bio-maf 0.2.0-java → 0.3.0-java
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- data/.gitignore +1 -0
- data/Gemfile +3 -1
- data/README.md +98 -29
- data/Rakefile +6 -2
- data/bin/maf_tile +59 -35
- data/bio-maf.gemspec +4 -3
- data/features/block-joining.feature +32 -0
- data/features/dir-access.feature +46 -0
- data/features/maf-indexing.feature +23 -0
- data/features/maf-to-fasta.feature +9 -0
- data/features/slice.feature +54 -0
- data/features/step_definitions/dir-access_steps.rb +15 -0
- data/features/step_definitions/file_steps.rb +7 -0
- data/features/step_definitions/gap_removal_steps.rb +4 -0
- data/features/step_definitions/index_steps.rb +3 -3
- data/features/step_definitions/output_steps.rb +9 -1
- data/features/step_definitions/parse_steps.rb +13 -2
- data/features/step_definitions/query_steps.rb +7 -6
- data/features/step_definitions/slice_steps.rb +15 -0
- data/features/step_definitions/{gap-filling_steps.rb → tiling_steps.rb} +0 -0
- data/features/support/aruba.rb +1 -0
- data/features/support/env.rb +3 -1
- data/features/{gap-filling.feature → tiling.feature} +85 -0
- data/lib/bio/maf/index.rb +223 -11
- data/lib/bio/maf/maf.rb +209 -0
- data/lib/bio/maf/parser.rb +190 -111
- data/lib/bio/maf/tiler.rb +33 -6
- data/man/maf_index.1 +1 -1
- data/man/maf_tile.1 +7 -7
- data/man/maf_tile.1.ronn +21 -13
- data/man/maf_to_fasta.1 +1 -1
- data/spec/bio/maf/index_spec.rb +99 -0
- data/spec/bio/maf/maf_spec.rb +184 -0
- data/spec/bio/maf/parser_spec.rb +75 -115
- data/spec/bio/maf/tiler_spec.rb +44 -0
- data/test/data/chr22_ieq2.maf +11 -0
- data/test/data/gap-1.kct +0 -0
- data/test/data/gap-1.maf +9 -0
- data/test/data/gap-filled1.fa +6 -0
- data/test/data/gap-sp1.fa.gz +0 -0
- data/test/data/mm8_chr7_tiny_slice1.maf +9 -0
- data/test/data/mm8_chr7_tiny_slice2.maf +10 -0
- data/test/data/mm8_chr7_tiny_slice3.maf +10 -0
- data/test/data/mm8_chrM_tiny.kct +0 -0
- data/test/data/mm8_chrM_tiny.maf +1000 -0
- metadata +65 -16
data/spec/bio/maf/parser_spec.rb
CHANGED
|
@@ -3,121 +3,6 @@ require 'spec_helper'
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3
3
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module Bio
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|
4
4
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module MAF
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5
5
|
|
|
6
|
-
describe Header do
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|
7
|
-
before(:each) do
|
|
8
|
-
@p = Parser.new(TestData + 't1.maf')
|
|
9
|
-
end
|
|
10
|
-
|
|
11
|
-
it "provides version information" do
|
|
12
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-
@p.header.version.should == '1'
|
|
13
|
-
end
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14
|
-
it "provides the scoring scheme" do
|
|
15
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-
@p.header.scoring.should == 'humor.v4'
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|
16
|
-
end
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|
17
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-
it "provides alignment parameters" do
|
|
18
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-
@p.header.alignment_params.should =~ /humor.v4 R=30/
|
|
19
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-
end
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|
20
|
-
|
|
21
|
-
it "presents multiline parameters correctly" do
|
|
22
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-
@p.header.alignment_params.should == "humor.v4 R=30 M=10 /cluster/data/hg15/bed/blastz.mm3/axtNet300/chr1.maf /cluster/data/hg15/bed/blastz.rn3/axtNet300/chr1.maf"
|
|
23
|
-
end
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|
24
|
-
|
|
25
|
-
it "provides arbitrary parameters"
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|
26
|
-
end
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|
27
|
-
|
|
28
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-
describe Block do
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|
29
|
-
describe "#find_gaps" do
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|
30
|
-
it "finds a single 14-base gap" do
|
|
31
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-
p = Parser.new(TestData + 'mm8_chr7_tiny.maf')
|
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32
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-
p.sequence_filter = { :only_species => %w(mm8 rn4 hg18 canFam2 loxAfr1) }
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33
|
-
block = p.parse_block
|
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34
|
-
gaps = block.find_gaps
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35
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-
gaps.size.should == 1
|
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36
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-
gaps[0][0].should == 34
|
|
37
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-
gaps[0][1].should == 14
|
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38
|
-
end
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39
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-
end
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|
40
|
-
describe "#remove_gaps!" do
|
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41
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-
it "removes a single 14-base gap" do
|
|
42
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-
p = Parser.new(TestData + 'mm8_chr7_tiny.maf')
|
|
43
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-
p.sequence_filter = { :only_species => %w(mm8 rn4 hg18 canFam2 loxAfr1) }
|
|
44
|
-
block = p.parse_block
|
|
45
|
-
block.sequences.size.should == 5
|
|
46
|
-
block.text_size.should == 54
|
|
47
|
-
block.remove_gaps!
|
|
48
|
-
block.text_size.should == 40
|
|
49
|
-
end
|
|
50
|
-
end
|
|
51
|
-
end
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|
52
|
-
|
|
53
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-
describe Sequence do
|
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54
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-
before(:each) do
|
|
55
|
-
@parser = DummyParser.new
|
|
56
|
-
end
|
|
57
|
-
|
|
58
|
-
describe "#gapped?" do
|
|
59
|
-
it "is false for sequences with no gaps" do
|
|
60
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-
line = "s human_unc 9077 8 + 10998 ACAGTATT"
|
|
61
|
-
s = @parser.parse_seq_line(line, nil)
|
|
62
|
-
s.gapped?.should be_false
|
|
63
|
-
end
|
|
64
|
-
it "is true for sequences with gaps" do
|
|
65
|
-
line = "s human_unc 9077 8 + 10998 AC-AGTATT"
|
|
66
|
-
s = @parser.parse_seq_line(line, nil)
|
|
67
|
-
s.gapped?.should be_true
|
|
68
|
-
end
|
|
69
|
-
end
|
|
70
|
-
|
|
71
|
-
describe "#text_range" do
|
|
72
|
-
it "returns 0...text.size for a spanning interval" do
|
|
73
|
-
line = "s human_unc 9077 8 + 10998 ACAGTATT"
|
|
74
|
-
s = @parser.parse_seq_line(line, nil)
|
|
75
|
-
range = s.text_range(9077...(9077 + 8))
|
|
76
|
-
range.should == (0...(s.text.size))
|
|
77
|
-
end
|
|
78
|
-
it "returns 0...text.size for a gapped spanning interval" do
|
|
79
|
-
line = "s human_unc 9077 8 + 10998 AC--AGTATT"
|
|
80
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-
s = @parser.parse_seq_line(line, nil)
|
|
81
|
-
range = s.text_range(9077...(9077 + 8))
|
|
82
|
-
range.should == (0...(s.text.size))
|
|
83
|
-
end
|
|
84
|
-
it "handles a leading subset" do
|
|
85
|
-
line = "s human_unc 9077 8 + 10998 ACAGTATT"
|
|
86
|
-
s = @parser.parse_seq_line(line, nil)
|
|
87
|
-
range = s.text_range(9077...(9077 + 2))
|
|
88
|
-
range.should == (0...2)
|
|
89
|
-
end
|
|
90
|
-
it "handles a trailing subset" do
|
|
91
|
-
line = "s human_unc 9077 8 + 10998 ACAGTATT"
|
|
92
|
-
s = @parser.parse_seq_line(line, nil)
|
|
93
|
-
range = s.text_range(9079...9085)
|
|
94
|
-
range.should == (2...8)
|
|
95
|
-
end
|
|
96
|
-
it "handles a gap in the middle" do
|
|
97
|
-
line = "s human_unc 9077 8 + 10998 AC--AGTATT"
|
|
98
|
-
s = @parser.parse_seq_line(line, nil)
|
|
99
|
-
range = s.text_range(9078...(9077 + 8))
|
|
100
|
-
range.should == (1...(s.text.size))
|
|
101
|
-
end
|
|
102
|
-
it "errors on a range starting before" do
|
|
103
|
-
expect {
|
|
104
|
-
line = "s human_unc 9077 8 + 10998 ACAGTATT"
|
|
105
|
-
s = @parser.parse_seq_line(line, nil)
|
|
106
|
-
range = s.text_range(9076...(9077 + 8))
|
|
107
|
-
}.to raise_error
|
|
108
|
-
end
|
|
109
|
-
it "errors on a range ending after" do
|
|
110
|
-
expect {
|
|
111
|
-
line = "s human_unc 9077 8 + 10998 ACAGTATT"
|
|
112
|
-
s = @parser.parse_seq_line(line, nil)
|
|
113
|
-
range = s.text_range(9076...(9077 + 9))
|
|
114
|
-
}.to raise_error
|
|
115
|
-
end
|
|
116
|
-
|
|
117
|
-
end
|
|
118
|
-
|
|
119
|
-
end
|
|
120
|
-
|
|
121
6
|
describe ParseContext do
|
|
122
7
|
it "tracks the last block position"
|
|
123
8
|
end
|
|
@@ -247,6 +132,20 @@ module Bio
|
|
|
247
132
|
blocks = @p.fetch_blocks(fl).to_a
|
|
248
133
|
blocks.size.should == 2
|
|
249
134
|
blocks.collect {|b| b.offset}.should == [16, 3011]
|
|
135
|
+
end
|
|
136
|
+
it "does not return empty blocks" do
|
|
137
|
+
fl = [[16, 1087]]
|
|
138
|
+
@p.sequence_filter = { :only_species => %w(jabberwocky unicorn) }
|
|
139
|
+
blocks = @p.fetch_blocks(fl).to_a
|
|
140
|
+
blocks.size.should == 0
|
|
141
|
+
end
|
|
142
|
+
it "takes a block argument" do
|
|
143
|
+
fl = [[16, 1087], [1103, 1908], [3011, 2027]]
|
|
144
|
+
n = 0
|
|
145
|
+
@p.fetch_blocks(fl) do |block|
|
|
146
|
+
n += 1
|
|
147
|
+
end
|
|
148
|
+
n.should == 3
|
|
250
149
|
end
|
|
251
150
|
end
|
|
252
151
|
context "with 4K chunk size" do
|
|
@@ -287,6 +186,13 @@ module Bio
|
|
|
287
186
|
end
|
|
288
187
|
end
|
|
289
188
|
|
|
189
|
+
describe "#each_block" do
|
|
190
|
+
it "returns an Enumerator when called without a block" do
|
|
191
|
+
p = described_class.new(TestData + 'mm8_chr7_tiny.maf')
|
|
192
|
+
p.each_block.count.should == 8
|
|
193
|
+
end
|
|
194
|
+
end
|
|
195
|
+
|
|
290
196
|
describe "sequence_filter" do
|
|
291
197
|
before(:each) do
|
|
292
198
|
@p = described_class.new(TestData + 'mm8_mod_a.maf')
|
|
@@ -309,6 +215,10 @@ module Bio
|
|
|
309
215
|
}
|
|
310
216
|
@p.parse_block.filtered?.should be_false
|
|
311
217
|
end
|
|
218
|
+
it "does not return empty blocks" do
|
|
219
|
+
@p.sequence_filter = { :only_species => %w(jabberwocky unicorn) }
|
|
220
|
+
@p.parse_blocks.count.should == 0
|
|
221
|
+
end
|
|
312
222
|
end
|
|
313
223
|
|
|
314
224
|
context "at end of file" do
|
|
@@ -450,6 +360,56 @@ module Bio
|
|
|
450
360
|
end
|
|
451
361
|
end
|
|
452
362
|
|
|
363
|
+
describe ":join_blocks" do
|
|
364
|
+
it "returns joined blocks" do
|
|
365
|
+
p = Parser.new(TestData + 'mm8_chr7_tiny.maf',
|
|
366
|
+
:join_blocks => true)
|
|
367
|
+
p.sequence_filter = {
|
|
368
|
+
:only_species => %w(mm8 rn4 oryCun1 hg18 panTro2 rheMac2 canFam2 loxAfr1 echTel1)
|
|
369
|
+
}
|
|
370
|
+
idx = KyotoIndex.open(TestData + "mm8_chr7_tiny.kct")
|
|
371
|
+
l = idx.find([GenomicInterval.zero_based('mm8.chr7',
|
|
372
|
+
80082334,
|
|
373
|
+
80082471)],
|
|
374
|
+
p).to_a
|
|
375
|
+
l.size.should == 1
|
|
376
|
+
l.first.text_size.should == 210
|
|
377
|
+
end
|
|
378
|
+
end
|
|
379
|
+
|
|
380
|
+
describe ":remove_gaps" do
|
|
381
|
+
it "removes gaps from #parse_blocks" do
|
|
382
|
+
p = Parser.new(TestData + 'mm8_chr7_tiny.maf',
|
|
383
|
+
:remove_gaps => true)
|
|
384
|
+
p.sequence_filter = { :only_species => %w(mm8 rn4) }
|
|
385
|
+
b = p.parse_blocks.first
|
|
386
|
+
b.text_size.should == 34
|
|
387
|
+
end
|
|
388
|
+
it "removes gaps from #parse_block" do
|
|
389
|
+
p = Parser.new(TestData + 'mm8_chr7_tiny.maf',
|
|
390
|
+
:remove_gaps => true)
|
|
391
|
+
p.sequence_filter = { :only_species => %w(mm8 rn4) }
|
|
392
|
+
b = p.parse_block
|
|
393
|
+
b.text_size.should == 34
|
|
394
|
+
end
|
|
395
|
+
end
|
|
396
|
+
|
|
397
|
+
describe ":as_bio_alignment" do
|
|
398
|
+
it "returns bio-alignment objects" do
|
|
399
|
+
p = Parser.new(TestData + 'mm8_chr7_tiny.maf',
|
|
400
|
+
:as_bio_alignment => true)
|
|
401
|
+
idx = KyotoIndex.open(TestData + "mm8_chr7_tiny.kct")
|
|
402
|
+
l = idx.find([GenomicInterval.zero_based('mm8.chr7',
|
|
403
|
+
80082334,
|
|
404
|
+
80082471)],
|
|
405
|
+
p).to_a
|
|
406
|
+
l.size.should == 2
|
|
407
|
+
l.first[0][0].should == 'G'
|
|
408
|
+
l.first[0].id.should == 'mm8.chr7'
|
|
409
|
+
end
|
|
410
|
+
end
|
|
411
|
+
|
|
412
|
+
|
|
453
413
|
end
|
|
454
414
|
|
|
455
415
|
end
|
data/spec/bio/maf/tiler_spec.rb
CHANGED
|
@@ -4,6 +4,47 @@ module Bio::MAF
|
|
|
4
4
|
|
|
5
5
|
describe Tiler do
|
|
6
6
|
|
|
7
|
+
describe "#reference=" do
|
|
8
|
+
it "takes a FASTARangeReader" do
|
|
9
|
+
t = Tiler.new
|
|
10
|
+
t.reference = FASTARangeReader.new((TestData + 'gap-sp1.fa').to_s)
|
|
11
|
+
t.reference.read_interval(0, 3).should == 'CCA'
|
|
12
|
+
end
|
|
13
|
+
it "takes an open file" do
|
|
14
|
+
(TestData + 'gap-sp1.fa').open do |fh|
|
|
15
|
+
t = Tiler.new
|
|
16
|
+
t.reference = fh
|
|
17
|
+
t.reference.read_interval(0, 3).should == 'CCA'
|
|
18
|
+
end
|
|
19
|
+
end
|
|
20
|
+
it "takes a FASTA literal" do
|
|
21
|
+
ref = File.read(TestData + 'gap-sp1.fa')
|
|
22
|
+
t = Tiler.new
|
|
23
|
+
t.reference = ref
|
|
24
|
+
t.reference.read_interval(0, 3).should == 'CCA'
|
|
25
|
+
end
|
|
26
|
+
it "takes a Pathname" do
|
|
27
|
+
t = Tiler.new
|
|
28
|
+
t.reference = TestData + 'gap-sp1.fa'
|
|
29
|
+
t.reference.read_interval(0, 3).should == 'CCA'
|
|
30
|
+
end
|
|
31
|
+
it "takes a path string" do
|
|
32
|
+
t = Tiler.new
|
|
33
|
+
t.reference = (TestData + 'gap-sp1.fa').to_s
|
|
34
|
+
t.reference.read_interval(0, 3).should == 'CCA'
|
|
35
|
+
end
|
|
36
|
+
it "takes a gzipped Pathname" do
|
|
37
|
+
t = Tiler.new
|
|
38
|
+
t.reference = TestData + 'gap-sp1.fa.gz'
|
|
39
|
+
t.reference.read_interval(0, 3).should == 'CCA'
|
|
40
|
+
end
|
|
41
|
+
it "takes a gzipped path string" do
|
|
42
|
+
t = Tiler.new
|
|
43
|
+
t.reference = (TestData + 'gap-sp1.fa.gz').to_s
|
|
44
|
+
t.reference.read_interval(0, 3).should == 'CCA'
|
|
45
|
+
end
|
|
46
|
+
end
|
|
47
|
+
|
|
7
48
|
describe "#runs" do
|
|
8
49
|
it "returns a uniform run properly" do
|
|
9
50
|
a = Array.new(10, 'a')
|
|
@@ -57,6 +98,9 @@ module Bio::MAF
|
|
|
57
98
|
it "returns the entire sequence" do
|
|
58
99
|
check_range(0, 50)
|
|
59
100
|
end
|
|
101
|
+
it "returns a sub-line fragment" do
|
|
102
|
+
check_range(0, 4)
|
|
103
|
+
end
|
|
60
104
|
it "returns an entire line" do
|
|
61
105
|
check_range(10, 20)
|
|
62
106
|
end
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
##maf version=1 scoring=autoMZ.v1
|
|
2
|
+
a score=13668.000000
|
|
3
|
+
s hg19.chr22 16054189 54 + 51304566 TCTGTGAAACCCACAGTAATGGGGCTGACATCCTCTGCCCTATGCAAGAGAGGT
|
|
4
|
+
s ponAbe2.chrUn 13354616 54 + 72422247 TCTTTCAAACCCACAGTAATGGGGCTGACATCCTCTACCATATGCAAGAGAGGT
|
|
5
|
+
q ponAbe2.chrUn 855489998999999899968899889893997969799999879999999989
|
|
6
|
+
i ponAbe2.chrUn N 0 C 0
|
|
7
|
+
s panTro2.chrUn 7684562 54 + 58616431 TCTGTGAAACCCACAGTAATGGGGCTGACATCCTCTGCCCTATGCAAGAGAGAT
|
|
8
|
+
q panTro2.chrUn 999999999999999999999999999999999999999999999999999999
|
|
9
|
+
i panTro2.chrUn C 0 I 146
|
|
10
|
+
e turTru1.scaffold_109008 25049 1601 + 50103 I
|
|
11
|
+
|
data/test/data/gap-1.kct
ADDED
|
Binary file
|
data/test/data/gap-1.maf
ADDED
|
Binary file
|
|
@@ -0,0 +1,9 @@
|
|
|
1
|
+
##maf version=1
|
|
2
|
+
a score=10542.0
|
|
3
|
+
s mm8.chr7 80082350 18 + 145134094 TGGAGGGCGGTCCCAGCA
|
|
4
|
+
s rn4.chr1 136011801 18 + 267910886 CGGAGGGCGGTCCCAGCA
|
|
5
|
+
|
|
6
|
+
a score=-33148.0
|
|
7
|
+
s mm8.chr7 80082368 12 + 145134094 TGAGAGGGCATG
|
|
8
|
+
s rn4.chr1 136011819 12 + 267910886 TGAGAGGGCATG
|
|
9
|
+
|
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
##maf version=1
|
|
2
|
+
a score=30120.0
|
|
3
|
+
s mm8.chr7 80082718 10 + 145134094 CAAAGGCAGC
|
|
4
|
+
s rn4.chr1 136012152 10 + 267910886 CAGAGGCAGC
|
|
5
|
+
s hg18.chr15 88557993 10 + 100338915 CTGAACCAGC
|
|
6
|
+
s panTro2.chr15 87960238 10 + 100063422 CTGAACCAGC
|
|
7
|
+
s rheMac2.chr7 69865091 10 + 169801366 CTGAACCAGC
|
|
8
|
+
s canFam2.chr3 56030954 10 + 94715083 TTGACCCAGC
|
|
9
|
+
s echTel1.scaffold_304651 922 10 - 10007 TCCATCCCAC
|
|
10
|
+
|
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
##maf version=1
|
|
2
|
+
a score=30120.0
|
|
3
|
+
s mm8.chr7 80082757 10 + 145134094 AAGAGATAAA
|
|
4
|
+
s rn4.chr1 136012191 10 + 267910886 AAGAGATAAA
|
|
5
|
+
s hg18.chr15 88558033 10 + 100338915 AAAAGATAAG
|
|
6
|
+
s panTro2.chr15 87960278 10 + 100063422 AAAAGATAAG
|
|
7
|
+
s rheMac2.chr7 69865131 10 + 169801366 AAAAGATGAG
|
|
8
|
+
s canFam2.chr3 56030983 6 + 94715083 ACAA----AG
|
|
9
|
+
s echTel1.scaffold_304651 962 10 - 10007 AAAAGATAAA
|
|
10
|
+
|
|
Binary file
|
|
@@ -0,0 +1,1000 @@
|
|
|
1
|
+
##maf version=1 scoring=autoMZ.v1
|
|
2
|
+
a score=360695.000000
|
|
3
|
+
s mm8.chrM 0 81 + 16299 GTTAATGTAGCTTAA--TAACAAAGCAAAGCACTGAAAATGCTTAGATG-GATAATTG--TA-TCCCATAAAC-ACAAAGGTTTGGTC
|
|
4
|
+
s galGal2.chrM 1234 75 + 16775 -------TAGCTTAAC-CCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACT--AT-ACCTGTGGGC-A-AAAGACTTAGTC
|
|
5
|
+
i galGal2.chrM N 0 C 0
|
|
6
|
+
s oryCun1.scaffold_140182 113 82 + 20791 GTTAATGTAGCTTAA--CAACAAAGCAAAGCACTGAAAATGCTTAGATGAGCCTTCCC--GG-CTCCATAAAC-ATAAAGGTTTGGTC
|
|
7
|
+
i oryCun1.scaffold_140182 N 0 C 0
|
|
8
|
+
s rn4.chrM 2 78 + 16300 --TAATGTAGCTTA---TAATAAAGCAAAGCACTGAAAATGCTTAGATG-GATTCAAA--AA-TCCCATAAAC-ACAAAGGTTTGGTC
|
|
9
|
+
i rn4.chrM N 0 C 0
|
|
10
|
+
s hg18.chrM 578 84 + 16571 GTTTATGTAGCTTACCTCCTCAAAGCAATACACTGAAAATGTTTAGACGGGCTCACAT--CA-CCCCATAAAC-AAATAGGTTTGGTC
|
|
11
|
+
i hg18.chrM N 0 C 0
|
|
12
|
+
s panTro2.chrM 4 80 + 16554 ----ATGTAGCTTACCCCCTCAAAGCAATACACTGAAAATGTTTCGACGGGTTTACAT--CA-CCCCATAAAC-AAACAGGTTTGGTC
|
|
13
|
+
i panTro2.chrM N 0 C 0
|
|
14
|
+
s rheMac2.chr14 30986862 84 - 133002572 GTTAATGTAGCTTAATTATTTACAGCAAGACATTGAAAATGTCTAGATGGGATTACAC--AA-CCCTATAAAC-AGATAAATTTGGTC
|
|
15
|
+
i rheMac2.chr14 N 0 N 0
|
|
16
|
+
s bosTau2.chrM 363 80 + 16338 GTTGATGTAGCTTAAC-C--CAAAGCAAGGCACTGAAAATGCCTAGATG-AGTCTCCC--AA-CTCCATAAAC-ACATAGGTTTGGTC
|
|
17
|
+
i bosTau2.chrM N 0 C 0
|
|
18
|
+
s canFam2.chrM 2 80 + 16727 --TAATGTAGCTTAAT-TAATAAAGCAAGGCACTGAAAATGCCAAGATG-AGTCGCAC--GA-CTCCATAAAC-ATAAAGGTTTGGTC
|
|
19
|
+
i canFam2.chrM N 0 C 0
|
|
20
|
+
s dasNov1.scaffold_23239 3802 82 - 16977 GTCAACGTAGCTTAA--GTCTAAAGCGAGGCACTGAAAATGCCTAAACGAATCCTAAT--GA-TTCCGCAGAC-ACACAGGTCTGGTC
|
|
21
|
+
i dasNov1.scaffold_23239 N 0 C 0
|
|
22
|
+
s loxAfr1.scaffold_36650 3007 83 + 16266 GTTAATGTAGCTTAA--AACAAAAGCAAGGTACTGAAAATACCTAGACGAGTATATCC--AA-CTCCATAAACAACAAAGGTTTGGTC
|
|
23
|
+
i loxAfr1.scaffold_36650 N 0 C 0
|
|
24
|
+
s echTel1.scaffold_49882 260 78 - 7170 GTTAATGTAGCTTAA--TA-AAAAGTGAGGCACTGAAAATGCCTAGATGAGTAT---T--AA-CTCCATAAAC-ATAAAGGTTTGGTT
|
|
25
|
+
i echTel1.scaffold_49882 N 0 C 0
|
|
26
|
+
s monDom4.chrUn 117151420 82 + 174229318 GTTGATGTAGCTTAA--CTTAAAAGCAAAGCACTGAAAATGCTTAGATG-GTTTATACTAAA-ACCCATAAAC-A-AAAGGTTTGGTC
|
|
27
|
+
i monDom4.chrUn N 0 C 0
|
|
28
|
+
s tetNig1.chrUn_random 103509752 81 + 171761319 GCTAGTGTAGCTTAA--TA--AAAGCATAACACTGAAGATGTTAAGATGGGCCCTAGA--AAGCCCCACAGGC-ACAAAGGCTTGGTC
|
|
29
|
+
i tetNig1.chrUn_random N 0 C 0
|
|
30
|
+
s fr1.chrUn 320907090 81 + 349519338 GCTAGCGTAGCTTAA--CC--AAAGCAGAGTACTGAAGATGCTAAGATGGGCCCTGAA--AAGTCCCGCAGGC-ACAAAAGCTTGGTC
|
|
31
|
+
i fr1.chrUn N 0 C 0
|
|
32
|
+
s danRer4.chrM 950 82 + 16596 GCTAGCGTAGCTTAA--AA-TAAAGCACGGCACTGAAGCTGCCAAGATGGGCCCTAAT--AAGCTCCGCATGC-ACAAAGGCATGGTC
|
|
33
|
+
i danRer4.chrM N 0 C 0
|
|
34
|
+
|
|
35
|
+
a score=1709796.000000
|
|
36
|
+
s mm8.chrM 81 379 + 16299 CTGGCCTTATAATTAATTAGAGGTAAAATTACACATGCAAACCTCCATAGACCGGTGTAA-AATCCCTTAAACATTT-ACTTA--------AAATTTAAGGAGAGGGTATCAAGCACAT--------TAA--AATAGCTTAAGACACCTTGCCT-AGCCACACCCCCACGGG-ACTCAGCAGTGATAAATATTAAGCAATAAACG---AAAGTTTGACTAAGTTA-TACCT---C-TTAGGGTT-GGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAAT-TATCTT-CGGCGTAAAACGTGTCAACT----ATAAATAAATA-----AATAGAATTAAAATCCAACTTA-TATGT-GAAAATTCATTGTTAGGACCT-AAACTCAATAACGAAAGTAATTCT----AGTCA---------TT
