--ACTATA-TC------------AAGCACTAAAAAG-CAAAGACAAGCCCTCATACTTTCTGCATAATGTATTAACTAG-AAAT-ACTTTACACAGAGAACTATAGCCAAGTCCCCCAAAA-ACAGACGAGCTACCCAAGAATAACTG-----A--AA---GAGCACACTCATCTATGTGGCAAAGTAGTGGGAAGATTCAGCAGCAGCGGTGACAAGCCTACCAAGCCTGGTGATAGCTGGTTATCCA-AGAT-A-GAATCTTAATTCAACTTTAAA------C-------TTAGCC------------------ACAG------AA-TTA
|
|
180
|
+
i rheMac2.chr5 C 0 I 1
|
|
181
|
+
s bosTau2.chrM 1227 638 + 16338 AGA------GTGCTTAGTTGAATTAGGCCATGAAGCACGCACACACCGCCCGTCACCCTCCT--CAAATAG--ATTCAGTG-CATCTAACCCTATT-TA---AA-CGCACTAGCTACA--TG--------AGAGGAGACAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGATA--A-ATCAAGATATAGCT-TA-A---ACAAAGCATCCAGTTTACACCTAGAAGAC---TTCATTCATTA--TGAATATCTTGA-AC--TAGAC-----CTAGCCCAAAGA-TAC-CC----------TCTCGACT--AA---------ACA-ACCAAGATAGA------------ATAAAACAAAACATT-TAATC--CCA---ATTTAAAGTATAGGAGATAGAA-----AT-----CTA--AGTA-CGGCGCTATAGAG----AAAGTACCGCAAGGGAAC-GATGAAA-GAAAAAAACTAA------------AAGTATAAAAAAG-CAAAGATTACCCCTTGTACCTTTTGCATAATGAATTAACTAGTATAAGACTTAACAAAATGAATTTTAGCTAAGCAGCCCGAAA-CCAGACGAGCTACTCACAAACAGTTT-----ACCAA---GAACTAACTCATCTATGTGGCAAAATAGTGAGAAGATTTGTAAGTAGAGGTGACATGCCTAACGAGCCTGGTGATAGCTGGTTGTCCAGAAAA-T-GAATCTAAGTTCAGCTTTAAA------G-------ATACCA------------------AAAAT----TCA-AAT
|
|
182
|
+
i bosTau2.chrM C 0 C 0
|
|
183
|
+
s canFam2.chrM 866 628 + 16727 AGA------GAGCTTAATTGAATAGGGCCATGAAGCACGCACACACCGCCCGTCACCCTCCT--CAAGTA---ATAAGACA-CAACCATAACCATA-TT---AA-CTTAACTAAAACA--CA--------AGAGGAGACAAGTCGTAACAAGGTAAGCATACCGGAAGGTGTGCTTGGATT--A-ATCAAAGTGTAGCT-TA-A---CTAAAGCGTCTGGCCTACACCCAGAAGAT---TTCATTACTTA--TGGCCACTTTGA-AC--AAAAG-----CTAGCCCAA--C-TAA-CC----------CCAAACTT--AA---------GTA-TTACAGACA-C------------ATAAAATAAAACATT-TAGTT--AAA--CAATAAAAGTATAGGAGATAGAA-----AT-----TTT--AAT--TGGAGCGATAGAG----ATAGTACCGTAAGGGAAT-GATGAAA-G--ACATCTTAA------------CAGTATTAAACAG-CAAAGATTACCCCTTCTACCTTTTGCATAATGAACTAGCCAG-AAACAACTTAACAAAGAGAACTTAAGCTAAGCTCCCCGAAA-CCAGACGAGCTACCCATAAACAATCT-----A-AAA---GGATCAACTCATCTATGTAGCAAAATAGTGAGAAGATTTGTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCACAGAC-A-GAATTTTAGTTCAACTTTAAA------T-------TTACCt------------------aaaa------aa-aat
|
|
184
|
+
i canFam2.chrM C 0 C 0
|
|
185
|
+
s dasNov1.scaffold_23239 4675 637 - 16977 AGA------GAGTTTAGCTGAACCAGGCCATAAAGCACGCACACACCGCCCGTCACCCTCTT--CAATTAT--AAGCGCCA-CATAAACTAAAACA-C----AT-TAATTCAGTAGCA--ACTAT-ATA-AGAAGAGACAAGTCGTAACAAGGTAAACATACTGGAAAGTGTGTTTGGAT---A-ACCAAAGTGTAGCT-TA-C-AACCAAAGCATCCGGCTTACACCCAGAAGAC---TTCAGATAGAC--TGACCACTTTGA-AC--TAGAC-----CTAGCCCTA--A-ACC-CA---------CAACAACAA--TA---------CTA-TCAC--ACAGC-----------AATAAATCAAAACATT-TACCA--AATACTAACTAAAGTATAGGAGATAGAA-----AT-----TTT--ACTA-AGGCGCTATAGAA----ATAGTACCGCAAGGGAAA-GATGAAA-G--ACCCCCTGA------------TAGTAAGAAACAG-CAAAGACTAATACTTTTACCTTTTGCATAATGAATTAACTAG-ACTAATTTTGGCAAAGAGAACTTTAGTCAAATATCCCGAAA-CCAGACGAGCTACTTATGGACAGTAA-----T--TA---GTACTAACTCATCTATGTCGCAAAATAGTGAGAAGATCTGTAAGTAGAGGTGAAAGACCAACCGAGCCTGGTGATAGCTGGTTGCCCA-GAAC-A-GAATTTTAGTTCAACTTAAAA------C-------TTATCT------------------CAAG------AA-CCA
|
|
186
|
+
i dasNov1.scaffold_23239 C 0 I 4
|
|
187
|
+
s loxAfr1.scaffold_36650 3880 627 + 16266 AGA------GAGCTTAATTGAACAAGGCTATGAAGCGCGTACACACCGCCCGTCACTCTCCT--CAAGTATCCCCACATCA-----AACAATCATA-TT---AC-AG--ATTTAAACA--AATAC-A---AGAGGAGACAAGTCGTAACAAGGTAAGCGTACTGGAAAGTGCGCTTGGATA--A-CTCAAAGTGTAGCT-TA-A--CAAAAAGCATCTGGCTTACACCTAGAAGAC---CTCATTTACAA--TGATCACTTTGA-AC--TAAAT-----CTAGCCCTA--C-CAA-CC----------CTACACTC--AA---------TTC-TCAT--ATTAT-----------ATTAAATCAAAACATT-CACTT--AC-----CAAAAAGTATAGGAGATAGAA-----AT-----TTC--ACTA-AGGCGCAATAGAG----ATAGTACCGCAAGGGAAT-GATGAAA-G--ATAGTTTAA------------TAGTAAAAAATAG-CAAGGATTAACCCCTTTACCTTTTGCATAATGAATTAACTAG-AAAA-ATCTGACAAAGAGAACTATAGCCAGAAACCCCGAAA-TCAGACGAGCTATCTGATAGTAATCC-----C--CA---GGATCAATTCATCTATGTGGCAAAATAGTGAAGAAACTTACAGATAGAGGTGAAATACCAATCGAGCCTGATGATAGCTGGTTGTCCA-GAAATA-GAATTTTAGTTCTACCTAAAA------C-------TTACCA------------------CAAA------AACAAA
|
|
188
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
189
|
+
s echTel1.scaffold_181343 131 630 + 18297 AGA------GTGCTCAGTTGAAACTGGCCATGAAGCGCGCACACACCGCCCGTCACCCTCCT--TA---ATTTATATATTATAAGTAACCTCCATA--A---AC-AGCTACTTATACA--CCCCA-T---AAAGGAGACAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGAAA--ACCTCAAAACGTAGCT-TA-A--T-AAAAGCATCTGGCCTACACCCAGAAGAT---TTCA-TGACAC--TGACCGTTTTGA-AC--TAAAT-----CTAGCCCAA--CTCAA-AT----------AGAAACTT--AA----------CC-AAAT--AAAAC-----------TTTAATATAAAACATT-TG-TA--GA-----CATAAAGTATAGGAGATAGAA---ATAT-----TCC--ATAG-ATGCGCTATAGAG----ATAGTACCGTAAGGGAAA-AATGAAA-G--ATAACTTAA------------TAGTACCAAAAAG-CAAAGCTTAAACCTTATACCTTTTGCATAATGAGTAAACTAG-AAAATTTTTGACAAAGGGAACTTTAGCCAAAAACCCCGAAA-CCAGACGAGCTACCCTAGAGCAATCT-----T-GTT---GGATCAACTCATCTATGTGGCAAAATAGTGAGAAGACTTTAAGGTAGAGGTGAAAAGCCAACCGAGCCTGGTGATAGCTGGTTGCCCA-AGAA-A-GAATTTAAGTTCGACCTAAAA------A-------TTACTA------------------CCAA------TA-ACt
|
|
190
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
191
|
+
s monDom4.chrUn 117152298 631 + 174229318 AGA------GTGCTTAATTGAATTAGGCAATAGGGCGCGCACACACCGCCCGTCACCCTCCT--CAACTC---------AA-CCTACAAAAATACT-TA---AT-AA-------TATA--TCTAA-GTAAAGAGGAGAAAAGTCGTAACACGGTAAGTGTACTGGAAAGTGCACTTGGAAT--A--TCAAAATGTAGCT-TA-ACTACTAAAGCATTTAGCTTACACCTAAAAGAT---TTCAGTTAATT-CTGACCATTTTGA-GC--CAATT-----ATAGCTCTA--A-CAA-TC----------TTCAAATA--AA---------CTATTTAT--ACACT------------TATATTTAAAACATT-TTAAT--TC------CCCTAGTATAGGAGATAGAACAGAAAC-----ATA--A----TGAAGCAATAACA----ATAGTACCGTAAGGGAAAAAATGAAA-G--ATAGATTGA------------TAGCATAAAAAAG-CAAAGATTAAACCTTGTACCTTTTGCATAATGATTTAGCCAG-TCAA-CATAGGCAAAAAGAATTTAAGCCTAGAACCCCGAAA-TTAAGTGAGCTACTATAGAACAGTTA-----TTTAT---GAACTTACTCCTCTATGTGGCAAAATAGTGAGAAGATTTTATAGTAGAAGTGAAAAACCTATCGAACTTAATGATAGCTGGTTATCCA-AAAT-ACGAATTTTAGTTCAACCTTAAG------T-------TTAACA------------------CAAAGCATACGA-TAT
|
|
192
|
+
i monDom4.chrUn C 0 C 0
|
|
193
|
+
s galGal2.chrM 2111 664 + 16775 ATACCCCCTAAGCTCACTTTAAGACGGCTCTGAGGCACGTACATACCGCCCGTCACCCTCTT--CACAAGCCATC----AA-CATCAATAAATATA-TA---CT-TCCCCTCCCGGCT--AA--------AGACGAGGCAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTAGACT--A--CCAAGGCGTAGCTATA-A-CTTCAAAGCATTCAGCTTACACCTGAAAGATACCCTCAACAGACA--AGGTCGCCTTGA-CT--TGCCCCCCCTCTAGCCCGA--C-AAA-CT----------CGTACCCT--TA---------ACA-TAAA--AAACT-TACCTCCCCCTCTTAACCAAAACATTATAAAT--TG------TCCCAGTATAGGCGATAGAA-----AA-----GAC--TACCCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAA-GATGAAA-T--AGCAATGAAAACCAT------AAGCAAAAAACAG-CAAAGACCAACCCTTGTACCTTTTGCATCATGATTTAGCAAG-AACA-ACCAAGCAAAGTGAGCTAAAGTTTGCCTTCCCGAAACCCAAGCGAGCTACTTGCGAGCAGCTA-----A--AATTTGAGCGAACCCGTCTCTGTTGCAAAAGAGCGGGATGACTTGCCAGTAGAGGTGAAAAGCCTACCGAGCTGGGTGATAGCTGGTTACCTG-TCAA-ACGAATCTAAGTTCCCCCTTAAC------C-------CACCCC------------------CTAA------AG-ACA
|
|
194
|
+
i galGal2.chrM C 0 I 23
|
|
195
|
+
s xenTro2.scaffold_18215 7 644 + 3330 AGA------GAGCTCTCTTTAA-ATGGCCCTGGGGCGCGCACACACCGCCCGTCACCCTTCTTCCAAAAACCACC----TA-CCTTAAATAAAACA-TT---AC-AA------AAACA--A---------AGAAGAGGCAAGTCGTAACATGGTAAGCGCACCGGAAGGTGCGCTTGGA------ATCAAAGTATAGCT-TA-A--CCTAAAGCCCCTCGCTTACACCGAGACGAT---ATCCGTTAAACCCAGATTACTTTGA-GCCATAAAC-----CTAGCCTTA--T-TAT-TT----------ACCAACAA--AAGATTACCCCCTA-CACCA-ACCCC------------ACCAACTAAACCATT-T---T--AA----ACTTTTAGTATAGGCGATAGAA-----AC-----AAG--TCT--AAGAGCTACATAT----CCAGTACCGCAAGGGAAA-GGTGAAA-T--AGAAATGAAACAAAT--AATAAAGCAACAAACAG-CAGAGAAAAACCCTCGTACCTTTTGCATAATGGTCTAGCAAG-TCCTAGTCAAGCAAAAAGAATTTAAGTTTGACCCCCCGAAA-CTAAGCGAGCTACTCCGAGACAGCTT-----T-TTA---GAGCCAACCCGTCTCTGTGGCAAAAGAGTGGGAAGATCTCCGAGTAGGGGTGACAGACCAAACGAGCTTAGTGATAGCTGGTTGCTCA-GGAA-ACGAATATAAGATCAACTCTAAG------TCCCGTTATTAGCA------------------AACA------AA-GCA
|
|
196
|
+
i xenTro2.scaffold_18215 N 0 C 0
|
|
197
|
+
s tetNig1.chrUn_random 103510618 674 + 171761319 AGA------GTGTCTTACTGAAACCGGCCATGAAGCGCGCACACACCGCCCGTCACTCTCCC--CAAAT----------CA-AACCCAC----CAA-TA---AT-TAATACACTATCA--CACACAA---AGGGGAGGCAAGTCGTAACATGGTAAGTGTACCGGAAGGTGCACTTGGAAA--A-ATCAGAATATAGCT-TAGA-TAGAAAAGCACCTCCCTTACACCGAGGAGCC---ACCCGTGCAAATCGGATTATTCTGACAC--CTAAT---AGCTAGCCCCT--C-CCC-CAAAAACAAAAAATAACTAT--TA---------ATA-CCCC--CTAATACACTTAATTAACCAAAACAAACCATT-TTTCC--CC-------CTAAGTATGGGCGACAGAA-----AAGGACCTAA---------GAGCTACAGAC----AAAGTACCGCAAGGGAAC-GCTGAAA-G--AGAAGTGAAACAACCCAGTTTAAGTACAAAAAAG-CAGAGATTAAACCTCGTACCTTTTGCATCATGATTTAGCCAG-CAAACCTTAGGCAAAGAGCACTTTAGTCTAATTCCCCGAAA-CTGGACGAGCTACTCCAAGACAGCCT-----TCATA---GGGCACATCCGTCTCTGTGGCAAAAGAGTGGAAAGAGCTTTGAGTAGAGGTGACAAACCTACCGAGCCCAGTAATAGCTGGTTGCCCG-AAAA-TTGAGTTTAAGCTCAGCTTTTTAGCTTCTT-------GCCTCACCAACAGTAAAAACACAA----------------
|
|
198
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
199
|
+
s danRer4.chrM 1817 657 + 16596 AGA------GTGTCTCTTTGAACCCGGCTCTAAGGCGCGTACACACCGCCCGTCACTCCCTC--C-GGT----------CA-ATTGCACAAG-AAA-TA---AT-TAATACAGAAGCA--CAGAC-A---AGGGGGGAAAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTGGACATTA-TCCAAGACGTGGCT-GA-A-CAGTTAAGCATCTCACTTACACCGAGAAAAC---ATCCGTGCAAATCGGATCGTCCTGA-GC--TAAAT---AGCTAGCTTAA--C-CAT-CAAGATCAACTTAAAAACAT--CA---------ATA-ACCT--ATAATCAACCTAAAACCACAAACTAAACCATT-ATATT--AT-------CCTAGTATGGGAGACAGAA-----AAGA---TAA--AATA-CTAAGCAATAGAG----AAAGTACCGCAAGGGAAC-GCTGAAA-G--AGAAATGAAATAACCC-GTAAAAGCAATAAAAAG-CAAAGATTAAACCTTGTACCTTTTGCATCATGATTTAGCCAA-C-ACCACTAGGCAAAGAGACCTTTAGTTTAAAGCCCCGAAT-CCAGGTGAGCTACCCCGAGACAGCCTATTTAACTTA---GGGCCAACCCGTCTCTGTGGCAATAGAGTGGGAAGAGCTCCGGGTAGAAGTGACAGACCTATCGAACCCGGCAATAGCTGGTTGTCTG-GGAG-ATGAATAAAAGTTCAGCTTCGTA------C-------ACCCCa----------------------------------
|
|
200
|
+
i danRer4.chrM C 0 I 27
|
|
201
|
+
|
|
202
|
+
a score=160222.000000
|
|
203
|
+
s mm8.chrM 1497 81 + 16299 CAAAATCAAA------AAGTAAG----TTTAGATTATAGCCAAAAGAGGGACAGCTCTTCTGGAA--CGGAAAAAACCTT-TAATAGTGAATAA---------
|
|
204
|
+
s oryCun1.scaffold_140182 1604 81 + 20791 AAAA-CCCTA------ATGAAAA----TTTAAATGTTACTCTAAAGAGGGACAGCTCTTTAGATA-TAGGACACAGCCTT-TTATAAAGAGTAA---------
|
|
205
|
+
i oryCun1.scaffold_140182 C 0 M 1789
|
|
206
|
+
s rn4.chrM 1494 81 + 16300 CAAA-TCAAA------ATGTAAA----CTTAAAATATAGCCAAAAGAGGGACAGCTCTTTAGGAA-ACGGAAAAAACCTT-AAATAGTGAATAA---------
|
|
207
|
+
i rn4.chrM C 0 C 0
|
|
208
|
+
s hg18.chrM 2072 82 + 16571 TAAA-TCCCC------TTGTAAA----TTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAGGAAAAAACCTT-GTAGAGAGAGTAA---------
|
|
209
|
+
i hg18.chrM I 2 C 0
|
|
210
|
+
s panTro2.chrM 1489 82 + 16554 TAAA-TCCCC------TTGTAAA----CTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTAGACACTAGGAAAAAACCTT-GTAAAGAGAGTAA---------
|
|
211
|
+
i panTro2.chrM I 2 C 0
|
|
212
|
+
s rheMac2.chr5 34437184 76 - 182086969 TTAA-TTTCC------CAGTAAG----TGTAACTA-------ACTAAGGGACAGCTCTTTAGACCCTAGGAAACAACCTTCCTACAGAGAGTAA---------
|
|
213
|
+
i rheMac2.chr5 I 1 C 0
|
|
214
|
+
s bosTau2.chrM 1865 79 + 16338 -AAA-CCCCA------CTGTAGC----TTTAAAAGTTAGTCTAAAAAGGTACAGCCTTTTAGAAA-C-GGATACAACCTT-GACTAGAGAGTAA---------
|
|
215
|
+
i bosTau2.chrM C 0 C 0
|
|
216
|
+
s canFam2.chrM 1494 81 + 16727 aaaa-tttta------atgtaaa----tttaaaatataGTCTAAGAAGGTACAGCTTCTTAGAAT-CAGGATACAACCTT-TATTAGAGAGTAT---------
|
|
217
|
+
i canFam2.chrM C 0 C 0
|
|
218
|
+
s dasNov1.scaffold_23239 5316 82 - 16977 TTAA-TCTTA------ATATAAG----TTTTAAATATACTCAATAGAGGTACAGCTCCATTGAAACAGGTATTAAACCTG-CACAGGAGAGTAA---------
|
|
219
|
+
i dasNov1.scaffold_23239 I 4 C 0
|
|
220
|
+
s loxAfr1.scaffold_36650 4507 81 + 16266 ATAA-TTCCA------ATGTAAG----TTTTAGAGATATTCAAAAGGGGTACAGCTCTTTTGACC-AAGGATACAACCTT-GATTAGCGAGTAA---------
|
|
221
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
222
|
+
s echTel1.scaffold_181343 761 81 + 18297 ataa-attta------atgtaat----ttttagttataattaaaaGAGGTACAGCTCTTTTAATT-GAGGAAACAACCTT-ATTTAGAGAGTAA---------
|
|
223
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
224
|
+
s monDom4.chrUn 117152929 81 + 174229318 CAAA-GCATA------TCTTAGA----CTTAATAGTTAATCAAATGAGGGACATCTCATTTGATA-AAGTGGACAAACTT-CATAAGAGGGTAA---------
|
|
225
|
+
i monDom4.chrUn C 0 C 0
|
|
226
|
+
s xenTro2.scaffold_18215 651 75 + 3330 AAA-----------------AACACTTCTTAGAATTTATTCAACCAGGGTACAGCCTGGTTGAAA-CAGGATACAACCTA-CAACTATGGGTAA---------
|
|
227
|
+
i xenTro2.scaffold_18215 C 0 I 10
|
|
228
|
+
s tetNig1.chrUn_random 103511292 89 + 171761319 ------CCGATTTA--AAGAAAC----TAAAAAAGTTAGTCAAAGGGGGTACAGCCCCTCTGACC-CAAGAAACAACTTT-CCCAGGAGAATAAGGATCCTAA
|
|
229
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
230
|
+
s danRer4.chrM 2501 91 + 16596 ------CAAAATTAAGAGAAAAA----TACGAAAGTTAGTTAAAGAGGGTACAGCCCCTTTAACA-AAGGATACAACCTT-TTCAGGAGAATAAAGATCATAA
|
|
231
|
+
i danRer4.chrM I 27 C 0
|
|
232
|
+
s galGal2.chrM 2798 72 + 16775 ----------------CGTTGGG----GTTAAGAGCAATTCGATGGGGGTACAGCTCCATCGAAA-AAGAACACAACCTC-CTCCAGCGGATAA---------
|
|
233
|
+
i galGal2.chrM I 23 C 0
|
|
234
|
+
|
|
235
|
+
a score=164919.000000
|
|
236
|
+
s mm8.chrM 1578 166 + 16299 TTAACAAAAC---------AGCTTTT--------------AACCAT-------TGTAGGCCTAAAAGCA-GCCACCAAT-AAAGAAAGCGTTCAAGCTCAACATAAAATTTCA-----ATTAATTCCA--TAA-------TTTACACCAA----------CT-TCCTAA-----ACT-TA-AAATTGGGTTAA-TCTATAACTTTATAGATGCAACACTGTTAGTATGAGT
|
|
237
|
+
s rn4.chrM 1575 163 + 16300 ACAACTACA----------ATCACTT--------------AACCAT-------TGTAGGCTTAAAAGCAAGCCATCAAT-AAAGAAAGCGT-CAAGCC--ACATCATCTTACACACACACTAATTCCA--CAA-------ACCTCAAAAA-----------T-TCCAAA-----ATT-AC-AAATTGGGCTAAATCTATGATCCTAGTGA----ATACTGTTAATATGTG-
|
|
238
|
+
i rn4.chrM C 0 C 0
|
|
239
|
+
s oryCun1.scaffold_116167 3974 163 + 15695 -------------------GTTATTTTC-----------AATCCAT-------AGTTGGCTTAAAAGCA-GCCATCAAT-TAAGAAAGCGTTAAAGCT---CAACAACTAAAA-----ACCAACTTAA--TAAGAATATTTTAAAACGAA----------CT-CTTATA-----AAC-CC-TAACTGGACTAA-TCTATAAATCTATAGAAGAAATAATGCTAATATAAGT
|
|
240
|
+
i oryCun1.scaffold_116167 n 0 C 0
|
|
241
|
+
s hg18.chrM 2154 159 + 16571 ------AAA----------ATTTAAC--------------ACCCAT-------AGTAGGCCTAAAAGCA-GCCACCAAT-TAAGAAAGCGTTCAAGCT---CAACACCC---------ACTACCTAAA--AAA-------TCCCAAACATATAAC---TGAA-CTCCTC-----ACA-CC-CAATTGGACCAA-TCTATCACCCTATAGAAGAACTAATGTTAGTATAAGT
|
|
242
|
+
i hg18.chrM C 0 C 0
|
|
243
|
+
s panTro2.chrM 1571 159 + 16554 ------AAA----------ATTTAAC--------------ACCCAT-------AGTAGGCCTAAAAGCA-GCCACCAAT-TAAGAAAGCGTTCAAGCT---CAACACCC---------ACAACCTTAA--AGA-------TCCCAAACATACAAC---CGAA-CTCCTT-----ACA-CC-CAATTGGACCAA-TCTATTACCCCATAGAAGAACTAATGTTAGTATAAGT
|
|
244
|
+
i panTro2.chrM C 0 C 0
|
|
245
|
+
s rheMac2.chr5 34437260 158 - 182086969 ------AAA----------ATATTAC--------------CACCAT-------AGATGGCCCAAAAGCA-ACCACCAGT-TAAGAAAGCATTTAAATT---CAACTTCT---A-----ACTATCTTCA----A-------TTCTAATCACTCTAC---TGTT-CTCCTA-----ACA-CC-ACATTGGACTAA-TCTATTATGTAATAGAAGCAATAATGTTAATATAAGT
|
|
246
|
+
i rheMac2.chr5 C 0 C 0
|
|
247
|
+
s bosTau2.chrM 1944 161 + 16338 ------AAT----------TTAACAC--------------TACCAT-------AGTAGGCCTAAAAGCA-GCCATCAAT-TAAGAAAGCGTTAAAGCT---CAACAACA---------AAAATTAAAT--AGA-------TTCCAACAACAAATG--ATTAA-CTCCTA-----GCC-CCAATACTGGACTAA-TCTATTATAGAATAGAAGCAATAATGTTAATATGAGT
|
|
248
|
+
i bosTau2.chrM C 0 C 0
|
|
249
|
+