|
|
37
|
+
s oryCun1.scaffold_140182 195 382 + 20791 CTGGCCTTTTTATTGTTTTGTAGCAACCTTACACATGCAAGACTCCTCACGCCAGTG-AG-AATGCCCTTAACATCA-AACTA--------GATCAAGAGGAGCGGACATTAAGCACAC--------TAATCAGTAGCTCAAGATGCCTTGCTT-AACCACACCCCCAAGGG-ATACAGCAGTGATAAATATTTAGCAATGAACG---TAAGTTTGACTAAGTTA-TGCTA---CTTTAGGGTT-GGTAAATCTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAATTAATAAATATC-CGGCGTAAAGCGTGATTAGA----ATAAACAACAA-----AATAAAATCAAATAACAACTAA-GCTGT-AAAAAGTAATAGTTGCAAACA-AAAATAAACAACGAAAGTGATTTT----ATACT---------CT
|
|
38
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
39
|
+
s rn4.chrM 80 379 + 16300 CTGGCCTTATAATTAATTGGAGGTAAGATTACACATGCAAACATCCATAAACCGGTGTAA-AATCCCTTAAAGATTT-GCCTA--------AAACTTAAGGAGAGGGCATCAAGCACAT---------AA--TATAGCTCAAGACGCCTTGCCT-AGCCACACCCCCACGGG-ACTCAGCAGTGATAAATATTAAGCAATGAACG---AAAGTTTGACTAAGCTAGTACCT---C-TCAGGGTT-GGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAAT-TATTTT-CGGCGTAAAACGTGCCAACT----ATAAATCTCAT-----AATAGAATTAAAATCCAACTTA-TATGT-GAAAATTCATTGTTAGGACCT-AAGCCCAATAACGAAAGTAATTCT----AATCA---------TT
|
|
40
|
+
i rn4.chrM C 0 C 0
|
|
41
|
+
s hg18.chrM 662 382 + 16571 CTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTG-AG-TTCACCCTCTAAATC--ACCAC--------GATCAAAAGGGACAAGCATCAAGCACGCAG------CAA--TGCAGCTCAAAACGCTTAGCCT-AGCCACACCCCCACGGG-AAACAGCAGTGATTAACCTTTAGCAATAAACG---AAAGTTTAACTAAGCTA-TACTAAC-C-CCAGGGTT-GGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAAT-AGAAGC-CGGCGTAAAGAGTGTTTTAG----ATCACCCCCTC--CCCAATAAAGCTAAAACTCACCTGA-GTTGT-AAAAAACTCCAGTT--GACAC-AAAATAGACTACGAAAGTGGCTTT----AACAT---------AT
|
|
42
|
+
i hg18.chrM C 0 C 0
|
|
43
|
+
s panTro2.chrM 84 376 + 16554 CTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGCCCC-GTG-AG--TCACCCTCTAAATC--GCCAT--------GATCAAAAGGAACAAGTATCAAGCACGCAG------CAA--TGCAGCTCAAAACGCTTAGCCT-AGCCACACCCCCACGGG-AGACAGCAGTGATAAACCTTTAGCAATAAACG---AAAGTTTAACTAAGCCA-TACTAAC-C-TCAGGGTT-GGTCAATTTCGTGCTAGCCACCGCGGTCATACGATTAACCCAAGTCAAT-AGAAAC-CGGCGTAAAGAGTGTTTTAG----ATCACCCCCCC------ATAAAGCTAAAATTCACCTGA-GTTGT-AAAAAACTCCAGCT--GATAC-AAAATAAACTACGAAAGTGGCTTT----AACAC---------AT
|
|
44
|
+
i panTro2.chrM C 0 C 0
|
|
45
|
+
s rheMac2.chr5 34435460 378 - 182086969 ctgGCCTTTTCCTTAGCTCTTAGTAGGATTACACATGCAAGCATCCCCACCCCAGTG-AAAAATGCCCTCTAGATC--ACCG---------GATCAAAAGGAGCAGGTATCAAGCATGCAT------GAA--TGCACCTCAAAACACTTTGCTC-AACCACACCCCCACGGG-AAACAGCAGTGATAAATCCTTAGTAATAAATG---GAAGTTTGACCAAGCCA-TACTAATAT-TTAGGGTT-GGTTAATTTCGTGCCAGTCA-CGTGGCCATAAGATTAACCCAAGCTAAT-AGAACT-TGGCGTAAAGAATGTTTAAG----GTCTACCCTCA------ATAAAGCTAAACTCCATTTAA-GCTGTAAAAAAACTCCAGCT--GAAAT-AAAATATACTACAAAAGTGGCTTT----AATAT----------C
|
|
46
|
+
i rheMac2.chr5 N 0 C 0
|
|
47
|
+
s bosTau2.chrM 443 376 + 16338 CCAGCCTTCCTGTTAACTCTTAATAAACTTACACATGCAAGCATCTACACCCCAGTG-AG-AATGCCCTCTAGGTT--ATTAA--------AACTAAGAGGAGCTGGCATCAAGCACACAC------CC---TGTAGCTCACGACGCCTTGCTT-AACCACA-CCCCACGGG-AAACAGCAGTGACAAAAATTAAGCCATAAACG---AAAGTTTGACTAAGTTA-TATTA---A-TTAGGGTT-GGTAAATCTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAGCTAAC-AGGAGTACGGCGTAAAACGTGTTAAAG----CACCATACCAA------ATAGGGTTAAATTCTAACTAA-GCTGT-AAAAAGCCATGATT--AAAATAAAAATAAATGACGAAAGTGACCCT----ACAAT---------AG
|
|
48
|
+
i bosTau2.chrM C 0 C 0
|
|
49
|
+
s canFam2.chrM 82 378 + 16727 CTAGCCTTCCTATTAGTTTTTAGTAGACTTACACATGCAAGCCTCCACGCCCCAGTG-AG-AATGCCCTTAAAATC--ACCAG-------TGATCTAAAGGAGCAGGTATCAAGCACACTC------TTA--AGTAGCTCATAACACCTTGCTA-AGCCACACCCCCACGGG-ATACAGCAGTGATAAAAATTAAGCCATAAACG---AAAGTTTGACTAAGCCA-TACTA---A-ATAGGGTT-GGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAACTAAT-AGGCCTACGGCGTAAAGCGTGTTCAAG----ATACTTTTACA------CTAAAGTTAAAACTTAACTAA-GCCGT-AAAAAGCTACAGTT--ATCAT-AAAATAAACCACGAAAGTGACTTT----ATAAT---------AA
|
|
50
|
+
i canFam2.chrM C 0 I 1
|
|
51
|
+
s dasNov1.scaffold_23239 3884 386 - 16977 CTAGCCTTACTATTAATTCATAACAAAATTACACATGCAAGTATCAGCACACCAGTG-AG-AATGCCCTCTAACTC--TTATA--------GATCAAAAGGAGCAAGCATCAAGTACACACAGCCCTTAC--AGTAGCTCATAACGCTTTGCTC-AACCACACCCCCACGGG-ATACAGCAGTGATAAAAATTAAGCAATAAGCG---AAAGCTTGACTAAGTTA-TGTTATT-A-TAAGGGTT-GGTAAATTTCGTGCCAGCAACCGCGGTCATACGATTAACCCAAATTAAT-AGTTAT-CGGCGTAAAGCGTGTTTAAG----ACACCTAGACA------ATAGAGTTAAACCCTTACTAC-GCTGT-AAAAAGCCTTAGTAGGACCAT-AAACCCTTCAACGAAAGTGACTCT----AATTT---------AT
|
|
52
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
53
|
+
s loxAfr1.scaffold_36650 3090 383 + 16266 CCGGCCTTCTTATTGGTTACTAGGAAACTTATACATGCAAGTATCCGCCCGCCAGTG-AA-TACGCCTTCTAAATC--ATCAC-------CGATCAAAGAGAGCTGGCATCAAGCACACAC---TCTAAG--TGTAGCTCATGACGTCTCGCCT-AGCCACACCCCCACGGG-AAACAGCAGTAGTAAATATTTAGCAATTAACA---AAAGTTAGACTAAGTTA-TCCTAA--T-AAAGGACT-GGTCAATTTCGTGCCAGCAACCGCGGCCATACGATTAGTCCAAATTAAT-AAGCATACGGCGTAAAGCGTATCAGAA----GAATTAAGAAA------ATAAAGTTAAATCTTATACTA-GCTGT-TTAAAGCTCAAGATAAGACAT-A-AATAACCTACGAAAGTGACTTT----AATAA---------TC
|
|
54
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
55
|
+
s echTel1.scaffold_49882 338 378 - 7170 CTAGCCTTTTTATTAGTTCTTAATAAAATTATACATGCAAGTATCCACCCCCCAGTG-AA-AATGCCCTTAAACTT--ACTTA-------TAATTAAGAGGAGCAGGTATCAAGCACA-------CTTAA--TGTAGCTCACAACACCTTGCTA-AGCCACACCCTCACGGG-ACACAGCAGTAATAAAAATTAAGCAATTAACG---GAAGTTTGACTTAGTTA-TATTAT--T-TAATTAGTCGGTCAACTTCGTGCCAGCCACCGCGGTCATACGAAGGACTTGAACTAAT-AAATAC-CGGCGTAAAGCGTGATTAAG----ATCTTTAAACA------ATAAAACAAAAAC-TATTCTATGCCGT-AAAAAGCC--AGAGAATACTT-ATAATAAATAACGAAGGTAATTTT----ATAAT---------TT
|
|
56
|
+
i echTel1.scaffold_49882 C 0 C 0
|
|
57
|
+
s monDom4.chrUn 117151502 391 + 174229318 CTAGCCTTCTTGTTAATTTTAATTAGACCTACACATGCAAGTTTCCGCTGCCCTGTG-AG-AATGCCCTCAAAACT--ACTCAATTCTCCAAGATAAGAGGAGCTGGTATCAGGCACACAC------TACT-AGTAGCCAACTACACCTTGCTC-AACCACACCCCCACGGG-AAACAGCAGTGATTAAAATTAAGCTATAAACG---AAAGTTTGACTAAATCA-TAGTTAT-C-TAAGGGTT-GGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAATTAAC-AAGCCTCCGGCGTAAAGCGTGTCCAAA----CAAAAGACTAA----TAATAAAGTTAATACTTAACTAA-GTTGT-AACACACTCCAGTTA-ATACT-AAGATAAACTATTAAAATAACTTT----AATAA---------AG
|
|
58
|
+
i monDom4.chrUn C 0 C 0
|
|
59
|
+
s galGal2.chrM 1309 395 + 16775 CTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTG-AA-AATGCCCCCAAACCT--TTCTT-----CCCAAGCAAAAGGAGCAGGTATCAGGCACACTC------AGC--AGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTG---TAAACTTGACTTAGCCA-TAGCAA--C-CCAGGGTT-GGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAAT-AGCTACCCGGCGTAAAGAGTGGCCACATGTTATCTGCACCAG------CTAAGATTAAAATGCAACCAA-GCTGT-CATAAGCCTAAGATC-CACCT-AAACCCAAC--CCAAATCCATCTT----AGCCTCAACGATTAAT
|
|
60
|
+
i galGal2.chrM C 0 C 0
|
|
61
|
+
s xenTro2.scaffold_18005 958 384 + 3405 CCAGCCTTGTCATCAACTTTATCTGAACTTACACATGCAAGCATCCGCATTCCCGTG-AA-AATGCCCTTAAGCCC--CTAAA-----ACAGAGGATAAGGAGCCGGTATCAGGCACGACC-----------ATCAGCCCACGACACCTTGCTA-TGCCACACCCACAAGGGAACTCAGCAGTGATAAACATTGAAC-ATGAGCGATTAAAGCTCGACTCAGTTA-CAGAT---A-ACAGAGTT-GGTCAATCTCGTGCCAGCCGCCGCGGTTATACGAGAAACTCAAGTTGAT-AATTCA-CGGCGTAAAGCGTGATTAAG----GTTCACCCTCA------CTAGAGTCAAACCCTAGCTAA-GCTGT-CGCACGCTTTCGCTA-GACTG-AAGAACACTAACGAAAGTAACTCTACCCAACAT---------AC
|
|
62
|
+
i xenTro2.scaffold_18005 N 0 C 0
|
|
63
|
+
s tetNig1.chrUn_random 103509833 382 + 171761319 CTGACTTTACTAACAGCTCTAGCCAAACTTACACATGCAAGTATCCGCACCCCCGTG-AG-AATGCCCTACACACCC-TGCCC--------GGGAATTAGGAGCCGGTATCAGGCACAC-C------CCT--CGTAGCCCATGACGCCTTGCTT-AGCCACACCCCCAAGGGAACTCAGCAGTGATAAACATTAAGCCATAAGTG---AAAACTTGACTTAGCTA-CGGCT---T-AGAGGGCC-GGTAAAACTCGTGCCAGCCACCGCGGTTATACGAGAGACCCAAGTTGTT-AGCCCC-CGGCGTAAAGAGTGGTTAAA----ACACCAAACAC--CAAACTGAGGCCGAACGCCCTCAAG-GCAGT-TATACGCTCCCGAGG-ACATG-AAGGACAATTACGAAGGTAGCCTC----ACCCC---------CT
|
|
64
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
65
|
+
s fr1.chrUn 320907171 383 + 349519338 CTGACTTTACTAACAACTCTGATCAAACTTACACATGCAAGTATCCGCATCCCAGTG-AA-AATGCCCCCCGCCCCC-CGTCC--------GGAAATAGGGAGTTGGTATCAGGCACACAA------ATT--TGTAGCCCATGACACCTAGCTT-TGCCACGCCCCCAAGGGAATTCAGCAGTGATAAACATTAAGCCATAAGTG---AAAACTTGACTTAGTCA-TGATC---T-AAAGAGTC-GGTAAAACTCGTGCCAGCCACCGCGGTTATACGAGAGACCCAAGTTGTT-AGCCAA-CGGCGTAAAGGGTGGTTAGA----ACTAAAAACAA--CAAACTGAGACCGAACACCTTCAAG-GCTGT-TATACGCTTCCGAAG-CAACG-AAGAACAATAACGAAAGTAGCCTC----ACTAA---------CT
|
|
66
|
+
i fr1.chrUn C 0 N 0
|
|
67
|
+
s danRer4.chrM 1032 378 + 16596 CCGACCTTTTGATCAGCTTTTACCTAATTTACACATGCAAGTCTCCGCACCCCTGTG-AA-TACGCCCTCAATCCCCAAACCT--------GGGGACGAGGAGCAGGTATCAGGCACAA-A------ATT--TTTAGCCCAAGACGCCTAGCCA-AGCCACACCCCCAAGGGGATCCAGCAGTGACAAACATTAAGCTATAAGTG---AAAACTTGACTCAGTTA-AGGTA---A-AGAGAGCC-GGTAAAACTCGTGCCAGCAACCGCGGTTAAACGAGAGGCTCTAGTTGAT-ATACTA-CGGCGTAAAGGGTGGTTAAG---------GAACAATGTAAAATAAAGCCAAACGGCCCTTTA-ACTGT-TATACGCTTTTAGAT-GCTAG-AGGCCCAAACACGAAAGTAGCTTT----A--AA---------TT
|
|
68
|
+
i danRer4.chrM C 0 I 6
|
|
69
|
+
|
|
70
|
+
a score=1731261.000000
|
|
71
|
+
s mm8.chrM 460 260 + 16299 TATA--ATACACGACAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCATAAACCTAAATAATTAAATTTAACA-AAAC-TATTTGCCAGAGAACTACTAG--CCATAGCTTAAAACTCAAAGGACT---TGGCGGTACTTTATATCCATCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGCTCTACCTCACCATCTCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAACCCTAA--AAAGGTATTAAAGT
|
|
72
|
+
s oryCun1.scaffold_140182 577 256 + 20791 TCGA--ACTCACGATAGCTAAGGCCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACTTTGATAATTTCA--TAACA-AAAT-TATTCGCCAGAGAACTACAAG--CCAAAGCTTAAAACTCAAAGGACT---TGGCGGTGCTTTATACCCACCTAGAGGAGCCTGTTCCGTAATCGATAAACCCCGATAAACCTTACCACTCTTTGCCAACTCAGCCTATATACCGCCATCTTCAGCGA--CCTAA--AAAGGAGAAAAAGT
|
|
73
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
74
|
+
s rn4.chrM 459 261 + 16300 TATATAATGCACGATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTTAATAATTAAACCTA-CA-AAAT-TATTTGCCAGAGAACTACTAG--CTACAGCTTAAAACTCAAAGGACT---TGGCGGTACTTTATATCCATCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGTTCTACCTTACCCCTTCTCGCTAATTCAGCCTATATACCGCCATCTTCAGCAAACCCTAA--AAAGGCACTAAAGT
|
|
75
|
+
i rn4.chrM C 0 C 0
|
|
76
|
+
s hg18.chrM 1044 256 + 16571 CTGA--ACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAA-TCAACA-AAAC-TGCTCGCCAGAACACTACGAG--CCACAGCTTAAAACTCAAAGGACC---TGGCGGTGCTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGC----TCAGCCTATATACCGCCATCTTCAGCAAACCCTGA-TGAAGGCTACAAAGT
|
|
77
|
+
i hg18.chrM C 0 C 0
|
|
78
|
+
s panTro2.chrM 460 256 + 16554 CTGA--ATACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACTTCAACAGTTAAA-TTAACA-AAAC-TGCTCGCCAGAACACTACGAG--CCACAGCTTAAAACTCAAAGGACC---TGGCGGTGCTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCGCCTCTTGC----TCAGCCTATATACCGCCATCTTCAGCAAACCCTGA-TGAAGGTTACAAAGT
|
|
79
|
+
i panTro2.chrM C 0 C 0
|
|
80
|
+
s rheMac2.chr5 34435838 239 - 182086969 CTGA--AGACACAATAGCTAAGATCGAAACTTGGATTAGATACCCCACTATGCTCAGCTCTAAACTCTAATAGTTAGA-TTAACA-AAAC-CACTCGCCAGAGTACTACAAG--AAACAGCTGAAAACTCAAAGGACT---TGGTGGTGCTTTATATCCCCCTAGAGGAGCCTGTTCTAT-ATTGATAAACCCTGATGCACCTCAGTACCTCTTGCCA--CCAGCCTATATACCGCCATCTTCAGCAAACCC-------------------
|
|
81
|
+
i rheMac2.chr5 C 0 I 233
|
|
82
|
+
s bosTau2.chrM 819 258 + 16338 CCGA--C-GCACTATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACACAGATAATTACA-TAAACA-AAAT-TATTCGCCAGAGTACTACTAG--CAACAGCTTAAAACTCAAAGGACT---TGGCGGTGCTTTATATCCTTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATAAACCTCACCAATTCTTGCTAATACAGTCTATATACCGCCATCTTCAGCAAACCCTAA--AAAGGAAAAAAAGT
|
|
83
|
+
i bosTau2.chrM C 0 C 0
|
|
84
|
+
s canFam2.chrM 461 258 + 16727 CTGA--CTACACGATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACATAGATAATTTTA-C-AACA-AAAT-AATTCGCCAGAGGACTACTAG--CAATAGCTTAAAACTCAAAGGACT---TGGCGGTGCTTTATATCCCTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATAAACCTCACCACCTTTCGCTAATTCAGTCTATATACCGCCATCTTCAGCAAACCCTCA--AAAGGTAGAACAGT
|
|
85
|
+
i canFam2.chrM I 1 C 0
|
|
86
|
+
s dasNov1.scaffold_23239 4270 258 - 16977 CTGA--CTACACGATAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAACTAAAACAGTT-CA-CAAACA-AAAC-TGTTCGCCAGAGTACTACTAG--CAACAGCTTAAAACTCAAAGGACT---TGGCGGTGCTTTACATCCTTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATATACCTCACCACCCCTTGCTAATACAGCCTATATACCGCCATCTTCAGCAGACCCTAG--TAAGGCACCACAGT
|
|
87
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
88
|
+
s loxAfr1.scaffold_36650 3473 259 + 16266 CTAA--ACATACGATAGCTAGGGTACAAACTGAGATTAGATACCTCACTATGCCTAGCCCTAAACTTTGATAGCTACC-TTTACA-AAGC-TATCCGCCAGAGAACTACTAG--CCAGAGCTTAAAACTTAAAGGACT---TGGCGGTGCTTTATATCCACCTAGGGGAGCCTGTCTCGTAACCGATGAACCCCGATATACCTTACCGTCACTTGCTAATTCAGTCCATATACCACCATCTTCAGCAAACCCCTA--TAGGGCACAAAAGT
|
|
89
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
90
|
+
s echTel1.scaffold_49882 716 260 - 7170 CTGA--ACCCACGATAGCTAAGAAACAAACTGGGATTAGATACCCCACTATGCTTAGCCTTAAACCTAGATAGT--CT-ATAACA-AGACATATCCGCCAGAGAACTACTAG---CAAAGCTAAAAACTTAAAGAACTCTGTGGCGGTGCTTCACACCCACCTAGAGGAGCCTGTTATGTAATTGATACACCCCACTAAACCCTACCACCACTTGCTAAGTCAGTCTATATACCGCCATCCTCAGCAAAACCCCA--AAAGGCATATCAGT
|
|
91
|
+
i echTel1.scaffold_49882 C 0 C 0
|
|
92
|
+
s monDom4.chrUn 117151893 257 + 174229318 CTGA---TACACGAAAACTAAGGTACAAACTGGGATTAGATACCCCACTATGCTTAGTCATAAACCAAAGTAGTTAGA--TAACA-AAAC-TACTCGCCAGAGAACTACTAG--CTACTGCTTAAAACTCAAAGGACT---TGGCGGTGCCCTAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATATACCCAACCCCATCTTGCCAATACAGCCTATATACCGCCATCGTCAGCCCACCTTAA--AAAAGATACAAAGT
|
|
93
|
+
i monDom4.chrUn C 0 C 0
|
|
94
|
+
s galGal2.chrM 1704 263 + 16775 TTTA--ACCCACGAAAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAATCTAGATACCTCCC-ATCACA-CATG-TATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACT---TGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAATCCACGATTCACCCAACCACCCCTTGCCAGCACAGCCTACATACCGCCGTCGCCAGCCCACCTCTAATGAAAGAACAACAGT
|
|
95
|
+
i galGal2.chrM C 0 C 0
|
|
96
|
+
s xenTro2.scaffold_18005 1342 254 + 3405 CTGA--ACTCACGACCGCTAGGAAACAAACTGGGATTAGATACCCCACTATGCCTAGCCTTAAACCTTGAC-----CA-ATTACA-CTTC-AATCCGCCAGGGAACTACGAG--CCCAAGCTTAAAACCCAAAGGACT---TGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATACCCCCCGCTTAACCTCACCACTTCTTGCCAAACCCGCCTATATACCACCGTCGCCAGCCCACCCCGT--GAGGGGACACAAGT
|
|
97
|
+
i xenTro2.scaffold_18005 C 0 C 0
|
|
98
|
+
s tetNig1.chrUn_random 103510215 258 + 171761319 TTGA--ACCCACGAAAGCTAGGGTACAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAACAATGATATTCTAA---TACATTCCT-TATCCGCCCGGGTACTACGAG--CATTAGCTTAAAACCCAAAGGACT---TGGCGGTGCTTTAAACCCATCTAGAGGAGCCTGTTCTAGAACCGATAATCCCCGTTAAACCTCACCCCTTCTTGTCTAATCCGCCTATATACCACCGTCGTCAGCCTACCCTGT--GAAGGACTAACAGT
|
|
99
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
100
|
+
s danRer4.chrM 1416 257 + 16596 CTGA--ACCCACGAAAGCTAAGAAACAAACTGGGATTAGATACCCCACTATGCTTAGCCATAAACAAAGACATTTAAT---CACA-ACAA-TGTTCGCCCGGACACTACAAG--CATAAGCTTAAAACCCAAAGGACC---TGACGGTGCCTTAGATCCCCCTAGAGGAGCCTGTTCTAGAACCGATTATCCCCGTTAAACCTCACCATTTCTAGCAAAATCAGCCTATATACCACCGTCGCCAGCTTACCCTGT--GAAGGAATAACAGT
|
|
101
|
+
i danRer4.chrM I 6 C 0
|
|
102
|
+
|
|
103
|
+
a score=-15759.000000
|
|
104
|
+
s mm8.chrM 720 22 + 16299 AAGCAAAAGAAT---------------------------------CAAACAT-------------------------------------------------------------AAA
|
|
105
|
+
s oryCun1.scaffold_140182 833 20 + 20791 AAGCTCAATTA----------------------------------CTACCGT--------------------------------------------------------------AA
|
|
106
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
107
|
+
s rn4.chrM 720 21 + 16300 AAGCACAAGAA----------------------------------CAAACAT-------------------------------------------------------------AAA
|
|
108
|
+
i rn4.chrM C 0 C 0
|
|
109
|
+
s hg18.chrM 1300 21 + 16571 AAGCGCAAGTA----------------------------------CCCACGT-------------------------------------------------------------AAA
|
|
110
|
+
i hg18.chrM C 0 C 0
|
|
111
|
+
s panTro2.chrM 716 21 + 16554 AAGCACAAGTA----------------------------------CCCACGT-------------------------------------------------------------AAA
|
|
112
|
+
i panTro2.chrM C 0 C 0
|
|
113
|
+
s rheMac2.chr5 34436310 116 - 182086969 aagcaggagaatggcgtgaacccgggaggtggagcttgcagtgagcccagatcaggccactgtagtccagcctgggcaacagagtgagactctgtctcaaaaaacaaaaaacaaaa
|
|
114
|
+
i rheMac2.chr5 I 233 C 0
|
|
115
|
+
s bosTau2.chrM 1077 22 + 16338 AAGCGTAATTAT---------------------------------GATACAT-------------------------------------------------------------AAA
|
|
116
|
+
i bosTau2.chrM C 0 C 0
|
|
117
|
+
s canFam2.chrM 719 22 + 16727 AAGCACAATCAT---------------------------------TTTACAT-------------------------------------------------------------AAA
|
|
118
|
+
i canFam2.chrM C 0 C 0
|
|
119
|
+
s dasNov1.scaffold_23239 4528 21 - 16977 GAGCACAATAA----------------------------------CATACAT-------------------------------------------------------------AAA
|
|
120
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
121
|
+
s loxAfr1.scaffold_36650 3732 22 + 16266 GAGCTTAATCAT---------------------------------AACCCAT-------------------------------------------------------------GAA
|
|
122
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
123
|
+
s echTel1.scaffold_49882 976 22 - 7170 AAGCATAATGAT---------------------------------AAGACAT-------------------------------------------------------------AAA
|
|
124
|
+
i echTel1.scaffold_49882 C 0 I 1561
|
|
125
|
+
s monDom4.chrUn 117152150 23 + 174229318 AAGCAAAATTATT--------------------------------TTTTCAT-------------------------------------------------------------AAA
|
|
126
|
+
i monDom4.chrUn C 0 C 0
|
|
127
|
+
s galGal2.chrM 1967 22 + 16775 GAGCTCAATAGC---------------------------------CCCTCGC-------------------------------------------------------------TAA
|
|
128
|
+
i galGal2.chrM C 0 C 0
|
|
129
|
+
s xenTro2.scaffold_18005 1596 22 + 3405 AGGCTCAATGAT---------------------------------CAAACAT-------------------------------------------------------------CAA
|
|
130
|
+
i xenTro2.scaffold_18005 C 0 C 0
|
|
131
|
+
s tetNig1.chrUn_random 103510473 22 + 171761319 AGGCAAAGTTGG---------------------------------CACAGCC-------------------------------------------------------------CAA
|
|
132
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
133
|
+
s danRer4.chrM 1673 22 + 16596 AAGCAAGATGGG---------------------------------CATAGCC-------------------------------------------------------------CAG
|
|
134
|
+
i danRer4.chrM C 0 C 0
|
|
135
|
+
|
|
136
|
+
a score=558754.000000
|
|
137
|
+
s mm8.chrM 742 124 + 16299 AACGTTAGGTCAAGGTGTAGCCAATGAAATGGGAAGAAATGGGCTACATTTTCT---TA-TA--AAAGAACATT-----ACTATACCCTTT--ATGAAA----CTAAAG--GACTAAGGAGGATTTAGTAGTAAATTAAGAAT-
|
|
138
|
+
s oryCun1.scaffold_140182 853 123 + 20791 AACGTTAGGTCAAGGTGTAGCTCATAGAGTGAGA--GCATGGGCTACATTTTCT---AC-TT---CAGAATATA-----CGAATTGCCCTT--ATGAAAC--TCTAAGG--GCCAAAGGAGGATTTAGTAGTAAATTAAGAAT-
|
|
139
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
140
|
+
s rn4.chrM 741 125 + 16300 AACGTTAGGTCAAGGTGTAGCCAATGAAGCGGAAAGAAATGGGCTACATTTTCT---TT-TCCCAGAGAACATT-----ACGA-AACCTTT--ATGAAA----CTAAAG--GACAAAGGAGGATTTAGTAGTAAATTAAGAAT-
|
|
141
|
+
i rn4.chrM C 0 C 0
|
|
142
|
+
s hg18.chrM 1321 124 + 16571 GACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCT---AC-CC---CAGAAAACT-----ACGATAGCCCTT--ATGAAAC---TTAAGG--GTCGAAGGTGGATTTAGCAGTAAACTGAGAGT-
|
|
143
|
+
i hg18.chrM C 0 C 0
|
|
144
|
+
s panTro2.chrM 737 124 + 16554 GACGTTAGGTCAAGGTGTAGCCTATGAGGTGGCAAGAAATGGGCTACATTTTCT---AC-CC---CAGAAAATT-----ACGATAACCCTT--ATGAAAC---CTAAGG--GTCAAAGGTGGATTTAGCAGTAAACTAAGAGT-
|
|
145
|
+
i panTro2.chrM C 0 C 0
|
|
146
|
+
s rheMac2.chr5 34436426 127 - 182086969 aaTGTTAGGTCAAGGTGTAGCCCATGAAGTGGCATGAAATGGGCTACATTTTCT---ATGTC---CAGAAAATT--T-CACAACAACCTTT--ATGAAAT---CTAAGA--GCTCAAGGAGGATTTAGCAGTAAACCAAGAGC-
|
|
147
|
+
i rheMac2.chr5 C 0 C 0
|
|
148
|
+
s bosTau2.chrM 1099 128 + 16338 AACGTTAGGTCAAGGTGTAACCTATGAAATGGGAAGAAATGGGCTACATTCTCT---ACACC---AAGAGAATCAAG-CACGAAAGTTATT--ATGAAA----CCAATA--ACCAAAGGAGGATTTAGCAGTAAACTAAGAAT-
|
|
149
|
+
i bosTau2.chrM C 0 C 0
|
|
150
|
+
s canFam2.chrM 741 125 + 16727 AAAGTTAGGTCAAGGTGTAACTTATGAGGTGGGAAGAAATGGGCTACATTTTCT---AC-CC---AAGAACATT--T-CACGAATGTTTTT--ATGAAA----TTAAAA--ACTGAAGGAGGATTTAGTAGTAAATTAAGAAT-
|
|
151
|
+
i canFam2.chrM C 0 C 0
|
|
152
|
+
s dasNov1.scaffold_23239 4549 126 - 16977 GACGTTAGGTCAAGGTGTAGCTTATGGGGTGGGAAGAAATGGGCTACATTTTCT---AA-TA---AAGAGCAAA----TACAAAAAACTTA--ATGAAACAATTTAAGA----CTAAGGTGGATTTAGTAGTAAGCTAAAAAT-
|
|
153
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
154
|
+
s loxAfr1.scaffold_36650 3754 126 + 16266 AAAGTTAGGCCGAGGTGTCGCCTACGTGACGGTCAAAGATGGGCTACATTTTCT---AT-TA---TAGAACAGA--CAAACGGATATCACT--CTGAAA----TGGGTG--GTTGAAGGCGGATTTAGTAGTAAACTAAGAAT-
|
|
155
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
156
|
+
s echTel1.scaffold_181343 2 129 + 18297 AACGTTAGGTCAAGGTGTAACCCATGTGGTGGAACCTAATGGGCTACATTTTCTAGCAT-TA---GAAAACCTT--C-AACGAAAGTACTA--ATGAAA----TTTCAGT-ACTAAAGGAGGATTTAGTAGTAAACTGAGAAT-
|
|
157
|
+
i echTel1.scaffold_181343 n 1561 C 0
|
|
158
|
+
s monDom4.chrUn 117152173 125 + 174229318 AACGTTAGGTCAAGGTGTAGCATATGATAGGGAAAGAAATGGGCTACATTATCT---AG-CT---TAGATTACA------CGAATCACATT--ATGAAAT---CTAATGTGCCTGAAGGAGGATTTAGTAGTAAATTAAGAAT-
|
|
159
|
+
i monDom4.chrUn C 0 C 0
|
|
160
|
+
s galGal2.chrM 1989 122 + 16775 TAAGACAGGTCAAGGTATAGCCTATGGGGTGGGA-GAAATGGGCTACATTTTCT---AA-CA---TAGAACAAA------CGAAAAAGGAT--GTGAAAC---CCGCCC--TTAGAAGGAGGATTTAGCAGTAAAGTGAGATC-
|
|
161
|
+
i galGal2.chrM C 0 C 0
|
|
162
|
+
s xenTro2.scaffold_18005 1618 123 + 3405 TACGTCAGGTCAAGGTGTAGCANATGAAGTGGGAAGAAATGGGCTACATTTTCT---AA-TA--CTAGAAAAAA-----CGAAAGATCTTT--ATGAAAC---C--AGA--TCAGAAGGCGGATTTAGCAGTAAAGAGAGACA-
|
|
163
|
+
i xenTro2.scaffold_18005 C 0 N 0
|
|
164
|
+
s tetNig1.chrUn_random 103510495 123 + 171761319 AACGTCAGGTCGAGGTGTAGCGTATGGAGGGGGAAGAAATGGGCTACATTCTCT---GC-CC---AGAGAACCA------CGAATGACATA--ATGAAA----CACATG--TCTGAAGGAGGATTTAGCAGTAAGTAAAGAAAC
|
|
165
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
166
|
+
s danRer4.chrM 1695 122 + 16596 AAAGTCAGGTCGAGGTGTAGCACATGAAATGGGAAGAAATGGGCTACACTTTCT---AC-CC---CAGAATATA------CGAA-AATGTAACATGAAA----CA-ATA--CTTGAAGGAGGATTTAGCAGTAAA-AGAGAAGC
|
|
167
|
+
i danRer4.chrM C 0 C 0
|
|
168
|
+
|
|
169
|
+
a score=2286094.000000
|
|
170
|
+
s mm8.chrM 866 631 + 16299 AGA------GAGCTTAATTGAATTGAGCAATGAAGTACGCACACACCGCCCGTCACCCTCCT--CAAAT----------TA-AATTAAACTTAACA-TA---AT-TAATTTCTAGACATCCGTTT-ATG-AGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGAAT--A-ATCATAGTGTAGCT-TA-A-TATTAAAGCATCTGGCCTACACCCAGAAGAT---TTCATGACCAA--TGAACACTCTGA-AC--TAATC-----CTAGCCCTA--G-CCC-TA---------CACAAATAT--AA---------TTA-TACT--ATTAT------------ATAAATCAAAACATT-TATCC--TA-----CTAAAAGTATTGGAGAAAGAA-----AT-----TCGTACATCTAGGAGCTATAGAA----CTAGTACCGCAAGGGAAA-GATGAAA-G--ACTAATTAA------------AAGTAAGAACAAG-CAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAG-AAAACTTCTAACTAAAAGAATTACAGCTAGAAACCCCGAAA-CCAAACGAGCTACCTAAAAACAATTT-----T--AT---GAATCAACTCGTCTATGTGGCAAAATAGTGAGAAGATTTTTAGGTAGAGGTGAAAAGCCTAACGAGCTTGGTGATAGCTGGTTACCCA-AAAA-ATGAATTTAAGTTCAATTTTAAA------C-------TTGCTA------------------AAAA------AA-CAA
|
|
171
|
+
s oryCun1.scaffold_140182 976 628 + 20791 AGA------GTGCTTAATTGAACAAGGCCATGAAGCACGCACACACCGCCCGTCACCCTCCT--CAAGT-------------GACAAATATTTACT-TATACCT-AATTACATAAATAGACAAGC-ATA-AGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGACA--C-TTCAGAGCGTAGCT-TA-A--CTTAAAGCACTTGGCTTACACCCAAGAGAT---TTCAT--TTAC--TGACCACTCTGA-GC--CAACA-----CTAGCCCTA--T-GA---A----------ACTAACACTGAA---------CCA-GAGTA-ATTAG------------CTAAACTAAACCATT-CACCC--CAT---ATTAAAAGTATAGGAGATAGAA-----AT-----TTA--TATCCAGGCGCTATAGAG----AAAGTACCGTAAGGGAAA-GATGAAA-G--ATTAGTTAA------------TAGCACAAAAAAG-CAGAGATTACTTCTCTTACCTTTTGCATAATGAATTAGCTAG-AAAATCCTTAGCAAAAAGAATTTTAGTTAAGAACCCCGAAA-CCAGACGAGCTATTTATGAGCAGTTG-----A--AA---GAACGAACCCGTCCATGTGGCAAAATGGTGGGAAGACTTGTAAATAGAGGTGAAAAGCCAACCGAGCCTGGTGATAGCTGGTTGTCCA-GAAT-A-GAATTTTAGTTCAACTTTAAA------T-------TTTCCT------------------AAAG------GA-CAT
|
|
172
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
173
|
+
s rn4.chrM 866 628 + 16300 AGA------GAGCTTAATTGAATAGAGCAATGAAGTACGCACACACCGCCCGTCACCCTCCT--CAAAT----------TA-GATTGACATTCACA-TATACAT-AATTTCACTAACA--AATTT-ATG-AGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGAAT--A-ATCACAGTGTAGCT-TA-A-TCACAAAGCATCTGGCCTACACCCAGAAGAA---TTCATAAAAAA--TGAACACTTTGA-AC--TAACC-----CTAGCCCTA--C-AAC-CA----------ACCAACAT--AA---------CTA-AACC--CCCAC------------ATAAACTAAAACATT-TAACT--CA-------AAAAGTATTGGAGAAAGAA-----AT-----TTACTTACC-AAGAGCTATAGAG----AAAGTACCGCAAGGGAAATGATGAAA-G--ACTAATTTA------------AAGTAAAAACAAGACAAAGATTAAACCT-GTACCTTTTGCATAATGAATTAACTAG-AAAATCCTTAACAAAAAGAATTTAAGCTAAGAACCCCGAAA-CCAAACGAGCTACCTAAAAACAATTT-----C--AT---GAATCAACCCGTCTATGTAGCAAAATAGTGGGAAGATTTTTAGGTAGAGGTGAAAAGCCTATCGAGCTTGGTGATAGCTGGTTGCCCA-AAAA-A-GAATTTCAGTTCAAACTTTAA------G-------CTTCCA------------------TCAG------AA-CAA
|
|
174
|
+
i rn4.chrM C 0 C 0
|
|
175
|
+
s hg18.chrM 1445 625 + 16571 AGA------GTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCT--CAAGTA---------TA-CTTCAAAGGACATT-TA---AC-TAAAACCCCTACG--CATTT-ATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACG--A-ACCAGAGTGTAGCT-TA-A--CACAAAGCACCCAACTTACACTTAGGAGAT---TTCAACTTAAC-TTGACCGCTCTGA-GC--TAAAC-----CTAGCCCCA--A-ACC-CA----------CTCCACCT--TA---------CTA-CCAG--ACAAC------------CTTAGCCAAACCATT-TACCC--AA------ATAAAGTATAGGCGATAGAA-----AT-----TGA--AACC-TGGCGCAATAGAT----ATAGTACCGCAAGGGAAA-GATGAAA-A--ATTATAACC------------AAGCATAATATAG-CAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAG-AAATAACTTTGCAAGGAGAGCCAAAGCTAAGACCCCCGAAA-CCAGACGAGCTACCTAAGAACAGCTA-----A--AA---GAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCA-AGAT-A-GAATCTTAGTTCAACTTTAAA------T-------TTGCCC------------------ACAG------AA-CCC
|
|
176
|
+
i hg18.chrM C 0 I 2
|
|
177
|
+
s panTro2.chrM 861 626 + 16554 AGA------GTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCT--CAAGTA---------TA-CTTCAAAGGATACT-TA---ACTTAAACCCCCTACG--TATTT-ATATAGAGGAGATAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACG--A-ACCAGAGTGTAGCT-TA-A--CATAAAGCACCCAACTTACACTTAGGAGAT---TTCAACTCAAC-TTGACCACTCTGA-GC--CAAAC-----CTAGCCCCA--A-ACC-CC----------CTCCACCC--TA---------CTA-CCAA--ACAAC------------CTTAACCAAACCATT-TACCC--AA------ATAAAGTATAGGCGATAGAA-----AT-----TGT--AAAC-CGGCGCAATAGAC----ATAGTACCGCAAGGGAAA-GATGAAA-A--ATTATACCC------------AAGCATAATACAG-CAAGGACTAACCCCTGTACCTTTTGCATAATGAATTAACTAG-AAATAACTTTGCAAAGAGAACCAAAGCTAAGACCCCCGAAA-CCAGACGAGCTACCTAAGAACAGCTA-----A--AA---GAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCA-AGAT-A-GAATCTTAGTTCAACTTTAAA------T-------TTACCT------------------ACAG------AA-CCC
|
|
178
|
+
i panTro2.chrM C 0 I 2
|
|
179
|
+
s rheMac2.chr5 34436553 630 - 182086969 AGA------GTGCTTGGTTGAATAAGACCATGAAGCATGCACACACCACCCGTCACCCTCCT--CAAATA--------TTA-CTGTAGAAATCACTATT---AC-TAATAGTTTTATA--TGCAC-ATATAGAAGAGATAAGTTGTAACATGTTAGGCATACTGGCAAGTGTGCTTGGACA--A-ACCAAAGTGTAGCT-TA-A--ACCAAAGCATCTGGCTTACACCTGGAAAAT---TTCACTGTGAA-CTGATCACTTTGA-GC--TAACT-----CTAGTACCA--A-ACCTCG----------CTAAAAAA--TA---------TTA-TTAA--ACTAT------------CTTAATCAGGTGATT-TACTTTAGA------AAAAAGTATAGGTGATAGAA-----AT-----TTT--TACCATGGCGCAATAGAC----ATAGTACCATAAGGGAAA-GATGAAAGA--ACTATA-TC------------AAGCACTAAAAAG-CAAAGACAAGCCCTCATACTTTCTGCATAATGTATTAACTAG-AAAT-ACTTTACACAGAGAACTATAGCCAAGTCCCCCAAAA-ACAGACGAGCTACCCAAGAATAACTG-----A--AA---GAGCACACTCATCTATGTGGCAAAGTAGTGGGAAGATTCAGCAGCAGCGGTGACAAGCCTACCAAGCCTGGTGATAGCTGGTTATCCA-AGAT-A-GAATCTTAATTCAACTTTAAA------C-------TTAGCC------------------ACAG------AA-TTA
|
|
180
|
+
i rheMac2.chr5 C 0 I 1
|
|
181
|
+
s bosTau2.chrM 1227 638 + 16338 AGA------GTGCTTAGTTGAATTAGGCCATGAAGCACGCACACACCGCCCGTCACCCTCCT--CAAATAG--ATTCAGTG-CATCTAACCCTATT-TA---AA-CGCACTAGCTACA--TG--------AGAGGAGACAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGATA--A-ATCAAGATATAGCT-TA-A---ACAAAGCATCCAGTTTACACCTAGAAGAC---TTCATTCATTA--TGAATATCTTGA-AC--TAGAC-----CTAGCCCAAAGA-TAC-CC----------TCTCGACT--AA---------ACA-ACCAAGATAGA------------ATAAAACAAAACATT-TAATC--CCA---ATTTAAAGTATAGGAGATAGAA-----AT-----CTA--AGTA-CGGCGCTATAGAG----AAAGTACCGCAAGGGAAC-GATGAAA-GAAAAAAACTAA------------AAGTATAAAAAAG-CAAAGATTACCCCTTGTACCTTTTGCATAATGAATTAACTAGTATAAGACTTAACAAAATGAATTTTAGCTAAGCAGCCCGAAA-CCAGACGAGCTACTCACAAACAGTTT-----ACCAA---GAACTAACTCATCTATGTGGCAAAATAGTGAGAAGATTTGTAAGTAGAGGTGACATGCCTAACGAGCCTGGTGATAGCTGGTTGTCCAGAAAA-T-GAATCTAAGTTCAGCTTTAAA------G-------ATACCA------------------AAAAT----TCA-AAT
|
|
182
|
+
i bosTau2.chrM C 0 C 0
|
|
183
|
+
s canFam2.chrM 866 628 + 16727 AGA------GAGCTTAATTGAATAGGGCCATGAAGCACGCACACACCGCCCGTCACCCTCCT--CAAGTA---ATAAGACA-CAACCATAACCATA-TT---AA-CTTAACTAAAACA--CA--------AGAGGAGACAAGTCGTAACAAGGTAAGCATACCGGAAGGTGTGCTTGGATT--A-ATCAAAGTGTAGCT-TA-A---CTAAAGCGTCTGGCCTACACCCAGAAGAT---TTCATTACTTA--TGGCCACTTTGA-AC--AAAAG-----CTAGCCCAA--C-TAA-CC----------CCAAACTT--AA---------GTA-TTACAGACA-C------------ATAAAATAAAACATT-TAGTT--AAA--CAATAAAAGTATAGGAGATAGAA-----AT-----TTT--AAT--TGGAGCGATAGAG----ATAGTACCGTAAGGGAAT-GATGAAA-G--ACATCTTAA------------CAGTATTAAACAG-CAAAGATTACCCCTTCTACCTTTTGCATAATGAACTAGCCAG-AAACAACTTAACAAAGAGAACTTAAGCTAAGCTCCCCGAAA-CCAGACGAGCTACCCATAAACAATCT-----A-AAA---GGATCAACTCATCTATGTAGCAAAATAGTGAGAAGATTTGTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCACAGAC-A-GAATTTTAGTTCAACTTTAAA------T-------TTACCt------------------aaaa------aa-aat
|
|
184
|
+
i canFam2.chrM C 0 C 0
|
|
185
|
+
s dasNov1.scaffold_23239 4675 637 - 16977 AGA------GAGTTTAGCTGAACCAGGCCATAAAGCACGCACACACCGCCCGTCACCCTCTT--CAATTAT--AAGCGCCA-CATAAACTAAAACA-C----AT-TAATTCAGTAGCA--ACTAT-ATA-AGAAGAGACAAGTCGTAACAAGGTAAACATACTGGAAAGTGTGTTTGGAT---A-ACCAAAGTGTAGCT-TA-C-AACCAAAGCATCCGGCTTACACCCAGAAGAC---TTCAGATAGAC--TGACCACTTTGA-AC--TAGAC-----CTAGCCCTA--A-ACC-CA---------CAACAACAA--TA---------CTA-TCAC--ACAGC-----------AATAAATCAAAACATT-TACCA--AATACTAACTAAAGTATAGGAGATAGAA-----AT-----TTT--ACTA-AGGCGCTATAGAA----ATAGTACCGCAAGGGAAA-GATGAAA-G--ACCCCCTGA------------TAGTAAGAAACAG-CAAAGACTAATACTTTTACCTTTTGCATAATGAATTAACTAG-ACTAATTTTGGCAAAGAGAACTTTAGTCAAATATCCCGAAA-CCAGACGAGCTACTTATGGACAGTAA-----T--TA---GTACTAACTCATCTATGTCGCAAAATAGTGAGAAGATCTGTAAGTAGAGGTGAAAGACCAACCGAGCCTGGTGATAGCTGGTTGCCCA-GAAC-A-GAATTTTAGTTCAACTTAAAA------C-------TTATCT------------------CAAG------AA-CCA
|
|
186
|
+
i dasNov1.scaffold_23239 C 0 I 4
|
|
187
|
+
s loxAfr1.scaffold_36650 3880 627 + 16266 AGA------GAGCTTAATTGAACAAGGCTATGAAGCGCGTACACACCGCCCGTCACTCTCCT--CAAGTATCCCCACATCA-----AACAATCATA-TT---AC-AG--ATTTAAACA--AATAC-A---AGAGGAGACAAGTCGTAACAAGGTAAGCGTACTGGAAAGTGCGCTTGGATA--A-CTCAAAGTGTAGCT-TA-A--CAAAAAGCATCTGGCTTACACCTAGAAGAC---CTCATTTACAA--TGATCACTTTGA-AC--TAAAT-----CTAGCCCTA--C-CAA-CC----------CTACACTC--AA---------TTC-TCAT--ATTAT-----------ATTAAATCAAAACATT-CACTT--AC-----CAAAAAGTATAGGAGATAGAA-----AT-----TTC--ACTA-AGGCGCAATAGAG----ATAGTACCGCAAGGGAAT-GATGAAA-G--ATAGTTTAA------------TAGTAAAAAATAG-CAAGGATTAACCCCTTTACCTTTTGCATAATGAATTAACTAG-AAAA-ATCTGACAAAGAGAACTATAGCCAGAAACCCCGAAA-TCAGACGAGCTATCTGATAGTAATCC-----C--CA---GGATCAATTCATCTATGTGGCAAAATAGTGAAGAAACTTACAGATAGAGGTGAAATACCAATCGAGCCTGATGATAGCTGGTTGTCCA-GAAATA-GAATTTTAGTTCTACCTAAAA------C-------TTACCA------------------CAAA------AACAAA
|
|
188
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
189
|
+
s echTel1.scaffold_181343 131 630 + 18297 AGA------GTGCTCAGTTGAAACTGGCCATGAAGCGCGCACACACCGCCCGTCACCCTCCT--TA---ATTTATATATTATAAGTAACCTCCATA--A---AC-AGCTACTTATACA--CCCCA-T---AAAGGAGACAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTTGGAAA--ACCTCAAAACGTAGCT-TA-A--T-AAAAGCATCTGGCCTACACCCAGAAGAT---TTCA-TGACAC--TGACCGTTTTGA-AC--TAAAT-----CTAGCCCAA--CTCAA-AT----------AGAAACTT--AA----------CC-AAAT--AAAAC-----------TTTAATATAAAACATT-TG-TA--GA-----CATAAAGTATAGGAGATAGAA---ATAT-----TCC--ATAG-ATGCGCTATAGAG----ATAGTACCGTAAGGGAAA-AATGAAA-G--ATAACTTAA------------TAGTACCAAAAAG-CAAAGCTTAAACCTTATACCTTTTGCATAATGAGTAAACTAG-AAAATTTTTGACAAAGGGAACTTTAGCCAAAAACCCCGAAA-CCAGACGAGCTACCCTAGAGCAATCT-----T-GTT---GGATCAACTCATCTATGTGGCAAAATAGTGAGAAGACTTTAAGGTAGAGGTGAAAAGCCAACCGAGCCTGGTGATAGCTGGTTGCCCA-AGAA-A-GAATTTAAGTTCGACCTAAAA------A-------TTACTA------------------CCAA------TA-ACt
|
|
190
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
191
|
+
s monDom4.chrUn 117152298 631 + 174229318 AGA------GTGCTTAATTGAATTAGGCAATAGGGCGCGCACACACCGCCCGTCACCCTCCT--CAACTC---------AA-CCTACAAAAATACT-TA---AT-AA-------TATA--TCTAA-GTAAAGAGGAGAAAAGTCGTAACACGGTAAGTGTACTGGAAAGTGCACTTGGAAT--A--TCAAAATGTAGCT-TA-ACTACTAAAGCATTTAGCTTACACCTAAAAGAT---TTCAGTTAATT-CTGACCATTTTGA-GC--CAATT-----ATAGCTCTA--A-CAA-TC----------TTCAAATA--AA---------CTATTTAT--ACACT------------TATATTTAAAACATT-TTAAT--TC------CCCTAGTATAGGAGATAGAACAGAAAC-----ATA--A----TGAAGCAATAACA----ATAGTACCGTAAGGGAAAAAATGAAA-G--ATAGATTGA------------TAGCATAAAAAAG-CAAAGATTAAACCTTGTACCTTTTGCATAATGATTTAGCCAG-TCAA-CATAGGCAAAAAGAATTTAAGCCTAGAACCCCGAAA-TTAAGTGAGCTACTATAGAACAGTTA-----TTTAT---GAACTTACTCCTCTATGTGGCAAAATAGTGAGAAGATTTTATAGTAGAAGTGAAAAACCTATCGAACTTAATGATAGCTGGTTATCCA-AAAT-ACGAATTTTAGTTCAACCTTAAG------T-------TTAACA------------------CAAAGCATACGA-TAT
|
|
192
|
+
i monDom4.chrUn C 0 C 0
|
|
193
|
+
s galGal2.chrM 2111 664 + 16775 ATACCCCCTAAGCTCACTTTAAGACGGCTCTGAGGCACGTACATACCGCCCGTCACCCTCTT--CACAAGCCATC----AA-CATCAATAAATATA-TA---CT-TCCCCTCCCGGCT--AA--------AGACGAGGCAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTAGACT--A--CCAAGGCGTAGCTATA-A-CTTCAAAGCATTCAGCTTACACCTGAAAGATACCCTCAACAGACA--AGGTCGCCTTGA-CT--TGCCCCCCCTCTAGCCCGA--C-AAA-CT----------CGTACCCT--TA---------ACA-TAAA--AAACT-TACCTCCCCCTCTTAACCAAAACATTATAAAT--TG------TCCCAGTATAGGCGATAGAA-----AA-----GAC--TACCCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAA-GATGAAA-T--AGCAATGAAAACCAT------AAGCAAAAAACAG-CAAAGACCAACCCTTGTACCTTTTGCATCATGATTTAGCAAG-AACA-ACCAAGCAAAGTGAGCTAAAGTTTGCCTTCCCGAAACCCAAGCGAGCTACTTGCGAGCAGCTA-----A--AATTTGAGCGAACCCGTCTCTGTTGCAAAAGAGCGGGATGACTTGCCAGTAGAGGTGAAAAGCCTACCGAGCTGGGTGATAGCTGGTTACCTG-TCAA-ACGAATCTAAGTTCCCCCTTAAC------C-------CACCCC------------------CTAA------AG-ACA
|
|
194
|
+
i galGal2.chrM C 0 I 23
|
|
195
|
+
s xenTro2.scaffold_18215 7 644 + 3330 AGA------GAGCTCTCTTTAA-ATGGCCCTGGGGCGCGCACACACCGCCCGTCACCCTTCTTCCAAAAACCACC----TA-CCTTAAATAAAACA-TT---AC-AA------AAACA--A---------AGAAGAGGCAAGTCGTAACATGGTAAGCGCACCGGAAGGTGCGCTTGGA------ATCAAAGTATAGCT-TA-A--CCTAAAGCCCCTCGCTTACACCGAGACGAT---ATCCGTTAAACCCAGATTACTTTGA-GCCATAAAC-----CTAGCCTTA--T-TAT-TT----------ACCAACAA--AAGATTACCCCCTA-CACCA-ACCCC------------ACCAACTAAACCATT-T---T--AA----ACTTTTAGTATAGGCGATAGAA-----AC-----AAG--TCT--AAGAGCTACATAT----CCAGTACCGCAAGGGAAA-GGTGAAA-T--AGAAATGAAACAAAT--AATAAAGCAACAAACAG-CAGAGAAAAACCCTCGTACCTTTTGCATAATGGTCTAGCAAG-TCCTAGTCAAGCAAAAAGAATTTAAGTTTGACCCCCCGAAA-CTAAGCGAGCTACTCCGAGACAGCTT-----T-TTA---GAGCCAACCCGTCTCTGTGGCAAAAGAGTGGGAAGATCTCCGAGTAGGGGTGACAGACCAAACGAGCTTAGTGATAGCTGGTTGCTCA-GGAA-ACGAATATAAGATCAACTCTAAG------TCCCGTTATTAGCA------------------AACA------AA-GCA
|
|
196
|
+
i xenTro2.scaffold_18215 N 0 C 0
|
|
197
|
+
s tetNig1.chrUn_random 103510618 674 + 171761319 AGA------GTGTCTTACTGAAACCGGCCATGAAGCGCGCACACACCGCCCGTCACTCTCCC--CAAAT----------CA-AACCCAC----CAA-TA---AT-TAATACACTATCA--CACACAA---AGGGGAGGCAAGTCGTAACATGGTAAGTGTACCGGAAGGTGCACTTGGAAA--A-ATCAGAATATAGCT-TAGA-TAGAAAAGCACCTCCCTTACACCGAGGAGCC---ACCCGTGCAAATCGGATTATTCTGACAC--CTAAT---AGCTAGCCCCT--C-CCC-CAAAAACAAAAAATAACTAT--TA---------ATA-CCCC--CTAATACACTTAATTAACCAAAACAAACCATT-TTTCC--CC-------CTAAGTATGGGCGACAGAA-----AAGGACCTAA---------GAGCTACAGAC----AAAGTACCGCAAGGGAAC-GCTGAAA-G--AGAAGTGAAACAACCCAGTTTAAGTACAAAAAAG-CAGAGATTAAACCTCGTACCTTTTGCATCATGATTTAGCCAG-CAAACCTTAGGCAAAGAGCACTTTAGTCTAATTCCCCGAAA-CTGGACGAGCTACTCCAAGACAGCCT-----TCATA---GGGCACATCCGTCTCTGTGGCAAAAGAGTGGAAAGAGCTTTGAGTAGAGGTGACAAACCTACCGAGCCCAGTAATAGCTGGTTGCCCG-AAAA-TTGAGTTTAAGCTCAGCTTTTTAGCTTCTT-------GCCTCACCAACAGTAAAAACACAA----------------
|
|
198
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
199
|
+
s danRer4.chrM 1817 657 + 16596 AGA------GTGTCTCTTTGAACCCGGCTCTAAGGCGCGTACACACCGCCCGTCACTCCCTC--C-GGT----------CA-ATTGCACAAG-AAA-TA---AT-TAATACAGAAGCA--CAGAC-A---AGGGGGGAAAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTGGACATTA-TCCAAGACGTGGCT-GA-A-CAGTTAAGCATCTCACTTACACCGAGAAAAC---ATCCGTGCAAATCGGATCGTCCTGA-GC--TAAAT---AGCTAGCTTAA--C-CAT-CAAGATCAACTTAAAAACAT--CA---------ATA-ACCT--ATAATCAACCTAAAACCACAAACTAAACCATT-ATATT--AT-------CCTAGTATGGGAGACAGAA-----AAGA---TAA--AATA-CTAAGCAATAGAG----AAAGTACCGCAAGGGAAC-GCTGAAA-G--AGAAATGAAATAACCC-GTAAAAGCAATAAAAAG-CAAAGATTAAACCTTGTACCTTTTGCATCATGATTTAGCCAA-C-ACCACTAGGCAAAGAGACCTTTAGTTTAAAGCCCCGAAT-CCAGGTGAGCTACCCCGAGACAGCCTATTTAACTTA---GGGCCAACCCGTCTCTGTGGCAATAGAGTGGGAAGAGCTCCGGGTAGAAGTGACAGACCTATCGAACCCGGCAATAGCTGGTTGTCTG-GGAG-ATGAATAAAAGTTCAGCTTCGTA------C-------ACCCCa----------------------------------
|
|
200
|
+
i danRer4.chrM C 0 I 27
|
|
201
|
+
|
|
202
|
+
a score=160222.000000
|
|
203
|
+
s mm8.chrM 1497 81 + 16299 CAAAATCAAA------AAGTAAG----TTTAGATTATAGCCAAAAGAGGGACAGCTCTTCTGGAA--CGGAAAAAACCTT-TAATAGTGAATAA---------
|
|
204
|
+
s oryCun1.scaffold_140182 1604 81 + 20791 AAAA-CCCTA------ATGAAAA----TTTAAATGTTACTCTAAAGAGGGACAGCTCTTTAGATA-TAGGACACAGCCTT-TTATAAAGAGTAA---------
|
|
205
|
+
i oryCun1.scaffold_140182 C 0 M 1789
|
|
206
|
+
s rn4.chrM 1494 81 + 16300 CAAA-TCAAA------ATGTAAA----CTTAAAATATAGCCAAAAGAGGGACAGCTCTTTAGGAA-ACGGAAAAAACCTT-AAATAGTGAATAA---------
|
|
207
|
+
i rn4.chrM C 0 C 0
|
|
208
|
+
s hg18.chrM 2072 82 + 16571 TAAA-TCCCC------TTGTAAA----TTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAGGAAAAAACCTT-GTAGAGAGAGTAA---------
|
|
209
|
+
i hg18.chrM I 2 C 0
|
|
210
|
+
s panTro2.chrM 1489 82 + 16554 TAAA-TCCCC------TTGTAAA----CTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTAGACACTAGGAAAAAACCTT-GTAAAGAGAGTAA---------
|
|
211
|
+
i panTro2.chrM I 2 C 0
|
|
212
|
+
s rheMac2.chr5 34437184 76 - 182086969 TTAA-TTTCC------CAGTAAG----TGTAACTA-------ACTAAGGGACAGCTCTTTAGACCCTAGGAAACAACCTTCCTACAGAGAGTAA---------
|
|
213
|
+
i rheMac2.chr5 I 1 C 0
|
|
214
|
+
s bosTau2.chrM 1865 79 + 16338 -AAA-CCCCA------CTGTAGC----TTTAAAAGTTAGTCTAAAAAGGTACAGCCTTTTAGAAA-C-GGATACAACCTT-GACTAGAGAGTAA---------
|
|
215
|
+
i bosTau2.chrM C 0 C 0
|
|
216
|
+
s canFam2.chrM 1494 81 + 16727 aaaa-tttta------atgtaaa----tttaaaatataGTCTAAGAAGGTACAGCTTCTTAGAAT-CAGGATACAACCTT-TATTAGAGAGTAT---------
|
|
217
|
+
i canFam2.chrM C 0 C 0
|
|
218
|
+
s dasNov1.scaffold_23239 5316 82 - 16977 TTAA-TCTTA------ATATAAG----TTTTAAATATACTCAATAGAGGTACAGCTCCATTGAAACAGGTATTAAACCTG-CACAGGAGAGTAA---------
|
|
219
|
+
i dasNov1.scaffold_23239 I 4 C 0
|
|
220
|
+
s loxAfr1.scaffold_36650 4507 81 + 16266 ATAA-TTCCA------ATGTAAG----TTTTAGAGATATTCAAAAGGGGTACAGCTCTTTTGACC-AAGGATACAACCTT-GATTAGCGAGTAA---------
|
|
221
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
222
|
+
s echTel1.scaffold_181343 761 81 + 18297 ataa-attta------atgtaat----ttttagttataattaaaaGAGGTACAGCTCTTTTAATT-GAGGAAACAACCTT-ATTTAGAGAGTAA---------
|
|
223
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
224
|
+
s monDom4.chrUn 117152929 81 + 174229318 CAAA-GCATA------TCTTAGA----CTTAATAGTTAATCAAATGAGGGACATCTCATTTGATA-AAGTGGACAAACTT-CATAAGAGGGTAA---------
|
|
225
|
+
i monDom4.chrUn C 0 C 0
|
|
226
|
+
s xenTro2.scaffold_18215 651 75 + 3330 AAA-----------------AACACTTCTTAGAATTTATTCAACCAGGGTACAGCCTGGTTGAAA-CAGGATACAACCTA-CAACTATGGGTAA---------
|
|
227
|
+
i xenTro2.scaffold_18215 C 0 I 10
|
|
228
|
+
s tetNig1.chrUn_random 103511292 89 + 171761319 ------CCGATTTA--AAGAAAC----TAAAAAAGTTAGTCAAAGGGGGTACAGCCCCTCTGACC-CAAGAAACAACTTT-CCCAGGAGAATAAGGATCCTAA
|
|
229
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
230
|
+
s danRer4.chrM 2501 91 + 16596 ------CAAAATTAAGAGAAAAA----TACGAAAGTTAGTTAAAGAGGGTACAGCCCCTTTAACA-AAGGATACAACCTT-TTCAGGAGAATAAAGATCATAA
|
|
231
|
+
i danRer4.chrM I 27 C 0
|
|
232
|
+
s galGal2.chrM 2798 72 + 16775 ----------------CGTTGGG----GTTAAGAGCAATTCGATGGGGGTACAGCTCCATCGAAA-AAGAACACAACCTC-CTCCAGCGGATAA---------
|
|
233
|
+
i galGal2.chrM I 23 C 0
|
|
234
|
+
|
|
235
|
+
a score=164919.000000
|
|
236
|
+
s mm8.chrM 1578 166 + 16299 TTAACAAAAC---------AGCTTTT--------------AACCAT-------TGTAGGCCTAAAAGCA-GCCACCAAT-AAAGAAAGCGTTCAAGCTCAACATAAAATTTCA-----ATTAATTCCA--TAA-------TTTACACCAA----------CT-TCCTAA-----ACT-TA-AAATTGGGTTAA-TCTATAACTTTATAGATGCAACACTGTTAGTATGAGT
|
|
237
|
+
s rn4.chrM 1575 163 + 16300 ACAACTACA----------ATCACTT--------------AACCAT-------TGTAGGCTTAAAAGCAAGCCATCAAT-AAAGAAAGCGT-CAAGCC--ACATCATCTTACACACACACTAATTCCA--CAA-------ACCTCAAAAA-----------T-TCCAAA-----ATT-AC-AAATTGGGCTAAATCTATGATCCTAGTGA----ATACTGTTAATATGTG-
|
|
238
|
+
i rn4.chrM C 0 C 0
|
|
239
|
+
s oryCun1.scaffold_116167 3974 163 + 15695 -------------------GTTATTTTC-----------AATCCAT-------AGTTGGCTTAAAAGCA-GCCATCAAT-TAAGAAAGCGTTAAAGCT---CAACAACTAAAA-----ACCAACTTAA--TAAGAATATTTTAAAACGAA----------CT-CTTATA-----AAC-CC-TAACTGGACTAA-TCTATAAATCTATAGAAGAAATAATGCTAATATAAGT