s canFam2.chrM 1575 161 + 16727 ------ATA----------CTAATAT--------------CACCAT-------AGTTGGCTTAAAAGCA-GCCACCAAT-TGAGAAAGCGTTCCAGCT---CAACAAAC---------AATA-TAACT--TAA-------TCCCAACCATACTAC--ATCAA-CTCCTAATTATACC-CC----CTGGGTCAT-TCTATTTAAGTATAGAAGCAATAATGCTAGTATGAGT
|
|
250
|
+
i canFam2.chrM C 0 C 0
|
|
251
|
+
s dasNov1.scaffold_23239 5398 161 - 16977 --GCCGTAT----------AAAACAC--------------TTACAT-------AGTTGGCCTAAAAGCA-GCCATCAAT-AAAGAAAGCGTTAAAGCT---CAACAACA---------AAACAATGAC--AGA-------TACCAAAAAC-CACT--GCCAC-CTCCCA-----ACC-TA-ATACTGGGCCAA-TCTATA--TAAATAGAAGAGATAATGTTAGTATAAGT
|
|
252
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
253
|
+
s loxAfr1.scaffold_36650 4588 164 + 16266 ---------ATTCA-----CCATTAA--------------TTTCAT-------AGTTGGCTTAGAAGCA-GCCATCAAT-TAAGAAAGCGTTAAAGCT---CAACAACC---A-----ACCAAACTAAAAAGA-------TTCCAAA-ATTAATT-AATGAT-CTCCTA-----AACATA-ATACTGGACTAA-TCTAT--ATAAATAGAAGAAATAATGTTAGTATAAGT
|
|
254
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
255
|
+
s echTel1.scaffold_181343 842 159 + 18297 ---------ACAC------CAAATAA--------------TTTCAT-------AGTTGGCCTAAAAGCA-GCCACCAAT-TAAGACAGCGTTAAAGCT---CAACAATT---T-----ATTTCTCT----AGA-------TTCC----ATTAATTCAATTCTACTCCTA-----AAT-TT-ATATTGGGCAAA-TCTATTCTTATATAGAAGCTAATCTGTTAACATAAGT
|
|
256
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
257
|
+
s monDom4.chrUn 117153010 162 + 174229318 -------------TGACTTATTTTAA--------------CCCCAT-------CGTAGGCCTAAGAGCA-GCCACCAAT-TAAGAAAGCGTTAAAGCT---CAAACATA--GA-----ATTTTATTCA--ATA-------CCCTAAAACTATCAA-----AA-CCCCTA-----TAA-CA-ATATTGGATGAT-TCTATTAAACTATAGAAGACATAATGCTAAAATCAGT
|
|
258
|
+
i monDom4.chrUn C 0 C 0
|
|
259
|
+
s galGal2.chrM 2870 152 + 16775 -------------TAATCACCCCTCC--------------CCGCAC-------TGTGGGCCTTCAAGCA-GCCACCAACAAAAGAGTGCGTCAAAGCT---C----------------CCTCATTAAA--AAA-------TCTAAAACCCTATTT-----GA-CTCCCT-----CAA-CC-AAAGCAGGTTAA-CCTATGA--CAATAGAAGAATCAATGCTAAAATGAGT
|
|
260
|
+
i galGal2.chrM C 0 C 0
|
|
261
|
+
s xenTro2.scaffold_18215 736 160 + 3330 --------------------------TCGACAGGAAAATGAACCA---------GTGGGCCTAAAAGCA-GCCACCTGT-TAAGAAAGCGTCAAAGCT---CCCTCATA---------TACCTTCCGC--CAA-------TACCGACATCTCCTC----CGA-ACCCTT-----TTT-CC-GTACTGAGCTGT-TCAATTCTAATATTGAAGCACCTATGCTAGAACTAGT
|
|
262
|
+
i xenTro2.scaffold_18215 I 10 M 106
|
|
263
|
+
s tetNig1.chrUn_random 103511381 162 + 171761319 -------------------TAACAAA--------------GGCCATGTGTTTAGGTGGGCCTAAAAGCA-GCCACCC-T-ATTGAAAGCGTTAAAGCT---CAAACACA---------CCCCCGCCAC--TAA-------TACCGATAAATACAT---CCTA-ACCCCT-----GAC-CC-TTATCGGGCCTT-TCTATGCATACATAGAAGAGACTATGCTAATATGAGT
|
|
264
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
265
|
+
s danRer4.chrM 2592 163 + 16596 ------------------TTTACAAA--------------ACACGT-TGTCGTAGTGGGCCTGGAAGCA-GCCACCTAA-AAAGAAAGCGTTAAAGCT---CAGGTAAG---------AAGAAATTCA--TAA-------TTCTGACAATAATAT---CTTA-CTTCCC-----TAA-AA-ATACCAGACTAA-TCCATACAAATATGGAAGAAATTATGCTAAAATGAGT
|
|
266
|
+
i danRer4.chrM C 0 C 0
|
|
267
|
+
|
|
268
|
+
a score=-81423.000000
|
|
269
|
+
s mm8.chrM 1744 113 + 16299 AACAAGAA----TTCCAATTCTC---------------CA--GGCATACGCG-TATAACA----A---CTCGGATA-ACC--ATTGTTAGTTAATCAGACT------------ATAGGC-----A-------ATAATCACA-CTATA-AATAATCCACCTATAACTT-CT-CT---
|
|
270
|
+
s galGal2.chrM 3022 103 + 16775 AATCTGGA-----ACCTATCCTC---------------CTACGGCGTAAACT-TACATTA----A--------TAC-ATT--ATTAACAGAAC-TCAACTT------------ATACCC-----C--------CACACTAA-CAAGC-AAT-ACGTAT---TCCTCA-AT-CT---
|
|
271
|
+
i galGal2.chrM C 0 C 0
|
|
272
|
+
s monDom4.chrUn 117153172 110 + 174229318 AATAAGAA------CTCATTCTC---------------CT--TGCATAAGCC-TAAGTTA----GCCAACGGATTA-CCC--ACTAACACCTA-ACAAATAC----------AATATCT-----T--------TAATT-AA-CAACC-AGTGAATTAC---CCCAAT-AA-TT---
|
|
273
|
+
i monDom4.chrUn C 0 C 0
|
|
274
|
+
s echTel1.scaffold_181343 1001 107 + 18297 AACAAGAGA---ATAAATCTCTC---------------CC--CGCACAAGTA-TATATCA----G---AACGAATA-CTC--GCTGATAATTA-ACAACCT-----------AGTAATT----------------ATACAA-ACTCT-AGACTATTAT---ATTTAC-AC-TT---
|
|
275
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
276
|
+
s loxAfr1.scaffold_36650 4752 106 + 16266 AATAAGAA------GTATTTCTC---------------CC--TGCATAAGCT-TATATCA----G---GTCGGATG-CCC--GCTGATAGTTA-ACAACCG-----------AATAATT-----A---------GATACAA-AAATA-GAACCTTTAT---TATACC-AA-TT---
|
|
277
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
278
|
+
s dasNov1.scaffold_23239 5559 109 - 16977 AACAAGAA------TATTTTCTC---------------CG--TGCATAAGTG-TATATCA----G---ACCGGATAGACC--ACTGATAGTTA-ACA---------------AATAGGC-----ACCAAACTACCACCAAA-CAATA-ACAATGCCAT---ACACCT-----T---
|
|
279
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
280
|
+
s canFam2.chrM 1736 110 + 16727 AACAAGAA-----CCATTTTCTC---------------CC--CGCATAAGCT-TATATCA----G-GAACGGATAG-ACC--ACTGATAGTTA-ACAATCT-----------GATAATA-----T--------CAACCCAA-AAATG-AAATACTTAT---CCACCC-CA-TT---
|
|
281
|
+
i canFam2.chrM C 0 C 0
|
|
282
|
+
s bosTau2.chrM 2105 109 + 16338 AACAAGAA-----AAATTTTCTC---------------CT--TGCATAAGTC-TAAGTCA----G-TGCCTGATAA-TAC--TCTGACCACTA-ACAGTC------------AATAAAA-----A--------TAATCCAA-CAATA-AACAATTTAT---TGATTA-TA-CT---
|
|
283
|
+
i bosTau2.chrM C 0 C 0
|
|
284
|
+
s rheMac2.chr5 34437418 121 - 182086969 AACATGAA------GATATTCTCTATTACATAAGCTTACA-CTGCATAAGCC-TACATCA----G---AATAACCC------ACTAACAGTTA-ACAGCCT-----------AATATTA-----A--------TAAACGATATAATA-AGCACCCTAT---TATTTA-CA-CT---
|
|
285
|
+
i rheMac2.chr5 C 0 C 0
|
|
286
|
+
s panTro2.chrM 1730 109 + 16554 AACATGAA------AACATTCTC---------------CT-CCGCATAAGCC-TACATCA----G---ACCAAAAT-ATTAAACTGACAATTA-ACAGCCT-----------AATATCT-----A--------CAATCAAC-CAACA-AGC-CATTAT---TACCCC-CG-CT---
|
|
287
|
+
i panTro2.chrM C 0 C 0
|
|
288
|
+
s hg18.chrM 2313 109 + 16571 AACATGAA------AACATTCTC---------------CT-CCGCATAAGCC-TGCGTCA----G---ATCAAAAC-ACTGAACTGACAATTA-ACAGCCC-----------AATATCT-----A--------CAATCAAC-CAACA-AGT-CATTAT---TACCCT-CA-CT---
|
|
289
|
+
i hg18.chrM C 0 C 0
|
|
290
|
+
s oryCun1.scaffold_116167 4137 110 + 15695 AACAAGAA-----TACTATTCTC---------------CT--TGCACAAGCT-TATATCA----G---ATCGGATG-CCC--ACTGATAGTTA-ACAGCCCT----------AATAGAA-----A--------TAATCCAC-AAATT-AATAATCTAT---TAACTTTCA-CT---
|
|
291
|
+
i oryCun1.scaffold_116167 C 0 C 0
|
|
292
|
+
s rn4.chrM 1738 106 + 16300 AACAAGAA------CCAATCCAC---------------CA--AGCACAAGTGCTAAGACA----A---C-CGGATA-ACC--ATTGTTAATTA-TTGAATC------------ATAGGC-----A--------TAACCCAA-CAATAGAATTACCTATCCCTAACTC---------
|
|
293
|
+
i rn4.chrM C 0 C 0
|
|
294
|
+
s tetNig1.chrUn_random 103511543 130 + 171761319 AATAAG--GGGCCAGACCCCCTC---------------CA--AGCACAAGTG-TACATCG----G---AACGAACT-CGC--ACCGAAGACTA-ACGAACCCAACCAAAGAGGGCAATGAATATC--------AAACCAAA-CAACA-AGAAAAACAT---TCACAA-CC-CCACC
|
|
295
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
296
|
+
s danRer4.chrM 2755 127 + 16596 AACAAGAAGAACCTGTACTTCTC---------------CA--AGCACAAGTG-TAAGCCAAGTTG---GACAAAC----C--ATTGGCAATTA-ACGAGCCCAAACAAAGAGGGCAATG-----T--------GAGTTAAA-AACTG-AGAAAA--AT---CCACAA-CAGACATC
|
|
297
|
+
i danRer4.chrM C 0 C 0
|
|
298
|
+
e xenTro2.scaffold_18215 896 106 + 3330 M
|
|
299
|
+
|
|
300
|
+
a score=2385506.000000
|
|
301
|
+
s mm8.chrM 1857 323 + 16299 GTTAACCCAACACCGGAATGC---C-T----AAAGGAAAGATCCAAAAAGATAAAAGGAACTCGGCAAA--CAAGAACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACAAGT--ATTAGAGGCACTGCCTGCCCAGTGAC-TA---A-A-GTTTaacggccgcggtatcctgaccgtgcaaaggtagcataatcacttgttccttaattagggactagcatgaacggctaaacgagggtccaactgtctcttatctttaatcagtgaaattgacctttcagtgaagaggctgaaatataataataagacgagaagaccctatggagcttaaATT
|
|
302
|
+
s rn4.chrM 1844 320 + 16300 GTTAGCCCAACACAGGCGTGC---T-T----TAAGGAAAGTTTAAAAAAGT--AAAGGAACTCGGCAAA--CACGAACCCCGC-CTGTTTACCAAAAACATCTCCTCTAGC---ATAACAAGT--ATTAGTGGCATCGCCTGCCCAGTGAC-TA---A-A-GTTCCACGGCCGCGGTATCCCGACCGTGCAaaggtaggataatcacttgttccttaattagggactagaatgaatggctaaacgagggtccaaccgtctcttacttgcaatcagtgaaattgaccttccagtgaaggggcggactcataataa-aagacgagaagaccctatggagcttTAATT
|
|
303
|
+
i rn4.chrM C 0 C 0
|
|
304
|
+
s oryCun1.scaffold_116167 4247 324 + 15695 GTTAACCCAACACAGGAGTGC---TAT----ATAGGAAAGATTAAAAGAAGAAAAAGGAACTCGGCAAA--CCCTAACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACTAGT--ATTAGAGGCACTGCCTGCCCAGTGAC-GT---A-C-GTTCAACGGCCGCGGTATCCTGACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTGGGGACTAGCATGAATGGCAACACGAGGGTTAAACTGTCTCTTTCTTCCAATCAGTGAAATTGACCTCCCCGTGAAGAGGCGGGGATAAAATAATAAGACGAGAAGACCCTATGGAGCTTTAATT
|
|
305
|
+
i oryCun1.scaffold_116167 C 0 C 0
|
|
306
|
+
s hg18.chrM 2422 323 + 16571 GTCAACCCAACACAGGCATGC---T-CA---TAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAA--C-CTTACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATCACCAGT--ATTAGAGGCACCGCCTGCCCAGTGAC-AC---A-T-GTTTAACGGCCGCGGTACCCTAACCGTGCAaaggtagcataatcacttgttccttaaatagggacctgtatgaatggctccacgagggttcagctgtctcttacttttaaccagtgaaattgacctgcccgtgaagaggcgggcatgacacagcaagacgagaagaccctatggagctttaatt
|
|
307
|
+
i hg18.chrM C 0 C 0
|
|
308
|
+
s panTro2.chrM 1839 323 + 16554 GTTAACCCAACACAGGCATGC---C-CA---CAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAA--T-CTTACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACCAGT--ATTAGAGGCACCGCCTGCCCGGTGAC-AT---A-T-GTTTAACGGCCGCGGTACCCTAACCGTGCAaaggtagcataatcacttgttccttaaatagggacttgtatgaatggctccacgagggtttagctgtctcttactttcaaccagtgaaattgacctacccgtgaagaggcgggcataacataacaagacgagaagaccctatggagcttTAATT
|
|
309
|
+
i panTro2.chrM C 0 C 0
|
|
310
|
+
s rheMac2.chr5 34437539 315 - 182086969 GTTAACCCAACAAAGGCATGC---T-C----TAAGGAAAGTTTACAAAAAGTGAAAGGAACTCAGCAAA--T-CTTACCCTGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACCAGT--ATTAGAGGCACTGCCTGCCCAGTGAC-GT---A-T-GTTCAACAGCTGCCATATCCTGACCATGCAAAGGTAGCATAATCACTTGTTCCCTAAGTAGGCACTTGTATGAATTGCTACACGAGGGTTCATCAGTCTCTTACTTT-------TGAAATTGACCTATCCGTGAAGAGATGGATATAAACAAATAAGATGAGAAGACCCTATGGAGCTTTAATT
|
|
311
|
+
i rheMac2.chr5 C 0 I 384
|
|
312
|
+
s bosTau2.chrM 2214 324 + 16338 GTTAACCCAACACAGGAGTGC---A-TC---TAAGGAAAGATTAAAAGAAGTAAAAGGAACTCGGCAAA--CACAAACCCCGC-CTGTTTACCAAAAACATCACCTCCAGC---ATTCCCAGT--ATTGGAGGCATTGCCTGCCCAGTGAC-AA---C-T-GTTTAACGGCCGCGGTATCCTGACCGTGCAAAGGTAGCATAATCATTTGTTCTCTAAATAAGGACTTGTATGAATGGCCGCACGAGGGTTTTACTGTCTCTTACTTCCAATCAGTGAAATTGACCTTCCCGTGAAGAGGCGGGAATGCACAAATAAGACGAGAAGACCCTATGGAGCTTTACCT
|
|
313
|
+
i bosTau2.chrM C 0 C 0
|
|
314
|
+
s canFam2.chrM 1846 324 + 16727 GTTAACCCAACACAGGTATGC---A-TT---CAAGGAAAGATTAAAAGGAGTAAAAGGAACTCGGCAAA--CACAAACCCCGC-CTGTTTACCAAAAACATCACCTCCAGC---ATTTCTAGT--ATTGGAGGCACTGCCTGCCCGGTGAC-AC---T-T-GTTTAACGGCCGCGGTATCCTGACCGTGCAAAGGTAGCATAATCATTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTAACTGTCTCTTACTCCCAATCAGTGAAATTGACCTTCCCGTGAAGAGGCGGGAATACCACAATAAGACGAGAAGACCCTATGGAGCTTTAATT
|
|
315
|
+
i canFam2.chrM C 0 C 0
|
|
316
|
+
s dasNov1.scaffold_23239 5668 327 - 16977 GTTAATCCAACACAGGCATGC---A-TAACTAACGGAAAGATTTAAAGGAATAGAAGGAACTCGGCAAA--CACGAATCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACAATT--ATTAGAGGCACCGCCTGCCCAGTGAC-AC---A-C-GTTTAACGGCCGCGGTACCCTGACCGTGCAAAGGTAGCATAATCACTTGTTCTCTAATTAAGGACCCGTATGAATGGCTAAACGAGGTTTCTACTGTCTCCTATTCCCTATCAGTAAAATTGACCTTCCCGTGAAGAGGCGGGAATAATCATATAAGACGAGAAGACCCTGTGGAGCTTAAATT
|
|
317
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
318
|
+
s loxAfr1.scaffold_36650 4858 324 + 16266 GTTAACCCAACACAGGCATGC---T-T----AAGGGAAAGATTAAAAGAAGGAAAAGGAACTCGGCAAA--CACAAACCCCGC-CTGTTTACCAAAAACATCACCTCGAGC---ATTACTAGT--ATTCGAGGCACTGCCTGCCCAGTGAC-CA---AGC-GTTAAACGGCCGCGGTACTCTGACCGTGCAAAGGTAGCATAATCATTTGTTCCTTAATTAGGGACTTGTATGAACGGCCACACGAGGGTTTAACTGTCTCTTTCCTCTAATCAATGAAATTGACCTTCTCGTGAAGAGGCGAGAATAAACATATAAGACGAGAAGACCCTATGGAGCTTAAATT
|
|
319
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
320
|
+
s echTel1.scaffold_181343 1108 326 + 18297 GTTAACCCAACACAGGAGTGCACTC-T----AAAGGAAAGATAAAAAGAAGTAAAAGGAACTCGGCAAA--CTAAAATCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACTAGT--ATTGGAGGCACTGCCTGCCCAGTGAC-CC---A-T-GTTTAACGGCCGCGGTACTCTGACCGTGCAAAGGTAGCATAATCATTTGTTCTCTAAATAAGGACTTGTATGAATGGCAACACGAGGATTTAACTGTCTCTTACTTCTTATCAGTGAAATTGACCTCCCCGTGAAGAGGCGGGGATTAGAACATAAGACGAGAAGACCCTATGGAGCTTAAATT
|
|
321
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
322
|
+
s monDom4.chrUn 117153282 327 + 174229318 GTTAACCCAACACAGGCATGC---A-CTACTAAAGGACAGATTAAAAAGAATAAAAGGAACTCGGCAAA--CCAAAACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTTCAAGT--ATTAGAGGCACTGCCTGCCCAGTGAA-TT---A-A-TTTTaacggccgcggtatcctgaccgtgcaaaggtagcataatcacttgtctcctaaatagagacttgtatgaatggcaaaacgagggtttaactgtctctttttctcaatcaatgaaattgacctacccgtgcagaggcgggtataactttataagacgagaagaccctgtggagcttaaAAT
|
|
323
|
+
i monDom4.chrUn C 0 I 9
|
|
324
|
+
s galGal2.chrM 3125 327 + 16775 GTTAAGCCAACCCAGGAGCGC---C------CACAGGATGATTAAAACCTACAGAAGGAACTCGGCAAA--CCAAAGACCCGA-CTGTTTCCCAAAAACATAGCCTTCAGCT-AACAACAAGT--ATTGAAGGTGATGCCTGCCCAGTGAC-CCCCAA-A-GTTCAACGGCCGCGGTATCCTAACCGTGCGAAGGTAGCGCAATCAATTGTCCCGTAAATTGAGACTTGTATGAATGGCTAAACGAGGTCTTAACTGTCTCCTGTAGGTAATCTATGAAATTAGTATTCCCGTGCAAAAACGAGAATGTGAACATAAGACGAGAAGACCCTGTGGAACTTTAAAA
|
|
325
|
+
i galGal2.chrM C 0 C 0
|
|
326
|
+
s xenTro2.scaffold_18215 1002 327 + 3330 GTTAACCTAACACAAGAGCAT---T------TAAAGAAAGATTAAAAGATGCAGAAGGAACTCGGCAAA--AGTGAACCCCGCNCTGTTTACCAAAAACATCGCCTCTTGCCAAACAACACGT--ATAAGAGGTCCAGCCTGCCCAGTGACTAT---A-T-GTTCAACGGCCGCGGTATTCTGACCGTGCAAAGGTAGCGTAATCACTTGTCTTTTAAATAAAGACTGGTATGAATGGCACCACGAAGGTTCAACTGTCTCCTGCATCCAATCCATTAAACTGACCTCCCCGTGCAGAGGCGGGGATATTCCCATAAGACGAGAAGACCCTATGGAGCTTTAAAC
|
|
327
|
+
i xenTro2.scaffold_18215 M 106 C 0
|
|
328
|
+
s tetNig1.chrUn_random 103511673 329 + 171761319 GTTAACCCTACACTGGCGTGC---C-TA---ATTGGAAAGACTTAAAGAAAAAGAAGGAACTCGGCAAACCCATAAGCCTCGC-CTGTTTACCAAAAACATCGCCTCTTGC---AAAAACAATGAATAAGAGGTCCCGCCTGCCCTGTGAC-TA---T-ACGTTTAACGGCCGCGGTATTTTGACCGTGCAAAGGTAGCGCAATCACTTGTCCTTTAAATGGGGACCTGTATGAATGGCACGACGAGGGCTTAACTGTCTCCTTTTTCAAGTCAATGAAATTGATCTTTCCGTGCAGAAGCGGGAATAAAAACATAAGACGAGAAGACCCTATGGAGCTTTAGAC
|
|
329
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
330
|
+
s danRer4.chrM 2882 324 + 16596 GTTACCCCCACACTGGAGTGC---A-TA---TAAGGAAAGACTAAAAGAAAGGGAAGGAACTCGGCAAA--CACAAGCCTCGC-CTGTTTACCAAAAACATCGCCTCCTGA---CATCCCAAT--ATAGGAGGTCCAGCCTGCCCAGTGAC-AA---T-A-GTTTAACGGCCGCGGTATTTTGACCGTGCAAAGGTAGCGCAATCACTCGTCCTTTAAATAGGGACCTGTATGAATGGCCAAACGAGGGCTTAACTGTCTCCCCCATCAAGTCAGTGAAATTGATCTATCCGTGCAGAAGCGGATATAATAATACAAGACGAGAAGACCCTTTGGAGCTTAAGGT
|
|
331
|
+
i danRer4.chrM C 0 C 0
|
|
332
|
+
|
|
333
|
+
a score=-149774.000000
|
|
334
|
+
s mm8.chrM 2180 39 + 16299 ATATAACTT-A--TCTATTTAATTTATTAAACCT--AAT------GGCCC
|
|
335
|
+
s rn4.chrM 2164 37 + 16300 TACTAATTT-----CAATTTATATAAAAAAACCT--AAT------GGGCG
|
|
336
|
+
i rn4.chrM C 0 C 0
|
|
337
|
+
s oryCun1.scaffold_116167 4571 41 + 15695 ATTTAACCC-A--ACACTTCCTTTATTCTACTCTACAAT------GAGCC
|
|
338
|
+
i oryCun1.scaffold_116167 C 0 C 0
|
|
339
|
+
s panTro2.chrM 2162 37 + 16554 CATTAATGCAA--ACAAT---ACTTAACAAACCT--ACA------GGTCC
|
|
340
|
+
i panTro2.chrM C 0 I 2
|
|
341
|
+
s hg18.chrM 2745 37 + 16571 taTTAATGCAA--ACAGT---ACCTAACAAACCC--ACA------GGTCC
|
|
342
|
+
i hg18.chrM C 0 I 2
|
|
343
|
+
s bosTau2.chrM 2538 17 + 16338 -------------------------AACCAACCC--AAA------GAGAA
|
|
344
|
+
i bosTau2.chrM C 0 I 21
|
|
345
|
+
s canFam2.chrM 2170 23 + 16727 -------------------------AACTAACCC--AAACTTATGGATAC