|
|
240
|
+
i oryCun1.scaffold_116167 n 0 C 0
|
|
241
|
+
s hg18.chrM 2154 159 + 16571 ------AAA----------ATTTAAC--------------ACCCAT-------AGTAGGCCTAAAAGCA-GCCACCAAT-TAAGAAAGCGTTCAAGCT---CAACACCC---------ACTACCTAAA--AAA-------TCCCAAACATATAAC---TGAA-CTCCTC-----ACA-CC-CAATTGGACCAA-TCTATCACCCTATAGAAGAACTAATGTTAGTATAAGT
|
|
242
|
+
i hg18.chrM C 0 C 0
|
|
243
|
+
s panTro2.chrM 1571 159 + 16554 ------AAA----------ATTTAAC--------------ACCCAT-------AGTAGGCCTAAAAGCA-GCCACCAAT-TAAGAAAGCGTTCAAGCT---CAACACCC---------ACAACCTTAA--AGA-------TCCCAAACATACAAC---CGAA-CTCCTT-----ACA-CC-CAATTGGACCAA-TCTATTACCCCATAGAAGAACTAATGTTAGTATAAGT
|
|
244
|
+
i panTro2.chrM C 0 C 0
|
|
245
|
+
s rheMac2.chr5 34437260 158 - 182086969 ------AAA----------ATATTAC--------------CACCAT-------AGATGGCCCAAAAGCA-ACCACCAGT-TAAGAAAGCATTTAAATT---CAACTTCT---A-----ACTATCTTCA----A-------TTCTAATCACTCTAC---TGTT-CTCCTA-----ACA-CC-ACATTGGACTAA-TCTATTATGTAATAGAAGCAATAATGTTAATATAAGT
|
|
246
|
+
i rheMac2.chr5 C 0 C 0
|
|
247
|
+
s bosTau2.chrM 1944 161 + 16338 ------AAT----------TTAACAC--------------TACCAT-------AGTAGGCCTAAAAGCA-GCCATCAAT-TAAGAAAGCGTTAAAGCT---CAACAACA---------AAAATTAAAT--AGA-------TTCCAACAACAAATG--ATTAA-CTCCTA-----GCC-CCAATACTGGACTAA-TCTATTATAGAATAGAAGCAATAATGTTAATATGAGT
|
|
248
|
+
i bosTau2.chrM C 0 C 0
|
|
249
|
+
s canFam2.chrM 1575 161 + 16727 ------ATA----------CTAATAT--------------CACCAT-------AGTTGGCTTAAAAGCA-GCCACCAAT-TGAGAAAGCGTTCCAGCT---CAACAAAC---------AATA-TAACT--TAA-------TCCCAACCATACTAC--ATCAA-CTCCTAATTATACC-CC----CTGGGTCAT-TCTATTTAAGTATAGAAGCAATAATGCTAGTATGAGT
|
|
250
|
+
i canFam2.chrM C 0 C 0
|
|
251
|
+
s dasNov1.scaffold_23239 5398 161 - 16977 --GCCGTAT----------AAAACAC--------------TTACAT-------AGTTGGCCTAAAAGCA-GCCATCAAT-AAAGAAAGCGTTAAAGCT---CAACAACA---------AAACAATGAC--AGA-------TACCAAAAAC-CACT--GCCAC-CTCCCA-----ACC-TA-ATACTGGGCCAA-TCTATA--TAAATAGAAGAGATAATGTTAGTATAAGT
|
|
252
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
253
|
+
s loxAfr1.scaffold_36650 4588 164 + 16266 ---------ATTCA-----CCATTAA--------------TTTCAT-------AGTTGGCTTAGAAGCA-GCCATCAAT-TAAGAAAGCGTTAAAGCT---CAACAACC---A-----ACCAAACTAAAAAGA-------TTCCAAA-ATTAATT-AATGAT-CTCCTA-----AACATA-ATACTGGACTAA-TCTAT--ATAAATAGAAGAAATAATGTTAGTATAAGT
|
|
254
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
255
|
+
s echTel1.scaffold_181343 842 159 + 18297 ---------ACAC------CAAATAA--------------TTTCAT-------AGTTGGCCTAAAAGCA-GCCACCAAT-TAAGACAGCGTTAAAGCT---CAACAATT---T-----ATTTCTCT----AGA-------TTCC----ATTAATTCAATTCTACTCCTA-----AAT-TT-ATATTGGGCAAA-TCTATTCTTATATAGAAGCTAATCTGTTAACATAAGT
|
|
256
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
257
|
+
s monDom4.chrUn 117153010 162 + 174229318 -------------TGACTTATTTTAA--------------CCCCAT-------CGTAGGCCTAAGAGCA-GCCACCAAT-TAAGAAAGCGTTAAAGCT---CAAACATA--GA-----ATTTTATTCA--ATA-------CCCTAAAACTATCAA-----AA-CCCCTA-----TAA-CA-ATATTGGATGAT-TCTATTAAACTATAGAAGACATAATGCTAAAATCAGT
|
|
258
|
+
i monDom4.chrUn C 0 C 0
|
|
259
|
+
s galGal2.chrM 2870 152 + 16775 -------------TAATCACCCCTCC--------------CCGCAC-------TGTGGGCCTTCAAGCA-GCCACCAACAAAAGAGTGCGTCAAAGCT---C----------------CCTCATTAAA--AAA-------TCTAAAACCCTATTT-----GA-CTCCCT-----CAA-CC-AAAGCAGGTTAA-CCTATGA--CAATAGAAGAATCAATGCTAAAATGAGT
|
|
260
|
+
i galGal2.chrM C 0 C 0
|
|
261
|
+
s xenTro2.scaffold_18215 736 160 + 3330 --------------------------TCGACAGGAAAATGAACCA---------GTGGGCCTAAAAGCA-GCCACCTGT-TAAGAAAGCGTCAAAGCT---CCCTCATA---------TACCTTCCGC--CAA-------TACCGACATCTCCTC----CGA-ACCCTT-----TTT-CC-GTACTGAGCTGT-TCAATTCTAATATTGAAGCACCTATGCTAGAACTAGT
|
|
262
|
+
i xenTro2.scaffold_18215 I 10 M 106
|
|
263
|
+
s tetNig1.chrUn_random 103511381 162 + 171761319 -------------------TAACAAA--------------GGCCATGTGTTTAGGTGGGCCTAAAAGCA-GCCACCC-T-ATTGAAAGCGTTAAAGCT---CAAACACA---------CCCCCGCCAC--TAA-------TACCGATAAATACAT---CCTA-ACCCCT-----GAC-CC-TTATCGGGCCTT-TCTATGCATACATAGAAGAGACTATGCTAATATGAGT
|
|
264
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
265
|
+
s danRer4.chrM 2592 163 + 16596 ------------------TTTACAAA--------------ACACGT-TGTCGTAGTGGGCCTGGAAGCA-GCCACCTAA-AAAGAAAGCGTTAAAGCT---CAGGTAAG---------AAGAAATTCA--TAA-------TTCTGACAATAATAT---CTTA-CTTCCC-----TAA-AA-ATACCAGACTAA-TCCATACAAATATGGAAGAAATTATGCTAAAATGAGT
|
|
266
|
+
i danRer4.chrM C 0 C 0
|
|
267
|
+
|
|
268
|
+
a score=-81423.000000
|
|
269
|
+
s mm8.chrM 1744 113 + 16299 AACAAGAA----TTCCAATTCTC---------------CA--GGCATACGCG-TATAACA----A---CTCGGATA-ACC--ATTGTTAGTTAATCAGACT------------ATAGGC-----A-------ATAATCACA-CTATA-AATAATCCACCTATAACTT-CT-CT---
|
|
270
|
+
s galGal2.chrM 3022 103 + 16775 AATCTGGA-----ACCTATCCTC---------------CTACGGCGTAAACT-TACATTA----A--------TAC-ATT--ATTAACAGAAC-TCAACTT------------ATACCC-----C--------CACACTAA-CAAGC-AAT-ACGTAT---TCCTCA-AT-CT---
|
|
271
|
+
i galGal2.chrM C 0 C 0
|
|
272
|
+
s monDom4.chrUn 117153172 110 + 174229318 AATAAGAA------CTCATTCTC---------------CT--TGCATAAGCC-TAAGTTA----GCCAACGGATTA-CCC--ACTAACACCTA-ACAAATAC----------AATATCT-----T--------TAATT-AA-CAACC-AGTGAATTAC---CCCAAT-AA-TT---
|
|
273
|
+
i monDom4.chrUn C 0 C 0
|
|
274
|
+
s echTel1.scaffold_181343 1001 107 + 18297 AACAAGAGA---ATAAATCTCTC---------------CC--CGCACAAGTA-TATATCA----G---AACGAATA-CTC--GCTGATAATTA-ACAACCT-----------AGTAATT----------------ATACAA-ACTCT-AGACTATTAT---ATTTAC-AC-TT---
|
|
275
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
276
|
+
s loxAfr1.scaffold_36650 4752 106 + 16266 AATAAGAA------GTATTTCTC---------------CC--TGCATAAGCT-TATATCA----G---GTCGGATG-CCC--GCTGATAGTTA-ACAACCG-----------AATAATT-----A---------GATACAA-AAATA-GAACCTTTAT---TATACC-AA-TT---
|
|
277
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
278
|
+
s dasNov1.scaffold_23239 5559 109 - 16977 AACAAGAA------TATTTTCTC---------------CG--TGCATAAGTG-TATATCA----G---ACCGGATAGACC--ACTGATAGTTA-ACA---------------AATAGGC-----ACCAAACTACCACCAAA-CAATA-ACAATGCCAT---ACACCT-----T---
|
|
279
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
280
|
+
s canFam2.chrM 1736 110 + 16727 AACAAGAA-----CCATTTTCTC---------------CC--CGCATAAGCT-TATATCA----G-GAACGGATAG-ACC--ACTGATAGTTA-ACAATCT-----------GATAATA-----T--------CAACCCAA-AAATG-AAATACTTAT---CCACCC-CA-TT---
|
|
281
|
+
i canFam2.chrM C 0 C 0
|
|
282
|
+
s bosTau2.chrM 2105 109 + 16338 AACAAGAA-----AAATTTTCTC---------------CT--TGCATAAGTC-TAAGTCA----G-TGCCTGATAA-TAC--TCTGACCACTA-ACAGTC------------AATAAAA-----A--------TAATCCAA-CAATA-AACAATTTAT---TGATTA-TA-CT---
|
|
283
|
+
i bosTau2.chrM C 0 C 0
|
|
284
|
+
s rheMac2.chr5 34437418 121 - 182086969 AACATGAA------GATATTCTCTATTACATAAGCTTACA-CTGCATAAGCC-TACATCA----G---AATAACCC------ACTAACAGTTA-ACAGCCT-----------AATATTA-----A--------TAAACGATATAATA-AGCACCCTAT---TATTTA-CA-CT---
|
|
285
|
+
i rheMac2.chr5 C 0 C 0
|
|
286
|
+
s panTro2.chrM 1730 109 + 16554 AACATGAA------AACATTCTC---------------CT-CCGCATAAGCC-TACATCA----G---ACCAAAAT-ATTAAACTGACAATTA-ACAGCCT-----------AATATCT-----A--------CAATCAAC-CAACA-AGC-CATTAT---TACCCC-CG-CT---
|
|
287
|
+
i panTro2.chrM C 0 C 0
|
|
288
|
+
s hg18.chrM 2313 109 + 16571 AACATGAA------AACATTCTC---------------CT-CCGCATAAGCC-TGCGTCA----G---ATCAAAAC-ACTGAACTGACAATTA-ACAGCCC-----------AATATCT-----A--------CAATCAAC-CAACA-AGT-CATTAT---TACCCT-CA-CT---
|
|
289
|
+
i hg18.chrM C 0 C 0
|
|
290
|
+
s oryCun1.scaffold_116167 4137 110 + 15695 AACAAGAA-----TACTATTCTC---------------CT--TGCACAAGCT-TATATCA----G---ATCGGATG-CCC--ACTGATAGTTA-ACAGCCCT----------AATAGAA-----A--------TAATCCAC-AAATT-AATAATCTAT---TAACTTTCA-CT---
|
|
291
|
+
i oryCun1.scaffold_116167 C 0 C 0
|
|
292
|
+
s rn4.chrM 1738 106 + 16300 AACAAGAA------CCAATCCAC---------------CA--AGCACAAGTGCTAAGACA----A---C-CGGATA-ACC--ATTGTTAATTA-TTGAATC------------ATAGGC-----A--------TAACCCAA-CAATAGAATTACCTATCCCTAACTC---------
|
|
293
|
+
i rn4.chrM C 0 C 0
|
|
294
|
+
s tetNig1.chrUn_random 103511543 130 + 171761319 AATAAG--GGGCCAGACCCCCTC---------------CA--AGCACAAGTG-TACATCG----G---AACGAACT-CGC--ACCGAAGACTA-ACGAACCCAACCAAAGAGGGCAATGAATATC--------AAACCAAA-CAACA-AGAAAAACAT---TCACAA-CC-CCACC
|
|
295
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
296
|
+
s danRer4.chrM 2755 127 + 16596 AACAAGAAGAACCTGTACTTCTC---------------CA--AGCACAAGTG-TAAGCCAAGTTG---GACAAAC----C--ATTGGCAATTA-ACGAGCCCAAACAAAGAGGGCAATG-----T--------GAGTTAAA-AACTG-AGAAAA--AT---CCACAA-CAGACATC
|
|
297
|
+
i danRer4.chrM C 0 C 0
|
|
298
|
+
e xenTro2.scaffold_18215 896 106 + 3330 M
|
|
299
|
+
|
|
300
|
+
a score=2385506.000000
|
|
301
|
+
s mm8.chrM 1857 323 + 16299 GTTAACCCAACACCGGAATGC---C-T----AAAGGAAAGATCCAAAAAGATAAAAGGAACTCGGCAAA--CAAGAACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACAAGT--ATTAGAGGCACTGCCTGCCCAGTGAC-TA---A-A-GTTTaacggccgcggtatcctgaccgtgcaaaggtagcataatcacttgttccttaattagggactagcatgaacggctaaacgagggtccaactgtctcttatctttaatcagtgaaattgacctttcagtgaagaggctgaaatataataataagacgagaagaccctatggagcttaaATT
|
|
302
|
+
s rn4.chrM 1844 320 + 16300 GTTAGCCCAACACAGGCGTGC---T-T----TAAGGAAAGTTTAAAAAAGT--AAAGGAACTCGGCAAA--CACGAACCCCGC-CTGTTTACCAAAAACATCTCCTCTAGC---ATAACAAGT--ATTAGTGGCATCGCCTGCCCAGTGAC-TA---A-A-GTTCCACGGCCGCGGTATCCCGACCGTGCAaaggtaggataatcacttgttccttaattagggactagaatgaatggctaaacgagggtccaaccgtctcttacttgcaatcagtgaaattgaccttccagtgaaggggcggactcataataa-aagacgagaagaccctatggagcttTAATT
|
|
303
|
+
i rn4.chrM C 0 C 0
|
|
304
|
+
s oryCun1.scaffold_116167 4247 324 + 15695 GTTAACCCAACACAGGAGTGC---TAT----ATAGGAAAGATTAAAAGAAGAAAAAGGAACTCGGCAAA--CCCTAACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACTAGT--ATTAGAGGCACTGCCTGCCCAGTGAC-GT---A-C-GTTCAACGGCCGCGGTATCCTGACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTGGGGACTAGCATGAATGGCAACACGAGGGTTAAACTGTCTCTTTCTTCCAATCAGTGAAATTGACCTCCCCGTGAAGAGGCGGGGATAAAATAATAAGACGAGAAGACCCTATGGAGCTTTAATT
|
|
305
|
+
i oryCun1.scaffold_116167 C 0 C 0
|
|
306
|
+
s hg18.chrM 2422 323 + 16571 GTCAACCCAACACAGGCATGC---T-CA---TAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAA--C-CTTACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATCACCAGT--ATTAGAGGCACCGCCTGCCCAGTGAC-AC---A-T-GTTTAACGGCCGCGGTACCCTAACCGTGCAaaggtagcataatcacttgttccttaaatagggacctgtatgaatggctccacgagggttcagctgtctcttacttttaaccagtgaaattgacctgcccgtgaagaggcgggcatgacacagcaagacgagaagaccctatggagctttaatt
|
|
307
|
+
i hg18.chrM C 0 C 0
|
|
308
|
+
s panTro2.chrM 1839 323 + 16554 GTTAACCCAACACAGGCATGC---C-CA---CAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAA--T-CTTACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACCAGT--ATTAGAGGCACCGCCTGCCCGGTGAC-AT---A-T-GTTTAACGGCCGCGGTACCCTAACCGTGCAaaggtagcataatcacttgttccttaaatagggacttgtatgaatggctccacgagggtttagctgtctcttactttcaaccagtgaaattgacctacccgtgaagaggcgggcataacataacaagacgagaagaccctatggagcttTAATT
|
|
309
|
+
i panTro2.chrM C 0 C 0
|
|
310
|
+
s rheMac2.chr5 34437539 315 - 182086969 GTTAACCCAACAAAGGCATGC---T-C----TAAGGAAAGTTTACAAAAAGTGAAAGGAACTCAGCAAA--T-CTTACCCTGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACCAGT--ATTAGAGGCACTGCCTGCCCAGTGAC-GT---A-T-GTTCAACAGCTGCCATATCCTGACCATGCAAAGGTAGCATAATCACTTGTTCCCTAAGTAGGCACTTGTATGAATTGCTACACGAGGGTTCATCAGTCTCTTACTTT-------TGAAATTGACCTATCCGTGAAGAGATGGATATAAACAAATAAGATGAGAAGACCCTATGGAGCTTTAATT
|
|
311
|
+
i rheMac2.chr5 C 0 I 384
|
|
312
|
+
s bosTau2.chrM 2214 324 + 16338 GTTAACCCAACACAGGAGTGC---A-TC---TAAGGAAAGATTAAAAGAAGTAAAAGGAACTCGGCAAA--CACAAACCCCGC-CTGTTTACCAAAAACATCACCTCCAGC---ATTCCCAGT--ATTGGAGGCATTGCCTGCCCAGTGAC-AA---C-T-GTTTAACGGCCGCGGTATCCTGACCGTGCAAAGGTAGCATAATCATTTGTTCTCTAAATAAGGACTTGTATGAATGGCCGCACGAGGGTTTTACTGTCTCTTACTTCCAATCAGTGAAATTGACCTTCCCGTGAAGAGGCGGGAATGCACAAATAAGACGAGAAGACCCTATGGAGCTTTACCT
|
|
313
|
+
i bosTau2.chrM C 0 C 0
|
|
314
|
+
s canFam2.chrM 1846 324 + 16727 GTTAACCCAACACAGGTATGC---A-TT---CAAGGAAAGATTAAAAGGAGTAAAAGGAACTCGGCAAA--CACAAACCCCGC-CTGTTTACCAAAAACATCACCTCCAGC---ATTTCTAGT--ATTGGAGGCACTGCCTGCCCGGTGAC-AC---T-T-GTTTAACGGCCGCGGTATCCTGACCGTGCAAAGGTAGCATAATCATTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTAACTGTCTCTTACTCCCAATCAGTGAAATTGACCTTCCCGTGAAGAGGCGGGAATACCACAATAAGACGAGAAGACCCTATGGAGCTTTAATT
|
|
315
|
+
i canFam2.chrM C 0 C 0
|
|
316
|
+
s dasNov1.scaffold_23239 5668 327 - 16977 GTTAATCCAACACAGGCATGC---A-TAACTAACGGAAAGATTTAAAGGAATAGAAGGAACTCGGCAAA--CACGAATCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACAATT--ATTAGAGGCACCGCCTGCCCAGTGAC-AC---A-C-GTTTAACGGCCGCGGTACCCTGACCGTGCAAAGGTAGCATAATCACTTGTTCTCTAATTAAGGACCCGTATGAATGGCTAAACGAGGTTTCTACTGTCTCCTATTCCCTATCAGTAAAATTGACCTTCCCGTGAAGAGGCGGGAATAATCATATAAGACGAGAAGACCCTGTGGAGCTTAAATT
|
|
317
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
318
|
+
s loxAfr1.scaffold_36650 4858 324 + 16266 GTTAACCCAACACAGGCATGC---T-T----AAGGGAAAGATTAAAAGAAGGAAAAGGAACTCGGCAAA--CACAAACCCCGC-CTGTTTACCAAAAACATCACCTCGAGC---ATTACTAGT--ATTCGAGGCACTGCCTGCCCAGTGAC-CA---AGC-GTTAAACGGCCGCGGTACTCTGACCGTGCAAAGGTAGCATAATCATTTGTTCCTTAATTAGGGACTTGTATGAACGGCCACACGAGGGTTTAACTGTCTCTTTCCTCTAATCAATGAAATTGACCTTCTCGTGAAGAGGCGAGAATAAACATATAAGACGAGAAGACCCTATGGAGCTTAAATT
|
|
319
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
320
|
+
s echTel1.scaffold_181343 1108 326 + 18297 GTTAACCCAACACAGGAGTGCACTC-T----AAAGGAAAGATAAAAAGAAGTAAAAGGAACTCGGCAAA--CTAAAATCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTACTAGT--ATTGGAGGCACTGCCTGCCCAGTGAC-CC---A-T-GTTTAACGGCCGCGGTACTCTGACCGTGCAAAGGTAGCATAATCATTTGTTCTCTAAATAAGGACTTGTATGAATGGCAACACGAGGATTTAACTGTCTCTTACTTCTTATCAGTGAAATTGACCTCCCCGTGAAGAGGCGGGGATTAGAACATAAGACGAGAAGACCCTATGGAGCTTAAATT
|
|
321
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
322
|
+
s monDom4.chrUn 117153282 327 + 174229318 GTTAACCCAACACAGGCATGC---A-CTACTAAAGGACAGATTAAAAAGAATAAAAGGAACTCGGCAAA--CCAAAACCCCGC-CTGTTTACCAAAAACATCACCTCTAGC---ATTTCAAGT--ATTAGAGGCACTGCCTGCCCAGTGAA-TT---A-A-TTTTaacggccgcggtatcctgaccgtgcaaaggtagcataatcacttgtctcctaaatagagacttgtatgaatggcaaaacgagggtttaactgtctctttttctcaatcaatgaaattgacctacccgtgcagaggcgggtataactttataagacgagaagaccctgtggagcttaaAAT
|
|
323
|
+
i monDom4.chrUn C 0 I 9
|
|
324
|
+
s galGal2.chrM 3125 327 + 16775 GTTAAGCCAACCCAGGAGCGC---C------CACAGGATGATTAAAACCTACAGAAGGAACTCGGCAAA--CCAAAGACCCGA-CTGTTTCCCAAAAACATAGCCTTCAGCT-AACAACAAGT--ATTGAAGGTGATGCCTGCCCAGTGAC-CCCCAA-A-GTTCAACGGCCGCGGTATCCTAACCGTGCGAAGGTAGCGCAATCAATTGTCCCGTAAATTGAGACTTGTATGAATGGCTAAACGAGGTCTTAACTGTCTCCTGTAGGTAATCTATGAAATTAGTATTCCCGTGCAAAAACGAGAATGTGAACATAAGACGAGAAGACCCTGTGGAACTTTAAAA
|
|
325
|
+
i galGal2.chrM C 0 C 0
|
|
326
|
+
s xenTro2.scaffold_18215 1002 327 + 3330 GTTAACCTAACACAAGAGCAT---T------TAAAGAAAGATTAAAAGATGCAGAAGGAACTCGGCAAA--AGTGAACCCCGCNCTGTTTACCAAAAACATCGCCTCTTGCCAAACAACACGT--ATAAGAGGTCCAGCCTGCCCAGTGACTAT---A-T-GTTCAACGGCCGCGGTATTCTGACCGTGCAAAGGTAGCGTAATCACTTGTCTTTTAAATAAAGACTGGTATGAATGGCACCACGAAGGTTCAACTGTCTCCTGCATCCAATCCATTAAACTGACCTCCCCGTGCAGAGGCGGGGATATTCCCATAAGACGAGAAGACCCTATGGAGCTTTAAAC
|
|
327
|
+
i xenTro2.scaffold_18215 M 106 C 0
|
|
328
|
+
s tetNig1.chrUn_random 103511673 329 + 171761319 GTTAACCCTACACTGGCGTGC---C-TA---ATTGGAAAGACTTAAAGAAAAAGAAGGAACTCGGCAAACCCATAAGCCTCGC-CTGTTTACCAAAAACATCGCCTCTTGC---AAAAACAATGAATAAGAGGTCCCGCCTGCCCTGTGAC-TA---T-ACGTTTAACGGCCGCGGTATTTTGACCGTGCAAAGGTAGCGCAATCACTTGTCCTTTAAATGGGGACCTGTATGAATGGCACGACGAGGGCTTAACTGTCTCCTTTTTCAAGTCAATGAAATTGATCTTTCCGTGCAGAAGCGGGAATAAAAACATAAGACGAGAAGACCCTATGGAGCTTTAGAC
|
|
329
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
330
|
+
s danRer4.chrM 2882 324 + 16596 GTTACCCCCACACTGGAGTGC---A-TA---TAAGGAAAGACTAAAAGAAAGGGAAGGAACTCGGCAAA--CACAAGCCTCGC-CTGTTTACCAAAAACATCGCCTCCTGA---CATCCCAAT--ATAGGAGGTCCAGCCTGCCCAGTGAC-AA---T-A-GTTTAACGGCCGCGGTATTTTGACCGTGCAAAGGTAGCGCAATCACTCGTCCTTTAAATAGGGACCTGTATGAATGGCCAAACGAGGGCTTAACTGTCTCCCCCATCAAGTCAGTGAAATTGATCTATCCGTGCAGAAGCGGATATAATAATACAAGACGAGAAGACCCTTTGGAGCTTAAGGT
|
|
331
|
+
i danRer4.chrM C 0 C 0
|
|
332
|
+
|
|
333
|
+
a score=-149774.000000
|
|
334
|
+
s mm8.chrM 2180 39 + 16299 ATATAACTT-A--TCTATTTAATTTATTAAACCT--AAT------GGCCC
|
|
335
|
+
s rn4.chrM 2164 37 + 16300 TACTAATTT-----CAATTTATATAAAAAAACCT--AAT------GGGCG
|
|
336
|
+
i rn4.chrM C 0 C 0
|
|
337
|
+
s oryCun1.scaffold_116167 4571 41 + 15695 ATTTAACCC-A--ACACTTCCTTTATTCTACTCTACAAT------GAGCC
|
|
338
|
+
i oryCun1.scaffold_116167 C 0 C 0
|
|
339
|
+
s panTro2.chrM 2162 37 + 16554 CATTAATGCAA--ACAAT---ACTTAACAAACCT--ACA------GGTCC
|
|
340
|
+
i panTro2.chrM C 0 I 2
|
|
341
|
+
s hg18.chrM 2745 37 + 16571 taTTAATGCAA--ACAGT---ACCTAACAAACCC--ACA------GGTCC
|
|
342
|
+
i hg18.chrM C 0 I 2
|
|
343
|
+
s bosTau2.chrM 2538 17 + 16338 -------------------------AACCAACCC--AAA------GAGAA
|
|
344
|
+
i bosTau2.chrM C 0 I 21
|
|
345
|
+
s canFam2.chrM 2170 23 + 16727 -------------------------AACTAACCC--AAACTTATGGATAC
|
|
346
|
+
i canFam2.chrM C 0 I 18
|
|
347
|
+
s dasNov1.scaffold_23239 5995 38 - 16977 AACTAGATC-A--GCAATATCAACATATCCATCA--ACA------GATA-
|
|
348
|
+
i dasNov1.scaffold_23239 C 0 I 1
|
|
349
|
+
s loxAfr1.scaffold_36650 5182 37 + 16266 AACTAATTTAA--TTGCT---AGCCTATAAATCT--ATA------AGATA
|
|
350
|
+
i loxAfr1.scaffold_36650 C 0 I 1
|
|
351
|
+
s echTel1.scaffold_181343 1434 35 + 18297 AA-TAACCCAA--TTGTT----TCTCACAAAACC--AAA------AGGCA
|
|
352
|
+
i echTel1.scaffold_181343 C 0 I 1
|
|
353
|
+
s monDom4.chrUn 117153618 28 + 174229318 AATTAATTTAT--ACTAT-----------ACCCT--AAG------GGAT-
|
|
354
|
+
i monDom4.chrUn I 9 C 0
|
|
355
|
+
s galGal2.chrM 3452 29 + 16775 -------------TCACGACCACCTTACAACCTT--ACA------CAGCC
|
|
356
|
+
i galGal2.chrM C 0 I 11
|
|
357
|
+
s xenTro2.scaffold_18215 1329 36 + 3330 ---TTACGGCA--ACTGCTAAACAATCCAACCCC--ACA------CGGG-
|
|
358
|
+
i xenTro2.scaffold_18215 C 0 I 4
|
|
359
|
+
s tetNig1.chrUn_random 103512002 26 + 171761319 -----ATAAAA--CAGATCACGTCAAACACCCT-----------------
|
|
360
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
361
|
+
s danRer4.chrM 3206 28 + 16596 -----ACAAGATTTAATTTACATCAAGCAAACC-----------------
|
|
362
|
+
i danRer4.chrM C 0 C 0
|
|
363
|
+
e rheMac2.chr5 34437854 384 - 182086969 I
|
|
364
|
+
|
|
365
|
+
a score=88545.000000
|
|
366
|
+
s mm8.chrM 2219 80 + 16299 ------------AAAA-------------ACTATAG---TATAAGT---T-TG-------AAATTTCGGTTGGGGTGACCTCGGAGAATAAAAAATCCTCC-----GAAT-----GA----------------TTATAACCTAGA
|
|
367
|
+
s rn4.chrM 2201 83 + 16300 ------------AAAACA-----------ACAAAAT---TATGAAC---TACC-------AAATTTCGGTTGGGGTGACCTCGGAGAATAAAAAATCCTCC-----GAAT-----GA----------------TTATAACCGAGT
|
|
368
|
+
i rn4.chrM C 0 C 0
|
|
369
|
+
s oryCun1.scaffold_116167 4612 83 + 15695 ------------TAACCA-----------AGGAAAT--CCCTGGGT---T-AA-------AAATTTTGGTTGGGGTGACCTCGGAGTATAAATCAACCTCC-----GAAT-----GA----------------TTTTAGCCTAGA
|
|
370
|
+
i oryCun1.scaffold_116167 C 0 C 0
|
|
371
|
+
s hg18.chrM 2784 79 + 16571 --------------AACT-----------ACCAAA----CCTGCAT---T-AA-------AAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCC-----GAGC-----AG----------------TACATGCTAAGA
|
|
372
|
+
i hg18.chrM I 2 C 0
|
|
373
|
+
s panTro2.chrM 2201 79 + 16554 --------------AACT-----------ATTAAA----CCTGCAT---T-AA-------AAATTTCGGTTGGGGCGACCTCGGAGCACAACCCAACCTCC-----GAGC-----AA----------------TACATGCTAAGA
|
|
374
|
+
i panTro2.chrM I 2 C 0
|
|
375
|
+
s rheMac2.chr5 34438238 81 - 182086969 --------------aaaa-----------aatata----tatatatatat-at-------atatGTTGGTT-GGGTGACCCCGGAGCATAATTCAACCTCC-----GAAC-----GA----------------CCTAAACTAAGA
|
|
376
|
+
i rheMac2.chr5 I 384 C 0
|
|
377
|
+
s bosTau2.chrM 2576 83 + 16338 --------------AACA-----------ACAATCT--CCATGAGT---T-GG-------TAGTTTCGGTTGGGGTGACCTCGGAGAATAAAAAATCCTCC-----GAGC-----GAT-----------T---TTAAAGACTAGA
|
|
378
|
+
i bosTau2.chrM I 21 C 0
|
|
379
|
+
s canFam2.chrM 2211 85 + 16727 --------------AACATAA-------CACCATTA--TTATGAGT---T-AG-------CAATTTAGGTTGGGGTGACCTCGGAATATAAAAAAACTCCC-----GAGT-----GA----------------TTAAAATTTAGA
|
|
380
|
+
i canFam2.chrM I 18 C 0
|
|
381
|
+
s dasNov1.scaffold_23239 6034 80 - 16977 ------------AAAACA-----------GAATGA----TATGAAC---T-AT-------TAATTTTGGTTGGGGTGACCTCGGAGCACAGCAAAACCTCC-----GAAT-----GA-----------------CAGCGCCAAGA
|
|
382
|
+
i dasNov1.scaffold_23239 I 1 C 0
|
|
383
|
+
s loxAfr1.scaffold_36650 5220 84 + 16266 --------------AACT-----------A-AACAG---CATGATAAATT-AA-------CAATTTTGGTTGGGGTGACCTCGGAGAAGAAAAAATCCTCC-----GAAC-----GAT-----------A---TTATAATTTAGA
|
|
384
|
+
i loxAfr1.scaffold_36650 I 1 I 1
|
|
385
|
+