|
|
346
|
+
i canFam2.chrM C 0 I 18
|
|
347
|
+
s dasNov1.scaffold_23239 5995 38 - 16977 AACTAGATC-A--GCAATATCAACATATCCATCA--ACA------GATA-
|
|
348
|
+
i dasNov1.scaffold_23239 C 0 I 1
|
|
349
|
+
s loxAfr1.scaffold_36650 5182 37 + 16266 AACTAATTTAA--TTGCT---AGCCTATAAATCT--ATA------AGATA
|
|
350
|
+
i loxAfr1.scaffold_36650 C 0 I 1
|
|
351
|
+
s echTel1.scaffold_181343 1434 35 + 18297 AA-TAACCCAA--TTGTT----TCTCACAAAACC--AAA------AGGCA
|
|
352
|
+
i echTel1.scaffold_181343 C 0 I 1
|
|
353
|
+
s monDom4.chrUn 117153618 28 + 174229318 AATTAATTTAT--ACTAT-----------ACCCT--AAG------GGAT-
|
|
354
|
+
i monDom4.chrUn I 9 C 0
|
|
355
|
+
s galGal2.chrM 3452 29 + 16775 -------------TCACGACCACCTTACAACCTT--ACA------CAGCC
|
|
356
|
+
i galGal2.chrM C 0 I 11
|
|
357
|
+
s xenTro2.scaffold_18215 1329 36 + 3330 ---TTACGGCA--ACTGCTAAACAATCCAACCCC--ACA------CGGG-
|
|
358
|
+
i xenTro2.scaffold_18215 C 0 I 4
|
|
359
|
+
s tetNig1.chrUn_random 103512002 26 + 171761319 -----ATAAAA--CAGATCACGTCAAACACCCT-----------------
|
|
360
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
361
|
+
s danRer4.chrM 3206 28 + 16596 -----ACAAGATTTAATTTACATCAAGCAAACC-----------------
|
|
362
|
+
i danRer4.chrM C 0 C 0
|
|
363
|
+
e rheMac2.chr5 34437854 384 - 182086969 I
|
|
364
|
+
|
|
365
|
+
a score=88545.000000
|
|
366
|
+
s mm8.chrM 2219 80 + 16299 ------------AAAA-------------ACTATAG---TATAAGT---T-TG-------AAATTTCGGTTGGGGTGACCTCGGAGAATAAAAAATCCTCC-----GAAT-----GA----------------TTATAACCTAGA
|
|
367
|
+
s rn4.chrM 2201 83 + 16300 ------------AAAACA-----------ACAAAAT---TATGAAC---TACC-------AAATTTCGGTTGGGGTGACCTCGGAGAATAAAAAATCCTCC-----GAAT-----GA----------------TTATAACCGAGT
|
|
368
|
+
i rn4.chrM C 0 C 0
|
|
369
|
+
s oryCun1.scaffold_116167 4612 83 + 15695 ------------TAACCA-----------AGGAAAT--CCCTGGGT---T-AA-------AAATTTTGGTTGGGGTGACCTCGGAGTATAAATCAACCTCC-----GAAT-----GA----------------TTTTAGCCTAGA
|
|
370
|
+
i oryCun1.scaffold_116167 C 0 C 0
|
|
371
|
+
s hg18.chrM 2784 79 + 16571 --------------AACT-----------ACCAAA----CCTGCAT---T-AA-------AAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCC-----GAGC-----AG----------------TACATGCTAAGA
|
|
372
|
+
i hg18.chrM I 2 C 0
|
|
373
|
+
s panTro2.chrM 2201 79 + 16554 --------------AACT-----------ATTAAA----CCTGCAT---T-AA-------AAATTTCGGTTGGGGCGACCTCGGAGCACAACCCAACCTCC-----GAGC-----AA----------------TACATGCTAAGA
|
|
374
|
+
i panTro2.chrM I 2 C 0
|
|
375
|
+
s rheMac2.chr5 34438238 81 - 182086969 --------------aaaa-----------aatata----tatatatatat-at-------atatGTTGGTT-GGGTGACCCCGGAGCATAATTCAACCTCC-----GAAC-----GA----------------CCTAAACTAAGA
|
|
376
|
+
i rheMac2.chr5 I 384 C 0
|
|
377
|
+
s bosTau2.chrM 2576 83 + 16338 --------------AACA-----------ACAATCT--CCATGAGT---T-GG-------TAGTTTCGGTTGGGGTGACCTCGGAGAATAAAAAATCCTCC-----GAGC-----GAT-----------T---TTAAAGACTAGA
|
|
378
|
+
i bosTau2.chrM I 21 C 0
|
|
379
|
+
s canFam2.chrM 2211 85 + 16727 --------------AACATAA-------CACCATTA--TTATGAGT---T-AG-------CAATTTAGGTTGGGGTGACCTCGGAATATAAAAAAACTCCC-----GAGT-----GA----------------TTAAAATTTAGA
|
|
380
|
+
i canFam2.chrM I 18 C 0
|
|
381
|
+
s dasNov1.scaffold_23239 6034 80 - 16977 ------------AAAACA-----------GAATGA----TATGAAC---T-AT-------TAATTTTGGTTGGGGTGACCTCGGAGCACAGCAAAACCTCC-----GAAT-----GA-----------------CAGCGCCAAGA
|
|
382
|
+
i dasNov1.scaffold_23239 I 1 C 0
|
|
383
|
+
s loxAfr1.scaffold_36650 5220 84 + 16266 --------------AACT-----------A-AACAG---CATGATAAATT-AA-------CAATTTTGGTTGGGGTGACCTCGGAGAAGAAAAAATCCTCC-----GAAC-----GAT-----------A---TTATAATTTAGA
|
|
384
|
+
i loxAfr1.scaffold_36650 I 1 I 1
|
|
385
|
+
s echTel1.scaffold_181343 1470 81 + 18297 --------------AACT-----------ATAACTA---TATGGAG-----AA-------AGATTTCGGTTGGGGTGACCTCGGAGCATAATTAAACCTCC-----GAAT-----GAT-----------A---TATACATCTAGA
|
|
386
|
+
i echTel1.scaffold_181343 I 1 M 388
|
|
387
|
+
s monDom4.chrUn 117153646 83 + 174229318 ------------------TAATCT----TACAAAAC--TTTTTAAG---C-TG-------AATTTTTGGTTGGGGTGACCTCGGAGCACAAGCAACCCTCC-----GAAT-----GA-----------------CATAACTAAGA
|
|
388
|
+
i monDom4.chrUn C 0 C 0
|
|
389
|
+
s galGal2.chrM 3492 96 + 16775 ---------------------ACCCACACATAAACC---CCTGGTC---G-AC-------ATTTTTCGGTTGGGGCGACCTTGGAGAAAAAAAAATCCTCC-----AAACCCACAGACCAC------AAC---TCTTCACTAAGA
|
|
390
|
+
i galGal2.chrM I 11 C 0
|
|
391
|
+
s xenTro2.scaffold_18215 1369 100 + 3330 ------------CAGACA-----------ATTAAGCAACAATGACC---T-AA-------AGTTTTCGGTTGGGGCGACCACGGAGAAAAAAAAATCCTCCTTGATGTAC-----GGGGCCT---TACCC---TCTTAACCAAGA
|
|
392
|
+
i xenTro2.scaffold_18215 I 4 C 0
|
|
393
|
+
s tetNig1.chrUn_random 103512028 111 + 171761319 TAGATAAAAGAACAAACT-----------------A---AGTGAGC---C-CTGTTCAAATGTCTTTGGTTGGGGCGACCGCGGGGTAACAAAAAACCCCC-----ATGT-----GGAATAAAAACACCCTTTTTAAAACCAAGA
|
|
394
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
395
|
+
s danRer4.chrM 3234 107 + 16596 AATAAAAGTGATTAAACT-----------AGTAAAA---GATAAAC---C-TC-------TACCTTCGGTTGGGGCGACCACGGAGTAAAAAACAACCTCC-----AAGC-----GGAACGGGCACAGCC---CTAAAACCAAGA
|
|
396
|
+
i danRer4.chrM C 0 C 0
|
|
397
|
+
|
|
398
|
+
a score=173589.000000
|
|
399
|
+
s mm8.chrM 2299 79 + 16299 CT---------TACAAGTCA---AAGTAAAATCAACATATCT------TATT------GACCCAGATA---TATTTTGATCAACGGACCAAGTTACCCTAGGGATA
|
|
400
|
+
s rn4.chrM 2284 84 + 16300 CGGTAACCGTGTCCGACCCAGTCAAGTAATACTAA--TATCT------TATT------GACCCAATTA---T----TGATCAACGGACCAAGTTACCCTAGGG-TA
|
|
401
|
+
i rn4.chrM C 0 C 0
|
|
402
|
+
s oryCun1.scaffold_116167 4695 76 + 15695 CC--------CAACAAGTCA---AAGCAATTATAA--TCATA------AATT------GACCCAAATA---A--TTTGATCAACGGAACAAGTTACCCTAGGGATA
|
|
403
|
+
i oryCun1.scaffold_116167 C 0 n 0
|
|
404
|
+
s hg18.chrM 2863 76 + 16571 CT--------TCACCAGTCA---AAGCGA-ACTACTATACTC------AATT------GATCCAA-TA---A--CTTGACCAACGGAACAAGTTACCCTAGGGATA
|
|
405
|
+
i hg18.chrM C 0 C 0
|
|
406
|
+
s panTro2.chrM 2280 76 + 16554 CC--------TCACCAGTCA---AAGCGA-ATTACTACATCC------AATT------GATCCAA-TG---A--CTTGACCAACGGAACAAGTTACCCTAGGGATA
|
|
407
|
+
i panTro2.chrM C 0 C 0
|
|
408
|
+
s rheMac2.chr5 34438319 74 - 182086969 CC--------ACACCAGTCT---ACGCGA-GTTAACACAC---------ATT------GGCCCAATTA---A--TTTGATCAATGGAGTAAGTTATCCTATGGATA
|
|
409
|
+
i rheMac2.chr5 C 0 C 0
|
|
410
|
+
s bosTau2.chrM 2659 72 + 16338 CC---------CACAAGTCA---AATCAC----TCTATCGCT------CATT------GATCCAA-AA---A--CTTGATCAACGGAACAAGTTACCCTAGGGATA
|
|
411
|
+
i bosTau2.chrM C 0 C 0
|
|
412
|
+
s canFam2.chrM 2296 74 + 16727 CC---------CACAAGTCA---AAATAC----AACATCACT------TATT------GATCCAA-TA---ATTTTTGATCAACGGAACAAGTTACCCTAGGGATA
|
|
413
|
+
i canFam2.chrM C 0 C 0
|
|
414
|
+
s dasNov1.scaffold_23239 6114 73 - 16977 CC---------AACCGGTCA---AAGCCC--ATAACGAAACC------AATT------GATCCAA--A---A--ATTGACCAACGGAACCAGTTACCCCAGGGATA
|
|
415
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
416
|
+
s loxAfr1.scaffold_36650 5305 72 + 16266 ---------TCTACAAGTCA---AAATTT-ACTAA--TCGCT------TATT------GACCCAA--T---A--CTTGATCAACGGAACAAGTTACCCTAGGGATA
|
|
417
|
+
i loxAfr1.scaffold_36650 I 1 C 0
|
|
418
|
+
s echTel1.scaffold_49882 2559 71 - 7170 ---------CCTACAAGTCG---CAATTA-A--AA--TCACT------TATT------GACCCAA-TT---A--CTTGAGCAACGGACCAAGTTACCCTAGGGATA
|
|
419
|
+
i echTel1.scaffold_49882 I 1561 C 0
|
|
420
|
+
s monDom4.chrUn 117153729 75 + 174229318 ---------CTAACACATCT---AAGTGCAACCTAAGCCAGT------AATT------GACCCAA--A---A--CTTGATCAACGGAACAAGTTACCCCAGGGATA
|
|
421
|
+
i monDom4.chrUn C 0 C 0
|
|
422
|
+
s galGal2.chrM 3588 72 + 16775 ---------CCAACTCCTCA---AAGTACCAACAG--TAACC------A---------GACCCAATAT---A--ATTGAGCAATGGACCAAGCTACCCCAGGGATA
|
|
423
|
+
i galGal2.chrM C 0 C 0
|
|
424
|
+
s xenTro2.scaffold_18215 1469 80 + 3330 ---------ACGACAGTTCT---AAGTAA---CAAAACATTTGACCACTATT------GATCCAGTCC---A--ACTGATCAACGAACCAAGTTACCCTAGGGATA
|
|
425
|
+
i xenTro2.scaffold_18215 C 0 C 0
|
|
426
|
+
s tetNig1.chrUn_random 103512139 79 + 171761319 ---------GCCACCGCTCT---AATGAA---CAGAACATCT------GACCAATCA-GATCCGGCCT---A--GCCGATCAACGAACCGAGTTACCCTAGGGATA
|
|
427
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
428
|
+
s danRer4.chrM 3341 83 + 16596 ---------GAAACATCTCT---AAGCCT---CAGAACACCT------GACCAAAGACGATCCGGCCTATAA--GCCGATCAACGAACCAAGTTACCCTAGGGATA
|
|
429
|
+
i danRer4.chrM C 0 C 0
|
|
430
|
+
|
|
431
|
+
a score=1521193.000000
|
|
432
|
+
s mm8.chrM 2378 161 + 16299 ACAGCGCAATCCTATTTAA-GAGTTCATATCGACAATTAGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCAATGGTGTAGAAGCTATTAATGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
|
|
433
|
+
s rn4.chrM 2368 153 + 16300 ACAGCGCGA-CCTATTTAA-GAGTTCATATCGACAATTAGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCAATGGTGCAGAAGCTATTAATGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTAAGTCCGG-------CAATCCAGGTCGGTT
|
|
434
|
+
i rn4.chrM C 0 C 0
|
|
435
|
+
s oryCun1.scaffold_205008 2 161 - 118789 ACAGCGCAATCCTATTTTA-GAGTCCCTATCGACAATAGCGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCAATGGTGTAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGAAATCCAGGTCGGTT
|
|
436
|
+
i oryCun1.scaffold_205008 n 0 C 0
|
|
437
|
+
s hg18.chrM 2939 160 + 16571 ACAGCGCAATCCTATTCTA-GAGTCCATATCAACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT
|
|
438
|
+
i hg18.chrM C 0 C 0
|
|
439
|
+
s panTro2.chrM 2356 160 + 16554 ACAGCGCAATCCTATTCCA-GAGTCCATATCAACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT
|
|
440
|
+
i panTro2.chrM C 0 C 0
|
|
441
|
+
s rheMac2.chr5 34438393 161 - 182086969 ACAACAAAATCCTATTCTAGGATTCCCTATTGGCAAT-AGGGTTTAC-AACCTCGATGTTGGATCAGGACATCCTAATGGTGTAGCTGCTATTAAGGGTTCATTTATTCAATGATTAA-AGTCCTACCTGATCTGAGTTCAGACCGGAGTAATCCAGGTTGGTT
|
|
442
|
+
i rheMac2.chr5 C 0 C 0
|
|
443
|
+
s bosTau2.chrM 2731 160 + 16338 ACAGCGCAATCCTATTCAA-GAGTCCATATCGACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTGATGGTGCAACCGCTATCAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT
|
|
444
|
+
i bosTau2.chrM C 0 C 0
|
|
445
|
+
s canFam2.chrM 2370 160 + 16727 ACAGCGCAATCCTATTCAA-GAGTCCATATCGACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCAGCTATTAAGGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT
|
|
446
|
+
i canFam2.chrM C 0 C 0
|
|
447
|
+
s dasNov1.scaffold_23239 6187 160 - 16977 ACAGCGCAATCCTATTCCA-GAGCCCATATCAACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACACCCAAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
|
|
448
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
449
|
+
s loxAfr1.scaffold_36650 5377 160 + 16266 ACAGCGCAATCCTACTCTA-GAGTCCCTATCGACAGC-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
|
|
450
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
451
|
+
s echTel1.scaffold_49882 2630 161 - 7170 ACAGCGCAATCCTATTTAA-GAGTTCATATCGACGAT-AGGGTTTACTGACCTCGATGTTGGATCAGGACACCCAGATGGTGCAACAGCTATCAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
|
|
452
|
+
i echTel1.scaffold_49882 C 0 I 1469
|
|
453
|
+
s monDom4.chrUn 117153804 161 + 174229318 ACAGCGCAATCCTATTTAA-GAGCCCATATCGACAATTAGGGTTTAC-GACCTCGATGTTGGATCAGGACACCCCAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGAAATCCAGGTCGGTT
|
|
454
|
+
i monDom4.chrUn C 0 C 0
|
|
455
|
+
s galGal2.chrM 3660 161 + 16775 ACAGCGCAATCTCCTCCAA-GAGCCCATATCGACAAG-GAGGTTTAC-GACCTCGATGTTGGATCAGGACAACCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAACAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
|
|
456
|
+
i galGal2.chrM C 0 C 0
|
|
457
|
+
s xenTro2.scaffold_18215 1549 160 + 3330 ACAGCGCAATCCATTTCGA-AAGTTCCTATCGACAAA-TGGGTTTAC-GACCTCGATGTTGGATCAGGGCATCCCAGTGGTGCAGCCGCTACTAAAGGTTCGTTTGTTCAACGATTAA-AGCCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCAGTT
|
|
458
|
+
i xenTro2.scaffold_18215 C 0 C 0
|
|
459
|
+
s tetNig1.chrUn_random 103512218 160 + 171761319 ACAGCGCAATCCTCTTTTA-GAGCCCATATCGACAAG-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCAGTT
|
|
460
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
461
|
+
s danRer4.chrM 3424 161 + 16596 ACAGCGCAATCCTCTCTAA-GAGTCCATATCGACGAG-GGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAATAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCAGTT
|
|
462
|
+
i danRer4.chrM C 0 C 0
|
|
463
|
+
|
|
464
|
+
a score=51271.000000
|
|
465
|
+
s mm8.chrM 2539 136 + 16299 TCTATCTATTTAC--G-ATTTCTCCC-AGT-ACGAAAGGACAAGAGAAATAGAGCC-ACCTTACAAATAAG-CG--CTCTCAACT----TAATTTATGAATAAAATCTAAAT--AAAA---TAT---ATACG---T-ACACCCTCT---AACCTAGAGA----AGGTT-
|
|
466
|
+
s rn4.chrM 2521 132 + 16300 TCTATCTATTTAC--A-ATTTCTCCC-AGTTACGAAAGGACAAGAGAAATGGAG---ACCAACCAATCCTA-GG--CTTCCAACC-----AATTTAG----AAAAACTTAAT--AAAG---TAT---ATATG---T-ACAATAAAT---AACCT-TAGACCC-AAGTT-
|
|
467
|
+
i rn4.chrM C 0 C 0
|
|
468
|
+
s oryCun1.scaffold_205008 163 136 - 118789 TCTATCTATTAAG--T-ATTTCTCCC-AGT-ACGAAAGGACAAGAGAAATAGAGCCTACTGCACCA--CAG-AG--CTCTAAGTC----CAAAAGATGAA-ATAATCTTAAT--CTAG---TAC---ACTTA---C-CCAACATAG---AGCCC-TAGACCA-GAGCT-
|
|
469
|
+
i oryCun1.scaffold_205008 C 0 C 0
|
|
470
|
+
s hg18.chrM 3099 129 + 16571 TCTATCTACTTCA--A-ATTCCTCCC-TGT-ACGAAAGGACAAGAGAAATAAGGCCTACTTCACAA---AG-CG-CCTTCCCCCG----TAAATGAT----ATCATCTCAAC--TTAGTATTAT---ACCCA---C-ACCCAC---------CC-AAGAACA-GGGT--
|
|
471
|
+
i hg18.chrM C 0 I 89
|
|
472
|
+
s panTro2.chrM 2516 117 + 16554 TCTATCTGTTCTA--A-ATTTCTCCC-TGT-ACGAAAGGACAAGAGAAATGAGGCCTACTTCACAA---AG-CG-CCTTCCCCAA----TAAATGAT----ATTATCTCAAT--TTAGCGCCAT---GCCAA---C-ACCCACT-------------------------
|
|
473
|
+
i panTro2.chrM C 0 I 92
|
|
474
|
+
s rheMac2.chr5 34438554 132 - 182086969 TCTATATATTTAA--T-ATTTCTCCT-AGT-ATGAAAGGACAAGAGAAATAGGGCCCACTTCATAA---AG-TGCCCTTGCCGCA----TAAATGAT----GCTATCTCTGT--CTAA---CAA---ACCAT---C-ACACACCCT---A-CCC-AGAAACA-GGGT--
|
|
475
|
+
i rheMac2.chr5 C 0 I 2
|
|
476
|
+
s bosTau2.chrM 2891 130 + 16338 TCTATCTATTACG--T-ATTTCTCCC-AGT-ACGAAAGGACAAGAGAAATAAGGCCAACTTTAAAT-CAAG-CG--CCTTAAGAC-----AACCAATGAT-AACATCTCAA---CTGA---CAA---CACAA---A-ACCCT--------GCCC-TAGAACA-GGGCT-
|
|
477
|
+
i bosTau2.chrM C 0 I 2
|
|
478
|
+
s canFam2.chrM 2530 138 + 16727 TCTATCTATTATA--CAACCTCCCCC-AGT-ACGAAAGGACAAGGGATGTAAGGCCTACCTCACAG--AGG-CG--CCTTAAAAC----TAATAGATGAA-GTCAACTCAAT--CTAA---CCA---GTTTA---T-CTCCTCATA---AGCCC-GAGAAAAGGGGCT-
|
|
479
|
+
i canFam2.chrM C 0 I 2
|
|
480
|
+
s dasNov1.scaffold_23239 6347 137 - 16977 TCTATCTATAACC--A-ATTTCTCCC-AGT-ACGAAAGGACAAGAGAAATAAGGCCAACTTTACAA-GAGG-CG-CCTTAAATCA----AAATAGATGAA-ATAATCTCAAC--CTAA---AAC---AT-TA---C-ATAAACATT---AGTCC-TAAGCCA-GGACC-
|
|
481
|
+
i dasNov1.scaffold_23239 C 0 I 2
|
|
482
|
+
s loxAfr1.scaffold_36650 5537 134 + 16266 TCTATCTATAGTT--T-ATTTATTCC-AGT-ACGAAAGGACAGAAAAAATGAGGCCAATCTTACCA---AGACG--CCTCCAGCT----AAATTTATGAA-TAAATCTCAAT--CTAG-----------ATAAGCT-AAACCACCC---AATCC-AAGAACA-GGATT-
|
|
483
|
+
i loxAfr1.scaffold_36650 C 0 I 1
|
|
484
|
+
s echTel1.scaffold_181343 1939 126 + 18297 TCTATCTATTTTA--T-ATCTCCTCCTAGT-ACGAAGGACCAGAGAGA---TAGCCACTTTCAACC---AG-CG--CCTTAA--C----AAACCAATGAT-ATAATCTTAAT--TTAC-----------CTA---T-ATCCATTTC---TGCTC-TAGATAA-GAGCT-
|
|
485
|
+
i echTel1.scaffold_181343 M 388 I 1
|
|
486
|
+
s monDom4.chrUn 117153965 135 + 174229318 TCTATCTATATAA--TAATTTCTCCT-AGT-ACGAAAGGACAAGAGAATTAAGGCCAACATTACAA--ACA-AG--CCTTACAAC----TAACTAATGAT-CTTATCTCAAT--TAGT---TAA---TGCAA---G-ATTTTATT-----ACTC-TAGAGAA-GAGTT-
|
|
487
|
+
i monDom4.chrUn C 0 C 0
|
|
488
|
+
s galGal2.chrM 3821 142 + 16775 TCTATCTATGGAC----ACTCCTCCT-AGT-ACGAAAGGACCGGAGAAGTGGGGTCAATACCACTG---AG-CA--CACCCCAACCTTCTAAGCAATGAA-TACAACTCAACTGCCAA---GAA---CCCCT---C-CCCCACACCCGAACTCC-TAGAAAA-GGAT--
|
|
489
|
+
i galGal2.chrM C 0 I 3
|
|
490
|
+
s xenTro2.scaffold_18215 1709 136 + 3330 TCTATCTATGCAG--T-ATTTTCTCT-AGT-ACGAAAGGACCGAGAAAATGAGGTCTATGTCACAA--ACA-AG--CCTCCTCCC----TTATCAATGAA-AACAACTTAAT--TGAA---TAA---AGGAC---T-AACAACTTC---AGCCC-AAGATAA-GGGCT-
|
|
491
|
+
i xenTro2.scaffold_18215 C 0 M 690
|
|
492
|
+
s tetNig1.chrUn_random 103512378 139 + 171761319 TCTATCTATGAAG-TG-CCCTTTTCT-AGT-ACGAAAGGACCGAAAAGGAGAGACCCCTGCCAAAA--GCA-CG--TCCCCCTCT----CACCCGTTGTC-TCCAACTAAAA--CAGA---CAA---GAGAG---CACACAACAAC---AGCCA-AAGAACA-TGACAT
|
|
493
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
494
|
+
s danRer4.chrM 3585 141 + 16596 TCTATCTGTAAAGCTA-TTTTTTCCT-AGT-ACGAAAGGATCGGAAAAAGGGGGCCCATACTAAAA--GCA-CG--CCCCACCCT----AAATTTATGAA-TAAAGATAAAA--AAAA---TAAAAGGAGAG---C-TAAAACCTC---TTCCC-GA-AATA-AGGGTT
|
|
495
|
+
i danRer4.chrM C 0 C 0
|
|
496
|
+
|
|
497
|
+
a score=312226.000000
|
|
498
|
+
s mm8.chrM 2675 76 + 16299 A-ttagggtggcagagccaggaaattgcgtaagacttaaaaccttgttcccagaggttcaaatcctctccctaa-ta--G
|
|
499
|
+
s rn4.chrM 2653 76 + 16300 A-ttagggtggcagagccaagtaattgcgtaagacttaaaaccttgttcccagaggttcaaatcctctccctaa-ta--G
|
|
500
|
+
i rn4.chrM C 0 C 0
|
|
501
|
+
s oryCun1.scaffold_205008 299 79 - 118789 Agttaaggtggcagagcccggtaattgcgtaaaacttaaaactttataaccagaggttcaactcctctccttaa-caATA
|
|
502
|
+
i oryCun1.scaffold_205008 C 0 C 0
|
|
503
|
+
s rheMac2.chr5 34438688 76 - 182086969 -gttaagatggaggagcttggtaattgcataaaacttaaaattttataataagaggttcaactcctcttcttaa-ca--A
|
|
504
|
+
i rheMac2.chr5 I 2 I 2
|
|
505
|
+
s bosTau2.chrM 3023 76 + 16338 -gttaaggtggcagagcccggtaattgcataaaacttaaacttttatatccagagattcaaatcctctccttaa-ca--A
|
|
506
|
+
i bosTau2.chrM I 2 I 2
|
|
507
|
+
s canFam2.chrM 2670 75 + 16727 -gttagggt-gcagggcccggtaactgcgtaaaacttaaacctttactatcagaggttcaattcctctccctaa-ca--A
|
|
508
|
+
i canFam2.chrM I 2 I 2
|
|
509
|
+
s dasNov1.scaffold_23239 6486 76 - 16977 -gttaagatggcagagacaggtaattgcataagacttaaacctttattaccagaggttcaaatcctcttcttaa-ca--t
|
|
510
|
+
i dasNov1.scaffold_23239 I 2 I 3
|
|
511
|
+
s loxAfr1.scaffold_36650 5672 76 + 16266 -gttaagatagcaaaaactggtcactgcataaaacttaagcttttactcacggaggttcaactcctcttcttaa-ca--A
|
|
512
|
+
i loxAfr1.scaffold_36650 I 1 C 0
|
|
513
|
+
s echTel1.scaffold_181343 2066 76 + 18297 -Attaagatggcagagcccggtaattgcacaagacttaaacccttgccgtcagaggttcaatccctcttcttaa-ta--A
|
|
514
|
+
i echTel1.scaffold_181343 I 1 C 0
|
|
515
|
+
s monDom4.chrUn 117154100 75 + 174229318 -Attaaggtggcagag-caggtaattgcataaaacttaagcctttactatcagaggttcaacccctctccttaa-ta--T
|
|
516
|
+
i monDom4.chrUn C 0 I 1
|
|
517
|
+
s galGal2.chrM 3966 75 + 16775 -GCTAGCGTGGCAGAGCTCGGCAAATGCAAAAGGCTTAAGCCCTT-TATCCAGAGGTTCAAATCCTCTCCCTAG-CT--A
|
|
518
|
+
i galGal2.chrM I 3 I 30
|
|
519
|
+
s tetNig1.chrUn_random 103512517 75 + 171761319 -gttagggtggcagagcccggtaaatgcaaaagacctaagcccttt-atacagaggttcaactcctctccttaa-cT--A
|
|
520
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
521
|
+
s danRer4.chrM 3726 77 + 16596 -GCTGGGATGGCAGAGCTCGGTAATTGCAAAAGGCCTAAGCCCTTTCACCCAAAGGTTCAAATCCTTTTCCCAGTTT--A
|
|
522
|
+
i danRer4.chrM C 0 C 0
|
|
523
|
+
e xenTro2.scaffold_18215 1845 690 + 3330 M
|
|
524
|
+
e panTro2.chrM 2633 92 + 16554 I
|
|
525
|
+
e hg18.chrM 3228 89 + 16571 I
|
|
526
|
+
|
|
527
|
+
a score=353365.000000
|
|
528
|
+
s mm8.chrM 2751 92 + 16299 ------------------TGTTCTTTATTAATATCCTAACACTCCTCGTCCCCATTCTAATC---GCCATAGCCTTCCTAACATTAGTAGAACGCAAAATCTTAGGGTACATA
|
|
529
|
+
s galGal2.chrM 4071 92 + 16775 ------------------ACCTTCTAATCATAACCTTATCCTATATTCTCCCCATCCTAATC---GCCGTGGCCTTCTTAACACTTGTAGAACGAAAAATCCTAAGCTACATG
|
|
530
|
+
i galGal2.chrM I 30 C 0
|
|
531
|
+
s monDom4.chrUn 117154176 92 + 174229318 ------------------TGTTCCTAATCAATCTACTAATCTATATTATTCCTATTCTACTA---GCAGTAGCTTTTTTAACATTAATCGAACGAAAAGTCCTAGGTTATATA
|
|
532
|
+
i monDom4.chrUn I 1 C 0
|
|
533
|
+
s echTel1.scaffold_181343 2142 92 + 18297 ------------------TGTTTATTATTAATCTCTTATCACTGATTGTTCCTATCCTCCTA---GCAGTAGCTTTCCTTACACTTCTTGAACGAAAAGTACTAGGATATATG
|
|
534
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
535
|
+
s loxAfr1.scaffold_36650 5748 92 + 16266 ------------------TGTTCTTAATCAATGTCCTAACAGTAACCTTACCTATCCTCCTA---GCAGTAGCCTTCCTTACCTTAGTTGAACGAAAGGCCTTAGGCTATATA
|
|
536
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
537
|
+
s dasNov1.scaffold_23239 6565 92 - 16977 ------------------TGTACTTAATCAATGTTCTATCTCTAATTATCCCAATTCTCCTA---GCAGTAGCCTTCCTAACGTTACTAGAACGAAAAATTCTAGGCTATATA
|
|
538
|
+
i dasNov1.scaffold_23239 I 3 C 0
|
|
539
|
+
s canFam2.chrM 2747 92 + 16727 ------------------TGTTCTTTATCAACATTATCTCTCTTATTATCCCAATCCTTCTT---GCCGTAGCCTTCCTCACCCTCGTTGAACGAAAAGTCTTAGGCTATATA
|
|
540
|
+
i canFam2.chrM I 2 C 0
|
|
541
|
+
s bosTau2.chrM 3101 92 + 16338 ------------------TGTTCATAATTAACATCTTAATACTAATTATTCCCATCCTATTG---GCCGTAGCATTCCTTACGTTAGTGGAACGAAAAGTTCTAGGCTATATA
|
|
542
|
+
i bosTau2.chrM I 2 C 0
|
|
543
|
+
s rheMac2.chr5 34438766 92 - 182086969 ------------------TGCCTTTAATTAACCTTCTCCTACTCATTATCCCCACTCTTATC---GCTATAGCGTTCCTTACACTCATCAAACGAAAAATCTTAGGCTATACA
|
|
544
|
+
i rheMac2.chr5 I 2 C 0
|
|
545
|
+
s hg18.chrM 3317 83 + 16571 ---------------------------CCAACCTCCTACTCCTCATTGTACCCATTCTAATC---GCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATA
|
|
546
|
+
i hg18.chrM I 89 C 0
|
|
547
|
+
s panTro2.chrM 2725 92 + 16554 ------------------CACCCATGACCAACCTCCTACTCCTCATTGTACCCATCCTAATC---GCAATAGCATTCCTAATGCTAACCGAACGAAAAATTCTAGGCTACATA
|
|
548
|
+
i panTro2.chrM I 92 C 0
|
|
549
|
+
s oryCun1.scaffold_205008 378 92 - 118789 ------------------TGTTCCTAATTAATACACT---CCTTTTAATCCTACCTGTACTTTTAGCCATAGCATTCCTCACCTTAGTCGAACGAAAAATCTTAGGGTACATA
|
|
550
|
+
i oryCun1.scaffold_205008 C 0 C 0
|
|
551
|
+
s rn4.chrM 2729 92 + 16300 ------------------TGTACTTTATTAATATCCTAACACTCCTAATCCCAATCTTAATT---GCCATAGGCCTTCTCACCCTAGTAGAACGGAAAATCCTAGGCTACATA
|
|
552
|
+
i rn4.chrM C 0 C 0
|
|
553
|
+
s tetNig1.chrUn_random 103512592 110 + 171761319 TGATTACAACCCTCATCACACACATCCTAAACCCTCTTGCCTTTATTGTCCCCGTCCTACTA---GCCGTCGCTTTTCTGACACTCCTAGAACGAAAAGTTCTAGGATACATA
|
|
554
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
555
|
+
s danRer4.chrM 3803 110 + 16596 TGCTAGACATCTTAACAAGCCACTTAATTAACCCCCTAGCCTACGCCGTACCAGTATTAATT---GCAGTAGCCTTCCTTACCTTAGTTGAACGAAAAGTGTTAGGCTATATA
|
|
556
|
+
i danRer4.chrM C 0 C 0
|
|
557
|
+
e xenTro2.scaffold_18215 1845 690 + 3330 M
|
|
558
|
+
|
|
559
|
+
a score=1741996.000000
|
|
560
|
+
s mm8.chrM 2843 346 + 16299 CAACTACGAAAAGGCCCTAACATTGTTGGTCCATACGGCATTTTACAACCATTTGCAGACGCCATAAAATTATTTATAAAAGAACCAATACGCCCTTTAACAAC-CTCTATATCCTTATTTATTATTGCACCTACCCTATCACTCACACTAGCATTAAGTCTATGAGTTCCCCTACCAAT---ACCACACCCA---TTAATTAATTTAAACCTAGGGATTTTATTTATTTTAGCAACATCTAGCCTATCAGTTTACTCCATTCTATGATCAGGATGAGCCTCAAACTCCAAATACTCACTATTCGGAGCTTTACGAGCCGTAGCCCAAACAATTTCATATGAAGTAACCATAG
|
|
561
|
+
s rn4.chrM 2821 346 + 16300 CAATTACGCAAAGGCCCCAACAACGAAGGCCCATATGGTAAACTACAACCATTTGCAGATGCCATAAAACTATTCATAAAAGAACCCATACGCCCTCTAACCAC-CTCAATATCACTATTTATTATCGCCCCAACCCTCTCCCTTACACTAGCTCTAAGCCTATGAATTCCCTTACCAAT---ACCCCACCCC---CTTATCAACCTCAACCTAGGCATACCATTTATTCTAGCCACATCCAGCCTTTCGGTCTACTCCATTCTATGATCGGGATGAGCCTCAAATTCAAAATACTCCCTATTCGGAGCCCTACGAGCCGTTGCCCAAACCATCTCTTACGAAGTCACAATAG
|
|
562
|
+
i rn4.chrM C 0 C 0
|
|
563
|
+
s oryCun1.scaffold_205008 470 347 - 118789 CAACTACGTAAAGGCCCAAACATTGTAGGACCCTATGGCCTCCTCCAACCAATCGCAGACGCTATTAAGCTATTCACTAAAGAACCCCTACGACCCCTAACATCGCTCTCCGCTACTCTTTATTATCGCCCCAACCCTAGCTCTAACTCTCGCACTATCAATGTGACTTCCTATCCCCAT---ACCTTACCCA---CTAGTCAACCTAAATATAGGCATTCTATTCATCCTAGCAACCTCCAGCTTAGCCGTTTACTCAATCCTATGATCAGGATGAGCATCCAACTCAAAATACGCCCTATTTGGTGCTCTCCGAGCAGTCGCACAAACCATTTCCTACGAAGTCACACTTG
|
|
564
|
+
i oryCun1.scaffold_205008 C 0 C 0
|
|
565
|
+
s panTro2.chrM 2817 346 + 16554 CAACTACGCAAAGGTCCCAACATTGTAGGTCCTTACGGGCTATTACAGCCCTTCGCTGACGCCATAAAACTCTTCACTAAAGAACCCTTAAAACCCTCCACTTC-AACCATTACCCTCTACATCACCGCCCCAACCCTAGCCCTCACCATTGCCCTCTTACTATGAACCCCCCTCCCCAT---ACCCAACCCC---CTAGTCAATCTTAACTTAGGCCTCCTATTTATTCTAGCCACCTCCAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCGAACTACGCCTTAATCGGTGCACTACGAGCAGTAGCCCAAACAATCTCATACGAAGTCACTCTAG
|
|
566
|
+
i panTro2.chrM C 0 C 0
|
|
567
|
+
s hg18.chrM 3400 346 + 16571 CAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCCCCTAAAACCCGCCACATC-TACCATCACCCTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTCTACTATGAACCCCCCTCCCCAT---ACCCAACCCC---CTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCTCATATGAAGTCACCCTAG
|
|
568
|
+
i hg18.chrM C 0 C 0
|
|
569
|
+
s rheMac2.chr5 34438858 346 - 182086969 CAACTATGCAGAAGACACAGAATTGTCGGTCTCGATGGGCTGCTTCAACCATTCGCTGATGCAATAAAACTTTTCACCAAAGAACCCTTACGGCCTTCAAAATC-TGCTATTACCCTTCACATTATTGCTTCAACACTAGCCTTTTCCATCACTCTCCTCTTATGAACTCCCCTCCCTAT---CCCAGACCCT---CTAATTAATTTTAACATAAGCCTCCTATTTATACTAGCCACATCAAGCCCAGCCGTCTCCTCTATTCTATGATCAGGATGAGCATCTAATTCAAATTATGCACTAATCAGCACATTACGAGCTGTGGCCCAAACAATTTCATATGAGGTCACCTTGG
|
|
570
|
+
i rheMac2.chr5 C 0 C 0
|
|
571
|
+
s bosTau2.chrM 3193 346 + 16338 CAACTCCGAAAAGGTCCAAATGTCGTAGGTCCATATGGCCTACTTCAACCCATCGCCGATGCAATCAAACTTTTCATTAAAGAACCACTACGACCCGCTACATC-TTCAGCCTCAATATTTATCCTAGCACCTATCATAGCTTTAGGCCTAGCCTTAACCATGTGAATTCCCCTACCAAT---ACCCTATCCT---CTTATCAACATAAACCTAGGAGTCCTATTTATACTAGCCATATCAAGCCTAGCCGTATACTCCATTCTCTGATCAGGCTGAGCTTCCAACTCAAAATACGCACTAATCGGAGCCCTACGAGCAGTAGCACAAACAATCTCATACGAAGTAACGCTAG
|
|
572
|
+
i bosTau2.chrM C 0 C 0
|
|
573
|
+
s canFam2.chrM 2839 346 + 16727 CAACTTCGAAAAGGACCTAATATTGTAGGCCCCTACGGCCTCCTTCAACCAATCGCAGACGCAGTAAAACTCTTCACAAAAGAACCTCTACGACCACTTACATC-CTCTATATCAATATTCATCCTAGCCCCCATTCTAGCTCTATCACTAGCCCTAACTATGTGAATTCCCCTCCCAAT---ACCCTACCCA---CTCATTAATATAAACTTGGGAGTCCTATTCATACTAGCAATATCAAGCCTCGCCGTGTACTCCATCCTCTGATCAGGATGAGCCTCAAACTCCAAATACGCCCTAATCGGAGCCCTTCGAGCAGTAGCTCAAACAATCTCATATGAAGTAACGCTAG
|
|
574
|
+
i canFam2.chrM C 0 C 0
|
|
575
|
+
s dasNov1.scaffold_23239 6657 346 - 16977 CAGTTACGTAAAGGCCCAAACATCGTAGGACCATACGGCCTACTACAACCAATCGCAGACGCCATTAAACTATTCATCAAAGAACCACTACGACCAGCCACATC-ATCAAAACTCATATTTACCTTAGCACCCACACTAGCACTAACTCTCGCACTTTCACTTTGAATCCCCATCCCAAT---ACCTTACCCA---TTGGTTAACTTAAATTTAGGGGTACTATTCATTTTAGCCATATCAAGCCTAGCTGTCTATTCAATCTTATGGTCAGGATGAGCATCAAACTCCAAATACGCCCTCATCGGAGCCCTTCGAGCAGTAGCACAAACAATTTCCTACGAAGTAACCCTGG
|
|
576
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
577
|
+
s loxAfr1.scaffold_36650 5840 346 + 16266 CAACTTCGTAAAGGTCCCAATGTAGTAGGACCTTACGGTCTTCTCCAACCTATTGCAGATGCAATCAAGCTATTTACTAAAGAACCCATCTACCCACAAACCTC-ATCAAAATTCCTATTTACCGTCGCCCCAATTCTAGCCCTAACCTTAGCCCTAACTGTATGAGCTCCTCTTCCAAT---ACCATATCCT---CTAATTAACTTAAATCTGAGCCTACTATTCATTCTCGCAATATCAAGTCTGATAGTTTATTCCATCCTATGATCAGGCTGAGCATCAAACTCAAAATATGCCCTCATAGGAGCCCTGCGAGCAGTAGCCCAAACCATCTCCTATGAAGTCTCTATAA
|
|
578
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
579
|
+
s echTel1.scaffold_181343 2234 346 + 18297 CAACTTCGTAAAGGCCCTAACGTTGTTGGCCCATATGGGCTCTTTCAACCATTTGCTGACGCAATCAAACTATTTACTAAAGAACCGCTACGCCCAATGACTTC-ATCTATAACTATATTTTTACTTGCCCCAATCCTAGCGCTATCCCTAGCTCTTACACTGTGGGTTCCTCTGCCAAT---ACCTCATTCC---CTTGTTAATCTTAACCTAAGCCTCTTATTCATCTTAGCCATATCTAGCCTAGCTGTCTACTCTATTCTATGATCAGGATGAGCATCTAACTCCAACTATGCTCTAATTGGCGCACTCCGAGCAGTCGCCCAAACAATCTCTTATGAAGTCTCTCTAG
|
|
580
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
581
|
+
s monDom4.chrUn 117154268 346 + 174229318 CAACTCCGAAAAGGCCCAAACGTTATTGGACCATACGGCATCCTACAGCCATTCGCAGACGCTGTAAAATTATTCACAAAAGAACCCCTCCGACCTCTAACTTC-ATCAATCTCAATATTTATTATTGCACCTATTTTAGCCCTAACCTTAGCTCTAACAATCTGAACCCCTCTACCTAT---ACCCCACACC---CTAATTGACTTAAACCTAGGACTTTTATTTATTTTATCCTTATCAGGACTATCAGTTTACTCAATTCTATGATCAGGATGAGCATCAAATTCTAAATATGCACTCATTGGAGCCTTACGAGCCGTAGCTCAAACAATTTCATACGAAGTCACATTAG
|
|
582
|
+
i monDom4.chrUn C 0 C 0
|
|
583
|
+
s galGal2.chrM 4163 346 + 16775 CAGGCCCGAAAGGGCCCAAACATTGTGGGCCCTTTTGGTCTACTCCAACCCGTTGCAGACGGGGTAAAACTATTCATTAAAGAGCCAATCCGACCATCTACCTC-CTCCCCCTTCCTCTTCATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTTGAGTCCCCCTCCCACT---ACCATTCCCC---CTTGCAGACCTCAACCTAGGACTACTATTTCTCCTAGCCATATCAAGCCTAACTGTCTACTCTCTACTCTGATCCGGATGAGCATCAAACTCCAAGTATGCCCTAATCGGAGCCCTTCGAGCCGTCGCACAAACAATCTCATACGAAGTCACCCTAG
|
|
584
|
+
i galGal2.chrM C 0 C 0
|
|
585
|
+
s xenTro2.scaffold_8452 11274 352 + 23823 CAAGTGCGCGTGGGCCCGAACCGCGTCGGCCCGCTGGGCCTGCTGCAACCGCTTGCCGATGGCCTGAAGCTCCTGACCAAGGAAATCATCACACCAACGGCGGC-CAGCAAGGGCCTGTTCTTCCTGGGGCCGGTGATGGCCATCATGCCGGCCCTGGCCGCCTGGGCGGCCATCCCCTTCGGCCCCGACGTCGTGCTGGCGAACGTGAATGCCGGGCTGCTGCTCATCATTGCCATCGCCTCGATCGAGGTCTATGGCGTCATCATCGCGGGCTGGGCGTCCAACTCCAAGTACGCCTTCCTGGGCGCACTGCGTGCCTCGGCGCAGATGGTGAGCTATGAAATCGCCATGG
|
|
586
|
+
i xenTro2.scaffold_8452 n 0 I 124
|
|
587
|
+
s tetNig1.chrUn_random 103512702 346 + 171761319 CAACTACGAAAAGGTCCAAACATCGTAGGCCCTTATGGCCTTCTCCAACCAATTGCAGACGGGGTAAAACTATTTATTAAAGAGCCCGTACGACCCTCAACCTC-CTCCCCAATCCTATTCATCCTCACCCCCATACTAGCCCTCACATTAGCCATAACACTATGAGCCCCCCTACCCCT---TCCATACCCA---GTCCTAGACCTAAACCTAGCCATCCTTTTCATTCTCGCCCTCTCTAGTCTCGCAGTGTATTCAATCCTCGGTTCCGGTTGAGCCTCAAACTCAAAATATGCCTTAGTAGGAGCCCTACGAGCCGTCGCACAAACCATCTCCTATGAAGTAAGCCTAG
|
|
588
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
589
|
+
s danRer4.chrM 3913 346 + 16596 CAACTCCGAAAAGGACCAAATGTAATAGGCCCCCGAGGACTGTTACAATCAGTAGCTGATGGCGTGAAACTTTTTATTAAAGAACCCATTCGACCATCTATGGC-TTCTCCAATTTTATTTTTAACAGCTCCAGTTCTTGCACTAATCCTAGCAATAATGCTATGGGCACCCATACCCAT---GCCCTATCCA---GTACTCGACCTAAATCTTGGAATTTTATTTATTATAGCCATCTCAAGCCTAGCAGTATACTCAATCCTGGGATCAGGTTGAGCATCAAACTCAAAATACGCATTAATTGGGGCCTTACGAGCTGTAGCGCAAACAATTTCATATGAAGTTAGCCTAG
|
|
590
|
+
i danRer4.chrM C 0 C 0
|
|
591
|
+
|
|
592
|
+
a score=274539.000000
|
|
593
|
+
s mm8.chrM 3189 85 + 16299 CTATTATCCTTTTATCAGTTCTATTAATAAATGGATCCTACTCTCTACAAACACTTATTACAACCCAAGAACACATATGATTACT
|
|
594
|
+
s galGal2.chrM 4509 85 + 16775 CCATCATCCTGTTATCCACAATCATACTGAGCGGCAATTACACCTTAAGCACCCTGGCCATCACCCAAGAGCCCATCTACCTCAT
|
|
595
|
+
i galGal2.chrM C 0 C 0
|
|
596
|
+
s monDom4.chrUn 117154614 85 + 174229318 CAATTATTCTGCTTTCAATTATACTAATTAATGGCTCCTTTACCCTAAAAAATTTAATAATTACCCAAGAAAATATATGATTAAT
|
|
597
|
+
i monDom4.chrUn C 0 C 0
|
|
598
|
+
s echTel1.scaffold_181343 2580 85 + 18297 CTATTATTCTGCTATCAGTAATATTATTTAATGGTTCATTCTCTTTGTCCTCCCTCACTATTACTCAAGAACATTTATGACTGCT
|
|
599
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
600
|
+
s loxAfr1.scaffold_36650 6186 85 + 16266 CAACTATCACCTTATCAATAGTACTAATAAATGGGTCCTTCACACTAACCGCCTTCGCTATAACACAAGAACATCTATGACTAAT
|
|
601
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
602
|
+
s dasNov1.scaffold_23239 7003 85 - 16977 CCATCATCTTACTATCAATCATAATAACAAATGGCTCATTCACCCTATCTACCCTAACAACAACACAAGAACACATATGACTAAT
|
|
603
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
604
|
+
s canFam2.chrM 3185 85 + 16727 CAATTATTCTTCTATCAGTCCTCCTAATAAACGGGTCATTTACACTATCCACGCTAATTATTACCCAAGAACATATATGATTAAT
|
|