s echTel1.scaffold_181343 1470 81 + 18297 --------------AACT-----------ATAACTA---TATGGAG-----AA-------AGATTTCGGTTGGGGTGACCTCGGAGCATAATTAAACCTCC-----GAAT-----GAT-----------A---TATACATCTAGA
|
|
386
|
+
i echTel1.scaffold_181343 I 1 M 388
|
|
387
|
+
s monDom4.chrUn 117153646 83 + 174229318 ------------------TAATCT----TACAAAAC--TTTTTAAG---C-TG-------AATTTTTGGTTGGGGTGACCTCGGAGCACAAGCAACCCTCC-----GAAT-----GA-----------------CATAACTAAGA
|
|
388
|
+
i monDom4.chrUn C 0 C 0
|
|
389
|
+
s galGal2.chrM 3492 96 + 16775 ---------------------ACCCACACATAAACC---CCTGGTC---G-AC-------ATTTTTCGGTTGGGGCGACCTTGGAGAAAAAAAAATCCTCC-----AAACCCACAGACCAC------AAC---TCTTCACTAAGA
|
|
390
|
+
i galGal2.chrM I 11 C 0
|
|
391
|
+
s xenTro2.scaffold_18215 1369 100 + 3330 ------------CAGACA-----------ATTAAGCAACAATGACC---T-AA-------AGTTTTCGGTTGGGGCGACCACGGAGAAAAAAAAATCCTCCTTGATGTAC-----GGGGCCT---TACCC---TCTTAACCAAGA
|
|
392
|
+
i xenTro2.scaffold_18215 I 4 C 0
|
|
393
|
+
s tetNig1.chrUn_random 103512028 111 + 171761319 TAGATAAAAGAACAAACT-----------------A---AGTGAGC---C-CTGTTCAAATGTCTTTGGTTGGGGCGACCGCGGGGTAACAAAAAACCCCC-----ATGT-----GGAATAAAAACACCCTTTTTAAAACCAAGA
|
|
394
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
395
|
+
s danRer4.chrM 3234 107 + 16596 AATAAAAGTGATTAAACT-----------AGTAAAA---GATAAAC---C-TC-------TACCTTCGGTTGGGGCGACCACGGAGTAAAAAACAACCTCC-----AAGC-----GGAACGGGCACAGCC---CTAAAACCAAGA
|
|
396
|
+
i danRer4.chrM C 0 C 0
|
|
397
|
+
|
|
398
|
+
a score=173589.000000
|
|
399
|
+
s mm8.chrM 2299 79 + 16299 CT---------TACAAGTCA---AAGTAAAATCAACATATCT------TATT------GACCCAGATA---TATTTTGATCAACGGACCAAGTTACCCTAGGGATA
|
|
400
|
+
s rn4.chrM 2284 84 + 16300 CGGTAACCGTGTCCGACCCAGTCAAGTAATACTAA--TATCT------TATT------GACCCAATTA---T----TGATCAACGGACCAAGTTACCCTAGGG-TA
|
|
401
|
+
i rn4.chrM C 0 C 0
|
|
402
|
+
s oryCun1.scaffold_116167 4695 76 + 15695 CC--------CAACAAGTCA---AAGCAATTATAA--TCATA------AATT------GACCCAAATA---A--TTTGATCAACGGAACAAGTTACCCTAGGGATA
|
|
403
|
+
i oryCun1.scaffold_116167 C 0 n 0
|
|
404
|
+
s hg18.chrM 2863 76 + 16571 CT--------TCACCAGTCA---AAGCGA-ACTACTATACTC------AATT------GATCCAA-TA---A--CTTGACCAACGGAACAAGTTACCCTAGGGATA
|
|
405
|
+
i hg18.chrM C 0 C 0
|
|
406
|
+
s panTro2.chrM 2280 76 + 16554 CC--------TCACCAGTCA---AAGCGA-ATTACTACATCC------AATT------GATCCAA-TG---A--CTTGACCAACGGAACAAGTTACCCTAGGGATA
|
|
407
|
+
i panTro2.chrM C 0 C 0
|
|
408
|
+
s rheMac2.chr5 34438319 74 - 182086969 CC--------ACACCAGTCT---ACGCGA-GTTAACACAC---------ATT------GGCCCAATTA---A--TTTGATCAATGGAGTAAGTTATCCTATGGATA
|
|
409
|
+
i rheMac2.chr5 C 0 C 0
|
|
410
|
+
s bosTau2.chrM 2659 72 + 16338 CC---------CACAAGTCA---AATCAC----TCTATCGCT------CATT------GATCCAA-AA---A--CTTGATCAACGGAACAAGTTACCCTAGGGATA
|
|
411
|
+
i bosTau2.chrM C 0 C 0
|
|
412
|
+
s canFam2.chrM 2296 74 + 16727 CC---------CACAAGTCA---AAATAC----AACATCACT------TATT------GATCCAA-TA---ATTTTTGATCAACGGAACAAGTTACCCTAGGGATA
|
|
413
|
+
i canFam2.chrM C 0 C 0
|
|
414
|
+
s dasNov1.scaffold_23239 6114 73 - 16977 CC---------AACCGGTCA---AAGCCC--ATAACGAAACC------AATT------GATCCAA--A---A--ATTGACCAACGGAACCAGTTACCCCAGGGATA
|
|
415
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
416
|
+
s loxAfr1.scaffold_36650 5305 72 + 16266 ---------TCTACAAGTCA---AAATTT-ACTAA--TCGCT------TATT------GACCCAA--T---A--CTTGATCAACGGAACAAGTTACCCTAGGGATA
|
|
417
|
+
i loxAfr1.scaffold_36650 I 1 C 0
|
|
418
|
+
s echTel1.scaffold_49882 2559 71 - 7170 ---------CCTACAAGTCG---CAATTA-A--AA--TCACT------TATT------GACCCAA-TT---A--CTTGAGCAACGGACCAAGTTACCCTAGGGATA
|
|
419
|
+
i echTel1.scaffold_49882 I 1561 C 0
|
|
420
|
+
s monDom4.chrUn 117153729 75 + 174229318 ---------CTAACACATCT---AAGTGCAACCTAAGCCAGT------AATT------GACCCAA--A---A--CTTGATCAACGGAACAAGTTACCCCAGGGATA
|
|
421
|
+
i monDom4.chrUn C 0 C 0
|
|
422
|
+
s galGal2.chrM 3588 72 + 16775 ---------CCAACTCCTCA---AAGTACCAACAG--TAACC------A---------GACCCAATAT---A--ATTGAGCAATGGACCAAGCTACCCCAGGGATA
|
|
423
|
+
i galGal2.chrM C 0 C 0
|
|
424
|
+
s xenTro2.scaffold_18215 1469 80 + 3330 ---------ACGACAGTTCT---AAGTAA---CAAAACATTTGACCACTATT------GATCCAGTCC---A--ACTGATCAACGAACCAAGTTACCCTAGGGATA
|
|
425
|
+
i xenTro2.scaffold_18215 C 0 C 0
|
|
426
|
+
s tetNig1.chrUn_random 103512139 79 + 171761319 ---------GCCACCGCTCT---AATGAA---CAGAACATCT------GACCAATCA-GATCCGGCCT---A--GCCGATCAACGAACCGAGTTACCCTAGGGATA
|
|
427
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
428
|
+
s danRer4.chrM 3341 83 + 16596 ---------GAAACATCTCT---AAGCCT---CAGAACACCT------GACCAAAGACGATCCGGCCTATAA--GCCGATCAACGAACCAAGTTACCCTAGGGATA
|
|
429
|
+
i danRer4.chrM C 0 C 0
|
|
430
|
+
|
|
431
|
+
a score=1521193.000000
|
|
432
|
+
s mm8.chrM 2378 161 + 16299 ACAGCGCAATCCTATTTAA-GAGTTCATATCGACAATTAGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCAATGGTGTAGAAGCTATTAATGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
|
|
433
|
+
s rn4.chrM 2368 153 + 16300 ACAGCGCGA-CCTATTTAA-GAGTTCATATCGACAATTAGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCAATGGTGCAGAAGCTATTAATGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTAAGTCCGG-------CAATCCAGGTCGGTT
|
|
434
|
+
i rn4.chrM C 0 C 0
|
|
435
|
+
s oryCun1.scaffold_205008 2 161 - 118789 ACAGCGCAATCCTATTTTA-GAGTCCCTATCGACAATAGCGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCAATGGTGTAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGAAATCCAGGTCGGTT
|
|
436
|
+
i oryCun1.scaffold_205008 n 0 C 0
|
|
437
|
+
s hg18.chrM 2939 160 + 16571 ACAGCGCAATCCTATTCTA-GAGTCCATATCAACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT
|
|
438
|
+
i hg18.chrM C 0 C 0
|
|
439
|
+
s panTro2.chrM 2356 160 + 16554 ACAGCGCAATCCTATTCCA-GAGTCCATATCAACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT
|
|
440
|
+
i panTro2.chrM C 0 C 0
|
|
441
|
+
s rheMac2.chr5 34438393 161 - 182086969 ACAACAAAATCCTATTCTAGGATTCCCTATTGGCAAT-AGGGTTTAC-AACCTCGATGTTGGATCAGGACATCCTAATGGTGTAGCTGCTATTAAGGGTTCATTTATTCAATGATTAA-AGTCCTACCTGATCTGAGTTCAGACCGGAGTAATCCAGGTTGGTT
|
|
442
|
+
i rheMac2.chr5 C 0 C 0
|
|
443
|
+
s bosTau2.chrM 2731 160 + 16338 ACAGCGCAATCCTATTCAA-GAGTCCATATCGACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTGATGGTGCAACCGCTATCAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT
|
|
444
|
+
i bosTau2.chrM C 0 C 0
|
|
445
|
+
s canFam2.chrM 2370 160 + 16727 ACAGCGCAATCCTATTCAA-GAGTCCATATCGACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCAGCTATTAAGGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTT
|
|
446
|
+
i canFam2.chrM C 0 C 0
|
|
447
|
+
s dasNov1.scaffold_23239 6187 160 - 16977 ACAGCGCAATCCTATTCCA-GAGCCCATATCAACAAT-AGGGTTTAC-GACCTCGATGTTGGATCAGGACACCCAAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
|
|
448
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
449
|
+
s loxAfr1.scaffold_36650 5377 160 + 16266 ACAGCGCAATCCTACTCTA-GAGTCCCTATCGACAGC-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
|
|
450
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
451
|
+
s echTel1.scaffold_49882 2630 161 - 7170 ACAGCGCAATCCTATTTAA-GAGTTCATATCGACGAT-AGGGTTTACTGACCTCGATGTTGGATCAGGACACCCAGATGGTGCAACAGCTATCAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
|
|
452
|
+
i echTel1.scaffold_49882 C 0 I 1469
|
|
453
|
+
s monDom4.chrUn 117153804 161 + 174229318 ACAGCGCAATCCTATTTAA-GAGCCCATATCGACAATTAGGGTTTAC-GACCTCGATGTTGGATCAGGACACCCCAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGAAATCCAGGTCGGTT
|
|
454
|
+
i monDom4.chrUn C 0 C 0
|
|
455
|
+
s galGal2.chrM 3660 161 + 16775 ACAGCGCAATCTCCTCCAA-GAGCCCATATCGACAAG-GAGGTTTAC-GACCTCGATGTTGGATCAGGACAACCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAACAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTT
|
|
456
|
+
i galGal2.chrM C 0 C 0
|
|
457
|
+
s xenTro2.scaffold_18215 1549 160 + 3330 ACAGCGCAATCCATTTCGA-AAGTTCCTATCGACAAA-TGGGTTTAC-GACCTCGATGTTGGATCAGGGCATCCCAGTGGTGCAGCCGCTACTAAAGGTTCGTTTGTTCAACGATTAA-AGCCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCAGTT
|
|
458
|
+
i xenTro2.scaffold_18215 C 0 C 0
|
|
459
|
+
s tetNig1.chrUn_random 103512218 160 + 171761319 ACAGCGCAATCCTCTTTTA-GAGCCCATATCGACAAG-AGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAA-AGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCAGTT
|
|
460
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
461
|
+
s danRer4.chrM 3424 161 + 16596 ACAGCGCAATCCTCTCTAA-GAGTCCATATCGACGAG-GGGGTTTAC-GACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAATAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCAGTT
|
|
462
|
+
i danRer4.chrM C 0 C 0
|
|
463
|
+
|
|
464
|
+
a score=51271.000000
|
|
465
|
+
s mm8.chrM 2539 136 + 16299 TCTATCTATTTAC--G-ATTTCTCCC-AGT-ACGAAAGGACAAGAGAAATAGAGCC-ACCTTACAAATAAG-CG--CTCTCAACT----TAATTTATGAATAAAATCTAAAT--AAAA---TAT---ATACG---T-ACACCCTCT---AACCTAGAGA----AGGTT-
|
|
466
|
+
s rn4.chrM 2521 132 + 16300 TCTATCTATTTAC--A-ATTTCTCCC-AGTTACGAAAGGACAAGAGAAATGGAG---ACCAACCAATCCTA-GG--CTTCCAACC-----AATTTAG----AAAAACTTAAT--AAAG---TAT---ATATG---T-ACAATAAAT---AACCT-TAGACCC-AAGTT-
|
|
467
|
+
i rn4.chrM C 0 C 0
|
|
468
|
+
s oryCun1.scaffold_205008 163 136 - 118789 TCTATCTATTAAG--T-ATTTCTCCC-AGT-ACGAAAGGACAAGAGAAATAGAGCCTACTGCACCA--CAG-AG--CTCTAAGTC----CAAAAGATGAA-ATAATCTTAAT--CTAG---TAC---ACTTA---C-CCAACATAG---AGCCC-TAGACCA-GAGCT-
|
|
469
|
+
i oryCun1.scaffold_205008 C 0 C 0
|
|
470
|
+
s hg18.chrM 3099 129 + 16571 TCTATCTACTTCA--A-ATTCCTCCC-TGT-ACGAAAGGACAAGAGAAATAAGGCCTACTTCACAA---AG-CG-CCTTCCCCCG----TAAATGAT----ATCATCTCAAC--TTAGTATTAT---ACCCA---C-ACCCAC---------CC-AAGAACA-GGGT--
|
|
471
|
+
i hg18.chrM C 0 I 89
|
|
472
|
+
s panTro2.chrM 2516 117 + 16554 TCTATCTGTTCTA--A-ATTTCTCCC-TGT-ACGAAAGGACAAGAGAAATGAGGCCTACTTCACAA---AG-CG-CCTTCCCCAA----TAAATGAT----ATTATCTCAAT--TTAGCGCCAT---GCCAA---C-ACCCACT-------------------------
|
|
473
|
+
i panTro2.chrM C 0 I 92
|
|
474
|
+
s rheMac2.chr5 34438554 132 - 182086969 TCTATATATTTAA--T-ATTTCTCCT-AGT-ATGAAAGGACAAGAGAAATAGGGCCCACTTCATAA---AG-TGCCCTTGCCGCA----TAAATGAT----GCTATCTCTGT--CTAA---CAA---ACCAT---C-ACACACCCT---A-CCC-AGAAACA-GGGT--
|
|
475
|
+
i rheMac2.chr5 C 0 I 2
|
|
476
|
+
s bosTau2.chrM 2891 130 + 16338 TCTATCTATTACG--T-ATTTCTCCC-AGT-ACGAAAGGACAAGAGAAATAAGGCCAACTTTAAAT-CAAG-CG--CCTTAAGAC-----AACCAATGAT-AACATCTCAA---CTGA---CAA---CACAA---A-ACCCT--------GCCC-TAGAACA-GGGCT-
|
|
477
|
+
i bosTau2.chrM C 0 I 2
|
|
478
|
+
s canFam2.chrM 2530 138 + 16727 TCTATCTATTATA--CAACCTCCCCC-AGT-ACGAAAGGACAAGGGATGTAAGGCCTACCTCACAG--AGG-CG--CCTTAAAAC----TAATAGATGAA-GTCAACTCAAT--CTAA---CCA---GTTTA---T-CTCCTCATA---AGCCC-GAGAAAAGGGGCT-
|
|
479
|
+
i canFam2.chrM C 0 I 2
|
|
480
|
+
s dasNov1.scaffold_23239 6347 137 - 16977 TCTATCTATAACC--A-ATTTCTCCC-AGT-ACGAAAGGACAAGAGAAATAAGGCCAACTTTACAA-GAGG-CG-CCTTAAATCA----AAATAGATGAA-ATAATCTCAAC--CTAA---AAC---AT-TA---C-ATAAACATT---AGTCC-TAAGCCA-GGACC-
|
|
481
|
+
i dasNov1.scaffold_23239 C 0 I 2
|
|
482
|
+
s loxAfr1.scaffold_36650 5537 134 + 16266 TCTATCTATAGTT--T-ATTTATTCC-AGT-ACGAAAGGACAGAAAAAATGAGGCCAATCTTACCA---AGACG--CCTCCAGCT----AAATTTATGAA-TAAATCTCAAT--CTAG-----------ATAAGCT-AAACCACCC---AATCC-AAGAACA-GGATT-
|
|
483
|
+
i loxAfr1.scaffold_36650 C 0 I 1
|
|
484
|
+
s echTel1.scaffold_181343 1939 126 + 18297 TCTATCTATTTTA--T-ATCTCCTCCTAGT-ACGAAGGACCAGAGAGA---TAGCCACTTTCAACC---AG-CG--CCTTAA--C----AAACCAATGAT-ATAATCTTAAT--TTAC-----------CTA---T-ATCCATTTC---TGCTC-TAGATAA-GAGCT-
|
|
485
|
+
i echTel1.scaffold_181343 M 388 I 1
|
|
486
|
+
s monDom4.chrUn 117153965 135 + 174229318 TCTATCTATATAA--TAATTTCTCCT-AGT-ACGAAAGGACAAGAGAATTAAGGCCAACATTACAA--ACA-AG--CCTTACAAC----TAACTAATGAT-CTTATCTCAAT--TAGT---TAA---TGCAA---G-ATTTTATT-----ACTC-TAGAGAA-GAGTT-
|
|
487
|
+
i monDom4.chrUn C 0 C 0
|
|
488
|
+
s galGal2.chrM 3821 142 + 16775 TCTATCTATGGAC----ACTCCTCCT-AGT-ACGAAAGGACCGGAGAAGTGGGGTCAATACCACTG---AG-CA--CACCCCAACCTTCTAAGCAATGAA-TACAACTCAACTGCCAA---GAA---CCCCT---C-CCCCACACCCGAACTCC-TAGAAAA-GGAT--
|
|
489
|
+
i galGal2.chrM C 0 I 3
|
|
490
|
+
s xenTro2.scaffold_18215 1709 136 + 3330 TCTATCTATGCAG--T-ATTTTCTCT-AGT-ACGAAAGGACCGAGAAAATGAGGTCTATGTCACAA--ACA-AG--CCTCCTCCC----TTATCAATGAA-AACAACTTAAT--TGAA---TAA---AGGAC---T-AACAACTTC---AGCCC-AAGATAA-GGGCT-
|
|
491
|
+
i xenTro2.scaffold_18215 C 0 M 690
|
|
492
|
+
s tetNig1.chrUn_random 103512378 139 + 171761319 TCTATCTATGAAG-TG-CCCTTTTCT-AGT-ACGAAAGGACCGAAAAGGAGAGACCCCTGCCAAAA--GCA-CG--TCCCCCTCT----CACCCGTTGTC-TCCAACTAAAA--CAGA---CAA---GAGAG---CACACAACAAC---AGCCA-AAGAACA-TGACAT
|
|
493
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
494
|
+
s danRer4.chrM 3585 141 + 16596 TCTATCTGTAAAGCTA-TTTTTTCCT-AGT-ACGAAAGGATCGGAAAAAGGGGGCCCATACTAAAA--GCA-CG--CCCCACCCT----AAATTTATGAA-TAAAGATAAAA--AAAA---TAAAAGGAGAG---C-TAAAACCTC---TTCCC-GA-AATA-AGGGTT
|
|
495
|
+
i danRer4.chrM C 0 C 0
|
|
496
|
+
|
|
497
|
+
a score=312226.000000
|
|
498
|
+
s mm8.chrM 2675 76 + 16299 A-ttagggtggcagagccaggaaattgcgtaagacttaaaaccttgttcccagaggttcaaatcctctccctaa-ta--G
|
|
499
|
+
s rn4.chrM 2653 76 + 16300 A-ttagggtggcagagccaagtaattgcgtaagacttaaaaccttgttcccagaggttcaaatcctctccctaa-ta--G
|
|
500
|
+
i rn4.chrM C 0 C 0
|
|
501
|
+
s oryCun1.scaffold_205008 299 79 - 118789 Agttaaggtggcagagcccggtaattgcgtaaaacttaaaactttataaccagaggttcaactcctctccttaa-caATA
|
|
502
|
+
i oryCun1.scaffold_205008 C 0 C 0
|
|
503
|
+
s rheMac2.chr5 34438688 76 - 182086969 -gttaagatggaggagcttggtaattgcataaaacttaaaattttataataagaggttcaactcctcttcttaa-ca--A
|
|
504
|
+
i rheMac2.chr5 I 2 I 2
|
|
505
|
+
s bosTau2.chrM 3023 76 + 16338 -gttaaggtggcagagcccggtaattgcataaaacttaaacttttatatccagagattcaaatcctctccttaa-ca--A
|
|
506
|
+
i bosTau2.chrM I 2 I 2
|
|
507
|
+
s canFam2.chrM 2670 75 + 16727 -gttagggt-gcagggcccggtaactgcgtaaaacttaaacctttactatcagaggttcaattcctctccctaa-ca--A
|
|
508
|
+
i canFam2.chrM I 2 I 2
|
|
509
|
+
s dasNov1.scaffold_23239 6486 76 - 16977 -gttaagatggcagagacaggtaattgcataagacttaaacctttattaccagaggttcaaatcctcttcttaa-ca--t
|
|
510
|
+
i dasNov1.scaffold_23239 I 2 I 3
|
|
511
|
+
s loxAfr1.scaffold_36650 5672 76 + 16266 -gttaagatagcaaaaactggtcactgcataaaacttaagcttttactcacggaggttcaactcctcttcttaa-ca--A
|
|
512
|
+
i loxAfr1.scaffold_36650 I 1 C 0
|
|
513
|
+
s echTel1.scaffold_181343 2066 76 + 18297 -Attaagatggcagagcccggtaattgcacaagacttaaacccttgccgtcagaggttcaatccctcttcttaa-ta--A
|
|
514
|
+
i echTel1.scaffold_181343 I 1 C 0
|
|
515
|
+
s monDom4.chrUn 117154100 75 + 174229318 -Attaaggtggcagag-caggtaattgcataaaacttaagcctttactatcagaggttcaacccctctccttaa-ta--T
|
|
516
|
+
i monDom4.chrUn C 0 I 1
|
|
517
|
+
s galGal2.chrM 3966 75 + 16775 -GCTAGCGTGGCAGAGCTCGGCAAATGCAAAAGGCTTAAGCCCTT-TATCCAGAGGTTCAAATCCTCTCCCTAG-CT--A
|
|
518
|
+
i galGal2.chrM I 3 I 30
|
|
519
|
+
s tetNig1.chrUn_random 103512517 75 + 171761319 -gttagggtggcagagcccggtaaatgcaaaagacctaagcccttt-atacagaggttcaactcctctccttaa-cT--A
|
|
520
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
521
|
+
s danRer4.chrM 3726 77 + 16596 -GCTGGGATGGCAGAGCTCGGTAATTGCAAAAGGCCTAAGCCCTTTCACCCAAAGGTTCAAATCCTTTTCCCAGTTT--A
|
|
522
|
+
i danRer4.chrM C 0 C 0
|
|
523
|
+
e xenTro2.scaffold_18215 1845 690 + 3330 M
|
|
524
|
+
e panTro2.chrM 2633 92 + 16554 I
|
|
525
|
+
e hg18.chrM 3228 89 + 16571 I
|
|
526
|
+
|
|
527
|
+
a score=353365.000000
|
|
528
|
+
s mm8.chrM 2751 92 + 16299 ------------------TGTTCTTTATTAATATCCTAACACTCCTCGTCCCCATTCTAATC---GCCATAGCCTTCCTAACATTAGTAGAACGCAAAATCTTAGGGTACATA
|
|
529
|
+
s galGal2.chrM 4071 92 + 16775 ------------------ACCTTCTAATCATAACCTTATCCTATATTCTCCCCATCCTAATC---GCCGTGGCCTTCTTAACACTTGTAGAACGAAAAATCCTAAGCTACATG
|
|
530
|
+
i galGal2.chrM I 30 C 0
|
|
531
|
+
s monDom4.chrUn 117154176 92 + 174229318 ------------------TGTTCCTAATCAATCTACTAATCTATATTATTCCTATTCTACTA---GCAGTAGCTTTTTTAACATTAATCGAACGAAAAGTCCTAGGTTATATA
|
|
532
|
+
i monDom4.chrUn I 1 C 0
|
|
533
|
+
s echTel1.scaffold_181343 2142 92 + 18297 ------------------TGTTTATTATTAATCTCTTATCACTGATTGTTCCTATCCTCCTA---GCAGTAGCTTTCCTTACACTTCTTGAACGAAAAGTACTAGGATATATG
|
|
534
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
535
|
+
s loxAfr1.scaffold_36650 5748 92 + 16266 ------------------TGTTCTTAATCAATGTCCTAACAGTAACCTTACCTATCCTCCTA---GCAGTAGCCTTCCTTACCTTAGTTGAACGAAAGGCCTTAGGCTATATA
|
|
536
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
537
|
+
s dasNov1.scaffold_23239 6565 92 - 16977 ------------------TGTACTTAATCAATGTTCTATCTCTAATTATCCCAATTCTCCTA---GCAGTAGCCTTCCTAACGTTACTAGAACGAAAAATTCTAGGCTATATA
|
|
538
|
+
i dasNov1.scaffold_23239 I 3 C 0
|
|
539
|
+
s canFam2.chrM 2747 92 + 16727 ------------------TGTTCTTTATCAACATTATCTCTCTTATTATCCCAATCCTTCTT---GCCGTAGCCTTCCTCACCCTCGTTGAACGAAAAGTCTTAGGCTATATA
|
|
540
|
+
i canFam2.chrM I 2 C 0
|
|
541
|
+
s bosTau2.chrM 3101 92 + 16338 ------------------TGTTCATAATTAACATCTTAATACTAATTATTCCCATCCTATTG---GCCGTAGCATTCCTTACGTTAGTGGAACGAAAAGTTCTAGGCTATATA
|
|
542
|
+
i bosTau2.chrM I 2 C 0
|
|
543
|
+
s rheMac2.chr5 34438766 92 - 182086969 ------------------TGCCTTTAATTAACCTTCTCCTACTCATTATCCCCACTCTTATC---GCTATAGCGTTCCTTACACTCATCAAACGAAAAATCTTAGGCTATACA
|
|
544
|
+
i rheMac2.chr5 I 2 C 0
|
|
545
|
+
s hg18.chrM 3317 83 + 16571 ---------------------------CCAACCTCCTACTCCTCATTGTACCCATTCTAATC---GCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATA
|
|
546
|
+
i hg18.chrM I 89 C 0
|
|
547
|
+
s panTro2.chrM 2725 92 + 16554 ------------------CACCCATGACCAACCTCCTACTCCTCATTGTACCCATCCTAATC---GCAATAGCATTCCTAATGCTAACCGAACGAAAAATTCTAGGCTACATA
|
|
548
|
+
i panTro2.chrM I 92 C 0
|
|
549
|
+
s oryCun1.scaffold_205008 378 92 - 118789 ------------------TGTTCCTAATTAATACACT---CCTTTTAATCCTACCTGTACTTTTAGCCATAGCATTCCTCACCTTAGTCGAACGAAAAATCTTAGGGTACATA
|
|
550
|
+
i oryCun1.scaffold_205008 C 0 C 0
|
|
551
|
+
s rn4.chrM 2729 92 + 16300 ------------------TGTACTTTATTAATATCCTAACACTCCTAATCCCAATCTTAATT---GCCATAGGCCTTCTCACCCTAGTAGAACGGAAAATCCTAGGCTACATA
|
|
552
|
+
i rn4.chrM C 0 C 0
|
|
553
|
+
s tetNig1.chrUn_random 103512592 110 + 171761319 TGATTACAACCCTCATCACACACATCCTAAACCCTCTTGCCTTTATTGTCCCCGTCCTACTA---GCCGTCGCTTTTCTGACACTCCTAGAACGAAAAGTTCTAGGATACATA
|
|
554
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
555
|
+
s danRer4.chrM 3803 110 + 16596 TGCTAGACATCTTAACAAGCCACTTAATTAACCCCCTAGCCTACGCCGTACCAGTATTAATT---GCAGTAGCCTTCCTTACCTTAGTTGAACGAAAAGTGTTAGGCTATATA
|
|
556
|
+
i danRer4.chrM C 0 C 0
|
|
557
|
+
e xenTro2.scaffold_18215 1845 690 + 3330 M
|
|
558
|
+
|
|
559
|
+
a score=1741996.000000
|
|
560
|
+
s mm8.chrM 2843 346 + 16299 CAACTACGAAAAGGCCCTAACATTGTTGGTCCATACGGCATTTTACAACCATTTGCAGACGCCATAAAATTATTTATAAAAGAACCAATACGCCCTTTAACAAC-CTCTATATCCTTATTTATTATTGCACCTACCCTATCACTCACACTAGCATTAAGTCTATGAGTTCCCCTACCAAT---ACCACACCCA---TTAATTAATTTAAACCTAGGGATTTTATTTATTTTAGCAACATCTAGCCTATCAGTTTACTCCATTCTATGATCAGGATGAGCCTCAAACTCCAAATACTCACTATTCGGAGCTTTACGAGCCGTAGCCCAAACAATTTCATATGAAGTAACCATAG
|
|
561
|
+
s rn4.chrM 2821 346 + 16300 CAATTACGCAAAGGCCCCAACAACGAAGGCCCATATGGTAAACTACAACCATTTGCAGATGCCATAAAACTATTCATAAAAGAACCCATACGCCCTCTAACCAC-CTCAATATCACTATTTATTATCGCCCCAACCCTCTCCCTTACACTAGCTCTAAGCCTATGAATTCCCTTACCAAT---ACCCCACCCC---CTTATCAACCTCAACCTAGGCATACCATTTATTCTAGCCACATCCAGCCTTTCGGTCTACTCCATTCTATGATCGGGATGAGCCTCAAATTCAAAATACTCCCTATTCGGAGCCCTACGAGCCGTTGCCCAAACCATCTCTTACGAAGTCACAATAG
|
|
562
|
+
i rn4.chrM C 0 C 0
|
|
563
|
+
s oryCun1.scaffold_205008 470 347 - 118789 CAACTACGTAAAGGCCCAAACATTGTAGGACCCTATGGCCTCCTCCAACCAATCGCAGACGCTATTAAGCTATTCACTAAAGAACCCCTACGACCCCTAACATCGCTCTCCGCTACTCTTTATTATCGCCCCAACCCTAGCTCTAACTCTCGCACTATCAATGTGACTTCCTATCCCCAT---ACCTTACCCA---CTAGTCAACCTAAATATAGGCATTCTATTCATCCTAGCAACCTCCAGCTTAGCCGTTTACTCAATCCTATGATCAGGATGAGCATCCAACTCAAAATACGCCCTATTTGGTGCTCTCCGAGCAGTCGCACAAACCATTTCCTACGAAGTCACACTTG
|
|
564
|
+
i oryCun1.scaffold_205008 C 0 C 0
|
|
565
|
+
s panTro2.chrM 2817 346 + 16554 CAACTACGCAAAGGTCCCAACATTGTAGGTCCTTACGGGCTATTACAGCCCTTCGCTGACGCCATAAAACTCTTCACTAAAGAACCCTTAAAACCCTCCACTTC-AACCATTACCCTCTACATCACCGCCCCAACCCTAGCCCTCACCATTGCCCTCTTACTATGAACCCCCCTCCCCAT---ACCCAACCCC---CTAGTCAATCTTAACTTAGGCCTCCTATTTATTCTAGCCACCTCCAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCGAACTACGCCTTAATCGGTGCACTACGAGCAGTAGCCCAAACAATCTCATACGAAGTCACTCTAG
|
|
566
|
+
i panTro2.chrM C 0 C 0
|
|
567
|
+
s hg18.chrM 3400 346 + 16571 CAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCCCCTAAAACCCGCCACATC-TACCATCACCCTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTCTACTATGAACCCCCCTCCCCAT---ACCCAACCCC---CTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCTCATATGAAGTCACCCTAG
|
|
568
|
+