605
|
+
i canFam2.chrM C 0 C 0
|
|
606
|
+
s bosTau2.chrM 3539 85 + 16338 CAATTATCCTGTTATCAGTACTCCTAATAAGTGGGTCCTTTACCCTCTCCACATTAATTACTACACAAGAACAAATATGGTTAAT
|
|
607
|
+
i bosTau2.chrM C 0 C 0
|
|
608
|
+
s rheMac2.chr5 34439204 85 - 182086969 CCATTATCCTGCTATCAGTTCTACTGATAAGCCGCTCGTTTAACTTATACAAACTCTTCACCATGCAAGAATTCCTCTGACTGCT
|
|
609
|
+
i rheMac2.chr5 C 0 C 0
|
|
610
|
+
s hg18.chrM 3746 85 + 16571 CCATCATTCTACTATCAACATTACTAATAAGTGGCTCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGATTACT
|
|
611
|
+
i hg18.chrM C 0 C 0
|
|
612
|
+
s panTro2.chrM 3163 85 + 16554 CCATTATCCTACTGTCAACGCTACTAATAAGTGGCTCCTTCAATCTCTCTACCCTTGTCACAACACAAGAGCACCTCTGACTAAT
|
|
613
|
+
i panTro2.chrM C 0 C 0
|
|
614
|
+
s oryCun1.scaffold_205008 817 85 - 118789 CAATTATCCTCCTATGCATCCTCCTAATAAATGGCTCATTTACATTATCATCCCTAATCACAACACAAGAATATATATGAATCCT
|
|
615
|
+
i oryCun1.scaffold_205008 C 0 C 0
|
|
616
|
+
s rn4.chrM 3167 85 + 16300 CCTTATACCTCTTATCCGTCCTCCTAATAAGCGGCTCCTTCTCCCTACAAATACTTATCACTACACAAGAACATATCTGACTATT
|
|
617
|
+
i rn4.chrM C 0 C 0
|
|
618
|
+
s tetNig1.chrUn_random 103513048 85 + 171761319 GCCTAATCCTACTCTCCCTAATTATCTTCACTGGGGGCTTCACACTACAAACCTTCAACACCGCCCAAGAAAGTATTTGACTTAT
|
|
619
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
620
|
+
s danRer4.chrM 4259 85 + 16596 GACTTATTCTATTATCTGCCGTTATTTTTTCTGGGGGATACACCCTACAAACATTTAATACAACTCAGGAAGACACATGACTTCT
|
|
621
|
+
i danRer4.chrM C 0 C 0
|
|
622
|
+
e xenTro2.scaffold_8452 11626 124 + 23823 I
|
|
623
|
+
|
|
624
|
+
a score=377866.000000
|
|
625
|
+
s mm8.chrM 3274 64 + 16299 TCTGCCAGCCTGACCCATAGCCATAATATGATTTATCTCAACCCTAGCAGAAACAAACCGGGCC
|
|
626
|
+
s rn4.chrM 3252 64 + 16300 AATCCCCGCCTGACCAATAGCCATAATATGATACATTTCAACCCTCGCAGAAACAAATCGAGCT
|
|
627
|
+
i rn4.chrM C 0 C 0
|
|
628
|
+
s oryCun1.scaffold_205008 902 64 - 118789 ACTACCAGCATGACCACTTGCCATAATATGATTTATCTCAACCCTAGCAGAAACCAACCGGGCT
|
|
629
|
+
i oryCun1.scaffold_205008 C 0 I 2359
|
|
630
|
+
s panTro2.chrM 3248 64 + 16554 CCTGCCAACATGACCCCTGGCCATAATATGATTTATCTCTACACTAGCAGAGACCAACCGAACT
|
|
631
|
+
i panTro2.chrM C 0 C 0
|
|
632
|
+
s hg18.chrM 3831 64 + 16571 CCTGCCATCATGACCCTTGGCCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAACC
|
|
633
|
+
i hg18.chrM C 0 C 0
|
|
634
|
+
s rheMac2.chr5 34439289 63 - 182086969 CCTACCATCATGGCCC-TAGCCATAACATGATTCATCTCCACACTAGCAGAAACTAACCGAGCC
|
|
635
|
+
i rheMac2.chr5 C 0 C 0
|
|
636
|
+
s bosTau2.chrM 3624 64 + 16338 CCTCCCAGCATGGCCTCTAGCAATAATATGATTTATCTCAACACTAGCAGAAACAAACCGAGCT
|
|
637
|
+
i bosTau2.chrM C 0 C 0
|
|
638
|
+
s canFam2.chrM 3270 64 + 16727 CTTTCCGGCCTGACCCCTAGCCATGATATGATTCATCTCTACCCTAGCAGAAACTAATCGAGCC
|
|
639
|
+
i canFam2.chrM C 0 C 0
|
|
640
|
+
s dasNov1.scaffold_23239 7088 64 - 16977 CTTTCCCCTCTGGCCACTAGCAATAATATGATTTATCTCCACACTAGCAGAAACCAATCGCGCC
|
|
641
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
642
|
+
s loxAfr1.scaffold_36650 6271 64 + 16266 CCTTCCTATATGACCCCTGATAATAATATGATTCACATCAACCTTAGCAGAAACTAACCGAGCC
|
|
643
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
644
|
+
s echTel1.scaffold_181343 2665 64 + 18297 AGTCCCCTCATGACCCCTAGCAATAATATGATTCATCTCAACACTAGCAGAAACTAACCGGGCC
|
|
645
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
646
|
+
s monDom4.chrUn 117154699 64 + 174229318 TATAACCGCATGACCTCTAACTATAATATGGTATATTTCTACATTAGCCGAGACAAACCGAGCT
|
|
647
|
+
i monDom4.chrUn C 0 C 0
|
|
648
|
+
s galGal2.chrM 4594 64 + 16775 TTTTTCCGCATGACCCCTCGCAATAATATGATACATCTCTACCCTTGCTGAAACCAACCGCGCC
|
|
649
|
+
i galGal2.chrM C 0 C 0
|
|
650
|
+
s xenTro2.scaffold_8452 11750 64 + 23823 GCTGCCGCTGCTGCCCATCTTCGTGGTCTACCTGATTTCCAGCGTGGCCGAAACCAACCGCCAC
|
|
651
|
+
i xenTro2.scaffold_8452 I 124 C 0
|
|
652
|
+
s tetNig1.chrUn_random 103513133 64 + 171761319 CATCCCAACCTGACCCCTTGCCGCAATATGATACATCTCCACCCTAGCAGAAACCAACCGAGCC
|
|
653
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
654
|
+
s danRer4.chrM 4344 64 + 16596 ACTTCCACTATGACCATTAGCCATTATATGATTTATCTCAACGCTGGCAGAAACAAACCGAGCA
|
|
655
|
+
i danRer4.chrM C 0 C 0
|
|
656
|
+
|
|
657
|
+
a score=1445299.000000
|
|
658
|
+
s mm8.chrM 3338 294 + 16299 CCCTTCGACCTGACAGAAGGAGAATCAGAATTAGTATCAGGGTTTAACGTAGAATACGCAGCCGGCCCATTCGCGTTATTCTTTATAGCAGAGTACACTAACATTATTCTAATAAACGCCCTAACAACTATTATCTTCCTAGGACCCCTATA--CTATATCAATTTACCAGAACTCTACTCA-------ACTAACTTCATAATAGAAGCTCTACTACTATCATCAACATTCCTATGGATCCGAGCATCTTATCCACGCTTCCGTTACGATCAACTTATACATCTTCTATGAAAAAACTTTCTA
|
|
659
|
+
s rn4.chrM 3316 294 + 16300 CCCTTCGACTTAACAGAAGGAGAATCAGAATTAGTCTCAGGCTTTAACGTCGAATACGCCGCAGGACCATTCGCCCTATTCTTCATAGCCGAGTACACCAACATTATTCTAATAAACGCCCTAACATCAATTGTATTCCTAGGCCCCTTATA--TCATATCAATTACCCTGAATTATACTCA-------ACCAGCTTCATAACAGAAACACTACTTCTATCCACAACTTTCCTATGGATTCGAGCATCCTACCCCCGTTTTCGATATGACCAACTAATGCACCTCCTATGAAAAAATTTCCTC
|
|
660
|
+
i rn4.chrM C 0 C 0
|
|
661
|
+
s oryCun1.scaffold_140182 3485 294 + 20791 CTCATTGACTTAACCGAAGGTGAATCAGAGCTCGTCTCCGGCTTCAATGTGGAGTACGCAGGAGGCCCCTTTGCTCTTTTCTTTTTAGCTGAATATACTAATATTATCCTTATAAATGCCCTTACAGCCATCCTATTCCTAGGCTCATTTCA--CAGCCACACTAACCCAGAAATATTTACA-------GTCAACTTTGCCACAAAGACTCTCCTACTCACAATAACATTTCTATGGATTCGAGCATCCTATCCCCGATTTCGCTATGACCAGCTAATACACCTCTTGTGAAAAAGTTTTCTA
|
|
662
|
+
i oryCun1.scaffold_140182 M 1789 C 0
|
|
663
|
+
s panTro2.chrM 3312 294 + 16554 CCCTTCGACCTTACTGAAGGAGAATCTGAACTAGTCTCAGGCTTTAATATCGAGTATGCCGCAGGCCCCTTTGCCCTATTTTTCATAGCCGAATACATAAACATTATTATAATAAACACCCTCACTGCTACAATCTTCCTAGGAGCAACATA--CAATACTCACTCCCCTGAACTCTACACG-------ACATATTTTGTCACCAAAGCTCTACTTCTAACCTCCCTGTTCCTATGAATTCGAACAGCATATCCCCGATTTCGCTACGACCAGCTCATACACCTCCTATGAAAAAACTTCCTA
|
|
664
|
+
i panTro2.chrM C 0 C 0
|
|
665
|
+
s hg18.chrM 3895 294 + 16571 CCCTTCGACCTTGCCGAAGGGGAGTCCGAACTAGTCTCAGGCTTCAACATCGAATACGCCGCAGGCCCCTTCGCCCTATTCTTCATAGCCGAATACACAAACATTATTATAATAAACACCCTCACCACTACAATCTTCCTAGGAACAACATA--TGACGCACTCTCCCCTGAACTCTACACA-------ACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAACAGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTA
|
|
666
|
+
i hg18.chrM C 0 C 0
|
|
667
|
+
s rheMac2.chr5 34439352 294 - 182086969 CCTTTTGATCTATCAGAAGGAGAGTCAGAGTTAGTCTCAGGCTTCAACATCGAATACGCCACAGGCTCATTTGTCCTCTTCTTTATAGCAGAATATATGAATATTATCATAATAAATGCCCTAACTACTGCTATTTTCATAGGAGTACTACA--CACTATATACTCACCAGAATTCTATACT-------ACAAATTTCATTACCAAGACCCTTCTTTTAACCACTCTATTTTTATGAATTTGAATGGCATACCCTCAATTCCACTGTGACCAACTCATACATCTTTTATGAAAAAACTTCCTA
|
|
668
|
+
i rheMac2.chr5 C 0 C 0
|
|
669
|
+
s bosTau2.chrM 3688 294 + 16338 CCATTTGATTTAACTGAAGGAGAATCAGAGCTAGTCTCGGGCTTCAACGTAGAATATGCAGCAGGACCATTTGCCCTCTTCTTCATAGCAGAGTACGCAAATATTATCATAATAAATATCTTTACAGCAATTTTATTCCTAGGAACATCCCA--CAATCCACACATACCAGAACTCTACACA-------ATCAATTTTACCATTAAATCCCTACTGCTCACAATATCCTTCCTATGAATCCGAGCATCCTACCCTCGATTTCGCTATGACCAACTAATACACTTACTATGAAAAAATTTTCTA
|
|
670
|
+
i bosTau2.chrM C 0 C 0
|
|
671
|
+
s canFam2.chrM 3334 294 + 16727 CCCTTCGACTTAACTGAAGGAGAATCCGAACTAGTCTCTGGATTTAACGTAGAGTATGCAGCAGGTCCTTTCGCCCTATTCTTTCTAGCAGAGTACGCAAATATTATTATAATAAACATCCTCACAACAATTCTGTTCTTCGGCGCATTCCA--CAACCCATTCATACCAGAACTCTACTCT-------ATTAACTTCACTATAAAAACCCTCTTATTAACCATCTGCTTCCTATGAATTCGAGCATCATACCCTCGATTCCGCTACGATCAGTTAATACACTTATTATGAAAAAATTTTCTA
|
|
672
|
+
i canFam2.chrM C 0 C 0
|
|
673
|
+
s dasNov1.scaffold_23239 7152 294 - 16977 CCATTCGACCTAACAGAAGGTGAATCAGAATTAGTGTCCGGATTCAACGTCGAATATGCAGCAGGGCCATTTGCCCTATTCTTTTTAGCTGAGTATGCCAACATCATTATAATAAATGCACTAACAGCCATTTTATTTTTTGGGGCCATACA--CAACCCAATATTCCCAGAACTACACACC-------CTAAACTTAATCACAAAAACCCTGATTCTTACTATAATATTTCTATGAGTACGCGCATCCTATCCACGATTCCGCTATGACCAACTAATACACCTCCTATGAAAAAGCTTTCTC
|
|
674
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
675
|
+
s loxAfr1.scaffold_36650 6335 294 + 16266 CCATTTGATTTAACCGAAGGAGAATCAGAATTAGTTTCTGGCTTCAATGTCGAATACTCAGCTGGCCCTTTCGCCCTATTTTTTATAGCTGAATACGCTAACATCATCATAATAAACGCTCTTACTGTGATTCTATTTATAGGAACCTCTTA--TGACCCCCAAATACCAGAAATTAGTACC-------ATTAACTTTGTCATAAAAACTATTATCCTAACCATCTGCTTTCTATGAGTACGAGCATCTTACCCACGATTCCGATACGACCAACTAATACATCTCCTCTGAAAAAATTTTCTC
|
|
676
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
677
|
+
s echTel1.scaffold_181343 2729 294 + 18297 CCATTTGACTTAACAGAAGGGGAATCAGAATTAGTTTCAGGCTTTAACGTTGAATATGCAGCAGGGCCCTTCGCTCTATTTTTCCTTGCAGAATACGCTAACATCATTATAATGAATGCTCTAACCACTATTCTATTTATAGGAGCATTTCA--TAATATATCTGTTACAGAAATTTACACG-------TTAAATTTTATTACAAAAACACTACTTCTCACTATACTATTTTTATGAGTTCGAGCATCATACCCTCGATTTCGATATGATCAACTAATACATTTATTATGAAAAAACTTCTTA
|
|
678
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
679
|
+
s monDom4.chrUn 117154763 294 + 174229318 CCTTTTGACCTGACAGAAGGAGAGTCGGAATTAGTCTCAGGTTTTAATGTGGAATATGCCGCTGGACCCTTCGCTATATTCTTTTTAGCAGAGTACGCCAACATTATAGCAATAAATGCCATAACAACAATTCTCTTCCTGGGGCCCCCCCT--AAACCACAACCACACTTATACCTGCACC-------ATTAGCTTCATATTCAAAACAATATTACTAACATCAGCCTTCCTATGAGTACGAGCATCATACCCTCGCTTTCGATATGATCAATTAATGTACTTATTATGAAAAAGCTTCCTC
|
|
680
|
+
i monDom4.chrUn C 0 C 0
|
|
681
|
+
s galGal2.chrM 4658 294 + 16775 CCATTTGACCTAACAGAAGGAGAGTCAGAGCTAGTCTCAGGATTTAATGTAGAATATGCCGCCGGACCATTCGCCATATTCTTCTTAGCCGAATACGCCAACATTATACTAATAAACACACTAACCACCGTCCTATTCCTGAACCCAAGCTT--CCTAAATCTCCCACCAGAATTATTTCCC-------ATTGCACTCGCTACAAAAACCCTCCTCCTTTCATCCTCATTTCTATGAATCCGGGCCTCATATCCACGGTTCCGCTATGACCAACTAATACATCTTCTATGAAAAAACTTCCTC
|
|
682
|
+
i galGal2.chrM C 0 C 0
|
|
683
|
+
s xenTro2.scaffold_8452 11814 303 + 23823 CCGTTCGACGTGGTCGAAGGCGAGGCCGAGATCGTGGCTGGTCATATGGTCGAGTATTCGGGCATGGGCTTCGCCATCTTCTTCCTGGCTGAATACGCCGCGATGTGGCTGGTTTCCATCCTGGCCGTGCTGATGTTCCTGGGCGGCTGGCTGCCACCGTTCGCGGCCCTGTCCTTCATCCCGGGCTGGATCTGGCTGGCGGCCAAGACCTTCCTGGTGGTCTCCATGTTCATCTGGATCCGTGCCACCTTCCCGCGCTACCGCTATGACCAGATCATGCGCCTGGGCTGGAAGATCTTCATC
|
|
684
|
+
i xenTro2.scaffold_8452 C 0 I 1675
|
|
685
|
+
s tetNig1.chrUn_random 103513197 294 + 171761319 CCATTTGATCTAACTGAAGGCGAGTCAGAACTAGTTTCTGGTTTTAACGTAGAATACGCAGGAGGCCCTTTCGCCCTATTCTTCCTCGCAGAATACGCCAACATCCTATTTATAAACACCCTTTCCGCCAGCCTCTTCCTAGGAGCCTCCCA--TATCCCAATACTTCCAGAACTGACCACA-------ATAAACCTAATAACCAAAGCAGCCGTCCTCTCACTCGTCTTCCTATGGGTACGAGCCTCCTACCCACGATTTCGCTATGACCAACTAATACACCTTATCTGAAAAAACTTCTTA
|
|
686
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
687
|
+
s danRer4.chrM 4408 294 + 16596 CCGTTCGATCTTACAGAGGGGGAATCAGAACTAGTCTCAGGCTTCAATGTAGAGTATGCAGCAGGACCATTTGCCTTATTCTTTTTGGCTGAGTACTCAAATATTTTACTAATAAACACCCACTCAACAGTACTATTTTTAGGAGCATCGTT--TACCCCAGATGCACCTGAGCTAATAACA-------ATCAGTATTGCAACCAAAACTGCAATACTATCTATTTTGTTTCTCTGAATACGAGCATCATACCCACGATTCCGATACGACCAACTTATGCATCTTATCTGGAAAAACTTTCTT
|
|
688
|
+
i danRer4.chrM C 0 C 0
|
|
689
|
+
|
|
690
|
+
a score=692934.000000
|
|
691
|
+
s mm8.chrM 3632 140 + 16299 CCCCTAACACTAGCATTATGTATGTGACATATTTCTTTACCAATTTTTACAGCGGGAGTACCACCATACATATA------GAAATATGTCTGA--T---AA--AAGAATTACTTTGATAGAGTAAATTATAGAGG-TTCA--AGCCCTCTTAT-TTc-
|
|
692
|
+
s rn4.chrM 3610 140 + 16300 CCACTAACACTAGCATTCTGCATATGATACATTTCCCTGCCAATTTTCCTAGCAGGAATTCCACCCTACACATA------GAAATATGTCTGA--C---AA--AAGAGTTACTTTGATAGAGTAAATAATAGAGG-TTTA--AATCCTCTTAT-TTc-
|
|
693
|
+
i rn4.chrM C 0 I 71
|
|
694
|
+
s oryCun1.scaffold_140182 3779 141 + 20791 CCCCTCACATTAGCCCTGTGCATATGACATATCTCAATACCTATCATACTTTCAAGTATCCCTCCTCAGATATA------GAAATATGTCTGA--T---AA--AAGAGTTACTTTGATAGAGTAAATAATAGAGGATCTT--AGCCCTCTTAT-TTc-
|
|
695
|
+
i oryCun1.scaffold_140182 C 0 I 77
|
|
696
|
+
s panTro2.chrM 3606 141 + 16554 CCACTCACCCTAGCATCACTCATGTGATATATCTCCATACCCACTACAATCTCCAGCATCCCCCCTCAAACCTAA-----GAAATATGTCTGA--T---AA--AAGAATTACTTTGATAGAGTAAATAATAGGAG-TTCA--AATCCCCTTAT-TTc-
|
|
697
|
+
i panTro2.chrM C 0 I 70
|
|
698
|
+
s hg18.chrM 4189 141 + 16571 CCACTCACCCTAGCATTACTTATATGATATGTCTCCATACCCATTACAATCTCCAGCATTCCCCCTCAAACCTAA-----GAAATATGTCTGA--T---AA--AAGAGTTACTTTGATAGAGTAAATAATAGGAG-CTTA--AACCCCCTTAT-TTc-
|
|
699
|
+
i hg18.chrM C 0 I 70
|
|
700
|
+
s rheMac2.chr5 34439646 136 - 182086969 CCACTTACACTAGCATTTTGC-----ATATATCTCAATGCTTGTCCTAATTTCCACCATCCCACCCTAAACATAG-----GCAATATGTCAGA--C---AA--AAGAATTACTTTGATAGAGTAAACAATAGAGA-TTAA--AATCCTCTGAT-TTc-
|
|
701
|
+
i rheMac2.chr5 C 0 I 71
|
|
702
|
+
s bosTau2.chrM 3982 141 + 16338 CCTCTGACACTAGCCCTGTGCATGTGACACGTATCCCTACCCATCCTTACATCAGGCATCCCACCACAAACATAA-----GAAATATGTCTGA--C---AA--AAGAGTTACTTTGATAGAGTAAATAATAGAGG-TTCA--AACCCTCTTAT-TTc-
|
|
703
|
+
i bosTau2.chrM C 0 I 71
|
|
704
|
+
s canFam2.chrM 3628 141 + 16727 CCCTTAACTTTAGCCCTATGCATATGACATGTTGCCTTACCCATTATCACCGCAAGTATCCCACCCCAAACATAA-----GAAATATGTCTGA--T---AA--AAGAGTTACTTTGATAGAGTAAATAATAGAGG-TTTA--AATCCTCTTAT-TTc-
|
|
705
|
+
i canFam2.chrM C 0 I 72
|
|
706
|
+
s dasNov1.scaffold_23239 7446 140 - 16977 CCACTTACATTAGCATTATGTATACTCCACGTATCAGCCCCAGCAACATTCGCAGGCGTACCCCCACACATATA------GGAATATGTCTGA--T---AA--AAGAATTACTTTGATAGAGTAAATAATAGAGG-TTTG--AACCCTCTTAT-TCc-
|
|
707
|
+
i dasNov1.scaffold_23239 C 0 I 72
|
|
708
|
+
s loxAfr1.scaffold_36650 6629 140 + 16266 CCACTAACTCTAGCTCTATGCATATGACACATCTCAGTCCTAATCTCACTAGCATGTATTCCACCACAAGCATA------GAAATATGTCTGA--C---AA--AAGAATTACTTTGATAGAGTAAATTATAGAGG-TCTG--AACCCTCTTAT-TTc-
|
|
709
|
+
i loxAfr1.scaffold_36650 C 0 I 71
|
|
710
|
+
s echTel1.scaffold_181343 3023 140 + 18297 CCAATAACCTTAGCCCTATGCATATGATACATCTCCATTCCTGTCATATTAGCTAGTATTCCCCCTCAAATATA------GAAACATGTCTGA--T---AA--AAGAGTTACTTTGATGGAGTAAATAATAGAGG-TTTA--AATCCCCTTGT-TTc-
|
|
711
|
+
i echTel1.scaffold_181343 C 0 I 67
|
|
712
|
+
s monDom4.chrUn 117155057 141 + 174229318 CCAATTACCCTAGCACTATGTCTAATATTTATCTCTATTCCAATTGCACTATCAAGTATCCCACCACAAATATAA-----GAAATATGTCTGA--C---AA--AAGAATTATCTTGATAGGATAAATAATAGGGG-TTCA--AACCCCCTTAT-TTc-
|
|
713
|
+
i monDom4.chrUn C 0 I 70
|
|
714
|
+
s galGal2.chrM 4952 142 + 16775 CCCCTAACCCTAGCCTTATGCCTCTGACATACCAGCATACCAATCAGCTACGCCGGCCTCCCCCC---AATCTAAG----GAAGCGTGCCTGAACA---AA--AAGGATCACTATGATAAAGTGAAC-ATAGAGG-TATAACAACCCTCTCAC-TTC-
|
|
715
|
+
i galGal2.chrM C 0 I 75
|
|
716
|
+
s xenTro2.scaffold_18215 2547 143 + 3330 CCAATCACACTAGCAATAACACTATGACACATCTCCTTACCAATCTCTCTATCAGGCCTACCACCTCAGATATAG-----GAAACGTGCCCGA--A---AGTTAGGGATCACTNTGATAGAGTGAAACATAGGGG-TTCA--AACCCCCTCGT-CTC-
|
|
717
|
+
i xenTro2.scaffold_18215 M 690 I 2
|
|
718
|
+
s tetNig1.chrUn_random 103513491 148 + 171761319 CCCCTAACATTAGCACTTGTTATCTGACACCTGGCACTCCCAATCACATTTGCAGGCCTCCCGCCTCAAATATAGC-CAGGAGCTGTGCCTGA--AT--TA--AAGGGCCACTTTGATAGAGTGAACCATGGGGG-TTAA--ATTCCCCCCAGCTCCT
|
|
719
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
720
|
+
s danRer4.chrM 4702 150 + 16596 CCAATCACATTAGTTCTAGTACTATGACATATCGCCCTACCAATCGCACTAGCTGGTCTACCCCCACAAACATAACTCAAGAACCGTGCCCGA--ATGCTA--AGGGGTCACTTTGATGGAGTGAACCATAGGGG-TTAA--AATCCCCTCGG-TTCT
|
|
721
|
+
i danRer4.chrM C 0 C 0
|
|
722
|
+
|
|
723
|
+
a score=14911.000000
|
|
724
|
+
s mm8.chrM 3772 70 + 16299 taggacaataggaattgaacctacacttaag-----------aattcaaaattctccgtgctacctaaacaccttatccta
|
|
725
|
+
s xenTro2.scaffold_18215 2692 70 + 3330 TAGAAAGACAGGAATTGAACCTGCACCTGAG-----------AGATCAAAACCCTCCGTACTCCCACTATACCACTCTCTA
|
|
726
|
+
i xenTro2.scaffold_18215 I 2 C 0
|
|
727
|
+
s tetNig1.chrUn_random 103513639 70 + 171761319 TAGAAAGAAGGGACTCGAACCCAACCCAGAGAGATCAAAACT-----------CTCAGTGCTTCCACTACACCACTTTCTA
|
|
728
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
729
|
+
s danRer4.chrM 4852 70 + 16596 TAGAAAGAAGGGGGTCGAACCCATGCCCAAG-----------AGATCAAAACTCTTAGTGCTTCCACTACACCACTTTCTA
|
|
730
|
+
i danRer4.chrM C 0 C 0
|
|
731
|
+
e monDom4.chrUn 117155198 70 + 174229318 I
|
|
732
|
+
e echTel1.scaffold_181343 3163 67 + 18297 I
|
|
733
|
+
e loxAfr1.scaffold_36650 6769 71 + 16266 I
|
|
734
|
+
e dasNov1.scaffold_23239 7586 72 - 16977 I
|
|
735
|
+
e canFam2.chrM 3769 72 + 16727 I
|
|
736
|
+
e bosTau2.chrM 4123 71 + 16338 I
|
|
737
|
+
e rheMac2.chr5 34439782 71 - 182086969 I
|
|
738
|
+
e panTro2.chrM 3747 70 + 16554 I
|
|
739
|
+
e hg18.chrM 4330 70 + 16571 I
|
|
740
|
+
e rn4.chrM 3750 71 + 16300 I
|
|
741
|
+
e oryCun1.scaffold_140182 3920 77 + 20791 I
|
|
742
|
+
e galGal2.chrM 5094 75 + 16775 I
|
|
743
|
+
|
|
744
|
+
a score=791168.000000
|
|
745
|
+
s mm8.chrM 3842 168 + 16299 ATAG--TAAGGTCAGCT-AA-T-TAAGCTATCGGGCCCATACCCCGAAAACGTTGGTTTAAATCCTTCCCGTACTAATAAATCCTATCACCCTTGCCATCATCTACTTCA--CAATCTTCTTAGGTCCTGTAATCACAATATCCAGCACCAACCTAATACTAATATGAGTAGGCC
|
|
746
|
+
s rn4.chrM 3821 167 + 16300 ATAG--TAAGGTCAGCT-AA-C-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTT-AAACCCTTCCCGTACTAATAAATCCAATTACCCTAACCATTATTTACTTAA--CCACCTTTAAAGGCCGCCTAATCACGACACTTAGCACCAACTTACCACCAATATGAGTAGGAT
|
|
747
|
+
i rn4.chrM I 71 C 0
|
|
748
|
+
s oryCun1.scaffold_140182 3997 168 + 20791 TAAG--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTATATCCTTCCCGTACTAATTAACCCCCTAACTCTTATTATTATTATATTTA--CTCTATTTATAGGCACGATAATCACAGTATTTAGCTCCCACTGACTAACTATATGAATCGGAT
|
|
749
|
+
i oryCun1.scaffold_140182 I 77 C 0
|
|
750
|
+
s hg18.chrM 4400 167 + 16571 aAAG--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTT-ATACCCTTCCCGTACTAATTAATCCCCTGGCCCAACCCGTCATCTACTCTA--CCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTTACCTGAGTAGGCC
|
|
751
|
+
i hg18.chrM I 70 C 0
|
|
752
|
+
s panTro2.chrM 3817 167 + 16554 aAAG--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTT-ACACCCTTCCCGTACTAATTAATCCCCTAGCCCAACCCATCATCTACTCTA--CCATCCTTACAGGCACGCTCATTACAGCGCTAAGCTCACACTGATTTTTCACCTGAGTAGGCC
|
|
753
|
+
i panTro2.chrM I 70 C 0
|
|
754
|
+
s rheMac2.chr5 34439853 160 - 182086969 -GAT--TAAGGTCAGCT-AA-A-TAAGCTATTGGGCCCATACACCGAAAATGTTGGTT-ATACCCTTCCCGTAC--------CCCTTAGCTCAACTTATTATTTCCCTCAGCCCATTTTCACAGGAACTCATATCACAATGCTATGCTCACACTGATTTCTAATCTGAACAGGGC
|
|
755
|
+
i rheMac2.chr5 I 71 C 0
|
|
756
|
+
s bosTau2.chrM 4194 168 + 16338 TTAG--TAAGGTCAGCT-AA-T-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTATATCCTTCCCGTACTAATAAACCCAATTATCTTTATTATTATTCTACTAA--CCATTATACTAGGAACTATTATTGTCATAATCAGTTCTCACTGACTACTTGTCTGAATCGGGT
|
|
757
|
+
i bosTau2.chrM I 71 C 0
|
|
758
|
+
s canFam2.chrM 3841 169 + 16727 aCAG--TAAGGTCAGCTAAA-T-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTATACCCTTCCCGTACTAATAAAACCCCCTATTCTCATTATCATCATAGCAA--CTATCATGACAGGAACCATAATCGTCATACTAAGCTCGCACTGATTACTGATCTGAATTGGAT
|
|
759
|
+
i canFam2.chrM I 72 C 0
|
|
760
|
+
s dasNov1.scaffold_23239 7658 166 - 16977 --AG--TAAGGTCAGCT-AA-C-AAAGCTATCGGGCCCATACCCCGAAAATGTAGGCTCATACCCTTCCCGTACTAATAAATCCCttaatttttattattattatattta--CCTTAATCTTAGGAACAGTAATTACCATAATTAGCTCCCATTGATTATTAATCTGGATAGGCC
|
|
761
|
+
i dasNov1.scaffold_23239 I 72 C 0
|
|
762
|
+
s loxAfr1.scaffold_36650 6840 169 + 16266 CTAG--TAAGGTCAGCT-AA-ATTAAGCTATCGGGCCCATACCCCGAAAATGTCGGATCACACCCCTCCCATACTAATAAACCCACTAGCTCTTAGCCTAATCCTAACAA--CACTACTCGCAGGAACACTGATTACCATAATAAGCTCCCATTGATTGACAGCCTGAATGGGAC
|
|
763
|
+
i loxAfr1.scaffold_36650 I 71 C 0
|
|
764
|
+
s echTel1.scaffold_181343 3230 167 + 18297 ctaG--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTAT-TCCTTCCCATACTAATTAACCCATTAGCTTCCATTATTATGTCTAGTA--CTCTAATTTCAGGCACTCTAATTACTTTAATCAGCTCTCACTGACTTATAGCATGAATAGGTC
|
|
765
|
+
i echTel1.scaffold_181343 I 67 M 371
|
|
766
|
+
s monDom4.chrUn 117155268 165 + 174229318 ---G--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTGCACCCTTCCCATACTAATGTCCCCCTATGTATTAACCATTGTTTCGCTCA--GCTTATTAACAGGAACTTCAGTAACTCTAATTAGCAACCATTGGTTAACTGCCTGAATAGGCC
|
|
767
|
+
i monDom4.chrUn I 70 C 0
|
|
768
|
+
s galGal2.chrM 5169 168 + 16775 CTAG--TAAGGTCAGCT-AA-C-TAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTACTAATGAACCCCCATGCAAAACTAATCTGCACAGTAA--GCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCT
|
|
769
|
+
i galGal2.chrM I 75 C 0
|
|
770
|
+
s xenTro2.scaffold_18215 2762 165 + 3330 ---G--TAAAGTCAGCT-AA-A-AAAGCTTTTGGGCCCATACCCCAAACATGTTGGTTAAACTCCTTCCTTTACTAATGAACCCTATCGCACTATCAATAATCCTCTCAA--GCCTAGCATTAGGCACTATCCTCACTGTATCAAGCAATCATTGATTCCTAGCCTGAATAGGCC
|
|
771
|
+
i xenTro2.scaffold_18215 C 0 C 0
|
|
772
|
+
s tetNig1.chrUn_random 103513709 166 + 171761319 ---G--TAAAGTCAGCT-AAGT-TAAGCTTTTAGGCCCATACCCTAAAGATGTAGGTTAAAATCCTTCCTTTACTAATGAGCCCTTACATTACAGCCTCCTTGCTATTTG--GCCTACTCCTAGGCACAACAATCACCGCAACCAGCTCCCACTGACTAATTGCCTGAATAGGCC
|
|
773
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
774
|
+
s danRer4.chrM 4922 167 + 16596 ---GGATGAGGTCAGCT-AA-T-TAAGCTACCGGGCCCATACCCCGAACATGATGGTTAAAGTCCCTCCTTCATCAATGAACCCTTATGTCCTTATAATTTTAATATCCA--GCCTAGGTCTAGGAACCACATTAACTTTTTCTAGCTCACACTGAATTTTAGCCTGAATAGGAT
|
|
775
|
+
i danRer4.chrM C 0 C 0
|
|
776
|
+
|
|
777
|
+
a score=1213783.000000
|
|
778
|
+
s mm8.chrM 4010 399 + 16299 TGGAATTCAGCCTACTAGCAATTATCCCCATACTAATCAACAAAAAAAACCCACGATCAACTGAAGCAGCAACAAAATACTTCGTCACACAAGCAACAGCCTCAATAATTATCCTCCTGGCCATCGTACTCAACTATAAACAACTAGGAACATGAAT--ATTTCAACAACAAAC-AAACGGTCTTATCCTTAAC----ATAACATTAATAGCCCTATC------CATAAAACTAGGCCTCGCCCCATTCCACTTCTGATTACCAGAAGTAACTCAAGGGATCCCACTGCACATAGGACTTATTCTTCTTACATGACAAAAAATTGCTCCCCTATCAATTTTAATTCAAATTTACCCGCTACTCAACTCTA--CTATCATTTT----------AATA-CTAGCAATTACTTCTATTTTCATAGGGG
|
|
779
|
+
s rn4.chrM 3988 399 + 16300 TGGAAATAAGCCTTTTAGCTATCATCCCACTTCTAGCCAACAAAAAAAGCCCACGATCAACTGAAGCAGCAACAAAATATTTTCTAACCCAAGCTACAGCCTCAATAATTATCCTACTAGTCATCATCCTCAACTACAAACAATCAGGAATATGAAC--CCTTCAACAACAAAC-CAATAACATACTACTCAAC----ATAATACTCATTTCACTGGC------CATAAAACTTGGACTAGCCCCATTCCACTACTGACTACCCGAAGTCACCCAAGGAATTCCCCTACACATTGGATTAATCTTACTAACATGACAAAAAATTGCTCCACTATCAATTCTATACCAATTTTATCAACTCCTAAACCCAA--CTATCACCAC----------CATT-CTCGCAATTTCATCAGTCTTTGTTGGCG
|
|
780
|
+
i rn4.chrM C 0 C 0
|
|
781
|
+
s oryCun1.scaffold_140182 4165 399 + 20791 TAGAAATAAACATACTAGCAATTATCCCTATTCTAATCAACAAAGCCACCCCACGATCAACAGAAGCTGCAACCAAATATTTTCTAACACAAGCCACAGCATCTATAATCTTAATAATAGCTATTACACTTAATATCCTTGACTCCGGACAATGAAC--CCT-----AATTAAT-CCACAGAATCA-ACTTACT----CCAGTCCTAATTACACTGGCACTAATCATTAAACTAGGAATAGCCCCCTTCCACTTCTGAGTACCAGAGGTCACCCAAGGAGTTCCCCTAAAATCAGGATTAATCCTTCTCACGTGACAAAAATTAGCCCCCCTATCCATCCTTTACCAAATCTCCCCATCAATTAATCCAA--CTATAATAAT----------ATCA-GTAGCCATTCTATCAATTATAGTTGGCG
|
|
782
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
783
|
+
s hg18.chrM 4567 399 + 16571 TAGAAATAAACATGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCCATAATCCTTCTAATAGCTATCCTCTTCAACAATATACTCTCCGGACAATGAAC--CAT-----AACCAATACTACCAATCAATACTCATCATTAATAATCATAATGGCTATAGC------AATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAGGCACCCCTCTGACATCCGGCCTGCTTCTTCTCACATGACAAAAACTAGCCCCCATCTCAATCATATACCAAATCTCTCCCTCACTAAACGTAA--GCCTTCTCCT----------CACT-CTCTCAATCTTATCCATCATAGCAGGCA
|
|
784
|
+
i hg18.chrM C 0 C 0
|
|
785
|
+
s panTro2.chrM 3984 399 + 16554 TAGAAATAAATATACTAGCTTTTATCCCAATCCTAACCAAAAAAATAAGCCCCCGCTCCACAGAAGCCGCCATCAAATACTTTCTCACACAAGCAACTGCGTCCATAATTCTCCTGATAGCTATCCTCTCCAACAGCATACTCTCCGGACAATGAAC--CAT-----AACCAATACTACCAATCAATACTCATCATTAATAATTATAATAGCAATGGC------AATAAAACTAGGAATAGCCCCCTTTCACTTTTGAGTTCCAGAAGTTACCCAAGGCACCCCCCTAATATCCGGCCTACTCCTCCTCACATGACAAAAATTAGCCCCTATTTCAATTATATACCAAATCTCCTCATCACTGAACGTAA--ACCTTCTCCT----------CACC-CTTTCAATCTTGTCCATTATAGCAGGCA
|
|
786
|
+
i panTro2.chrM C 0 C 0
|
|
787
|
+
s rheMac2.chr5 34440013 395 - 182086969 TAGAAATAAACATACTAGCACTTACCCTAATCTTAATTAAAAAAATAAATCCCCGCTCTACAGAAGCAGCCACCAAATATTTCCTTACACAAGCAACCATATCTATAATTCTCATGACAGGTATCCTTTCCAATAACCTGTTCTCCAGACAATGAAA--AAT-----AATAAACACTATCAATCAATTCTTATCCTTAATAATAATAGTGGCCCTAGT------AATAAAACTAGGAATATTCCCCTTTCACTTCTGAGTCTCAGTGATAACCCAAGGAATCTCTTTAATGTCTGGTATACTTCTCCTCACATGACAAAAAGTAGCTCTTATCTCTATTATGTTTCAAAGTTTTTCATCAACAAACAGGA--ACATCCTCCT----------AACA-----CAATCCTATCCATTATAGTGGGTG
|
|
788
|
+
i rheMac2.chr5 C 0 C 0
|
|
789
|
+
s bosTau2.chrM 4362 399 + 16338 TTGAAATAAATATACTCGCCATCATCCCCATCATAATAAAAAATCACAACCCACGAGCTACAGAAGCATCAACTAAATATTTTTTGACTCAATCAACAGCCTCAATACTACTAATAATAGCCGTCATCATTAACCTAATATTCTCAGGCCAATGAAC--CGT-----AATAAAACTATTTAACCCAATAGCCTCAATACTTATAACGATAGCCCTAGC------TATAAAACTAGGAATAGCCCCATTTCACTTCTGAGTCCCAGAAGTAACACAGGGCATCCCCCTATCCTCAGGCCTTATCCTACTGACATGACAAAAACTAGCACCTATATCTGTACTTTACCAAATCTTCCCATCAATTAACCTAA--ACTTAATTCT----------AACC-CTATCAGTTTTATCAATCCTAATTGGAG
|
|
790
|
+
i bosTau2.chrM C 0 C 0
|
|
791
|
+
s canFam2.chrM 4010 399 + 16727 TCGAAATAAACATGCTAGCCATCATCCCTATTCTCATAAAAAAGTACAATCCACGAGCCATAGAGGCCTCTACAAAATATTTTCTTACACAAGCTACAGCCTCAATATTACTAATAATAGGAGTCACTATCAACCTCCTTTACTCCGGCCAATGGGT--AAT-----CTCAAAAATCTCAAACCCCATCGCATCCATCATGATAACCACTGCCCTAAC------AATAAAACTAGGCCTATCTCCATTCCACTTCTGAGTTCCCGAAGTAACACAGGGAATTACGCTCATATCAGGAATAATCCTACTAACATGACAAAAAATCGCACCTATATCCATCCTATATCAAATCTCTCCATCAATTAACACTA--ACCTTCTTAT----------ACTA-ATAGCCCTTACATCCGTTCTAGTAGGAG
|
|
792
|
+
i canFam2.chrM C 0 C 0
|
|
793
|
+
s dasNov1.scaffold_23239 7824 399 - 16977 TAGAAATAAACATATTCTCAATAATCCCCATTATCATAATAAAATCACACCCTCGATCAACAGAAGCCGCCACCAAATATTTCATGACACAAGCAACAGCATCTATACTTCTAATAATAGGCGTAATCATTAACTTATACTACTCAGGACAATGAAC--AAT-----TATAAATTCACTCAACCCAGTTACATCATATATAATAACCATCGCACTTGC------CATAAAACTAGGACTAGCCCCATTCCACTTCTGAGTGCCAGAGGTAACGCAAGGTACCCAACTAACATCAGGAATAATTCTTCTCACATGACAAAAACTAGCCCCAATAACAATCCTCTATCAAATCCACTCATCCCTAAACCTAA--ATCTAATACT----------AACC-CTAGCTATCCTTTCAATCCTAATCGGGG
|
|
794
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
795
|
+
s loxAfr1.scaffold_36650 7009 399 + 16266 TAGAAATGAACATACTTACTATAATTCCCATTCTAATAAAGACAACCAATCCACGATCCACAGAAGCCGCCACAAAGTACTTTATAACCCAAGCCATAGCATCCATAATACTTATAATGGCTTTAACAATTAACCTAATATACTCAGGACAATGATC--AAT-----TACAAAAATAACCAACCCTGTAGCATCAAACATAGCATTAATAGCTTTAAT------AACCAAACTAGGCTCAGCCCCATTCCACTTCTGAGTTCCAGAAGTAACGCAAGGAGTCGAACTTACACCAGGGATGATCTTGTTAACCTGACAAAAATTAGCACCATTATCCCTACTATATCAAATGGCCACCTACACTAACACTA--ACCTAATCTA----------CCTT-TCTGGTCTACTTTCAATCCTAATTGGGG
|
|
796
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
797
|
+
s echTel1.scaffold_49882 4260 392 - 7170 TTGAAATGAATATATTTGCTATTATTCCTATGATCATAAAAAATAACTCCCCCCGAGCAATTGAGGCTGCAATAAAATATTTCCTCATTCAAGCATCCGCCTCCATACTACTACTTATAGCAGCCTCCCTTAATTTTATATACTCAGGTCAATGAAC--GTT-----AACAGAAATAAATGTCTCAATAGCATCCCTAATTATATTAATTGCTATACT------GATAAAATTAGGTATGGCACCATTTCACTTCTGAGTCCCAGAAGTTACTCAAGGTACTGTTTTATTGACCAGCCTCATTATTTTAACTTGACAAAAGCTAGCCCCCCTAGCTATTCTTTTCCAAATCGCCCCCTCAATTAATGTAG--ATATTATTCT----------TACA-ACAGCTATCCTATCAATTCTA-------
|
|
798
|
+
i echTel1.scaffold_49882 I 1469 n 67
|
|
799
|
+
s monDom4.chrUn 117155433 399 + 174229318 TAGAAATTAATACACTGGCCATTATTCCACTAATAACTTACCCCCACCACACACGAAACACAGAATCAGCCATCAAATATTTCATAACTCAAGCTACAGCTTCAATACTCCTCATATTCTCTATTATTTATAATGCATCCTTCACTAACCAATGGAC--CAT-----TAACCACTCACCCAACCAATGAGCCTCCTTACTAATAACCCTAGCCCTAGC------AATAAAACTAGGACTAGCCCCCTTTCACTTTTGAGTGCCAGAAGTTACACAAGGAATCCCACTATTATCTGGTATAATACTCCTAACATGACAAAAAATTGCTCCCATCTCAATCATATACCAAATTTCACCCTCACTTAATATAC--AAGTACTAAT----------AACC-TTAAGCATTTTATCCACACTATTAGGAG
|
|
800
|
+
i monDom4.chrUn C 0 C 0
|
|
801
|
+
s galGal2.chrM 5337 399 + 16775 TAGAGATCAACACCTTAGCCATCATCCCCCTCATCTCCAAGTCACACCACCCCCGAGCGATTGAAGCCACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTCGAGCATAACCAACGCCTGATCCACCGGACAATGAGA--CAT-----TACACAACTAAACCACCCGACATCATGCCTAATATTAACAATAGCAATCGC------AATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCCAATCACACTCCTCCTCCTAACATCACAGTCTCTTAATACCA--CCTTACTCAC----------CCTC-CTAGCAATCTCCTCCACCCTAATCGGAG
|
|
802
|
+
i galGal2.chrM C 0 C 0
|
|
803
|
+
s xenTro2.scaffold_18215 2927 399 + 3330 TAGAAATCAATACCCTAGCTATCATCCCACTGATAGCCCAAAACCACCACCCACGAGCAGTTGAAGCCTCAACCAAATACTTTCTAACTCAAGCTGCAGCCTCAGCTCTTCTCTTATTCTCAGCTTTAAATAATGCTTGGTTCACTGGAGAATGGTC--AAT-----TATAAACTTGACCAACTCAATCTCATGCACCACCATAACCATCGCCATCTG------CATGAAACTCGGACTAGCACCATTCCACTTCTGACTCCCAGAGGTCCTCCAAGGACTTAATTTAACAACAGGTCTTATCCTATCTACCTGACAAAAACTTGCCCCAATGGCCATCCTCTACCAGATCTCTCCATCAATAAACACCT--CCCTTCTTCT----------TTTA-ATTGGACTAACCTCAACATTAATCGGGG
|
|
804
|
+
i xenTro2.scaffold_18215 C 0 n 0
|
|
805
|
+
s tetNig1.chrUn_random 103513875 396 + 171761319 TAGAAATCAACACCCTCGCCATTATTCCCCTGATAGCCCAACACCACCACCCACGAGCAGTAGAGGCCACAACCAAATATTTCCTCACACAAGCCACCGCAGCAGCCATACTCCTATTCGCAAGCACAACCAACGCATGACTGACCGGACAGTGAGAACTGC-----AACAA--ATAACACACCCCCTTCCCTCCACATTAATTATTCTTGCCCTGGC------CCTAAAAATTGGACTAGCCCCACTACACACTTGACTCCCAGAAGTCCTCCAAGGATTAGACCTAACAACCGGACTCGTCCTCTCCACATGACAAAAGCTCGCACCCTTTGCCCTCCTCCTCCAACT---TCAACCAAACAACCCAA--CACTGCTCGT----------CATC-CTAGGAGTGCTATCAACACTAATCGGAG
|
|
806
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
807
|
+
s danRer4.chrM 5089 399 + 16596 TAGAAATTAATACTTTAGCAATTGTCCCTCTAATAGCACAACAACACCACCCACGGGCAGTAGAAGCCACCACAAAATACTTCCTTATTCAAGCTGCTGCCGCAGCAATAATTCTATTCACAAGTACAACAAATGCCTGAATTTCAGGACAATGGGA--TGT-----TACAGGTATACCAGGCCCAGCCACCAGTACAGCAATAATGTTTGCATTGGC------TCTCAAAATCGGTCTAGCACCAATACATTTTTGATTACCAGAAGTTCTTCAAGGATTAGATCTGTTGACAGGACTAATTTTGTCAACCTGACAAAAACTTGCCCCAATAGCATT--------AA-----TTATCCAAACGACCCAAACCACTGACCCTCTTATTCTTACATCACTAGGAATTGCTTCCTCTCTCATTGGAG
|
|
808
|
+
i danRer4.chrM C 0 C 0
|
|
809
|
+
|
|
810
|
+
a score=552799.000000
|
|
811
|
+
s mm8.chrM 4409 135 + 16299 CATGAGGAGGACTTAACCAAACACAAATACGAAAAATTATAGCCTATTCATCAATTGCCCACATAGGATGAATATTAGCAATTCTTCCTTACAACCCATCCCTCACTCTACTCAACCTCATAATCTATATTATTC
|
|
812
|
+
s galGal2.chrM 5736 135 + 16775 GCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCCTATAACCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTA
|
|
813
|
+
i galGal2.chrM C 0 C 0
|
|
814
|
+
s monDom4.chrUn 117155832 135 + 174229318 GATGAGGAGGACTAAACCAAACACACCTACGAAAAATACTAGCATACTCATCAATCGCTCACATAGGGTGAATAACAATTATTATCATTATTTACCCTACACTCACTATACTAAATTTACTAATTTATTTTACTA
|
|
815
|
+
i monDom4.chrUn C 0 C 0
|
|
816
|
+
s echTel1.scaffold_181343 3775 135 + 18297 GCTGGGGCGGCCTAAACCAAACCCAACTACGAAAAATTATAGCGTACTCGTCAATTGCTCACATGGGCTGAATAGCTGCCGTAATAATTTATAATCCCACCCTAATATTACTTAACCTATTATTATACTTAATCT
|
|
817
|
+
i echTel1.scaffold_181343 M 371 C 0
|
|
818
|
+
s loxAfr1.scaffold_36650 7408 135 + 16266 GATGAGGAGGCCTAAATCAAACACAACTACGAAAAATCTTAGCCTATTCATCAATCTCCCATATAGGCTGAATACTCATTATCTTGCCCTTCAATCCCACCCTTACCCTACTAAACTTAACCATTTACATTATAC
|
|
819
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
820
|
+
s dasNov1.scaffold_23239 8223 135 - 16977 GATGAGGAGGACTAAACCAAACACAACTACGAAAAATTATAGCGTATTCATCCATTGCACACATAGGATGAATAACAGCAATCATTATATACAATACATCATTAATGATACTAAACCTAGTGATCTACCTAATAA
|
|
821
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
822
|
+
s canFam2.chrM 4409 135 + 16727 GCTGAGGCGGACTAAATCAAACTCAACTACGAAAAATCATAGCATACTCCTCCATTGCCCACATAGGCTGAATAGCCGCTATCATTACTTATAACCCTACAATAATAGTTCTAAACTTAACTTTATATATTCTAA
|
|
823
|
+
i canFam2.chrM C 0 C 0
|
|
824
|
+
s bosTau2.chrM 4761 135 + 16338 GCTGAGGGGGACTAAACCAAACACAACTCCGAAAAATCATAGCCTACTCATCAATCGCTCATATAGGCTGAATAACAGCAGTACTACCATATAACCCCACCATAACATTGCTAAACTTAATTATCTATATCATTA
|
|
825
|
+