i hg18.chrM C 0 C 0
|
|
569
|
+
s rheMac2.chr5 34438858 346 - 182086969 CAACTATGCAGAAGACACAGAATTGTCGGTCTCGATGGGCTGCTTCAACCATTCGCTGATGCAATAAAACTTTTCACCAAAGAACCCTTACGGCCTTCAAAATC-TGCTATTACCCTTCACATTATTGCTTCAACACTAGCCTTTTCCATCACTCTCCTCTTATGAACTCCCCTCCCTAT---CCCAGACCCT---CTAATTAATTTTAACATAAGCCTCCTATTTATACTAGCCACATCAAGCCCAGCCGTCTCCTCTATTCTATGATCAGGATGAGCATCTAATTCAAATTATGCACTAATCAGCACATTACGAGCTGTGGCCCAAACAATTTCATATGAGGTCACCTTGG
|
|
570
|
+
i rheMac2.chr5 C 0 C 0
|
|
571
|
+
s bosTau2.chrM 3193 346 + 16338 CAACTCCGAAAAGGTCCAAATGTCGTAGGTCCATATGGCCTACTTCAACCCATCGCCGATGCAATCAAACTTTTCATTAAAGAACCACTACGACCCGCTACATC-TTCAGCCTCAATATTTATCCTAGCACCTATCATAGCTTTAGGCCTAGCCTTAACCATGTGAATTCCCCTACCAAT---ACCCTATCCT---CTTATCAACATAAACCTAGGAGTCCTATTTATACTAGCCATATCAAGCCTAGCCGTATACTCCATTCTCTGATCAGGCTGAGCTTCCAACTCAAAATACGCACTAATCGGAGCCCTACGAGCAGTAGCACAAACAATCTCATACGAAGTAACGCTAG
|
|
572
|
+
i bosTau2.chrM C 0 C 0
|
|
573
|
+
s canFam2.chrM 2839 346 + 16727 CAACTTCGAAAAGGACCTAATATTGTAGGCCCCTACGGCCTCCTTCAACCAATCGCAGACGCAGTAAAACTCTTCACAAAAGAACCTCTACGACCACTTACATC-CTCTATATCAATATTCATCCTAGCCCCCATTCTAGCTCTATCACTAGCCCTAACTATGTGAATTCCCCTCCCAAT---ACCCTACCCA---CTCATTAATATAAACTTGGGAGTCCTATTCATACTAGCAATATCAAGCCTCGCCGTGTACTCCATCCTCTGATCAGGATGAGCCTCAAACTCCAAATACGCCCTAATCGGAGCCCTTCGAGCAGTAGCTCAAACAATCTCATATGAAGTAACGCTAG
|
|
574
|
+
i canFam2.chrM C 0 C 0
|
|
575
|
+
s dasNov1.scaffold_23239 6657 346 - 16977 CAGTTACGTAAAGGCCCAAACATCGTAGGACCATACGGCCTACTACAACCAATCGCAGACGCCATTAAACTATTCATCAAAGAACCACTACGACCAGCCACATC-ATCAAAACTCATATTTACCTTAGCACCCACACTAGCACTAACTCTCGCACTTTCACTTTGAATCCCCATCCCAAT---ACCTTACCCA---TTGGTTAACTTAAATTTAGGGGTACTATTCATTTTAGCCATATCAAGCCTAGCTGTCTATTCAATCTTATGGTCAGGATGAGCATCAAACTCCAAATACGCCCTCATCGGAGCCCTTCGAGCAGTAGCACAAACAATTTCCTACGAAGTAACCCTGG
|
|
576
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
577
|
+
s loxAfr1.scaffold_36650 5840 346 + 16266 CAACTTCGTAAAGGTCCCAATGTAGTAGGACCTTACGGTCTTCTCCAACCTATTGCAGATGCAATCAAGCTATTTACTAAAGAACCCATCTACCCACAAACCTC-ATCAAAATTCCTATTTACCGTCGCCCCAATTCTAGCCCTAACCTTAGCCCTAACTGTATGAGCTCCTCTTCCAAT---ACCATATCCT---CTAATTAACTTAAATCTGAGCCTACTATTCATTCTCGCAATATCAAGTCTGATAGTTTATTCCATCCTATGATCAGGCTGAGCATCAAACTCAAAATATGCCCTCATAGGAGCCCTGCGAGCAGTAGCCCAAACCATCTCCTATGAAGTCTCTATAA
|
|
578
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
579
|
+
s echTel1.scaffold_181343 2234 346 + 18297 CAACTTCGTAAAGGCCCTAACGTTGTTGGCCCATATGGGCTCTTTCAACCATTTGCTGACGCAATCAAACTATTTACTAAAGAACCGCTACGCCCAATGACTTC-ATCTATAACTATATTTTTACTTGCCCCAATCCTAGCGCTATCCCTAGCTCTTACACTGTGGGTTCCTCTGCCAAT---ACCTCATTCC---CTTGTTAATCTTAACCTAAGCCTCTTATTCATCTTAGCCATATCTAGCCTAGCTGTCTACTCTATTCTATGATCAGGATGAGCATCTAACTCCAACTATGCTCTAATTGGCGCACTCCGAGCAGTCGCCCAAACAATCTCTTATGAAGTCTCTCTAG
|
|
580
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
581
|
+
s monDom4.chrUn 117154268 346 + 174229318 CAACTCCGAAAAGGCCCAAACGTTATTGGACCATACGGCATCCTACAGCCATTCGCAGACGCTGTAAAATTATTCACAAAAGAACCCCTCCGACCTCTAACTTC-ATCAATCTCAATATTTATTATTGCACCTATTTTAGCCCTAACCTTAGCTCTAACAATCTGAACCCCTCTACCTAT---ACCCCACACC---CTAATTGACTTAAACCTAGGACTTTTATTTATTTTATCCTTATCAGGACTATCAGTTTACTCAATTCTATGATCAGGATGAGCATCAAATTCTAAATATGCACTCATTGGAGCCTTACGAGCCGTAGCTCAAACAATTTCATACGAAGTCACATTAG
|
|
582
|
+
i monDom4.chrUn C 0 C 0
|
|
583
|
+
s galGal2.chrM 4163 346 + 16775 CAGGCCCGAAAGGGCCCAAACATTGTGGGCCCTTTTGGTCTACTCCAACCCGTTGCAGACGGGGTAAAACTATTCATTAAAGAGCCAATCCGACCATCTACCTC-CTCCCCCTTCCTCTTCATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTTGAGTCCCCCTCCCACT---ACCATTCCCC---CTTGCAGACCTCAACCTAGGACTACTATTTCTCCTAGCCATATCAAGCCTAACTGTCTACTCTCTACTCTGATCCGGATGAGCATCAAACTCCAAGTATGCCCTAATCGGAGCCCTTCGAGCCGTCGCACAAACAATCTCATACGAAGTCACCCTAG
|
|
584
|
+
i galGal2.chrM C 0 C 0
|
|
585
|
+
s xenTro2.scaffold_8452 11274 352 + 23823 CAAGTGCGCGTGGGCCCGAACCGCGTCGGCCCGCTGGGCCTGCTGCAACCGCTTGCCGATGGCCTGAAGCTCCTGACCAAGGAAATCATCACACCAACGGCGGC-CAGCAAGGGCCTGTTCTTCCTGGGGCCGGTGATGGCCATCATGCCGGCCCTGGCCGCCTGGGCGGCCATCCCCTTCGGCCCCGACGTCGTGCTGGCGAACGTGAATGCCGGGCTGCTGCTCATCATTGCCATCGCCTCGATCGAGGTCTATGGCGTCATCATCGCGGGCTGGGCGTCCAACTCCAAGTACGCCTTCCTGGGCGCACTGCGTGCCTCGGCGCAGATGGTGAGCTATGAAATCGCCATGG
|
|
586
|
+
i xenTro2.scaffold_8452 n 0 I 124
|
|
587
|
+
s tetNig1.chrUn_random 103512702 346 + 171761319 CAACTACGAAAAGGTCCAAACATCGTAGGCCCTTATGGCCTTCTCCAACCAATTGCAGACGGGGTAAAACTATTTATTAAAGAGCCCGTACGACCCTCAACCTC-CTCCCCAATCCTATTCATCCTCACCCCCATACTAGCCCTCACATTAGCCATAACACTATGAGCCCCCCTACCCCT---TCCATACCCA---GTCCTAGACCTAAACCTAGCCATCCTTTTCATTCTCGCCCTCTCTAGTCTCGCAGTGTATTCAATCCTCGGTTCCGGTTGAGCCTCAAACTCAAAATATGCCTTAGTAGGAGCCCTACGAGCCGTCGCACAAACCATCTCCTATGAAGTAAGCCTAG
|
|
588
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
589
|
+
s danRer4.chrM 3913 346 + 16596 CAACTCCGAAAAGGACCAAATGTAATAGGCCCCCGAGGACTGTTACAATCAGTAGCTGATGGCGTGAAACTTTTTATTAAAGAACCCATTCGACCATCTATGGC-TTCTCCAATTTTATTTTTAACAGCTCCAGTTCTTGCACTAATCCTAGCAATAATGCTATGGGCACCCATACCCAT---GCCCTATCCA---GTACTCGACCTAAATCTTGGAATTTTATTTATTATAGCCATCTCAAGCCTAGCAGTATACTCAATCCTGGGATCAGGTTGAGCATCAAACTCAAAATACGCATTAATTGGGGCCTTACGAGCTGTAGCGCAAACAATTTCATATGAAGTTAGCCTAG
|
|
590
|
+
i danRer4.chrM C 0 C 0
|
|
591
|
+
|
|
592
|
+
a score=274539.000000
|
|
593
|
+
s mm8.chrM 3189 85 + 16299 CTATTATCCTTTTATCAGTTCTATTAATAAATGGATCCTACTCTCTACAAACACTTATTACAACCCAAGAACACATATGATTACT
|
|
594
|
+
s galGal2.chrM 4509 85 + 16775 CCATCATCCTGTTATCCACAATCATACTGAGCGGCAATTACACCTTAAGCACCCTGGCCATCACCCAAGAGCCCATCTACCTCAT
|
|
595
|
+
i galGal2.chrM C 0 C 0
|
|
596
|
+
s monDom4.chrUn 117154614 85 + 174229318 CAATTATTCTGCTTTCAATTATACTAATTAATGGCTCCTTTACCCTAAAAAATTTAATAATTACCCAAGAAAATATATGATTAAT
|
|
597
|
+
i monDom4.chrUn C 0 C 0
|
|
598
|
+
s echTel1.scaffold_181343 2580 85 + 18297 CTATTATTCTGCTATCAGTAATATTATTTAATGGTTCATTCTCTTTGTCCTCCCTCACTATTACTCAAGAACATTTATGACTGCT
|
|
599
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
600
|
+
s loxAfr1.scaffold_36650 6186 85 + 16266 CAACTATCACCTTATCAATAGTACTAATAAATGGGTCCTTCACACTAACCGCCTTCGCTATAACACAAGAACATCTATGACTAAT
|
|
601
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
602
|
+
s dasNov1.scaffold_23239 7003 85 - 16977 CCATCATCTTACTATCAATCATAATAACAAATGGCTCATTCACCCTATCTACCCTAACAACAACACAAGAACACATATGACTAAT
|
|
603
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
604
|
+
s canFam2.chrM 3185 85 + 16727 CAATTATTCTTCTATCAGTCCTCCTAATAAACGGGTCATTTACACTATCCACGCTAATTATTACCCAAGAACATATATGATTAAT
|
|
605
|
+
i canFam2.chrM C 0 C 0
|
|
606
|
+
s bosTau2.chrM 3539 85 + 16338 CAATTATCCTGTTATCAGTACTCCTAATAAGTGGGTCCTTTACCCTCTCCACATTAATTACTACACAAGAACAAATATGGTTAAT
|
|
607
|
+
i bosTau2.chrM C 0 C 0
|
|
608
|
+
s rheMac2.chr5 34439204 85 - 182086969 CCATTATCCTGCTATCAGTTCTACTGATAAGCCGCTCGTTTAACTTATACAAACTCTTCACCATGCAAGAATTCCTCTGACTGCT
|
|
609
|
+
i rheMac2.chr5 C 0 C 0
|
|
610
|
+
s hg18.chrM 3746 85 + 16571 CCATCATTCTACTATCAACATTACTAATAAGTGGCTCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGATTACT
|
|
611
|
+
i hg18.chrM C 0 C 0
|
|
612
|
+
s panTro2.chrM 3163 85 + 16554 CCATTATCCTACTGTCAACGCTACTAATAAGTGGCTCCTTCAATCTCTCTACCCTTGTCACAACACAAGAGCACCTCTGACTAAT
|
|
613
|
+
i panTro2.chrM C 0 C 0
|
|
614
|
+
s oryCun1.scaffold_205008 817 85 - 118789 CAATTATCCTCCTATGCATCCTCCTAATAAATGGCTCATTTACATTATCATCCCTAATCACAACACAAGAATATATATGAATCCT
|
|
615
|
+
i oryCun1.scaffold_205008 C 0 C 0
|
|
616
|
+
s rn4.chrM 3167 85 + 16300 CCTTATACCTCTTATCCGTCCTCCTAATAAGCGGCTCCTTCTCCCTACAAATACTTATCACTACACAAGAACATATCTGACTATT
|
|
617
|
+
i rn4.chrM C 0 C 0
|
|
618
|
+
s tetNig1.chrUn_random 103513048 85 + 171761319 GCCTAATCCTACTCTCCCTAATTATCTTCACTGGGGGCTTCACACTACAAACCTTCAACACCGCCCAAGAAAGTATTTGACTTAT
|
|
619
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
620
|
+
s danRer4.chrM 4259 85 + 16596 GACTTATTCTATTATCTGCCGTTATTTTTTCTGGGGGATACACCCTACAAACATTTAATACAACTCAGGAAGACACATGACTTCT
|
|
621
|
+
i danRer4.chrM C 0 C 0
|
|
622
|
+
e xenTro2.scaffold_8452 11626 124 + 23823 I
|
|
623
|
+
|
|
624
|
+
a score=377866.000000
|
|
625
|
+
s mm8.chrM 3274 64 + 16299 TCTGCCAGCCTGACCCATAGCCATAATATGATTTATCTCAACCCTAGCAGAAACAAACCGGGCC
|
|
626
|
+
s rn4.chrM 3252 64 + 16300 AATCCCCGCCTGACCAATAGCCATAATATGATACATTTCAACCCTCGCAGAAACAAATCGAGCT
|
|
627
|
+
i rn4.chrM C 0 C 0
|
|
628
|
+
s oryCun1.scaffold_205008 902 64 - 118789 ACTACCAGCATGACCACTTGCCATAATATGATTTATCTCAACCCTAGCAGAAACCAACCGGGCT
|
|
629
|
+
i oryCun1.scaffold_205008 C 0 I 2359
|
|
630
|
+
s panTro2.chrM 3248 64 + 16554 CCTGCCAACATGACCCCTGGCCATAATATGATTTATCTCTACACTAGCAGAGACCAACCGAACT
|
|
631
|
+
i panTro2.chrM C 0 C 0
|
|
632
|
+
s hg18.chrM 3831 64 + 16571 CCTGCCATCATGACCCTTGGCCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAACC
|
|
633
|
+
i hg18.chrM C 0 C 0
|
|
634
|
+
s rheMac2.chr5 34439289 63 - 182086969 CCTACCATCATGGCCC-TAGCCATAACATGATTCATCTCCACACTAGCAGAAACTAACCGAGCC
|
|
635
|
+
i rheMac2.chr5 C 0 C 0
|
|
636
|
+
s bosTau2.chrM 3624 64 + 16338 CCTCCCAGCATGGCCTCTAGCAATAATATGATTTATCTCAACACTAGCAGAAACAAACCGAGCT
|
|
637
|
+
i bosTau2.chrM C 0 C 0
|
|
638
|
+
s canFam2.chrM 3270 64 + 16727 CTTTCCGGCCTGACCCCTAGCCATGATATGATTCATCTCTACCCTAGCAGAAACTAATCGAGCC
|
|
639
|
+
i canFam2.chrM C 0 C 0
|
|
640
|
+
s dasNov1.scaffold_23239 7088 64 - 16977 CTTTCCCCTCTGGCCACTAGCAATAATATGATTTATCTCCACACTAGCAGAAACCAATCGCGCC
|
|
641
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
642
|
+
s loxAfr1.scaffold_36650 6271 64 + 16266 CCTTCCTATATGACCCCTGATAATAATATGATTCACATCAACCTTAGCAGAAACTAACCGAGCC
|
|
643
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
644
|
+
s echTel1.scaffold_181343 2665 64 + 18297 AGTCCCCTCATGACCCCTAGCAATAATATGATTCATCTCAACACTAGCAGAAACTAACCGGGCC
|
|
645
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
646
|
+
s monDom4.chrUn 117154699 64 + 174229318 TATAACCGCATGACCTCTAACTATAATATGGTATATTTCTACATTAGCCGAGACAAACCGAGCT
|
|
647
|
+
i monDom4.chrUn C 0 C 0
|
|
648
|
+
s galGal2.chrM 4594 64 + 16775 TTTTTCCGCATGACCCCTCGCAATAATATGATACATCTCTACCCTTGCTGAAACCAACCGCGCC
|
|
649
|
+
i galGal2.chrM C 0 C 0
|
|
650
|
+
s xenTro2.scaffold_8452 11750 64 + 23823 GCTGCCGCTGCTGCCCATCTTCGTGGTCTACCTGATTTCCAGCGTGGCCGAAACCAACCGCCAC
|
|
651
|
+
i xenTro2.scaffold_8452 I 124 C 0
|
|
652
|
+
s tetNig1.chrUn_random 103513133 64 + 171761319 CATCCCAACCTGACCCCTTGCCGCAATATGATACATCTCCACCCTAGCAGAAACCAACCGAGCC
|
|
653
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
654
|
+
s danRer4.chrM 4344 64 + 16596 ACTTCCACTATGACCATTAGCCATTATATGATTTATCTCAACGCTGGCAGAAACAAACCGAGCA
|
|
655
|
+
i danRer4.chrM C 0 C 0
|
|
656
|
+
|
|
657
|
+
a score=1445299.000000
|
|
658
|
+
s mm8.chrM 3338 294 + 16299 CCCTTCGACCTGACAGAAGGAGAATCAGAATTAGTATCAGGGTTTAACGTAGAATACGCAGCCGGCCCATTCGCGTTATTCTTTATAGCAGAGTACACTAACATTATTCTAATAAACGCCCTAACAACTATTATCTTCCTAGGACCCCTATA--CTATATCAATTTACCAGAACTCTACTCA-------ACTAACTTCATAATAGAAGCTCTACTACTATCATCAACATTCCTATGGATCCGAGCATCTTATCCACGCTTCCGTTACGATCAACTTATACATCTTCTATGAAAAAACTTTCTA
|
|
659
|
+
s rn4.chrM 3316 294 + 16300 CCCTTCGACTTAACAGAAGGAGAATCAGAATTAGTCTCAGGCTTTAACGTCGAATACGCCGCAGGACCATTCGCCCTATTCTTCATAGCCGAGTACACCAACATTATTCTAATAAACGCCCTAACATCAATTGTATTCCTAGGCCCCTTATA--TCATATCAATTACCCTGAATTATACTCA-------ACCAGCTTCATAACAGAAACACTACTTCTATCCACAACTTTCCTATGGATTCGAGCATCCTACCCCCGTTTTCGATATGACCAACTAATGCACCTCCTATGAAAAAATTTCCTC
|
|
660
|
+
i rn4.chrM C 0 C 0
|
|
661
|
+
s oryCun1.scaffold_140182 3485 294 + 20791 CTCATTGACTTAACCGAAGGTGAATCAGAGCTCGTCTCCGGCTTCAATGTGGAGTACGCAGGAGGCCCCTTTGCTCTTTTCTTTTTAGCTGAATATACTAATATTATCCTTATAAATGCCCTTACAGCCATCCTATTCCTAGGCTCATTTCA--CAGCCACACTAACCCAGAAATATTTACA-------GTCAACTTTGCCACAAAGACTCTCCTACTCACAATAACATTTCTATGGATTCGAGCATCCTATCCCCGATTTCGCTATGACCAGCTAATACACCTCTTGTGAAAAAGTTTTCTA
|
|
662
|
+
i oryCun1.scaffold_140182 M 1789 C 0
|
|
663
|
+
s panTro2.chrM 3312 294 + 16554 CCCTTCGACCTTACTGAAGGAGAATCTGAACTAGTCTCAGGCTTTAATATCGAGTATGCCGCAGGCCCCTTTGCCCTATTTTTCATAGCCGAATACATAAACATTATTATAATAAACACCCTCACTGCTACAATCTTCCTAGGAGCAACATA--CAATACTCACTCCCCTGAACTCTACACG-------ACATATTTTGTCACCAAAGCTCTACTTCTAACCTCCCTGTTCCTATGAATTCGAACAGCATATCCCCGATTTCGCTACGACCAGCTCATACACCTCCTATGAAAAAACTTCCTA
|
|
664
|
+
i panTro2.chrM C 0 C 0
|
|
665
|
+
s hg18.chrM 3895 294 + 16571 CCCTTCGACCTTGCCGAAGGGGAGTCCGAACTAGTCTCAGGCTTCAACATCGAATACGCCGCAGGCCCCTTCGCCCTATTCTTCATAGCCGAATACACAAACATTATTATAATAAACACCCTCACCACTACAATCTTCCTAGGAACAACATA--TGACGCACTCTCCCCTGAACTCTACACA-------ACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAACAGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTA
|
|
666
|
+
i hg18.chrM C 0 C 0
|
|
667
|
+
s rheMac2.chr5 34439352 294 - 182086969 CCTTTTGATCTATCAGAAGGAGAGTCAGAGTTAGTCTCAGGCTTCAACATCGAATACGCCACAGGCTCATTTGTCCTCTTCTTTATAGCAGAATATATGAATATTATCATAATAAATGCCCTAACTACTGCTATTTTCATAGGAGTACTACA--CACTATATACTCACCAGAATTCTATACT-------ACAAATTTCATTACCAAGACCCTTCTTTTAACCACTCTATTTTTATGAATTTGAATGGCATACCCTCAATTCCACTGTGACCAACTCATACATCTTTTATGAAAAAACTTCCTA
|
|
668
|
+
i rheMac2.chr5 C 0 C 0
|
|
669
|
+
s bosTau2.chrM 3688 294 + 16338 CCATTTGATTTAACTGAAGGAGAATCAGAGCTAGTCTCGGGCTTCAACGTAGAATATGCAGCAGGACCATTTGCCCTCTTCTTCATAGCAGAGTACGCAAATATTATCATAATAAATATCTTTACAGCAATTTTATTCCTAGGAACATCCCA--CAATCCACACATACCAGAACTCTACACA-------ATCAATTTTACCATTAAATCCCTACTGCTCACAATATCCTTCCTATGAATCCGAGCATCCTACCCTCGATTTCGCTATGACCAACTAATACACTTACTATGAAAAAATTTTCTA
|
|
670
|
+
i bosTau2.chrM C 0 C 0
|
|
671
|
+
s canFam2.chrM 3334 294 + 16727 CCCTTCGACTTAACTGAAGGAGAATCCGAACTAGTCTCTGGATTTAACGTAGAGTATGCAGCAGGTCCTTTCGCCCTATTCTTTCTAGCAGAGTACGCAAATATTATTATAATAAACATCCTCACAACAATTCTGTTCTTCGGCGCATTCCA--CAACCCATTCATACCAGAACTCTACTCT-------ATTAACTTCACTATAAAAACCCTCTTATTAACCATCTGCTTCCTATGAATTCGAGCATCATACCCTCGATTCCGCTACGATCAGTTAATACACTTATTATGAAAAAATTTTCTA
|
|
672
|
+
i canFam2.chrM C 0 C 0
|
|
673
|
+
s dasNov1.scaffold_23239 7152 294 - 16977 CCATTCGACCTAACAGAAGGTGAATCAGAATTAGTGTCCGGATTCAACGTCGAATATGCAGCAGGGCCATTTGCCCTATTCTTTTTAGCTGAGTATGCCAACATCATTATAATAAATGCACTAACAGCCATTTTATTTTTTGGGGCCATACA--CAACCCAATATTCCCAGAACTACACACC-------CTAAACTTAATCACAAAAACCCTGATTCTTACTATAATATTTCTATGAGTACGCGCATCCTATCCACGATTCCGCTATGACCAACTAATACACCTCCTATGAAAAAGCTTTCTC
|
|
674
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
675
|
+
s loxAfr1.scaffold_36650 6335 294 + 16266 CCATTTGATTTAACCGAAGGAGAATCAGAATTAGTTTCTGGCTTCAATGTCGAATACTCAGCTGGCCCTTTCGCCCTATTTTTTATAGCTGAATACGCTAACATCATCATAATAAACGCTCTTACTGTGATTCTATTTATAGGAACCTCTTA--TGACCCCCAAATACCAGAAATTAGTACC-------ATTAACTTTGTCATAAAAACTATTATCCTAACCATCTGCTTTCTATGAGTACGAGCATCTTACCCACGATTCCGATACGACCAACTAATACATCTCCTCTGAAAAAATTTTCTC
|
|
676
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
677
|
+
s echTel1.scaffold_181343 2729 294 + 18297 CCATTTGACTTAACAGAAGGGGAATCAGAATTAGTTTCAGGCTTTAACGTTGAATATGCAGCAGGGCCCTTCGCTCTATTTTTCCTTGCAGAATACGCTAACATCATTATAATGAATGCTCTAACCACTATTCTATTTATAGGAGCATTTCA--TAATATATCTGTTACAGAAATTTACACG-------TTAAATTTTATTACAAAAACACTACTTCTCACTATACTATTTTTATGAGTTCGAGCATCATACCCTCGATTTCGATATGATCAACTAATACATTTATTATGAAAAAACTTCTTA
|
|
678
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
679
|
+
s monDom4.chrUn 117154763 294 + 174229318 CCTTTTGACCTGACAGAAGGAGAGTCGGAATTAGTCTCAGGTTTTAATGTGGAATATGCCGCTGGACCCTTCGCTATATTCTTTTTAGCAGAGTACGCCAACATTATAGCAATAAATGCCATAACAACAATTCTCTTCCTGGGGCCCCCCCT--AAACCACAACCACACTTATACCTGCACC-------ATTAGCTTCATATTCAAAACAATATTACTAACATCAGCCTTCCTATGAGTACGAGCATCATACCCTCGCTTTCGATATGATCAATTAATGTACTTATTATGAAAAAGCTTCCTC
|
|
680
|
+
i monDom4.chrUn C 0 C 0
|
|
681
|
+
s galGal2.chrM 4658 294 + 16775 CCATTTGACCTAACAGAAGGAGAGTCAGAGCTAGTCTCAGGATTTAATGTAGAATATGCCGCCGGACCATTCGCCATATTCTTCTTAGCCGAATACGCCAACATTATACTAATAAACACACTAACCACCGTCCTATTCCTGAACCCAAGCTT--CCTAAATCTCCCACCAGAATTATTTCCC-------ATTGCACTCGCTACAAAAACCCTCCTCCTTTCATCCTCATTTCTATGAATCCGGGCCTCATATCCACGGTTCCGCTATGACCAACTAATACATCTTCTATGAAAAAACTTCCTC
|
|
682
|
+
i galGal2.chrM C 0 C 0
|
|
683
|
+
s xenTro2.scaffold_8452 11814 303 + 23823 CCGTTCGACGTGGTCGAAGGCGAGGCCGAGATCGTGGCTGGTCATATGGTCGAGTATTCGGGCATGGGCTTCGCCATCTTCTTCCTGGCTGAATACGCCGCGATGTGGCTGGTTTCCATCCTGGCCGTGCTGATGTTCCTGGGCGGCTGGCTGCCACCGTTCGCGGCCCTGTCCTTCATCCCGGGCTGGATCTGGCTGGCGGCCAAGACCTTCCTGGTGGTCTCCATGTTCATCTGGATCCGTGCCACCTTCCCGCGCTACCGCTATGACCAGATCATGCGCCTGGGCTGGAAGATCTTCATC
|
|
684
|
+
i xenTro2.scaffold_8452 C 0 I 1675
|
|
685
|
+
s tetNig1.chrUn_random 103513197 294 + 171761319 CCATTTGATCTAACTGAAGGCGAGTCAGAACTAGTTTCTGGTTTTAACGTAGAATACGCAGGAGGCCCTTTCGCCCTATTCTTCCTCGCAGAATACGCCAACATCCTATTTATAAACACCCTTTCCGCCAGCCTCTTCCTAGGAGCCTCCCA--TATCCCAATACTTCCAGAACTGACCACA-------ATAAACCTAATAACCAAAGCAGCCGTCCTCTCACTCGTCTTCCTATGGGTACGAGCCTCCTACCCACGATTTCGCTATGACCAACTAATACACCTTATCTGAAAAAACTTCTTA
|
|
686
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
687
|
+
s danRer4.chrM 4408 294 + 16596 CCGTTCGATCTTACAGAGGGGGAATCAGAACTAGTCTCAGGCTTCAATGTAGAGTATGCAGCAGGACCATTTGCCTTATTCTTTTTGGCTGAGTACTCAAATATTTTACTAATAAACACCCACTCAACAGTACTATTTTTAGGAGCATCGTT--TACCCCAGATGCACCTGAGCTAATAACA-------ATCAGTATTGCAACCAAAACTGCAATACTATCTATTTTGTTTCTCTGAATACGAGCATCATACCCACGATTCCGATACGACCAACTTATGCATCTTATCTGGAAAAACTTTCTT
|
|
688
|
+
i danRer4.chrM C 0 C 0
|
|
689
|
+
|
|
690
|
+
a score=692934.000000
|
|
691
|
+
s mm8.chrM 3632 140 + 16299 CCCCTAACACTAGCATTATGTATGTGACATATTTCTTTACCAATTTTTACAGCGGGAGTACCACCATACATATA------GAAATATGTCTGA--T---AA--AAGAATTACTTTGATAGAGTAAATTATAGAGG-TTCA--AGCCCTCTTAT-TTc-
|
|
692
|
+
s rn4.chrM 3610 140 + 16300 CCACTAACACTAGCATTCTGCATATGATACATTTCCCTGCCAATTTTCCTAGCAGGAATTCCACCCTACACATA------GAAATATGTCTGA--C---AA--AAGAGTTACTTTGATAGAGTAAATAATAGAGG-TTTA--AATCCTCTTAT-TTc-
|
|
693
|
+
i rn4.chrM C 0 I 71
|
|
694
|
+
s oryCun1.scaffold_140182 3779 141 + 20791 CCCCTCACATTAGCCCTGTGCATATGACATATCTCAATACCTATCATACTTTCAAGTATCCCTCCTCAGATATA------GAAATATGTCTGA--T---AA--AAGAGTTACTTTGATAGAGTAAATAATAGAGGATCTT--AGCCCTCTTAT-TTc-
|
|
695
|
+
i oryCun1.scaffold_140182 C 0 I 77
|
|
696
|
+
s panTro2.chrM 3606 141 + 16554 CCACTCACCCTAGCATCACTCATGTGATATATCTCCATACCCACTACAATCTCCAGCATCCCCCCTCAAACCTAA-----GAAATATGTCTGA--T---AA--AAGAATTACTTTGATAGAGTAAATAATAGGAG-TTCA--AATCCCCTTAT-TTc-
|
|
697
|
+
i panTro2.chrM C 0 I 70
|
|
698
|
+
s hg18.chrM 4189 141 + 16571 CCACTCACCCTAGCATTACTTATATGATATGTCTCCATACCCATTACAATCTCCAGCATTCCCCCTCAAACCTAA-----GAAATATGTCTGA--T---AA--AAGAGTTACTTTGATAGAGTAAATAATAGGAG-CTTA--AACCCCCTTAT-TTc-
|
|
699
|
+
i hg18.chrM C 0 I 70
|
|
700
|
+
s rheMac2.chr5 34439646 136 - 182086969 CCACTTACACTAGCATTTTGC-----ATATATCTCAATGCTTGTCCTAATTTCCACCATCCCACCCTAAACATAG-----GCAATATGTCAGA--C---AA--AAGAATTACTTTGATAGAGTAAACAATAGAGA-TTAA--AATCCTCTGAT-TTc-
|
|
701
|
+
i rheMac2.chr5 C 0 I 71
|
|
702
|
+
s bosTau2.chrM 3982 141 + 16338 CCTCTGACACTAGCCCTGTGCATGTGACACGTATCCCTACCCATCCTTACATCAGGCATCCCACCACAAACATAA-----GAAATATGTCTGA--C---AA--AAGAGTTACTTTGATAGAGTAAATAATAGAGG-TTCA--AACCCTCTTAT-TTc-
|
|
703
|
+
i bosTau2.chrM C 0 I 71
|
|
704
|
+
s canFam2.chrM 3628 141 + 16727 CCCTTAACTTTAGCCCTATGCATATGACATGTTGCCTTACCCATTATCACCGCAAGTATCCCACCCCAAACATAA-----GAAATATGTCTGA--T---AA--AAGAGTTACTTTGATAGAGTAAATAATAGAGG-TTTA--AATCCTCTTAT-TTc-
|
|
705
|
+
i canFam2.chrM C 0 I 72
|
|
706
|
+
s dasNov1.scaffold_23239 7446 140 - 16977 CCACTTACATTAGCATTATGTATACTCCACGTATCAGCCCCAGCAACATTCGCAGGCGTACCCCCACACATATA------GGAATATGTCTGA--T---AA--AAGAATTACTTTGATAGAGTAAATAATAGAGG-TTTG--AACCCTCTTAT-TCc-
|
|
707
|
+
i dasNov1.scaffold_23239 C 0 I 72
|
|
708
|
+
s loxAfr1.scaffold_36650 6629 140 + 16266 CCACTAACTCTAGCTCTATGCATATGACACATCTCAGTCCTAATCTCACTAGCATGTATTCCACCACAAGCATA------GAAATATGTCTGA--C---AA--AAGAATTACTTTGATAGAGTAAATTATAGAGG-TCTG--AACCCTCTTAT-TTc-
|
|
709
|
+
i loxAfr1.scaffold_36650 C 0 I 71
|
|
710
|
+
s echTel1.scaffold_181343 3023 140 + 18297 CCAATAACCTTAGCCCTATGCATATGATACATCTCCATTCCTGTCATATTAGCTAGTATTCCCCCTCAAATATA------GAAACATGTCTGA--T---AA--AAGAGTTACTTTGATGGAGTAAATAATAGAGG-TTTA--AATCCCCTTGT-TTc-
|
|
711
|
+
i echTel1.scaffold_181343 C 0 I 67
|
|
712
|
+
s monDom4.chrUn 117155057 141 + 174229318 CCAATTACCCTAGCACTATGTCTAATATTTATCTCTATTCCAATTGCACTATCAAGTATCCCACCACAAATATAA-----GAAATATGTCTGA--C---AA--AAGAATTATCTTGATAGGATAAATAATAGGGG-TTCA--AACCCCCTTAT-TTc-
|
|
713
|
+
i monDom4.chrUn C 0 I 70
|
|
714
|
+
s galGal2.chrM 4952 142 + 16775 CCCCTAACCCTAGCCTTATGCCTCTGACATACCAGCATACCAATCAGCTACGCCGGCCTCCCCCC---AATCTAAG----GAAGCGTGCCTGAACA---AA--AAGGATCACTATGATAAAGTGAAC-ATAGAGG-TATAACAACCCTCTCAC-TTC-
|
|
715
|
+
i galGal2.chrM C 0 I 75
|
|
716
|
+
s xenTro2.scaffold_18215 2547 143 + 3330 CCAATCACACTAGCAATAACACTATGACACATCTCCTTACCAATCTCTCTATCAGGCCTACCACCTCAGATATAG-----GAAACGTGCCCGA--A---AGTTAGGGATCACTNTGATAGAGTGAAACATAGGGG-TTCA--AACCCCCTCGT-CTC-
|
|
717
|
+
i xenTro2.scaffold_18215 M 690 I 2
|
|
718
|
+