i bosTau2.chrM C 0 C 0
|
|
826
|
+
s rheMac2.chr5 34440408 87 - 182086969 GTTGAGGGGAACTTAACCAAA--CAACTGCGTCAAATCCTAGCCCACTCCTC----------------------------------------------AACATTACCACCCTAAACCTGATTATTTACCTTATCT
|
|
827
|
+
i rheMac2.chr5 C 0 C 0
|
|
828
|
+
s panTro2.chrM 4383 135 + 16554 GCTGAGGCGGACTAAACCAAACCCAACTACGCAAAATCCTAGCATACTCCTCAATCACCCACATAGGCTGAATAATAGCAGTCCTACCATATAACCCTAACATAACCATTCTTAATTTAACCATTTACATCATCC
|
|
829
|
+
i panTro2.chrM C 0 C 0
|
|
830
|
+
s hg18.chrM 4966 135 + 16571 GTTGAGGTGGATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCC
|
|
831
|
+
i hg18.chrM C 0 C 0
|
|
832
|
+
s oryCun1.scaffold_140182 4564 135 + 20791 GTTGAGGTGGACTAAACCAAACCCAACTACGAAAAATCCTAGCATACTCTTCAATCGCCCACATAGGATGAATAGCAGCTATCATCACATTTAACCCAAATACTATAGTCCTAAACCTAATTATCTATATTCTCA
|
|
833
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
834
|
+
s rn4.chrM 4387 135 + 16300 CCTGAGGAGGACTTAACCAGACCCAAACACGAAAAATCATAGCATACTCATCAATTGCCCACATAGGATGAATAACAGCAATCCTTCCATACAACCCTAACTTAACCCTCCTAAACTTAACAATTTACATCCTAC
|
|
835
|
+
i rn4.chrM C 0 C 0
|
|
836
|
+
s tetNig1.chrUn_random 103514271 135 + 171761319 GCTGAGGAGGCCTAAACCAAACCCAGCTACGAAAAATCCTGGCATACTCATCCATCGCCCACCTAGGTTGAATAATCTTAATTCTGCAATTTTCACCAACCCTCACCCTCCTCACACTTATATTATACCTAATCA
|
|
837
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
838
|
+
s danRer4.chrM 5488 135 + 16596 GGTGAAGCGGACTTAACCAAACCCAACTCCGAAAAATTCTAGCTTATTCATCAATTGCCCACATAGGGTGAATAATTATTGTTATCCAGTACGCTCCGCAACTTACTCTGATTGCTTTAGGAACATATATCTTTA
|
|
839
|
+
i danRer4.chrM C 0 C 0
|
|
840
|
+
e xenTro2.scaffold_18215 3326 0 + 3330 I
|
|
841
|
+
|
|
842
|
+
a score=401805.000000
|
|
843
|
+
s mm8.chrM 4544 198 + 16299 TTACAGCCCCTATATTCATAGCACTTATACTAAAT-AA-----CT-CTATAACCATC---AACTCAATCTCACTTCTATGAAATAAAACTCCAGCAATACTAACTATAATCTCACTGATATTACTATCCCTAGGAGGCCTTCCACCACTAA----------CAGGATTCTTACCAAAATGAATTATCATCACAGAACTTATAAAAAACAACTGTCTAA
|
|
844
|
+
s rn4.chrM 4522 198 + 16300 TTACTGTTCCAATATTCAATTACATCATAACAAAC-TC-----AG-CAACAACAATC---AACACACTCTCACTCGCATGAAATAAAACTCCCATAATCCTAACCATAGCATCCATCATCCTCCTATCACTAGGAGGACTCCCCCCTCTCA----------CAGGATTTTTACCAAAATGAGCAATTATCTCCGAGCTTCTAAAAAACAACTGCTCAA
|
|
845
|
+
i rn4.chrM C 0 C 0
|
|
846
|
+
s oryCun1.scaffold_140182 4699 198 + 20791 TGACAATCCCTATATTCATAATATTCATACAGCAC-TC-----AA-GTACAACCACT---CTATCACTATCACAAATGTGAAACAAAAATCCACTAATAGTATCTACTATCCTAATCACCCTAATATCCCTAGGAGGCCTGCCCCCACTCA----------CAGGTTTTATCCCTAAATGAATTATCATCCAGGAATTAACAAAAAATGGCAATATCA
|
|
847
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
848
|
+
s hg18.chrM 5101 198 + 16571 TAACTACTACCGCATTCCTACTACTCAACTTAAAC-TC-----CA-GCACCACGACC---CTACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAA----------CCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCA
|
|
849
|
+
i hg18.chrM C 0 C 0
|
|
850
|
+
s panTro2.chrM 4518 198 + 16554 TAACTACTACCGCATTTCTGCTACTCAACTTAAAC-TC-----CA-GCACCACAACC---CTACTACTATCTCGCACCTGAAACAAGCTAACATGATTAACTCCCCTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTACCCCCACTAA----------CTGGCTTCTTACCCAAATGAGTTATCATCGAAGAATTCACAAAAAATAATAGCCTCA
|
|
851
|
+
i panTro2.chrM C 0 C 0
|
|
852
|
+
s rheMac2.chr5 34440495 198 - 182086969 TAACAACAACTGCATTTCCAGCACTCAACCTGAGT-AT-----AA-GCACCACAAAG---CTATCATTATTTCACACCTGAAACAAATGAACATGGTTGACACCTGTAATTCCACTAATTCTACTATCCTTAGGAGGTTTATCCCCATTAA----------CAGGGTTCCTGCCTTAATGAATCACCATTCAAGAATTTACAGAAAACAATAGCCTTA
|
|
853
|
+
i rheMac2.chr5 C 0 C 0
|
|
854
|
+
s bosTau2.chrM 4896 198 + 16338 TAACTTCCACCATATTTACCATATTTATAGCCAAT-TC-----CA-CCACCACTACC---CTGTCATTATCACACACATGAAATAAAACACCCATTATAACCGTCCTAATTCTTGCCACTCTCCTATCCATAGGAGGACTCCCTCCCCTAT----------CTGGGTTTATACCAAAATGAATAATCATCCAAGAGATAACAAAAAATAACAGCATCA
|
|
855
|
+
i bosTau2.chrM C 0 C 0
|
|
856
|
+
s canFam2.chrM 4544 198 + 16727 TAACACTATCTACCTTCATACTATTTATATTAAAC-TC-----AT-CCACCACGACC---CTATCTTTATCCCACATATGAAACAAATTTCCCCTAATCACTTCCATAATCTTAATCTTAATACTATCCCTAGGAGGACTACCCCCATTAT----------CTGGCTTCATCCCCAAATGAATAATTATTCAAGAATTAACGAAAAATAACATAATTA
|
|
857
|
+
i canFam2.chrM C 0 C 0
|
|
858
|
+
s dasNov1.scaffold_23239 8358 198 - 16977 TAACAATCACAATATTTGCCCTCTTTA---TTAAC-TC-----AA-CAACAACAACTACACTATCTCTATCTCTTACATGAAACAGTACACCAATCCTAACAACAATGCTCCTAACAACCCTACTATCACTAGGAGGCCTTCCCCCACTAT----------CAGGCTTCGCACCAAAATGAATAATCATCCAAGAGATGACAAAAAACAACATACTCC
|
|
859
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
860
|
+
s loxAfr1.scaffold_36650 7543 198 + 16266 TAACACTGTCCATCTTTATAATTCTAA-CAAATAC-TT-----TCACAACTTCAATA---TCATCCCTAACTCTAATATGAAACAAAACACCTGCAATAACCATTATACTTATAACTACTTTACTATCTTTAGGAGGACTACCCCCACTAT----------CGGGATTCATACCCAAATGACTTATGATTCACGAACTAACCAAAAACAACAGTATTA
|
|
861
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
862
|
+
s echTel1.scaffold_181343 3910 198 + 18297 TCACATTTTCAGCATTCACCATCTTAATTAAATGC-TC-----TT-CAACCTCAACT---TCTATACTAACAATAACCTGAAATTCCTACCCATTAATAGTCTCTATCCTATTAATTATTCTTTTATCAATGGGAGGATTACCTCCATTAA----------CAGGTTTTGTACCTAAATGACTAATTATCTATGAACTGATTAAAAATACTAACATTG
|
|
863
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
864
|
+
s monDom4.chrUn 117155967 198 + 174229318 CAACCATTACCATATTCCTTATATTCAACCACTCA-TC-----AA-TAACCAAAATC---AACTCACTATCAACCCTATGAAACAAGTCTACCCCCATTACCATCATTATTATATTAACACTTCTATCCTTAGGGGGACTACCCCCATTAA----------CAGGTTTTATACCCAAATGATTAATTCTCCAAGAACTAATTTCATATAAAAATATAC
|
|
865
|
+
i monDom4.chrUn C 0 C 0
|
|
866
|
+
s galGal2.chrM 5871 198 + 16775 TGACCTCAACTGTATTCCTATCCCTAGCCCAAATC-AA-----AG-TCCTAAAACTG---TCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAA----------CCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCC
|
|
867
|
+
i galGal2.chrM C 0 C 0
|
|
868
|
+
s xenTro2.scaffold_96 2673143 176 - 2855184 TCACAGGCGAGACATCCCTGGCACATATACTAAATATT-----TC-TAACAATAATT------------------ACACAATATAA------------------TATGCACCTTCCAAACTTAGTGTCCCTGGGGTGCTGCCCTCTGCTAAAGCTTTATTTAAACATTCTCATTAAGAAAAATACTTTGTATAAAACTAACTGAGGGCATATTTTTAA
|
|
869
|
+
i xenTro2.scaffold_96 n 0 I 6355
|
|
870
|
+
s tetNig1.chrUn_random 103514406 198 + 171761319 TAACCTCCTCCGCCTTCCTCACATT-----CATCC-TCAACAAAA-CCACAACAATC---AATGCACTAGCCACATCCTGAGCCAAAACCCCCATTCTTACATCCCTCTTACCCCTTGTTCTCCTATCCCTCGGAGGCCTCCCTCCGCTAA----------CTGGCTTCATACCAAAATGACTAATCCTACAAGAACTAACTAAACACGATCTCGCCC
|
|
871
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
872
|
+
s danRer4.chrM 5623 198 + 16596 TAACATCCGCGGCATTCCTTACTTTAAAAGTATTA-TC-----AG-CCACAAAAATT---AACACCCTAACAACGACCTGACCGAAAAGCCCAATCCTGGCAGCAATTGCTACTTTAGTTATATTATCACTGGGAGGACTTCCCCCACTGA----------CGGGATTCATACCAAAATGATTAATCCTACAAGAGTTAACGAAACAAGACCTACCAG
|
|
873
|
+
i danRer4.chrM C 0 C 0
|
|
874
|
+
|
|
875
|
+
a score=271987.000000
|
|
876
|
+
s mm8.chrM 4742 205 + 16299 TTATAGCAACACTCATAGCAATAATAGCTCTACTAAACCTATTCTTTTATACTCGCCTAATTTATTCCACTTCACTAACAATATTTCCAA---CCAACAATAACTCAAAAATAATA-ACTCACCAAACAAAAACTAAACCCAACCTA---ATATTTTCCACC--CTAGCTATCATAAGCACAATA---------ACCCTACCCCTAGC-------CCCCC-------AACTAATTAC
|
|
877
|
+
s rn4.chrM 4720 205 + 16300 CCCTATCAACACTAATAGCTATCATAGCCCTATTAAGCCTATTCTTCTATACTCGACTAATTTACTCTATATCCCTCACCACATTCCCAA---CCAACAACAACTCCAAAATAATC-TCCCACCACCAAAACCCAAAACATAATTTT---ATCCTCCCAACC--CTCACAGTATTAAGTACCCTA---------ACCCTACCGCTTTC-------CTCCC-------AACTAATCAC
|
|
878
|
+
i rn4.chrM C 0 C 0
|
|
879
|
+
s oryCun1.scaffold_140182 4897 219 + 20791 TTTTACCCACCGCTATAGCCATGCTTGCCCTCCTAAATCTATATTTTTATATACGCCTTATCTATTCTTCCTCACTAACTATATTCCCTA---CCACCAACAATCTAAAAATAAAA-TGACAATTTGAATCAACAAAACGCATACCC---CTCATCACTCCA--CTAATTATTTTATCAACCATA---------CTCCTCCCCCTCACACCAGCACTCTCAGTATTAAATTAGCTTT
|
|
880
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
881
|
+
s hg18.chrM 5299 211 + 16571 TCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCA---TATCTAACAACGTAAAAATAAAA-TGACAGTTTGAACATACAAAACCCACCCCA---TTCCTCCCCACA--CTCATCGCCCTTACCACGCTA---------CTCCTACCTATCTC-------CCCTT-TTATACTAATAATCTT
|
|
882
|
+
i hg18.chrM C 0 C 0
|
|
883
|
+
s panTro2.chrM 4716 211 + 16554 TCATCCCCACCATCATAGCCATCATCACTCTCCTTAACCTCTATTTCTACCTACGCCTAATCTACTCCACCTCAATTACACTACTTCCCA---TATCTAATAACGTAAAAATAAAA-TGACAATTCGAACATACAAAACCCACCCCC---TTCCTCCCTACA--CTCATCACCCTTACCACACTG---------CTTCTACCCATCTC-------CCCCT-TCATACTAATAATCTT
|
|
884
|
+
i panTro2.chrM C 0 C 0
|
|
885
|
+
s rheMac2.chr5 34440693 211 - 182086969 TTACCCCAATCATTACAGCCATCATAACCCTACTCAACCTGTACTTTTACATACGCCTAGTCTATTCCTTCTCAGTAATACTATTCCCCT---CATCTAACAATATGAAAATAAAA-TGACAATTTGGAAACACAAAACCCATACTA---CTTTTCCCCCAG--CTTGTCATCTCTTCTACCCTC---------CTCTTATCCATCTC-------TCCAT-TAATATTAAATATAAC
|
|
886
|
+
i rheMac2.chr5 C 0 C 0
|
|
887
|
+
s bosTau2.chrM 5094 211 + 16338 TTCTACCCACTTTCATAGCAATCACAGCTCTACTAAACTTATATTTTTATATACGACTCACGTATTCTACCACACTAACAATATTTCCCT---CCACAAACAACATAAAAATAAAA-TGACAATTTCCCCTTATGAAAAAAATAACT---TTTCTACCAACA--ATAGTCGTATTATCTACCATA---------ATACTACCACTCAC-------GCCAA-TACTATCAGTGTTAGA
|
|
888
|
+
i bosTau2.chrM C 0 C 0
|
|
889
|
+
s canFam2.chrM 4742 211 + 16727 TTATTCCAACACTAATGGCTATCACCGCTCTACTTAACTTATATTTCTACCTGCGACTCACATATAGCACCGCACTTACCATATTTCCAT---CCACAAACAACATAAAAATAAAA-TGACAGTTCGAATACACAAAAAAGGCAACC---CTATTACCCCCC--TTAATTATTACCTCAACTATA---------CTACTCCCACTAAC-------ACCTA-TATTATCAGTCTTGGA
|
|
890
|
+
i canFam2.chrM C 0 C 0
|
|
891
|
+
s dasNov1.scaffold_23239 8556 211 - 16977 TACTACCAACAACAATAGCCATTATGGCACTACTGAACCTCTATTTCTACATACGACTTATCTACTCAACATCACTCACAATATTCCCAA---CGACCAATAACAACAAAATAAAA-TGAAAATACAAAACACAAAATTTTATCCCC---CTATCACCAACA--TTAATTACACTATCCACAATA---------CTCATCCCCCTCAC-------TCCAA-TAATATTAATCTTAAA
|
|
892
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
893
|
+
s loxAfr1.scaffold_36650 7741 211 + 16266 TCATACCACTAACCATGGCCATTATAGCATTACTAAACATGTACTTCTACATACGACTAATCTACTACTCATCACTAACAATCCTACCAT---CTACAAATAATATGAAAATAACC-TGACGATTTACTAATACTAAACACACAATA---ACATTACCCACC--CTAATCACCCTATCTAACATA---------CTACTTCCCCTAAC-------CCCAA-TAATTTCAATGCTAGA
|
|
894
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
895
|
+
s echTel1.scaffold_181343 4108 211 + 18297 CCATAACACTAACAATATCTATCCTAGCCCTCTTGAATCTCTTCTTTTATTTACGCTTAATTTATGCATCCTCACTCACCCTGTTCCCGA---CAAGTAGTAATCTAAAATTCAAA-TGGAAA---ATCAATACCCCAAACAAAATATATTTTTTACCAACA--ATAGTCTCAATTTCACTACTT---------TTCCTTCCTGTCTC-------CCCAA-TAATTCTTATATTAAA
|
|
896
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
897
|
+
s monDom4.chrUn 117156165 211 + 174229318 CCCTAGCAACAGCACTAGCATTATCCGCACTACTAAACCTATTCTTTTATATACGAATTATTTATTTATCAACACTTACCATAGCACCGT---CCATTAATAACTCAAAAATACAA-TGAACTCTTCTACCCCCAAAAACACTCACA---CTCATTCCAACA--CTGACAATAATCTCATTACTA---------TTCTTACCTCTTAC-------CCCTA-TATTTATTGTACTCAC
|
|
898
|
+
i monDom4.chrUn C 0 C 0
|
|
899
|
+
s galGal2.chrM 6069 208 + 16775 CAATAGCCACAATCATCACAATACTATCACTCCTAAGCCTATTCTTCTACCTCCGACTTGCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGA-CGA--------ACTAACAAAACCCTAAACA---CCCCCACCGCCATTCTAACTGCGCTATCAACCACC---------CTATTGCCCCTTTC-------CCCCC-TAATTATTACCATACT
|
|
900
|
+
i galGal2.chrM C 0 C 0
|
|
901
|
+
s tetNig1.chrUn_random 103514604 205 + 171761319 CAACAGCCACCCTGGCAGCACTCAGCGCCCTACTAAGCCTCTACTTCTATCTTCGCCTCTCCTACGCCATAACCCTAACAATCGCCCCCA---ACAAC-TTAACAGGGACCCTCCCATGACGTACCCAAACAACCCAACCAAACATG---ATAACCGCCACC--ATAACAGCCTCTTCAATCCTT---------CTCCTCCCCATGAC-------CCCTG-GAATTCTTAC------
|
|
902
|
+
i tetNig1.chrUn_random C 0 N 0
|
|
903
|
+
s danRer4.chrM 5821 205 + 16596 CCACAGCTACTATCATGGCGCTTACCGCCCTCCTAAGCTTATTTTTTTACCTACGTCTATGTCATGCAATAACATTAACGACTTCACCAA---ACACTATCAATTCAGCCCCTCAC-TGACGGGTACAAACGACCCA---AAAC-------TCACTAC--CC--CTAACAATCTCTGTTACTGTTACTATAGGACTTTTACCACTGAC-------CCCAG-CCATCTTAAT------
|
|
904
|
+
i danRer4.chrM C 0 I 9
|
|
905
|
+
e xenTro2.scaffold_96 2673319 6355 - 2855184 I
|
|
906
|
+
|
|
907
|
+
a score=105153.000000
|
|
908
|
+
s mm8.chrM 4947 33 + 16299 CTAGAAG---------TTTAGGATATA-CT------AGTCCGCGAGC--CT
|
|
909
|
+
s rn4.chrM 4925 32 + 16300 ATAGAAG---------TTTAGGATATA-C-------AGTTCAAGAGC--CT
|
|
910
|
+
i rn4.chrM C 0 C 0
|
|
911
|
+
s oryCun1.scaffold_140182 5116 32 + 20791 AAAGGAG---------TTTAGGTTACA-C-------AGACCAAGAGC--CT
|
|
912
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
913
|
+
s hg18.chrM 5510 34 + 16571 ATAGAAA---------TTTAGGTTAAA-TA-----CAGACCAAGAGC--CT
|
|
914
|
+
i hg18.chrM C 0 C 0
|
|
915
|
+
s panTro2.chrM 4927 34 + 16554 ATAGAAA---------TTTAGGTTAAG-CA-----CAGACCAAGAGC--CT
|
|
916
|
+
i panTro2.chrM C 0 C 0
|
|
917
|
+
s rheMac2.chr5 34440904 33 - 182086969 TTAGAAA---------TTTAGGTTAAA-TA------AGACCGAGGAC--CT
|
|
918
|
+
i rheMac2.chr5 C 0 C 0
|
|
919
|
+
s bosTau2.chrM 5305 32 + 16338 ATAGGAA---------TTTAGGTTAAA-C-------AGACCAAGAGC--CT
|
|
920
|
+
i bosTau2.chrM C 0 C 0
|
|
921
|
+
s canFam2.chrM 4953 33 + 16727 CTAGGAG---------TTTAGGTTAGACC-------AGACCAAGAGC--CT
|
|
922
|
+
i canFam2.chrM C 0 C 0
|
|
923
|
+
s dasNov1.scaffold_23239 8767 33 - 16977 CTAGGGA---------TTTAGGTTAGA-CA------AGACCAAGAGC--CT
|
|
924
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
925
|
+
s loxAfr1.scaffold_36650 7952 32 + 16266 ATAGGAA---------TTTAGGTTAAA-C-------AGACCAAGAGC--CT
|
|
926
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
927
|
+
s echTel1.scaffold_181343 4319 33 + 18297 TTAGGGG---------GTTAGGTTAAATT-------AGACCAAGAGC--CT
|
|
928
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
929
|
+
s monDom4.chrUn 117156376 43 + 174229318 ATAAGAATTACAAGCTTTTATCTTGCA-T-------ACTTCGAACGCAAAT
|
|
930
|
+
i monDom4.chrUn C 0 C 0
|
|
931
|
+
s galGal2.chrM 6277 39 + 16775 ATAGAAA---------CTTAGGATTAA-CTGTCACCAAACCAAAGGC--CT
|
|
932
|
+
i galGal2.chrM C 0 C 0
|
|
933
|
+
s danRer4.chrM 6035 33 + 16596 ATAGAGA---------CTTAGGATAAC-CT------AGACCAAGAGC--CT
|
|
934
|
+
i danRer4.chrM I 9 C 0
|
|
935
|
+
e xenTro2.scaffold_96 2673319 6355 - 2855184 I
|
|
936
|
+
|
|
937
|
+
a score=2531764.000000
|
|
938
|
+
s mm8.chrM 4980 575 + 16299 TCAAAGCCCTAAGA--AAAC---ACA-CAAGTTTAACTTCTG--------A------------TAAGGACTGTAAGACTTCA-TC--CTACATCTATTGAA--TGCAAATCAAT---------TGCTTTA-------AT-TAAGCTAAGACCTC--------AA-CTAGATTGGCAGGAATTAAA--CCTACG-AAA---ATTTAGTTAACAGCTAAATAC-CCTA----T-TACTGGCTTCAATCTA-CTTCTACC--GCCG--A--A------AAAAAAA--AATGGCGGTA-----GAAGTCTTAGTA-GAGAT--TT-CTCTACACCTTCGAAT-----------------TTGCAATTCGACATGA-ATAT---CACCTT----AAGACCTCT-------------------GGTAAAAAGA--GGATTTAAACCTCTGTGTTTAGATTTACAGTCTAATGCT---T----ACTCAGCCATTTTA----------------------------------CC-----------TATG---TTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGGAACCCTCTATCTACTATTCGGAGCCTGAGCGGGAATAGTGGGTACTGCACTAAGTATTTTAATTCGAGCAGAATTAGGTCAACCAGGTGCACTTTTAGGAGATGACCAAATTTACAATGTTATCGTAACTGCCCATGCTTTTGTTATAATTTTCTTCATAGTAATACCAATAATAATTGGA
|
|
939
|
+
s rn4.chrM 4957 579 + 16300 TCAAAGCCCTTAGA--AAAC---AAA-CAAGTTTAACTTCTG--------A------------TAAGGACTGTAAGACTATA-TC--TTACATCTGTTAAA--TGCAAATCAAC---------TGCTTTA-------AT-TAAGCTAAATCCTC--------AA-CTAGATTGGAAGGAATCAAATTCCTACG-AAA---ATTTAGTTAACAGCTAAATAC-CCTA---CT-TACTGGCTTCAATCTA-CTTCTCCC--GCCT--A--T------CAGAAAA--GA-GGCGGGA-----GAAGCCTTAGTA-GAGGAGATT-CTCTACACCTTCGAAC-----------------TTGCAATTCGACATGA-TAAT---CACCTT----AAGGCTTTT------------------TGGTAAAAAGG--GGGCTCAA-CCCCTGTCTTTAGATTTACAGTCTAATGCT---T----ACTCAGCCATTTTA----------------------------------CC-----------TATG---TTCGTAAACCGTTGACTCTTTTCAACTAACCACAAAGATATCGGAACCCTCTACCTATTATTTGGAGCCTGAGCAGGAATAGTAGGGACAGCTTTGAGTATTCTAATTCGAGCTGAACTAGGACAGCCAGGCGCACTCCTAGGAGATGACCAAATCTATAATGTCATCGTCACAGCCCATGCATTCGTAATAATTTTCTTTATAGTAATACCTATAATAATTGGA