s tetNig1.chrUn_random 103513491 148 + 171761319 CCCCTAACATTAGCACTTGTTATCTGACACCTGGCACTCCCAATCACATTTGCAGGCCTCCCGCCTCAAATATAGC-CAGGAGCTGTGCCTGA--AT--TA--AAGGGCCACTTTGATAGAGTGAACCATGGGGG-TTAA--ATTCCCCCCAGCTCCT
|
|
719
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
720
|
+
s danRer4.chrM 4702 150 + 16596 CCAATCACATTAGTTCTAGTACTATGACATATCGCCCTACCAATCGCACTAGCTGGTCTACCCCCACAAACATAACTCAAGAACCGTGCCCGA--ATGCTA--AGGGGTCACTTTGATGGAGTGAACCATAGGGG-TTAA--AATCCCCTCGG-TTCT
|
|
721
|
+
i danRer4.chrM C 0 C 0
|
|
722
|
+
|
|
723
|
+
a score=14911.000000
|
|
724
|
+
s mm8.chrM 3772 70 + 16299 taggacaataggaattgaacctacacttaag-----------aattcaaaattctccgtgctacctaaacaccttatccta
|
|
725
|
+
s xenTro2.scaffold_18215 2692 70 + 3330 TAGAAAGACAGGAATTGAACCTGCACCTGAG-----------AGATCAAAACCCTCCGTACTCCCACTATACCACTCTCTA
|
|
726
|
+
i xenTro2.scaffold_18215 I 2 C 0
|
|
727
|
+
s tetNig1.chrUn_random 103513639 70 + 171761319 TAGAAAGAAGGGACTCGAACCCAACCCAGAGAGATCAAAACT-----------CTCAGTGCTTCCACTACACCACTTTCTA
|
|
728
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
729
|
+
s danRer4.chrM 4852 70 + 16596 TAGAAAGAAGGGGGTCGAACCCATGCCCAAG-----------AGATCAAAACTCTTAGTGCTTCCACTACACCACTTTCTA
|
|
730
|
+
i danRer4.chrM C 0 C 0
|
|
731
|
+
e monDom4.chrUn 117155198 70 + 174229318 I
|
|
732
|
+
e echTel1.scaffold_181343 3163 67 + 18297 I
|
|
733
|
+
e loxAfr1.scaffold_36650 6769 71 + 16266 I
|
|
734
|
+
e dasNov1.scaffold_23239 7586 72 - 16977 I
|
|
735
|
+
e canFam2.chrM 3769 72 + 16727 I
|
|
736
|
+
e bosTau2.chrM 4123 71 + 16338 I
|
|
737
|
+
e rheMac2.chr5 34439782 71 - 182086969 I
|
|
738
|
+
e panTro2.chrM 3747 70 + 16554 I
|
|
739
|
+
e hg18.chrM 4330 70 + 16571 I
|
|
740
|
+
e rn4.chrM 3750 71 + 16300 I
|
|
741
|
+
e oryCun1.scaffold_140182 3920 77 + 20791 I
|
|
742
|
+
e galGal2.chrM 5094 75 + 16775 I
|
|
743
|
+
|
|
744
|
+
a score=791168.000000
|
|
745
|
+
s mm8.chrM 3842 168 + 16299 ATAG--TAAGGTCAGCT-AA-T-TAAGCTATCGGGCCCATACCCCGAAAACGTTGGTTTAAATCCTTCCCGTACTAATAAATCCTATCACCCTTGCCATCATCTACTTCA--CAATCTTCTTAGGTCCTGTAATCACAATATCCAGCACCAACCTAATACTAATATGAGTAGGCC
|
|
746
|
+
s rn4.chrM 3821 167 + 16300 ATAG--TAAGGTCAGCT-AA-C-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTT-AAACCCTTCCCGTACTAATAAATCCAATTACCCTAACCATTATTTACTTAA--CCACCTTTAAAGGCCGCCTAATCACGACACTTAGCACCAACTTACCACCAATATGAGTAGGAT
|
|
747
|
+
i rn4.chrM I 71 C 0
|
|
748
|
+
s oryCun1.scaffold_140182 3997 168 + 20791 TAAG--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTATATCCTTCCCGTACTAATTAACCCCCTAACTCTTATTATTATTATATTTA--CTCTATTTATAGGCACGATAATCACAGTATTTAGCTCCCACTGACTAACTATATGAATCGGAT
|
|
749
|
+
i oryCun1.scaffold_140182 I 77 C 0
|
|
750
|
+
s hg18.chrM 4400 167 + 16571 aAAG--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTT-ATACCCTTCCCGTACTAATTAATCCCCTGGCCCAACCCGTCATCTACTCTA--CCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTTACCTGAGTAGGCC
|
|
751
|
+
i hg18.chrM I 70 C 0
|
|
752
|
+
s panTro2.chrM 3817 167 + 16554 aAAG--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTT-ACACCCTTCCCGTACTAATTAATCCCCTAGCCCAACCCATCATCTACTCTA--CCATCCTTACAGGCACGCTCATTACAGCGCTAAGCTCACACTGATTTTTCACCTGAGTAGGCC
|
|
753
|
+
i panTro2.chrM I 70 C 0
|
|
754
|
+
s rheMac2.chr5 34439853 160 - 182086969 -GAT--TAAGGTCAGCT-AA-A-TAAGCTATTGGGCCCATACACCGAAAATGTTGGTT-ATACCCTTCCCGTAC--------CCCTTAGCTCAACTTATTATTTCCCTCAGCCCATTTTCACAGGAACTCATATCACAATGCTATGCTCACACTGATTTCTAATCTGAACAGGGC
|
|
755
|
+
i rheMac2.chr5 I 71 C 0
|
|
756
|
+
s bosTau2.chrM 4194 168 + 16338 TTAG--TAAGGTCAGCT-AA-T-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTATATCCTTCCCGTACTAATAAACCCAATTATCTTTATTATTATTCTACTAA--CCATTATACTAGGAACTATTATTGTCATAATCAGTTCTCACTGACTACTTGTCTGAATCGGGT
|
|
757
|
+
i bosTau2.chrM I 71 C 0
|
|
758
|
+
s canFam2.chrM 3841 169 + 16727 aCAG--TAAGGTCAGCTAAA-T-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTATACCCTTCCCGTACTAATAAAACCCCCTATTCTCATTATCATCATAGCAA--CTATCATGACAGGAACCATAATCGTCATACTAAGCTCGCACTGATTACTGATCTGAATTGGAT
|
|
759
|
+
i canFam2.chrM I 72 C 0
|
|
760
|
+
s dasNov1.scaffold_23239 7658 166 - 16977 --AG--TAAGGTCAGCT-AA-C-AAAGCTATCGGGCCCATACCCCGAAAATGTAGGCTCATACCCTTCCCGTACTAATAAATCCCttaatttttattattattatattta--CCTTAATCTTAGGAACAGTAATTACCATAATTAGCTCCCATTGATTATTAATCTGGATAGGCC
|
|
761
|
+
i dasNov1.scaffold_23239 I 72 C 0
|
|
762
|
+
s loxAfr1.scaffold_36650 6840 169 + 16266 CTAG--TAAGGTCAGCT-AA-ATTAAGCTATCGGGCCCATACCCCGAAAATGTCGGATCACACCCCTCCCATACTAATAAACCCACTAGCTCTTAGCCTAATCCTAACAA--CACTACTCGCAGGAACACTGATTACCATAATAAGCTCCCATTGATTGACAGCCTGAATGGGAC
|
|
763
|
+
i loxAfr1.scaffold_36650 I 71 C 0
|
|
764
|
+
s echTel1.scaffold_181343 3230 167 + 18297 ctaG--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTAT-TCCTTCCCATACTAATTAACCCATTAGCTTCCATTATTATGTCTAGTA--CTCTAATTTCAGGCACTCTAATTACTTTAATCAGCTCTCACTGACTTATAGCATGAATAGGTC
|
|
765
|
+
i echTel1.scaffold_181343 I 67 M 371
|
|
766
|
+
s monDom4.chrUn 117155268 165 + 174229318 ---G--TAAGGTCAGCT-AA-A-TAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTTGCACCCTTCCCATACTAATGTCCCCCTATGTATTAACCATTGTTTCGCTCA--GCTTATTAACAGGAACTTCAGTAACTCTAATTAGCAACCATTGGTTAACTGCCTGAATAGGCC
|
|
767
|
+
i monDom4.chrUn I 70 C 0
|
|
768
|
+
s galGal2.chrM 5169 168 + 16775 CTAG--TAAGGTCAGCT-AA-C-TAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTACTAATGAACCCCCATGCAAAACTAATCTGCACAGTAA--GCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCT
|
|
769
|
+
i galGal2.chrM I 75 C 0
|
|
770
|
+
s xenTro2.scaffold_18215 2762 165 + 3330 ---G--TAAAGTCAGCT-AA-A-AAAGCTTTTGGGCCCATACCCCAAACATGTTGGTTAAACTCCTTCCTTTACTAATGAACCCTATCGCACTATCAATAATCCTCTCAA--GCCTAGCATTAGGCACTATCCTCACTGTATCAAGCAATCATTGATTCCTAGCCTGAATAGGCC
|
|
771
|
+
i xenTro2.scaffold_18215 C 0 C 0
|
|
772
|
+
s tetNig1.chrUn_random 103513709 166 + 171761319 ---G--TAAAGTCAGCT-AAGT-TAAGCTTTTAGGCCCATACCCTAAAGATGTAGGTTAAAATCCTTCCTTTACTAATGAGCCCTTACATTACAGCCTCCTTGCTATTTG--GCCTACTCCTAGGCACAACAATCACCGCAACCAGCTCCCACTGACTAATTGCCTGAATAGGCC
|
|
773
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
774
|
+
s danRer4.chrM 4922 167 + 16596 ---GGATGAGGTCAGCT-AA-T-TAAGCTACCGGGCCCATACCCCGAACATGATGGTTAAAGTCCCTCCTTCATCAATGAACCCTTATGTCCTTATAATTTTAATATCCA--GCCTAGGTCTAGGAACCACATTAACTTTTTCTAGCTCACACTGAATTTTAGCCTGAATAGGAT
|
|
775
|
+
i danRer4.chrM C 0 C 0
|
|
776
|
+
|
|
777
|
+
a score=1213783.000000
|
|
778
|
+
s mm8.chrM 4010 399 + 16299 TGGAATTCAGCCTACTAGCAATTATCCCCATACTAATCAACAAAAAAAACCCACGATCAACTGAAGCAGCAACAAAATACTTCGTCACACAAGCAACAGCCTCAATAATTATCCTCCTGGCCATCGTACTCAACTATAAACAACTAGGAACATGAAT--ATTTCAACAACAAAC-AAACGGTCTTATCCTTAAC----ATAACATTAATAGCCCTATC------CATAAAACTAGGCCTCGCCCCATTCCACTTCTGATTACCAGAAGTAACTCAAGGGATCCCACTGCACATAGGACTTATTCTTCTTACATGACAAAAAATTGCTCCCCTATCAATTTTAATTCAAATTTACCCGCTACTCAACTCTA--CTATCATTTT----------AATA-CTAGCAATTACTTCTATTTTCATAGGGG
|
|
779
|
+
s rn4.chrM 3988 399 + 16300 TGGAAATAAGCCTTTTAGCTATCATCCCACTTCTAGCCAACAAAAAAAGCCCACGATCAACTGAAGCAGCAACAAAATATTTTCTAACCCAAGCTACAGCCTCAATAATTATCCTACTAGTCATCATCCTCAACTACAAACAATCAGGAATATGAAC--CCTTCAACAACAAAC-CAATAACATACTACTCAAC----ATAATACTCATTTCACTGGC------CATAAAACTTGGACTAGCCCCATTCCACTACTGACTACCCGAAGTCACCCAAGGAATTCCCCTACACATTGGATTAATCTTACTAACATGACAAAAAATTGCTCCACTATCAATTCTATACCAATTTTATCAACTCCTAAACCCAA--CTATCACCAC----------CATT-CTCGCAATTTCATCAGTCTTTGTTGGCG
|
|
780
|
+
i rn4.chrM C 0 C 0
|
|
781
|
+
s oryCun1.scaffold_140182 4165 399 + 20791 TAGAAATAAACATACTAGCAATTATCCCTATTCTAATCAACAAAGCCACCCCACGATCAACAGAAGCTGCAACCAAATATTTTCTAACACAAGCCACAGCATCTATAATCTTAATAATAGCTATTACACTTAATATCCTTGACTCCGGACAATGAAC--CCT-----AATTAAT-CCACAGAATCA-ACTTACT----CCAGTCCTAATTACACTGGCACTAATCATTAAACTAGGAATAGCCCCCTTCCACTTCTGAGTACCAGAGGTCACCCAAGGAGTTCCCCTAAAATCAGGATTAATCCTTCTCACGTGACAAAAATTAGCCCCCCTATCCATCCTTTACCAAATCTCCCCATCAATTAATCCAA--CTATAATAAT----------ATCA-GTAGCCATTCTATCAATTATAGTTGGCG
|
|
782
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
783
|
+
s hg18.chrM 4567 399 + 16571 TAGAAATAAACATGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCCATAATCCTTCTAATAGCTATCCTCTTCAACAATATACTCTCCGGACAATGAAC--CAT-----AACCAATACTACCAATCAATACTCATCATTAATAATCATAATGGCTATAGC------AATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAGGCACCCCTCTGACATCCGGCCTGCTTCTTCTCACATGACAAAAACTAGCCCCCATCTCAATCATATACCAAATCTCTCCCTCACTAAACGTAA--GCCTTCTCCT----------CACT-CTCTCAATCTTATCCATCATAGCAGGCA
|
|
784
|
+
i hg18.chrM C 0 C 0
|
|
785
|
+
s panTro2.chrM 3984 399 + 16554 TAGAAATAAATATACTAGCTTTTATCCCAATCCTAACCAAAAAAATAAGCCCCCGCTCCACAGAAGCCGCCATCAAATACTTTCTCACACAAGCAACTGCGTCCATAATTCTCCTGATAGCTATCCTCTCCAACAGCATACTCTCCGGACAATGAAC--CAT-----AACCAATACTACCAATCAATACTCATCATTAATAATTATAATAGCAATGGC------AATAAAACTAGGAATAGCCCCCTTTCACTTTTGAGTTCCAGAAGTTACCCAAGGCACCCCCCTAATATCCGGCCTACTCCTCCTCACATGACAAAAATTAGCCCCTATTTCAATTATATACCAAATCTCCTCATCACTGAACGTAA--ACCTTCTCCT----------CACC-CTTTCAATCTTGTCCATTATAGCAGGCA
|
|
786
|
+
i panTro2.chrM C 0 C 0
|
|
787
|
+
s rheMac2.chr5 34440013 395 - 182086969 TAGAAATAAACATACTAGCACTTACCCTAATCTTAATTAAAAAAATAAATCCCCGCTCTACAGAAGCAGCCACCAAATATTTCCTTACACAAGCAACCATATCTATAATTCTCATGACAGGTATCCTTTCCAATAACCTGTTCTCCAGACAATGAAA--AAT-----AATAAACACTATCAATCAATTCTTATCCTTAATAATAATAGTGGCCCTAGT------AATAAAACTAGGAATATTCCCCTTTCACTTCTGAGTCTCAGTGATAACCCAAGGAATCTCTTTAATGTCTGGTATACTTCTCCTCACATGACAAAAAGTAGCTCTTATCTCTATTATGTTTCAAAGTTTTTCATCAACAAACAGGA--ACATCCTCCT----------AACA-----CAATCCTATCCATTATAGTGGGTG
|
|
788
|
+
i rheMac2.chr5 C 0 C 0
|
|
789
|
+
s bosTau2.chrM 4362 399 + 16338 TTGAAATAAATATACTCGCCATCATCCCCATCATAATAAAAAATCACAACCCACGAGCTACAGAAGCATCAACTAAATATTTTTTGACTCAATCAACAGCCTCAATACTACTAATAATAGCCGTCATCATTAACCTAATATTCTCAGGCCAATGAAC--CGT-----AATAAAACTATTTAACCCAATAGCCTCAATACTTATAACGATAGCCCTAGC------TATAAAACTAGGAATAGCCCCATTTCACTTCTGAGTCCCAGAAGTAACACAGGGCATCCCCCTATCCTCAGGCCTTATCCTACTGACATGACAAAAACTAGCACCTATATCTGTACTTTACCAAATCTTCCCATCAATTAACCTAA--ACTTAATTCT----------AACC-CTATCAGTTTTATCAATCCTAATTGGAG
|
|
790
|
+
i bosTau2.chrM C 0 C 0
|
|
791
|
+
s canFam2.chrM 4010 399 + 16727 TCGAAATAAACATGCTAGCCATCATCCCTATTCTCATAAAAAAGTACAATCCACGAGCCATAGAGGCCTCTACAAAATATTTTCTTACACAAGCTACAGCCTCAATATTACTAATAATAGGAGTCACTATCAACCTCCTTTACTCCGGCCAATGGGT--AAT-----CTCAAAAATCTCAAACCCCATCGCATCCATCATGATAACCACTGCCCTAAC------AATAAAACTAGGCCTATCTCCATTCCACTTCTGAGTTCCCGAAGTAACACAGGGAATTACGCTCATATCAGGAATAATCCTACTAACATGACAAAAAATCGCACCTATATCCATCCTATATCAAATCTCTCCATCAATTAACACTA--ACCTTCTTAT----------ACTA-ATAGCCCTTACATCCGTTCTAGTAGGAG
|
|
792
|
+
i canFam2.chrM C 0 C 0
|
|
793
|
+
s dasNov1.scaffold_23239 7824 399 - 16977 TAGAAATAAACATATTCTCAATAATCCCCATTATCATAATAAAATCACACCCTCGATCAACAGAAGCCGCCACCAAATATTTCATGACACAAGCAACAGCATCTATACTTCTAATAATAGGCGTAATCATTAACTTATACTACTCAGGACAATGAAC--AAT-----TATAAATTCACTCAACCCAGTTACATCATATATAATAACCATCGCACTTGC------CATAAAACTAGGACTAGCCCCATTCCACTTCTGAGTGCCAGAGGTAACGCAAGGTACCCAACTAACATCAGGAATAATTCTTCTCACATGACAAAAACTAGCCCCAATAACAATCCTCTATCAAATCCACTCATCCCTAAACCTAA--ATCTAATACT----------AACC-CTAGCTATCCTTTCAATCCTAATCGGGG
|
|
794
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
795
|
+
s loxAfr1.scaffold_36650 7009 399 + 16266 TAGAAATGAACATACTTACTATAATTCCCATTCTAATAAAGACAACCAATCCACGATCCACAGAAGCCGCCACAAAGTACTTTATAACCCAAGCCATAGCATCCATAATACTTATAATGGCTTTAACAATTAACCTAATATACTCAGGACAATGATC--AAT-----TACAAAAATAACCAACCCTGTAGCATCAAACATAGCATTAATAGCTTTAAT------AACCAAACTAGGCTCAGCCCCATTCCACTTCTGAGTTCCAGAAGTAACGCAAGGAGTCGAACTTACACCAGGGATGATCTTGTTAACCTGACAAAAATTAGCACCATTATCCCTACTATATCAAATGGCCACCTACACTAACACTA--ACCTAATCTA----------CCTT-TCTGGTCTACTTTCAATCCTAATTGGGG
|
|
796
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
797
|
+
s echTel1.scaffold_49882 4260 392 - 7170 TTGAAATGAATATATTTGCTATTATTCCTATGATCATAAAAAATAACTCCCCCCGAGCAATTGAGGCTGCAATAAAATATTTCCTCATTCAAGCATCCGCCTCCATACTACTACTTATAGCAGCCTCCCTTAATTTTATATACTCAGGTCAATGAAC--GTT-----AACAGAAATAAATGTCTCAATAGCATCCCTAATTATATTAATTGCTATACT------GATAAAATTAGGTATGGCACCATTTCACTTCTGAGTCCCAGAAGTTACTCAAGGTACTGTTTTATTGACCAGCCTCATTATTTTAACTTGACAAAAGCTAGCCCCCCTAGCTATTCTTTTCCAAATCGCCCCCTCAATTAATGTAG--ATATTATTCT----------TACA-ACAGCTATCCTATCAATTCTA-------
|
|
798
|
+
i echTel1.scaffold_49882 I 1469 n 67
|
|
799
|
+
s monDom4.chrUn 117155433 399 + 174229318 TAGAAATTAATACACTGGCCATTATTCCACTAATAACTTACCCCCACCACACACGAAACACAGAATCAGCCATCAAATATTTCATAACTCAAGCTACAGCTTCAATACTCCTCATATTCTCTATTATTTATAATGCATCCTTCACTAACCAATGGAC--CAT-----TAACCACTCACCCAACCAATGAGCCTCCTTACTAATAACCCTAGCCCTAGC------AATAAAACTAGGACTAGCCCCCTTTCACTTTTGAGTGCCAGAAGTTACACAAGGAATCCCACTATTATCTGGTATAATACTCCTAACATGACAAAAAATTGCTCCCATCTCAATCATATACCAAATTTCACCCTCACTTAATATAC--AAGTACTAAT----------AACC-TTAAGCATTTTATCCACACTATTAGGAG
|
|
800
|
+
i monDom4.chrUn C 0 C 0
|
|
801
|
+
s galGal2.chrM 5337 399 + 16775 TAGAGATCAACACCTTAGCCATCATCCCCCTCATCTCCAAGTCACACCACCCCCGAGCGATTGAAGCCACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTCGAGCATAACCAACGCCTGATCCACCGGACAATGAGA--CAT-----TACACAACTAAACCACCCGACATCATGCCTAATATTAACAATAGCAATCGC------AATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCCAATCACACTCCTCCTCCTAACATCACAGTCTCTTAATACCA--CCTTACTCAC----------CCTC-CTAGCAATCTCCTCCACCCTAATCGGAG
|
|
802
|
+
i galGal2.chrM C 0 C 0
|
|
803
|
+
s xenTro2.scaffold_18215 2927 399 + 3330 TAGAAATCAATACCCTAGCTATCATCCCACTGATAGCCCAAAACCACCACCCACGAGCAGTTGAAGCCTCAACCAAATACTTTCTAACTCAAGCTGCAGCCTCAGCTCTTCTCTTATTCTCAGCTTTAAATAATGCTTGGTTCACTGGAGAATGGTC--AAT-----TATAAACTTGACCAACTCAATCTCATGCACCACCATAACCATCGCCATCTG------CATGAAACTCGGACTAGCACCATTCCACTTCTGACTCCCAGAGGTCCTCCAAGGACTTAATTTAACAACAGGTCTTATCCTATCTACCTGACAAAAACTTGCCCCAATGGCCATCCTCTACCAGATCTCTCCATCAATAAACACCT--CCCTTCTTCT----------TTTA-ATTGGACTAACCTCAACATTAATCGGGG
|
|
804
|
+
i xenTro2.scaffold_18215 C 0 n 0
|
|
805
|
+
s tetNig1.chrUn_random 103513875 396 + 171761319 TAGAAATCAACACCCTCGCCATTATTCCCCTGATAGCCCAACACCACCACCCACGAGCAGTAGAGGCCACAACCAAATATTTCCTCACACAAGCCACCGCAGCAGCCATACTCCTATTCGCAAGCACAACCAACGCATGACTGACCGGACAGTGAGAACTGC-----AACAA--ATAACACACCCCCTTCCCTCCACATTAATTATTCTTGCCCTGGC------CCTAAAAATTGGACTAGCCCCACTACACACTTGACTCCCAGAAGTCCTCCAAGGATTAGACCTAACAACCGGACTCGTCCTCTCCACATGACAAAAGCTCGCACCCTTTGCCCTCCTCCTCCAACT---TCAACCAAACAACCCAA--CACTGCTCGT----------CATC-CTAGGAGTGCTATCAACACTAATCGGAG
|
|
806
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
807
|
+
s danRer4.chrM 5089 399 + 16596 TAGAAATTAATACTTTAGCAATTGTCCCTCTAATAGCACAACAACACCACCCACGGGCAGTAGAAGCCACCACAAAATACTTCCTTATTCAAGCTGCTGCCGCAGCAATAATTCTATTCACAAGTACAACAAATGCCTGAATTTCAGGACAATGGGA--TGT-----TACAGGTATACCAGGCCCAGCCACCAGTACAGCAATAATGTTTGCATTGGC------TCTCAAAATCGGTCTAGCACCAATACATTTTTGATTACCAGAAGTTCTTCAAGGATTAGATCTGTTGACAGGACTAATTTTGTCAACCTGACAAAAACTTGCCCCAATAGCATT--------AA-----TTATCCAAACGACCCAAACCACTGACCCTCTTATTCTTACATCACTAGGAATTGCTTCCTCTCTCATTGGAG
|
|
808
|
+
i danRer4.chrM C 0 C 0
|
|
809
|
+
|
|
810
|
+
a score=552799.000000
|
|
811
|
+
s mm8.chrM 4409 135 + 16299 CATGAGGAGGACTTAACCAAACACAAATACGAAAAATTATAGCCTATTCATCAATTGCCCACATAGGATGAATATTAGCAATTCTTCCTTACAACCCATCCCTCACTCTACTCAACCTCATAATCTATATTATTC
|
|
812
|
+
s galGal2.chrM 5736 135 + 16775 GCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCCTATAACCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTA
|
|
813
|
+
i galGal2.chrM C 0 C 0
|
|
814
|
+
s monDom4.chrUn 117155832 135 + 174229318 GATGAGGAGGACTAAACCAAACACACCTACGAAAAATACTAGCATACTCATCAATCGCTCACATAGGGTGAATAACAATTATTATCATTATTTACCCTACACTCACTATACTAAATTTACTAATTTATTTTACTA
|
|
815
|
+
i monDom4.chrUn C 0 C 0
|
|
816
|
+
s echTel1.scaffold_181343 3775 135 + 18297 GCTGGGGCGGCCTAAACCAAACCCAACTACGAAAAATTATAGCGTACTCGTCAATTGCTCACATGGGCTGAATAGCTGCCGTAATAATTTATAATCCCACCCTAATATTACTTAACCTATTATTATACTTAATCT
|
|
817
|
+
i echTel1.scaffold_181343 M 371 C 0
|
|
818
|
+
s loxAfr1.scaffold_36650 7408 135 + 16266 GATGAGGAGGCCTAAATCAAACACAACTACGAAAAATCTTAGCCTATTCATCAATCTCCCATATAGGCTGAATACTCATTATCTTGCCCTTCAATCCCACCCTTACCCTACTAAACTTAACCATTTACATTATAC
|
|
819
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
820
|
+
s dasNov1.scaffold_23239 8223 135 - 16977 GATGAGGAGGACTAAACCAAACACAACTACGAAAAATTATAGCGTATTCATCCATTGCACACATAGGATGAATAACAGCAATCATTATATACAATACATCATTAATGATACTAAACCTAGTGATCTACCTAATAA
|
|
821
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
822
|
+
s canFam2.chrM 4409 135 + 16727 GCTGAGGCGGACTAAATCAAACTCAACTACGAAAAATCATAGCATACTCCTCCATTGCCCACATAGGCTGAATAGCCGCTATCATTACTTATAACCCTACAATAATAGTTCTAAACTTAACTTTATATATTCTAA
|
|
823
|
+
i canFam2.chrM C 0 C 0
|
|
824
|
+
s bosTau2.chrM 4761 135 + 16338 GCTGAGGGGGACTAAACCAAACACAACTCCGAAAAATCATAGCCTACTCATCAATCGCTCATATAGGCTGAATAACAGCAGTACTACCATATAACCCCACCATAACATTGCTAAACTTAATTATCTATATCATTA
|
|
825
|
+
i bosTau2.chrM C 0 C 0
|
|
826
|
+
s rheMac2.chr5 34440408 87 - 182086969 GTTGAGGGGAACTTAACCAAA--CAACTGCGTCAAATCCTAGCCCACTCCTC----------------------------------------------AACATTACCACCCTAAACCTGATTATTTACCTTATCT
|
|
827
|
+
i rheMac2.chr5 C 0 C 0
|
|
828
|
+
s panTro2.chrM 4383 135 + 16554 GCTGAGGCGGACTAAACCAAACCCAACTACGCAAAATCCTAGCATACTCCTCAATCACCCACATAGGCTGAATAATAGCAGTCCTACCATATAACCCTAACATAACCATTCTTAATTTAACCATTTACATCATCC
|
|
829
|
+
i panTro2.chrM C 0 C 0
|
|
830
|
+
s hg18.chrM 4966 135 + 16571 GTTGAGGTGGATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCC
|
|
831
|
+
i hg18.chrM C 0 C 0
|
|
832
|
+
s oryCun1.scaffold_140182 4564 135 + 20791 GTTGAGGTGGACTAAACCAAACCCAACTACGAAAAATCCTAGCATACTCTTCAATCGCCCACATAGGATGAATAGCAGCTATCATCACATTTAACCCAAATACTATAGTCCTAAACCTAATTATCTATATTCTCA
|
|
833
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
834
|
+
s rn4.chrM 4387 135 + 16300 CCTGAGGAGGACTTAACCAGACCCAAACACGAAAAATCATAGCATACTCATCAATTGCCCACATAGGATGAATAACAGCAATCCTTCCATACAACCCTAACTTAACCCTCCTAAACTTAACAATTTACATCCTAC
|
|
835
|
+
i rn4.chrM C 0 C 0
|
|
836
|
+
s tetNig1.chrUn_random 103514271 135 + 171761319 GCTGAGGAGGCCTAAACCAAACCCAGCTACGAAAAATCCTGGCATACTCATCCATCGCCCACCTAGGTTGAATAATCTTAATTCTGCAATTTTCACCAACCCTCACCCTCCTCACACTTATATTATACCTAATCA
|
|
837
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
838
|
+
s danRer4.chrM 5488 135 + 16596 GGTGAAGCGGACTTAACCAAACCCAACTCCGAAAAATTCTAGCTTATTCATCAATTGCCCACATAGGGTGAATAATTATTGTTATCCAGTACGCTCCGCAACTTACTCTGATTGCTTTAGGAACATATATCTTTA
|
|
839
|
+
i danRer4.chrM C 0 C 0
|
|
840
|
+
e xenTro2.scaffold_18215 3326 0 + 3330 I
|
|
841
|
+
|
|
842
|
+
a score=401805.000000
|
|
843
|
+
s mm8.chrM 4544 198 + 16299 TTACAGCCCCTATATTCATAGCACTTATACTAAAT-AA-----CT-CTATAACCATC---AACTCAATCTCACTTCTATGAAATAAAACTCCAGCAATACTAACTATAATCTCACTGATATTACTATCCCTAGGAGGCCTTCCACCACTAA----------CAGGATTCTTACCAAAATGAATTATCATCACAGAACTTATAAAAAACAACTGTCTAA
|
|
844
|
+
s rn4.chrM 4522 198 + 16300 TTACTGTTCCAATATTCAATTACATCATAACAAAC-TC-----AG-CAACAACAATC---AACACACTCTCACTCGCATGAAATAAAACTCCCATAATCCTAACCATAGCATCCATCATCCTCCTATCACTAGGAGGACTCCCCCCTCTCA----------CAGGATTTTTACCAAAATGAGCAATTATCTCCGAGCTTCTAAAAAACAACTGCTCAA
|
|
845
|
+
i rn4.chrM C 0 C 0
|
|
846
|
+
s oryCun1.scaffold_140182 4699 198 + 20791 TGACAATCCCTATATTCATAATATTCATACAGCAC-TC-----AA-GTACAACCACT---CTATCACTATCACAAATGTGAAACAAAAATCCACTAATAGTATCTACTATCCTAATCACCCTAATATCCCTAGGAGGCCTGCCCCCACTCA----------CAGGTTTTATCCCTAAATGAATTATCATCCAGGAATTAACAAAAAATGGCAATATCA
|
|
847
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
848
|
+
s hg18.chrM 5101 198 + 16571 TAACTACTACCGCATTCCTACTACTCAACTTAAAC-TC-----CA-GCACCACGACC---CTACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAA----------CCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCA
|
|
849
|
+
i hg18.chrM C 0 C 0
|
|
850
|
+
s panTro2.chrM 4518 198 + 16554 TAACTACTACCGCATTTCTGCTACTCAACTTAAAC-TC-----CA-GCACCACAACC---CTACTACTATCTCGCACCTGAAACAAGCTAACATGATTAACTCCCCTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTACCCCCACTAA----------CTGGCTTCTTACCCAAATGAGTTATCATCGAAGAATTCACAAAAAATAATAGCCTCA
|
|
851
|
+
i panTro2.chrM C 0 C 0
|
|
852
|
+
s rheMac2.chr5 34440495 198 - 182086969 TAACAACAACTGCATTTCCAGCACTCAACCTGAGT-AT-----AA-GCACCACAAAG---CTATCATTATTTCACACCTGAAACAAATGAACATGGTTGACACCTGTAATTCCACTAATTCTACTATCCTTAGGAGGTTTATCCCCATTAA----------CAGGGTTCCTGCCTTAATGAATCACCATTCAAGAATTTACAGAAAACAATAGCCTTA
|
|
853
|
+
i rheMac2.chr5 C 0 C 0
|
|
854
|
+
s bosTau2.chrM 4896 198 + 16338 TAACTTCCACCATATTTACCATATTTATAGCCAAT-TC-----CA-CCACCACTACC---CTGTCATTATCACACACATGAAATAAAACACCCATTATAACCGTCCTAATTCTTGCCACTCTCCTATCCATAGGAGGACTCCCTCCCCTAT----------CTGGGTTTATACCAAAATGAATAATCATCCAAGAGATAACAAAAAATAACAGCATCA
|
|
855
|
+
i bosTau2.chrM C 0 C 0
|
|
856
|
+
s canFam2.chrM 4544 198 + 16727 TAACACTATCTACCTTCATACTATTTATATTAAAC-TC-----AT-CCACCACGACC---CTATCTTTATCCCACATATGAAACAAATTTCCCCTAATCACTTCCATAATCTTAATCTTAATACTATCCCTAGGAGGACTACCCCCATTAT----------CTGGCTTCATCCCCAAATGAATAATTATTCAAGAATTAACGAAAAATAACATAATTA
|
|
857
|
+
i canFam2.chrM C 0 C 0
|
|
858
|
+