|
|
940
|
+
i rn4.chrM C 0 C 0
|
|
941
|
+
s oryCun1.scaffold_140182 5148 581 + 20791 TCAAAGCTCTAAGC--AAGT---AGATCATACTTAACCCCTG--------CT-----------TAAGGACTGCAAA--TTAA-CT--TTACATCTCCTGAA--TGCAAACCAGG---------TGCTTTA-------AT-TAAGCTAAATCCTC-----------CTAGATTGGTGGGCTCCAAC--CCCACG-AAG---CTTTAGTTAACAGCTAAATAC-CCTAG--TC-AACTGGCTTCAACCTA-CTTCTCCC--GCCGTAA--G------AAAAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GAGTT--GA-AGCTGCTTCTTTGAAT-----------------TTGCAATTCAATATGT-GAGTACCCACCTC----AGGGCTT---------------------GGTAAAAAGA--GGGCTTAA-CCTCTGTCTTTAGATTTACAGTCTAATACC---T----ACTCGGCCATTTTA----------------------------------CCCTT-----ACTTATG---TTCGTCAATCGTTGACTTTTCTCTACCAACCACAAAGACATCGGCACTCTTTATCTCCTATTTGGAGCTTGAGCTGGGATGGTGGGAACAGCCCTTAGCCTGCTAATTCGAGCAGAATTAGGTCAGCCAGGGACTCTACTCGGGGATGATCAAATCTATAATGTAATCGTCACCGCACATGCCTTTGTAATAATCTTCTTTATAGTCATACCTAT-ATAATTGGA
|
|
942
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
943
|
+
s hg18.chrM 5544 588 + 16571 TCAAAGCCCTCAGT--AAGT---TGC-AATACTTAATTTCTGCAACAG--C------------TAAGGACTGCAAAACCCCA-CT--CTGCATCAACTGAA--CGCAAATCAGC---------CACTTTA-------AT-TAAGCTAAGCCCTT---------A-CTAGACCAATGGGACTTAAA--CCCACA-AAC---ACTTAGTTAACAGCTAAGCAC-CCTAA--TC-AACTGGCTTCAATCTA-CTTCTCCC--GCCG--C--C------GGGAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GGTTT--GA-AGCTGCTTCTTCGAAT-----------------TTGCAATTCAATATGA-AAAT---CACCTC----GGAGCT----------------------GGTAAAAAG---AGGCCTAA-CCCCTGTCTTTAGATTTACAGTCCAATGCT---T---CACTCAGCCATTTTA----------------------------------CCTCACCCCCACTGATG---TTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAATACCCATCATAATCGGA
|
|
944
|
+
i hg18.chrM C 0 C 0
|
|
945
|
+
s panTro2.chrM 4961 587 + 16554 TCAAAGCCCTCAGC--AAGT---TAC-AATACTTAATTTCTGCAACAA--C------------TAAGGACTGCAAAACCCCA-CT--CTGCATCAACTGAA--CGCAAATCAGC---------CACTTTA-------AT-TAAGCTAAGCCCTT---------A-CTAGATTAATGGGACTTAAA--CCCACA-AAC---ATTTAGTTAACAGCTAAACAC-CCTAA--TC-AACTGGCTTCAATCTA-CTTCTCCC--GCCG--C--A------AGAAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GGTTT--GA-AGCTGCTTCTTCGAAT-----------------TTGCAATTCAATATGA-AAAT---CACCTC----AGAGCT----------------------GGTAAAAAG---AGGCTTAA-CCCCTGTCTTTAGATTTACAGTCCAATGCT---T---CACTCAGCCATTTTA----------------------------------CCCCA-CCCTACTGATG---TTCACCGACCGCTGACTATTCTCTACAAACCACAAAGATATTGGAACACTATACCTACTATTCGGTGCATGAGCTGGAGTCCTGGGCACAGCCCTAAGTCTCCTTATTCGGGCTGAACTAGGCCAACCAGGCAACCTCCTAGGTAATGACCACATCTACAATGTCATCGTCACAGCCCATGCATTCGTAATAATCTTCTTCATAGTAATGCCTATTATAATCGGA
|
|
946
|
+
i panTro2.chrM C 0 C 0
|
|
947
|
+
s rheMac2.chr5 34440937 590 - 182086969 TCAAAGTCCTTAGT--AAGTA--AGT-TACTCTTAATTTCTGTAACAGATC------------TAAAGATGGCAAGATGCTA-TT--CTGCATCAATTGAA--CGCAAATCAAC---------CACTTTG-------AT-TAAGCTAAGCCCTT---------A-CTAGATTTATGGAATTCAAA--CCCACG-AATAAAATTTAGTTAACGGCTAAGCAC-CCTAA--TC-AACTGGCTTCAATCTA-CCCCCGCC--GCCG--T--T------GGGGGAG--AA-AGGCAGA-----GAAGACCCAGCA-GGATT--GA-AGCTTCTCCTTTGACT-----------------TTGCAATTCAACATGAGAAAT---CACCTC----AGGGCT----------------------GCTAAAAAGC--AGCCTTGA-CCTCTGTCTTTAGATTTACAGTCTAATGCT---T----ACTCAGCCATTTTA----------------------------------CCTTTTCCCCACTTATG---TTCATCAATCATTGATTGTTTTCAGCTAACCACGAAGATATCGGAACACTATACCTGCTAT--GGCGC---AGTGGAGATAGTAGGCACCGCCTTAAGCCTTCTAATTCCAGCAGAACTAGGCCAACCAGGAACTCTGCTAGGAGATGATCAGATCTACAATGTTATTGTTACCGCTCACACATTCGTTATAATTTTATTTATGATAACACTAATCATGATTGGG
|
|
948
|
+
i rheMac2.chr5 C 0 C 0
|
|
949
|
+
s bosTau2.chrM 5337 577 + 16338 TCAAAGCCCTAAGC--AAGTA--CAA-TTTACTTAATTCCTG--------A------------TAAGGATTGCAAGACTACA-CC--TTACATCAATTGAA--TGCAAATCAAC---------CACTTTA-------AT-TAAGCTAAATCCTC---------A-CTAGACTGGTGGGCTCCACC--CCCACG-AAA---CTTTAGTTAACAGCTAAACAC-CCTAG--CT-AACTGGCTTCAATCTA-CTTCTCCC--GCCG--CA-A------GAAAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GAATT--GA-AGCTGCTTCTCTGAAT-----------------TTGCAATTCAACGTGT-AAAT--TCACCAC----AGGGCTT---------------------GGTAAAAAGA--GGAGTCAAACCTCTATCTTTAGATTTACAGTCTAATGCT---T---TGCTCAGCCATTTTA----------------------------------CC-----------CATG---TTCATTAACCGCTGACTATTCTCAACCAACCATAAAGATATTGGTACCCTTTATCTACTATTTGGTGCTTGGGCCGGTATAGTAGGAACAGCTCTAAGCCTTCTAATTCGCGCTGAATTAGGCCAACCCGGAACTCTGCTCGGAGACGACCAAATCTACAACGTAGTTGTAACCGCACACGCATTTGTAATAATCTTCTTCATAGTAATACCAATCATAATTGGA
|
|
950
|
+
i bosTau2.chrM C 0 C 0
|
|
951
|
+
s canFam2.chrM 4986 590 + 16727 TCAAAGCTCTAAGC--AAGTG--CTA-CACACTTAACCCCTG--------ATCAAATCACCTCTAAGGGCTGCAAGAATCTA-TC--TTACATCAATTGAA--TGCAAATCAAA---------CACTTTA-------AT-TAAGCTAAGCCCTC---------C-CTAGATTGGTGAGCTTCTAC--CTCACG-AAA---TTTTAGTTAACAGCTAAATAC-CCTAG---T-AACTGGCTTCAATCTACCTTCTCCC--GCCG--CGTA------GAAAAAA--AA-GGCGGGA-----GAAGCCCCGGCG-GCGTC--TA-GGCTGCTTCTTTGAAT-----------------TTGCAATTCAATATGA-AAAT--TCACCAC----GGAGCTT---------------------GGCAAAAAGA--GGACTTAAACCCCTATCTTTAGATTTACAGTCTAATGCT---T---TTATCAGCCATTTTA----------------------------------CC-----------TATG---TTCATTAACCGATGACTGTTCTCCACTAATCACAAGGATATTGGTACTTTATACTTACTATTTGGAGCATGAGCCGGTATAGTAGGCACTGCTTTGAGCCTCCTCATCCGAGCCGAACTAGGTCAGCCCGGTACTTTACTAGGTGACGATCAAATTTATAATGTCATCGTAACCGCCCATGCTTTCGTAATAATCTTCTTCATAGTCATGCCCATCATAATTGGG
|
|
952
|
+
i canFam2.chrM C 0 C 0
|
|
953
|
+
s dasNov1.scaffold_23239 8800 579 - 16977 TCAAAGCCCTTAGC--AAGTA--AAA-ATTACTTAATCCCTG--------ACG----------TAAGGACTGCAAGATTTAG-CC--CCACATCTCCTGAA--CGCAAATCAGG---------CACTTTA-------AT-TAAGCTAAGTCCTC---------T-CTAGACTGGTGGGCTCCAAC--CCCACG-AAA---TTTTAGTTAACAGCTAAATAC-CATAA--TC-ACCTGGCTTCAATCTA----TTCCC--ACCT--C--A------AAAACAA--GC-CAAAGGAATCATAAAGCCCTGGCA-GAGTT--TACAGCTGCTTCTCTGAAC-----------------TTGCAATTCAA-ATAG-TATT--------C----AAGGCTTAT--------------TTAATGGTAAAAAAA--GGACTTCA-CCTTTGTCTTTAGATTTACAGTCTAATGCT---T----ACTCAGCCATTTTA----------------------------------CC-----------CATG---TTCATTACCCGTTGACTATTTTCAACAAACCACAAAGATATTGGAACTCTATATTTACTATTTGGCGCCTGGGCTGGAATAGTAGGCACCGCCCTAAGTCTACTAATTCGTGCCGAGCTTGGCCAACCAGGCACATTACTAGGAGACGATCAAATTTATAATGTAATTGTTACCGCCCATGCATTCATCATAATTTTCTTTATAGTAATACCAATCATGATCGGG
|
|
954
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
955
|
+
s loxAfr1.scaffold_36650 7984 579 + 16266 TCAAAGCCCTAAGT--AAGTA--CAT-TATACTTAACTCCTG----AA--A------------TAAGGACTGCAAGATACTA-TC--TTACATCAACTGAA--TGCAAATCAGA---------CGCTTTA-------AC-TAAACTAAGCCCT----------T-CTAGATTGGAGGGCTTCAAT--CCCACGAAAT---TCTTAGTTAACAACTAAACAC-CCTAG--CT-AACTGGCTTCAATCTA-CTTCTCCC--GCCT--T--GAGGGAGGGGGAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GAATT--GA-AGCTGCTTCTTCGAAT-----------------TTGCAGTTCGACATGT-TTAC--AC-TTTC----AAGGCCT---------------------GGCAAAAA----GAGATTAC-TCTCTGTGGTTAGATTTACAGTCTAATGCC---T----ACTCAGCCATTTTA----------------------------------CC-----------TATG---TTTGCTAACCGCTGACTATATTCAACGAACCACAAAGATATCGGAACACTGTATCTATTATTTGGTGCTTGAGCTGGTATAGTAGGGACTGCTTTTAGTATCCTAATTCGGGCAGAACTAGGCCAACCAGGCTCTCTTCTTGGAGATGATCAAATCTACAATGTTATTGTCACAGCACACGCCTTCGTAATAATCTTCTTTATAGTCATGCCAATTATAATTGGA
|
|
956
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
957
|
+
s echTel1.scaffold_181343 4352 619 + 18297 TCAAAGCTCTAAGC--AAGTA--AAC-AATACTTACCCTCTG-----A--A------------TAAGGACTGCAAGACTGTACTC--TTACATCAATTGGA--CGCAAACCAAA---------CACTTTA-------ACTTAAGCTAAATCC-----------T-CTAGATTGATGGGGTTTAAA--CCCATG-AAC---TATTAGTTAACAGCTAATTAC-CCTAC--CTCAACTGGCTTCAATCTA-C-TCTCCC--GCCT--T--T-GAATAGAAAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GATTT--GA-AGCTGCTTCTTCGAAT-----------------TTGCAATTCAATATGA-ATAC--TCACTTC----AGAGCCT---------------------AGTAAAAAGGAGGAGCCTCC-CTCCTGTCTTTAGATTTACAGTCTAATGCCTATT----ACTCAGCCATTTTACTTTCATATATTAGAACTTCCTTCTATACCCTTTCT-----------TATG---TTCATAAACCGTTGACTATACTCTACTAACCATAAAGACATTGGAACCCTCTACTTATTATTCGGAGCTTGAGCTGGCACAGTAGGAACTGCTCTTAGCCTCCTAATCCGTGCTGAACTCGGACAGCCAGGAGCCCTACTAGGTGATGATCAAATCTATAACGTAATCGTAACTGCACACGCCTTCGTTATAATTTTCTTTATAGTTATACCCATTATGATTGGG
|
|
958
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
959
|
+
s monDom4.chrUn 117156419 635 + 174229318 CGAACGCTTTAATT--AAGC---TAA-ACCCTTAAACTACTA--------T------------TTAAACCTCGGTAGCTTTA-CTAACTAC-TTTTTTGAATTTGCAATTCAACGTATTAATATACTTCAAGATTAGAT-TATCCTAAAGGCTTAGGATAAAAT-CTAGACCGAAGG----------CCTTCA-AAG---CCTTAAGCAGGTGATAAATCCACCTAGCCTT-TACTAATTAC-ATCAA-GCTCTCCC--GCCT--TG-G------AGAAAAA--AA-GGCGGGA-----GAGCCCCGGGCA-GCCCT--ATTAATTGTTTCATAAACTAAACTGGTGGGTATTTATCCCACTCTATCTTAA-TTAA---CAGTTA----AGCGCCTGTCTTTCGGCCTCAGTTTAGTGGTAAAAAGA--GATGTTAT-TCTCTGTCTTTGAATTTACAGTTCAATGCC---T---AGCTCAGCCATTTTA----------------------------------CC-----------TATG---TTCATTAATCGTTGACTCTTCTCAACTAACCATAAAGATATTGGTACTTTATATTTATTATTTGGTGCTTGAGCAGGAATAGTTGGAACCGCACTAAGCCTCCTAATTCGAGCAGAATTAGGCCAACCAGGGACTCTAATTGGTGATGATCAAATTTATAACGTAATCGTAACTGCCCACGCTTTCGTTATAATTTTCTTCATAGTAATACCTATCATGATTGGA
|
|
960
|
+
i monDom4.chrUn C 0 C 0
|
|
961
|
+
s galGal2.chrM 6316 559 + 16775 TCAAAGCCTTAAAT--AAGAGTTAAA-CTCTCTTAGTTTCTG-CCCAA--C------------TAAGACCAACAGGACATTA-AC--CTGTATCTCCTGAA--TGCAAATCAGA---------CGCTTTA-------AT-TAAGCTAAGGCCTC-------TAC-CTAGACAGATGGGCTTCGAT--CCCATA-CAA---TTTTAGTTAACAGCTAAATGC-CAACA--CC-AATTGGCTTCTGCCTA-----------------C--A------------------------------GA--CCCCGGCA-CACTT--TA-GTGTACATCAACGAGT-----------------TTGCAACTCATTATGA-ACTT---CACTAC----AGAGTC----------------------GATAAGAAGA--GGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCT---TCAACACTCAGCCATCTTA----------------------------------CC-----------TGTGACCTTCATCAACCGATGATTATTCTCAACCAACCACAAAGACATTGGCACTCTTTACCTAATTTTCGGCACATGGGCGGGCATAGCCGGCACAGCACTTAGCCTTCTAATTCGCGCAGAACTAGGACAGCCCGGAACTCTCTTAGGAGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTCGTCATAATCTTCTTTATAGTTATACCCATCATGATCGGT
|
|
962
|
+
i galGal2.chrM C 0 C 0
|
|
963
|
+
s tetNig1.chrUn_random 161619026 580 + 171761319 TCAAAGCCCTCAGCGGGAGTG--AAA-ATCTCCCAGTCCCTG--------A------------TAAGACTTGCGGGACACTA-CC--CCACATCTCCTGCA--TGCAAAACAGA---------CACTTTA-------AT-TAAGCTAAAGCCTT---------ACCTAGACAGGCAGGCCTCGAT--CCTACA-AAC---TCTTAGTTAACAGCTAAGCGC-TCAAA--CC-AGCGAGCATCTATCTA-CCTTTCCCCGCCTG--T--C------AAAACAA--AA-GGCGGGG-----AAAGCCCCGGCA-GACGT--CA-ATCTGCTTCTTTAGAT-----------------TTGCAATCTAACATGT---AA---CACCCC----AGGGCTT---------------------GGTAGAAAGA--GGAATTTAACCTCCGTACGTGGGGCTACAATCCACCGCT---T-AACACTCAGCCATCCTA----------------------------------CC-----------TGTG---GCAATCACACGCTGATTTTTCTCAACCAACCATAAAGACATCGGCACCCTCTACCTAGTATTTGGTGCCTGAGCCGGAATAGTGGGAACGGCCCTTAGCCTCCTCATCCGAGCTGAACTTAGCCAACCAGGCGCACTCTTGGGTGATGACCAGATTTATAATGTAATCGTCACAGCCCATGCATTTGTAATAATTTTCTTTATAGTAATGCCAATCATGATTGAA
|
|
964
|
+
i tetNig1.chrUn_random N 0 N 0
|
|
965
|
+
s danRer4.chrM 6068 584 + 16596 TCAAAGCTCTCAGTAGAAGTG--AAA-ATCTTCTAGTCTCTG--------A------------TAGGACTTAC-AGACGTTA-CT--CCGCATCTTCTAAA--TGCAAATCAGA---------TATTTTA-------AT-TAAACTAAAGCCCT---------A-CTAGATGGGAAGGCCTCGAT--CCTACA-AAA---TCTTAGTTAACAGCTAAGCGC-CCAAG--CC-AGCGAGCATCCATCTA-CTTTTCCC--GCCG--T--T------GAACCCGGTAA-GGCGGGA-----AAAGCCCCGGCAGGAGGT--TT-ACCTGCGTCTTCAGAT-----------------TTGCAATCTGATATGT---AT---CATCACCACGAGGCCAT---------------------GGTAGAAAAA--GGACTCAAACCTCTGTCCGCGGAGCTACAATCCGCCGCC---TAAACACTCGGCCACCCTA----------------------------------CC-----------TGTG---ACAATCACACGTTGATTTTTCTCAACTAATCATAAAGACATTGGCACCCTGTATCTAGTATTTGGTGCTTGAGCCGGAATAGTAGGGACCGCATTAAGCCTCTTAATCCGAGCTGAACTTAGCCAACCAGGAGCACTTCTTGGTGATGATCAAATCTATAATGTTATTGTTACTGCCCATGCTTTTGTAATAATTTTCTTTATAGTAATACCCATTCTTATTGGG
|
|
966
|
+
i danRer4.chrM C 0 C 0
|
|
967
|
+
e xenTro2.scaffold_96 2673319 6355 - 2855184 I
|
|
968
|
+
|
|
969
|
+
a score=799335.000000
|
|
970
|
+
s mm8.chrM 5555 131 + 16299 GGCTTTGGAAACTGACTTGTCCCACTAATAATCGGAGCCCCAGATATAGCATTCCCACGAATAAATAATATAAGTTTTTGACTCCTACCACCATCATTTCTCCTTCTCCTAGCATCATCAATAGTAGAAGC
|
|
971
|
+
s rn4.chrM 5536 131 + 16300 GGCTTCGGAAACTGACTTGTACCACTAATAATTGGAGCCCCTGATATAGCATTCCCACGAATAAATAACATAAGCTTTTGACTGCTTCCTCCATCATTTCTACTCCTTTTAGCATCCTCCATAGTAGAAGC
|
|
972
|
+
i rn4.chrM C 0 C 0
|
|
973
|
+
s oryCun1.scaffold_140182 5729 131 + 20791 GGCTTCGGGAACTGGCTTGTCCCCCTGATAATTGGGGCTCCTGACATAGCCTTCCCCCGAATAAATAATATGAGCTTCTGACTTCTCCCCCCTTCATTCCTTCTTCTACTAGCCTCCTCAATAGTAGAAGC
|
|
974
|
+
i oryCun1.scaffold_140182 C 0 M 264
|
|
975
|
+
s hg18.chrM 6132 131 + 16571 GGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCCCCGATATGGCGTTTCCCCGCATAAACAACATAAGCTTCTGACTCTTACCTCCCTCTCTCCTACTCCTGCTCGCATCTGCTATAGTGGAGGC
|
|
976
|
+
i hg18.chrM C 0 C 0
|
|
977
|
+
s panTro2.chrM 5548 131 + 16554 GGCTTTGGCAACTGGCTAGTTCCCTTGATAATTGGTGCCCCCGACATGGCATTCCCCCGCATAAACAACATAAGCTTCTGGCTCCTGCCCCCTTCTCTCCTACTTCTACTTGCATCTGCCATAGTAGAAGC
|
|
978
|
+
i panTro2.chrM C 0 C 0
|
|
979
|
+
s rheMac2.chr5 34441527 131 - 182086969 GTTTTCGGCAACTGGCTAGTCCCTCTGACCATTGGTTGACTGGACATGGCATCCCCCTGAATAAATAATATGATTTTCTGACTTCTCCCCCTATCTTTTCTACTCCTACTTGCGTCTTCAATAGTAGAAGC
|
|
980
|
+
i rheMac2.chr5 C 0 C 0
|
|
981
|
+
s bosTau2.chrM 5914 131 + 16338 GGATTCGGTAACTGACTTGTTCCCCTAATAATTGGTGCTCCCGATATAGCATTTCCCCGAATAAATAATATAAGCTTCTGACTCCTCCCTCCCTCATTCCTACTACTCCTCGCATCCTCTATAGTTGAAGC
|
|
982
|
+
i bosTau2.chrM C 0 C 0
|
|
983
|
+
s canFam2.chrM 5576 131 + 16727 GGCTTTGGAAACTGACTAGTGCCGTTAATAATTGGTGCTCCGGACATGGCATTCCCCCGAATAAATAACATGAGCTTCTGACTCCTTCCTCCATCCTTTCTTCTACTATTAGCATCTTCTATGGTAGAAGC
|
|
984
|
+
i canFam2.chrM C 0 C 0
|
|
985
|
+
s dasNov1.scaffold_23239 9379 131 - 16977 GGCTTCGGAAACTGATTAGTCCCATTAATAATTGGCGCGCCCGATATAGCCTTCCCACGAATAAACAACATAAGTTTCTGACTATTACCCCCTTCATTCCTACTCCTACTAGCCTCCTCTATAGTAGAAGC
|
|
986
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
987
|
+
s loxAfr1.scaffold_36650 8563 131 + 16266 GGCTTTGGAAACTGGTTAATTCCACTTATAATTGGAGCACCTGATATAGCTTTTCCTCGAATAAACAATATGAGTTTTTGACTACTGCCTCCATCTTTCCTACTACTTTTAGCATCCTCTATAGTAGAAGC
|
|
988
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
989
|
+
s echTel1.scaffold_181343 4971 131 + 18297 GGATTTGGTAACTGACTGATCCCATTAATGATTGGTGCCCCTGACATAGCTTTCCCCCGAATAAATAACATAAGTTTCTGGCTCCTTCCCCCCTCTTTTCTTCTTCTGTTAGCTTCATCTATAGTTGAAGC
|
|
990
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
991
|
+
s monDom4.chrUn 117157054 131 + 174229318 GGTTTTGGTAACTGACTAGTACCACTAATAATTGGAGCACCAGATATAGCATTTCCCCGAATAAATAATATAAGTTTCTGACTACTACCACCCTCATTCCTTCTTTTACTAGCATCATCCACAGTTGAAGC
|
|
992
|
+
i monDom4.chrUn C 0 C 0
|
|
993
|
+
s galGal2.chrM 6875 131 + 16775 GGCTTCGGAAACTGACTAGTCCCACTTATAATCGGTGCCCCAGACATAGCATTCCCCCGCATAAATAACATAAGCTTCTGACTCCTCCCTCCCTCCTTCCTTCTCCTACTAGCCTCATCTACCGTAGAAGC
|
|
994
|
+
i galGal2.chrM C 0 C 0
|
|
995
|
+
s tetNig1.chrUn_random 417498 131 - 171761319 GGTTTTGGTAATTGGTTTGTTCCTTTGATGTTGGGAGCTCCAGATATAGCATTTCCAAGGTTGAACAACATTAGTTTTTGGCTTTTGCCACCTTCTTTGCTTCTATTGGTAAGTTCTTCTTTGGTAGAGGC
|
|
996
|
+
i tetNig1.chrUn_random N 0 C 0
|
|
997
|
+
s danRer4.chrM 6652 131 + 16596 GGATTTGGAAACTGACTTGTGCCACTAATGATTGGGGCCCCCGATATGGCATTTCCCCGAATAAATAATATAAGCTTCTGACTTCTTCCACCCTCATTTCTTCTTCTATTAGCTTCTTCTGGAGTTGAAGC
|
|
998
|
+
i danRer4.chrM C 0 C 0
|
|
999
|
+
e xenTro2.scaffold_96 2673319 6355 - 2855184 I
|
|
1000
|
+
|