s dasNov1.scaffold_23239 8358 198 - 16977 TAACAATCACAATATTTGCCCTCTTTA---TTAAC-TC-----AA-CAACAACAACTACACTATCTCTATCTCTTACATGAAACAGTACACCAATCCTAACAACAATGCTCCTAACAACCCTACTATCACTAGGAGGCCTTCCCCCACTAT----------CAGGCTTCGCACCAAAATGAATAATCATCCAAGAGATGACAAAAAACAACATACTCC
|
|
859
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
860
|
+
s loxAfr1.scaffold_36650 7543 198 + 16266 TAACACTGTCCATCTTTATAATTCTAA-CAAATAC-TT-----TCACAACTTCAATA---TCATCCCTAACTCTAATATGAAACAAAACACCTGCAATAACCATTATACTTATAACTACTTTACTATCTTTAGGAGGACTACCCCCACTAT----------CGGGATTCATACCCAAATGACTTATGATTCACGAACTAACCAAAAACAACAGTATTA
|
|
861
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
862
|
+
s echTel1.scaffold_181343 3910 198 + 18297 TCACATTTTCAGCATTCACCATCTTAATTAAATGC-TC-----TT-CAACCTCAACT---TCTATACTAACAATAACCTGAAATTCCTACCCATTAATAGTCTCTATCCTATTAATTATTCTTTTATCAATGGGAGGATTACCTCCATTAA----------CAGGTTTTGTACCTAAATGACTAATTATCTATGAACTGATTAAAAATACTAACATTG
|
|
863
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
864
|
+
s monDom4.chrUn 117155967 198 + 174229318 CAACCATTACCATATTCCTTATATTCAACCACTCA-TC-----AA-TAACCAAAATC---AACTCACTATCAACCCTATGAAACAAGTCTACCCCCATTACCATCATTATTATATTAACACTTCTATCCTTAGGGGGACTACCCCCATTAA----------CAGGTTTTATACCCAAATGATTAATTCTCCAAGAACTAATTTCATATAAAAATATAC
|
|
865
|
+
i monDom4.chrUn C 0 C 0
|
|
866
|
+
s galGal2.chrM 5871 198 + 16775 TGACCTCAACTGTATTCCTATCCCTAGCCCAAATC-AA-----AG-TCCTAAAACTG---TCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAA----------CCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCC
|
|
867
|
+
i galGal2.chrM C 0 C 0
|
|
868
|
+
s xenTro2.scaffold_96 2673143 176 - 2855184 TCACAGGCGAGACATCCCTGGCACATATACTAAATATT-----TC-TAACAATAATT------------------ACACAATATAA------------------TATGCACCTTCCAAACTTAGTGTCCCTGGGGTGCTGCCCTCTGCTAAAGCTTTATTTAAACATTCTCATTAAGAAAAATACTTTGTATAAAACTAACTGAGGGCATATTTTTAA
|
|
869
|
+
i xenTro2.scaffold_96 n 0 I 6355
|
|
870
|
+
s tetNig1.chrUn_random 103514406 198 + 171761319 TAACCTCCTCCGCCTTCCTCACATT-----CATCC-TCAACAAAA-CCACAACAATC---AATGCACTAGCCACATCCTGAGCCAAAACCCCCATTCTTACATCCCTCTTACCCCTTGTTCTCCTATCCCTCGGAGGCCTCCCTCCGCTAA----------CTGGCTTCATACCAAAATGACTAATCCTACAAGAACTAACTAAACACGATCTCGCCC
|
|
871
|
+
i tetNig1.chrUn_random C 0 C 0
|
|
872
|
+
s danRer4.chrM 5623 198 + 16596 TAACATCCGCGGCATTCCTTACTTTAAAAGTATTA-TC-----AG-CCACAAAAATT---AACACCCTAACAACGACCTGACCGAAAAGCCCAATCCTGGCAGCAATTGCTACTTTAGTTATATTATCACTGGGAGGACTTCCCCCACTGA----------CGGGATTCATACCAAAATGATTAATCCTACAAGAGTTAACGAAACAAGACCTACCAG
|
|
873
|
+
i danRer4.chrM C 0 C 0
|
|
874
|
+
|
|
875
|
+
a score=271987.000000
|
|
876
|
+
s mm8.chrM 4742 205 + 16299 TTATAGCAACACTCATAGCAATAATAGCTCTACTAAACCTATTCTTTTATACTCGCCTAATTTATTCCACTTCACTAACAATATTTCCAA---CCAACAATAACTCAAAAATAATA-ACTCACCAAACAAAAACTAAACCCAACCTA---ATATTTTCCACC--CTAGCTATCATAAGCACAATA---------ACCCTACCCCTAGC-------CCCCC-------AACTAATTAC
|
|
877
|
+
s rn4.chrM 4720 205 + 16300 CCCTATCAACACTAATAGCTATCATAGCCCTATTAAGCCTATTCTTCTATACTCGACTAATTTACTCTATATCCCTCACCACATTCCCAA---CCAACAACAACTCCAAAATAATC-TCCCACCACCAAAACCCAAAACATAATTTT---ATCCTCCCAACC--CTCACAGTATTAAGTACCCTA---------ACCCTACCGCTTTC-------CTCCC-------AACTAATCAC
|
|
878
|
+
i rn4.chrM C 0 C 0
|
|
879
|
+
s oryCun1.scaffold_140182 4897 219 + 20791 TTTTACCCACCGCTATAGCCATGCTTGCCCTCCTAAATCTATATTTTTATATACGCCTTATCTATTCTTCCTCACTAACTATATTCCCTA---CCACCAACAATCTAAAAATAAAA-TGACAATTTGAATCAACAAAACGCATACCC---CTCATCACTCCA--CTAATTATTTTATCAACCATA---------CTCCTCCCCCTCACACCAGCACTCTCAGTATTAAATTAGCTTT
|
|
880
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
881
|
+
s hg18.chrM 5299 211 + 16571 TCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCA---TATCTAACAACGTAAAAATAAAA-TGACAGTTTGAACATACAAAACCCACCCCA---TTCCTCCCCACA--CTCATCGCCCTTACCACGCTA---------CTCCTACCTATCTC-------CCCTT-TTATACTAATAATCTT
|
|
882
|
+
i hg18.chrM C 0 C 0
|
|
883
|
+
s panTro2.chrM 4716 211 + 16554 TCATCCCCACCATCATAGCCATCATCACTCTCCTTAACCTCTATTTCTACCTACGCCTAATCTACTCCACCTCAATTACACTACTTCCCA---TATCTAATAACGTAAAAATAAAA-TGACAATTCGAACATACAAAACCCACCCCC---TTCCTCCCTACA--CTCATCACCCTTACCACACTG---------CTTCTACCCATCTC-------CCCCT-TCATACTAATAATCTT
|
|
884
|
+
i panTro2.chrM C 0 C 0
|
|
885
|
+
s rheMac2.chr5 34440693 211 - 182086969 TTACCCCAATCATTACAGCCATCATAACCCTACTCAACCTGTACTTTTACATACGCCTAGTCTATTCCTTCTCAGTAATACTATTCCCCT---CATCTAACAATATGAAAATAAAA-TGACAATTTGGAAACACAAAACCCATACTA---CTTTTCCCCCAG--CTTGTCATCTCTTCTACCCTC---------CTCTTATCCATCTC-------TCCAT-TAATATTAAATATAAC
|
|
886
|
+
i rheMac2.chr5 C 0 C 0
|
|
887
|
+
s bosTau2.chrM 5094 211 + 16338 TTCTACCCACTTTCATAGCAATCACAGCTCTACTAAACTTATATTTTTATATACGACTCACGTATTCTACCACACTAACAATATTTCCCT---CCACAAACAACATAAAAATAAAA-TGACAATTTCCCCTTATGAAAAAAATAACT---TTTCTACCAACA--ATAGTCGTATTATCTACCATA---------ATACTACCACTCAC-------GCCAA-TACTATCAGTGTTAGA
|
|
888
|
+
i bosTau2.chrM C 0 C 0
|
|
889
|
+
s canFam2.chrM 4742 211 + 16727 TTATTCCAACACTAATGGCTATCACCGCTCTACTTAACTTATATTTCTACCTGCGACTCACATATAGCACCGCACTTACCATATTTCCAT---CCACAAACAACATAAAAATAAAA-TGACAGTTCGAATACACAAAAAAGGCAACC---CTATTACCCCCC--TTAATTATTACCTCAACTATA---------CTACTCCCACTAAC-------ACCTA-TATTATCAGTCTTGGA
|
|
890
|
+
i canFam2.chrM C 0 C 0
|
|
891
|
+
s dasNov1.scaffold_23239 8556 211 - 16977 TACTACCAACAACAATAGCCATTATGGCACTACTGAACCTCTATTTCTACATACGACTTATCTACTCAACATCACTCACAATATTCCCAA---CGACCAATAACAACAAAATAAAA-TGAAAATACAAAACACAAAATTTTATCCCC---CTATCACCAACA--TTAATTACACTATCCACAATA---------CTCATCCCCCTCAC-------TCCAA-TAATATTAATCTTAAA
|
|
892
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
893
|
+
s loxAfr1.scaffold_36650 7741 211 + 16266 TCATACCACTAACCATGGCCATTATAGCATTACTAAACATGTACTTCTACATACGACTAATCTACTACTCATCACTAACAATCCTACCAT---CTACAAATAATATGAAAATAACC-TGACGATTTACTAATACTAAACACACAATA---ACATTACCCACC--CTAATCACCCTATCTAACATA---------CTACTTCCCCTAAC-------CCCAA-TAATTTCAATGCTAGA
|
|
894
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
895
|
+
s echTel1.scaffold_181343 4108 211 + 18297 CCATAACACTAACAATATCTATCCTAGCCCTCTTGAATCTCTTCTTTTATTTACGCTTAATTTATGCATCCTCACTCACCCTGTTCCCGA---CAAGTAGTAATCTAAAATTCAAA-TGGAAA---ATCAATACCCCAAACAAAATATATTTTTTACCAACA--ATAGTCTCAATTTCACTACTT---------TTCCTTCCTGTCTC-------CCCAA-TAATTCTTATATTAAA
|
|
896
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
897
|
+
s monDom4.chrUn 117156165 211 + 174229318 CCCTAGCAACAGCACTAGCATTATCCGCACTACTAAACCTATTCTTTTATATACGAATTATTTATTTATCAACACTTACCATAGCACCGT---CCATTAATAACTCAAAAATACAA-TGAACTCTTCTACCCCCAAAAACACTCACA---CTCATTCCAACA--CTGACAATAATCTCATTACTA---------TTCTTACCTCTTAC-------CCCTA-TATTTATTGTACTCAC
|
|
898
|
+
i monDom4.chrUn C 0 C 0
|
|
899
|
+
s galGal2.chrM 6069 208 + 16775 CAATAGCCACAATCATCACAATACTATCACTCCTAAGCCTATTCTTCTACCTCCGACTTGCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGA-CGA--------ACTAACAAAACCCTAAACA---CCCCCACCGCCATTCTAACTGCGCTATCAACCACC---------CTATTGCCCCTTTC-------CCCCC-TAATTATTACCATACT
|
|
900
|
+
i galGal2.chrM C 0 C 0
|
|
901
|
+
s tetNig1.chrUn_random 103514604 205 + 171761319 CAACAGCCACCCTGGCAGCACTCAGCGCCCTACTAAGCCTCTACTTCTATCTTCGCCTCTCCTACGCCATAACCCTAACAATCGCCCCCA---ACAAC-TTAACAGGGACCCTCCCATGACGTACCCAAACAACCCAACCAAACATG---ATAACCGCCACC--ATAACAGCCTCTTCAATCCTT---------CTCCTCCCCATGAC-------CCCTG-GAATTCTTAC------
|
|
902
|
+
i tetNig1.chrUn_random C 0 N 0
|
|
903
|
+
s danRer4.chrM 5821 205 + 16596 CCACAGCTACTATCATGGCGCTTACCGCCCTCCTAAGCTTATTTTTTTACCTACGTCTATGTCATGCAATAACATTAACGACTTCACCAA---ACACTATCAATTCAGCCCCTCAC-TGACGGGTACAAACGACCCA---AAAC-------TCACTAC--CC--CTAACAATCTCTGTTACTGTTACTATAGGACTTTTACCACTGAC-------CCCAG-CCATCTTAAT------
|
|
904
|
+
i danRer4.chrM C 0 I 9
|
|
905
|
+
e xenTro2.scaffold_96 2673319 6355 - 2855184 I
|
|
906
|
+
|
|
907
|
+
a score=105153.000000
|
|
908
|
+
s mm8.chrM 4947 33 + 16299 CTAGAAG---------TTTAGGATATA-CT------AGTCCGCGAGC--CT
|
|
909
|
+
s rn4.chrM 4925 32 + 16300 ATAGAAG---------TTTAGGATATA-C-------AGTTCAAGAGC--CT
|
|
910
|
+
i rn4.chrM C 0 C 0
|
|
911
|
+
s oryCun1.scaffold_140182 5116 32 + 20791 AAAGGAG---------TTTAGGTTACA-C-------AGACCAAGAGC--CT
|
|
912
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
913
|
+
s hg18.chrM 5510 34 + 16571 ATAGAAA---------TTTAGGTTAAA-TA-----CAGACCAAGAGC--CT
|
|
914
|
+
i hg18.chrM C 0 C 0
|
|
915
|
+
s panTro2.chrM 4927 34 + 16554 ATAGAAA---------TTTAGGTTAAG-CA-----CAGACCAAGAGC--CT
|
|
916
|
+
i panTro2.chrM C 0 C 0
|
|
917
|
+
s rheMac2.chr5 34440904 33 - 182086969 TTAGAAA---------TTTAGGTTAAA-TA------AGACCGAGGAC--CT
|
|
918
|
+
i rheMac2.chr5 C 0 C 0
|
|
919
|
+
s bosTau2.chrM 5305 32 + 16338 ATAGGAA---------TTTAGGTTAAA-C-------AGACCAAGAGC--CT
|
|
920
|
+
i bosTau2.chrM C 0 C 0
|
|
921
|
+
s canFam2.chrM 4953 33 + 16727 CTAGGAG---------TTTAGGTTAGACC-------AGACCAAGAGC--CT
|
|
922
|
+
i canFam2.chrM C 0 C 0
|
|
923
|
+
s dasNov1.scaffold_23239 8767 33 - 16977 CTAGGGA---------TTTAGGTTAGA-CA------AGACCAAGAGC--CT
|
|
924
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
925
|
+
s loxAfr1.scaffold_36650 7952 32 + 16266 ATAGGAA---------TTTAGGTTAAA-C-------AGACCAAGAGC--CT
|
|
926
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
927
|
+
s echTel1.scaffold_181343 4319 33 + 18297 TTAGGGG---------GTTAGGTTAAATT-------AGACCAAGAGC--CT
|
|
928
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
929
|
+
s monDom4.chrUn 117156376 43 + 174229318 ATAAGAATTACAAGCTTTTATCTTGCA-T-------ACTTCGAACGCAAAT
|
|
930
|
+
i monDom4.chrUn C 0 C 0
|
|
931
|
+
s galGal2.chrM 6277 39 + 16775 ATAGAAA---------CTTAGGATTAA-CTGTCACCAAACCAAAGGC--CT
|
|
932
|
+
i galGal2.chrM C 0 C 0
|
|
933
|
+
s danRer4.chrM 6035 33 + 16596 ATAGAGA---------CTTAGGATAAC-CT------AGACCAAGAGC--CT
|
|
934
|
+
i danRer4.chrM I 9 C 0
|
|
935
|
+
e xenTro2.scaffold_96 2673319 6355 - 2855184 I
|
|
936
|
+
|
|
937
|
+
a score=2531764.000000
|
|
938
|
+
s mm8.chrM 4980 575 + 16299 TCAAAGCCCTAAGA--AAAC---ACA-CAAGTTTAACTTCTG--------A------------TAAGGACTGTAAGACTTCA-TC--CTACATCTATTGAA--TGCAAATCAAT---------TGCTTTA-------AT-TAAGCTAAGACCTC--------AA-CTAGATTGGCAGGAATTAAA--CCTACG-AAA---ATTTAGTTAACAGCTAAATAC-CCTA----T-TACTGGCTTCAATCTA-CTTCTACC--GCCG--A--A------AAAAAAA--AATGGCGGTA-----GAAGTCTTAGTA-GAGAT--TT-CTCTACACCTTCGAAT-----------------TTGCAATTCGACATGA-ATAT---CACCTT----AAGACCTCT-------------------GGTAAAAAGA--GGATTTAAACCTCTGTGTTTAGATTTACAGTCTAATGCT---T----ACTCAGCCATTTTA----------------------------------CC-----------TATG---TTCATTAATCGTTGATTATTCTCAACCAATCACAAAGATATCGGAACCCTCTATCTACTATTCGGAGCCTGAGCGGGAATAGTGGGTACTGCACTAAGTATTTTAATTCGAGCAGAATTAGGTCAACCAGGTGCACTTTTAGGAGATGACCAAATTTACAATGTTATCGTAACTGCCCATGCTTTTGTTATAATTTTCTTCATAGTAATACCAATAATAATTGGA
|
|
939
|
+
s rn4.chrM 4957 579 + 16300 TCAAAGCCCTTAGA--AAAC---AAA-CAAGTTTAACTTCTG--------A------------TAAGGACTGTAAGACTATA-TC--TTACATCTGTTAAA--TGCAAATCAAC---------TGCTTTA-------AT-TAAGCTAAATCCTC--------AA-CTAGATTGGAAGGAATCAAATTCCTACG-AAA---ATTTAGTTAACAGCTAAATAC-CCTA---CT-TACTGGCTTCAATCTA-CTTCTCCC--GCCT--A--T------CAGAAAA--GA-GGCGGGA-----GAAGCCTTAGTA-GAGGAGATT-CTCTACACCTTCGAAC-----------------TTGCAATTCGACATGA-TAAT---CACCTT----AAGGCTTTT------------------TGGTAAAAAGG--GGGCTCAA-CCCCTGTCTTTAGATTTACAGTCTAATGCT---T----ACTCAGCCATTTTA----------------------------------CC-----------TATG---TTCGTAAACCGTTGACTCTTTTCAACTAACCACAAAGATATCGGAACCCTCTACCTATTATTTGGAGCCTGAGCAGGAATAGTAGGGACAGCTTTGAGTATTCTAATTCGAGCTGAACTAGGACAGCCAGGCGCACTCCTAGGAGATGACCAAATCTATAATGTCATCGTCACAGCCCATGCATTCGTAATAATTTTCTTTATAGTAATACCTATAATAATTGGA
|
|
940
|
+
i rn4.chrM C 0 C 0
|
|
941
|
+
s oryCun1.scaffold_140182 5148 581 + 20791 TCAAAGCTCTAAGC--AAGT---AGATCATACTTAACCCCTG--------CT-----------TAAGGACTGCAAA--TTAA-CT--TTACATCTCCTGAA--TGCAAACCAGG---------TGCTTTA-------AT-TAAGCTAAATCCTC-----------CTAGATTGGTGGGCTCCAAC--CCCACG-AAG---CTTTAGTTAACAGCTAAATAC-CCTAG--TC-AACTGGCTTCAACCTA-CTTCTCCC--GCCGTAA--G------AAAAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GAGTT--GA-AGCTGCTTCTTTGAAT-----------------TTGCAATTCAATATGT-GAGTACCCACCTC----AGGGCTT---------------------GGTAAAAAGA--GGGCTTAA-CCTCTGTCTTTAGATTTACAGTCTAATACC---T----ACTCGGCCATTTTA----------------------------------CCCTT-----ACTTATG---TTCGTCAATCGTTGACTTTTCTCTACCAACCACAAAGACATCGGCACTCTTTATCTCCTATTTGGAGCTTGAGCTGGGATGGTGGGAACAGCCCTTAGCCTGCTAATTCGAGCAGAATTAGGTCAGCCAGGGACTCTACTCGGGGATGATCAAATCTATAATGTAATCGTCACCGCACATGCCTTTGTAATAATCTTCTTTATAGTCATACCTAT-ATAATTGGA
|
|
942
|
+
i oryCun1.scaffold_140182 C 0 C 0
|
|
943
|
+
s hg18.chrM 5544 588 + 16571 TCAAAGCCCTCAGT--AAGT---TGC-AATACTTAATTTCTGCAACAG--C------------TAAGGACTGCAAAACCCCA-CT--CTGCATCAACTGAA--CGCAAATCAGC---------CACTTTA-------AT-TAAGCTAAGCCCTT---------A-CTAGACCAATGGGACTTAAA--CCCACA-AAC---ACTTAGTTAACAGCTAAGCAC-CCTAA--TC-AACTGGCTTCAATCTA-CTTCTCCC--GCCG--C--C------GGGAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GGTTT--GA-AGCTGCTTCTTCGAAT-----------------TTGCAATTCAATATGA-AAAT---CACCTC----GGAGCT----------------------GGTAAAAAG---AGGCCTAA-CCCCTGTCTTTAGATTTACAGTCCAATGCT---T---CACTCAGCCATTTTA----------------------------------CCTCACCCCCACTGATG---TTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAATACCCATCATAATCGGA
|
|
944
|
+
i hg18.chrM C 0 C 0
|
|
945
|
+
s panTro2.chrM 4961 587 + 16554 TCAAAGCCCTCAGC--AAGT---TAC-AATACTTAATTTCTGCAACAA--C------------TAAGGACTGCAAAACCCCA-CT--CTGCATCAACTGAA--CGCAAATCAGC---------CACTTTA-------AT-TAAGCTAAGCCCTT---------A-CTAGATTAATGGGACTTAAA--CCCACA-AAC---ATTTAGTTAACAGCTAAACAC-CCTAA--TC-AACTGGCTTCAATCTA-CTTCTCCC--GCCG--C--A------AGAAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GGTTT--GA-AGCTGCTTCTTCGAAT-----------------TTGCAATTCAATATGA-AAAT---CACCTC----AGAGCT----------------------GGTAAAAAG---AGGCTTAA-CCCCTGTCTTTAGATTTACAGTCCAATGCT---T---CACTCAGCCATTTTA----------------------------------CCCCA-CCCTACTGATG---TTCACCGACCGCTGACTATTCTCTACAAACCACAAAGATATTGGAACACTATACCTACTATTCGGTGCATGAGCTGGAGTCCTGGGCACAGCCCTAAGTCTCCTTATTCGGGCTGAACTAGGCCAACCAGGCAACCTCCTAGGTAATGACCACATCTACAATGTCATCGTCACAGCCCATGCATTCGTAATAATCTTCTTCATAGTAATGCCTATTATAATCGGA
|
|
946
|
+
i panTro2.chrM C 0 C 0
|
|
947
|
+
s rheMac2.chr5 34440937 590 - 182086969 TCAAAGTCCTTAGT--AAGTA--AGT-TACTCTTAATTTCTGTAACAGATC------------TAAAGATGGCAAGATGCTA-TT--CTGCATCAATTGAA--CGCAAATCAAC---------CACTTTG-------AT-TAAGCTAAGCCCTT---------A-CTAGATTTATGGAATTCAAA--CCCACG-AATAAAATTTAGTTAACGGCTAAGCAC-CCTAA--TC-AACTGGCTTCAATCTA-CCCCCGCC--GCCG--T--T------GGGGGAG--AA-AGGCAGA-----GAAGACCCAGCA-GGATT--GA-AGCTTCTCCTTTGACT-----------------TTGCAATTCAACATGAGAAAT---CACCTC----AGGGCT----------------------GCTAAAAAGC--AGCCTTGA-CCTCTGTCTTTAGATTTACAGTCTAATGCT---T----ACTCAGCCATTTTA----------------------------------CCTTTTCCCCACTTATG---TTCATCAATCATTGATTGTTTTCAGCTAACCACGAAGATATCGGAACACTATACCTGCTAT--GGCGC---AGTGGAGATAGTAGGCACCGCCTTAAGCCTTCTAATTCCAGCAGAACTAGGCCAACCAGGAACTCTGCTAGGAGATGATCAGATCTACAATGTTATTGTTACCGCTCACACATTCGTTATAATTTTATTTATGATAACACTAATCATGATTGGG
|
|
948
|
+
i rheMac2.chr5 C 0 C 0
|
|
949
|
+
s bosTau2.chrM 5337 577 + 16338 TCAAAGCCCTAAGC--AAGTA--CAA-TTTACTTAATTCCTG--------A------------TAAGGATTGCAAGACTACA-CC--TTACATCAATTGAA--TGCAAATCAAC---------CACTTTA-------AT-TAAGCTAAATCCTC---------A-CTAGACTGGTGGGCTCCACC--CCCACG-AAA---CTTTAGTTAACAGCTAAACAC-CCTAG--CT-AACTGGCTTCAATCTA-CTTCTCCC--GCCG--CA-A------GAAAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GAATT--GA-AGCTGCTTCTCTGAAT-----------------TTGCAATTCAACGTGT-AAAT--TCACCAC----AGGGCTT---------------------GGTAAAAAGA--GGAGTCAAACCTCTATCTTTAGATTTACAGTCTAATGCT---T---TGCTCAGCCATTTTA----------------------------------CC-----------CATG---TTCATTAACCGCTGACTATTCTCAACCAACCATAAAGATATTGGTACCCTTTATCTACTATTTGGTGCTTGGGCCGGTATAGTAGGAACAGCTCTAAGCCTTCTAATTCGCGCTGAATTAGGCCAACCCGGAACTCTGCTCGGAGACGACCAAATCTACAACGTAGTTGTAACCGCACACGCATTTGTAATAATCTTCTTCATAGTAATACCAATCATAATTGGA
|
|
950
|
+
i bosTau2.chrM C 0 C 0
|
|
951
|
+
s canFam2.chrM 4986 590 + 16727 TCAAAGCTCTAAGC--AAGTG--CTA-CACACTTAACCCCTG--------ATCAAATCACCTCTAAGGGCTGCAAGAATCTA-TC--TTACATCAATTGAA--TGCAAATCAAA---------CACTTTA-------AT-TAAGCTAAGCCCTC---------C-CTAGATTGGTGAGCTTCTAC--CTCACG-AAA---TTTTAGTTAACAGCTAAATAC-CCTAG---T-AACTGGCTTCAATCTACCTTCTCCC--GCCG--CGTA------GAAAAAA--AA-GGCGGGA-----GAAGCCCCGGCG-GCGTC--TA-GGCTGCTTCTTTGAAT-----------------TTGCAATTCAATATGA-AAAT--TCACCAC----GGAGCTT---------------------GGCAAAAAGA--GGACTTAAACCCCTATCTTTAGATTTACAGTCTAATGCT---T---TTATCAGCCATTTTA----------------------------------CC-----------TATG---TTCATTAACCGATGACTGTTCTCCACTAATCACAAGGATATTGGTACTTTATACTTACTATTTGGAGCATGAGCCGGTATAGTAGGCACTGCTTTGAGCCTCCTCATCCGAGCCGAACTAGGTCAGCCCGGTACTTTACTAGGTGACGATCAAATTTATAATGTCATCGTAACCGCCCATGCTTTCGTAATAATCTTCTTCATAGTCATGCCCATCATAATTGGG
|
|
952
|
+
i canFam2.chrM C 0 C 0
|
|
953
|
+
s dasNov1.scaffold_23239 8800 579 - 16977 TCAAAGCCCTTAGC--AAGTA--AAA-ATTACTTAATCCCTG--------ACG----------TAAGGACTGCAAGATTTAG-CC--CCACATCTCCTGAA--CGCAAATCAGG---------CACTTTA-------AT-TAAGCTAAGTCCTC---------T-CTAGACTGGTGGGCTCCAAC--CCCACG-AAA---TTTTAGTTAACAGCTAAATAC-CATAA--TC-ACCTGGCTTCAATCTA----TTCCC--ACCT--C--A------AAAACAA--GC-CAAAGGAATCATAAAGCCCTGGCA-GAGTT--TACAGCTGCTTCTCTGAAC-----------------TTGCAATTCAA-ATAG-TATT--------C----AAGGCTTAT--------------TTAATGGTAAAAAAA--GGACTTCA-CCTTTGTCTTTAGATTTACAGTCTAATGCT---T----ACTCAGCCATTTTA----------------------------------CC-----------CATG---TTCATTACCCGTTGACTATTTTCAACAAACCACAAAGATATTGGAACTCTATATTTACTATTTGGCGCCTGGGCTGGAATAGTAGGCACCGCCCTAAGTCTACTAATTCGTGCCGAGCTTGGCCAACCAGGCACATTACTAGGAGACGATCAAATTTATAATGTAATTGTTACCGCCCATGCATTCATCATAATTTTCTTTATAGTAATACCAATCATGATCGGG
|
|
954
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
955
|
+
s loxAfr1.scaffold_36650 7984 579 + 16266 TCAAAGCCCTAAGT--AAGTA--CAT-TATACTTAACTCCTG----AA--A------------TAAGGACTGCAAGATACTA-TC--TTACATCAACTGAA--TGCAAATCAGA---------CGCTTTA-------AC-TAAACTAAGCCCT----------T-CTAGATTGGAGGGCTTCAAT--CCCACGAAAT---TCTTAGTTAACAACTAAACAC-CCTAG--CT-AACTGGCTTCAATCTA-CTTCTCCC--GCCT--T--GAGGGAGGGGGAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GAATT--GA-AGCTGCTTCTTCGAAT-----------------TTGCAGTTCGACATGT-TTAC--AC-TTTC----AAGGCCT---------------------GGCAAAAA----GAGATTAC-TCTCTGTGGTTAGATTTACAGTCTAATGCC---T----ACTCAGCCATTTTA----------------------------------CC-----------TATG---TTTGCTAACCGCTGACTATATTCAACGAACCACAAAGATATCGGAACACTGTATCTATTATTTGGTGCTTGAGCTGGTATAGTAGGGACTGCTTTTAGTATCCTAATTCGGGCAGAACTAGGCCAACCAGGCTCTCTTCTTGGAGATGATCAAATCTACAATGTTATTGTCACAGCACACGCCTTCGTAATAATCTTCTTTATAGTCATGCCAATTATAATTGGA
|
|
956
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
957
|
+
s echTel1.scaffold_181343 4352 619 + 18297 TCAAAGCTCTAAGC--AAGTA--AAC-AATACTTACCCTCTG-----A--A------------TAAGGACTGCAAGACTGTACTC--TTACATCAATTGGA--CGCAAACCAAA---------CACTTTA-------ACTTAAGCTAAATCC-----------T-CTAGATTGATGGGGTTTAAA--CCCATG-AAC---TATTAGTTAACAGCTAATTAC-CCTAC--CTCAACTGGCTTCAATCTA-C-TCTCCC--GCCT--T--T-GAATAGAAAAAA--AA-GGCGGGA-----GAAGCCCCGGCA-GATTT--GA-AGCTGCTTCTTCGAAT-----------------TTGCAATTCAATATGA-ATAC--TCACTTC----AGAGCCT---------------------AGTAAAAAGGAGGAGCCTCC-CTCCTGTCTTTAGATTTACAGTCTAATGCCTATT----ACTCAGCCATTTTACTTTCATATATTAGAACTTCCTTCTATACCCTTTCT-----------TATG---TTCATAAACCGTTGACTATACTCTACTAACCATAAAGACATTGGAACCCTCTACTTATTATTCGGAGCTTGAGCTGGCACAGTAGGAACTGCTCTTAGCCTCCTAATCCGTGCTGAACTCGGACAGCCAGGAGCCCTACTAGGTGATGATCAAATCTATAACGTAATCGTAACTGCACACGCCTTCGTTATAATTTTCTTTATAGTTATACCCATTATGATTGGG
|
|
958
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
959
|
+
s monDom4.chrUn 117156419 635 + 174229318 CGAACGCTTTAATT--AAGC---TAA-ACCCTTAAACTACTA--------T------------TTAAACCTCGGTAGCTTTA-CTAACTAC-TTTTTTGAATTTGCAATTCAACGTATTAATATACTTCAAGATTAGAT-TATCCTAAAGGCTTAGGATAAAAT-CTAGACCGAAGG----------CCTTCA-AAG---CCTTAAGCAGGTGATAAATCCACCTAGCCTT-TACTAATTAC-ATCAA-GCTCTCCC--GCCT--TG-G------AGAAAAA--AA-GGCGGGA-----GAGCCCCGGGCA-GCCCT--ATTAATTGTTTCATAAACTAAACTGGTGGGTATTTATCCCACTCTATCTTAA-TTAA---CAGTTA----AGCGCCTGTCTTTCGGCCTCAGTTTAGTGGTAAAAAGA--GATGTTAT-TCTCTGTCTTTGAATTTACAGTTCAATGCC---T---AGCTCAGCCATTTTA----------------------------------CC-----------TATG---TTCATTAATCGTTGACTCTTCTCAACTAACCATAAAGATATTGGTACTTTATATTTATTATTTGGTGCTTGAGCAGGAATAGTTGGAACCGCACTAAGCCTCCTAATTCGAGCAGAATTAGGCCAACCAGGGACTCTAATTGGTGATGATCAAATTTATAACGTAATCGTAACTGCCCACGCTTTCGTTATAATTTTCTTCATAGTAATACCTATCATGATTGGA
|
|
960
|
+
i monDom4.chrUn C 0 C 0
|
|
961
|
+
s galGal2.chrM 6316 559 + 16775 TCAAAGCCTTAAAT--AAGAGTTAAA-CTCTCTTAGTTTCTG-CCCAA--C------------TAAGACCAACAGGACATTA-AC--CTGTATCTCCTGAA--TGCAAATCAGA---------CGCTTTA-------AT-TAAGCTAAGGCCTC-------TAC-CTAGACAGATGGGCTTCGAT--CCCATA-CAA---TTTTAGTTAACAGCTAAATGC-CAACA--CC-AATTGGCTTCTGCCTA-----------------C--A------------------------------GA--CCCCGGCA-CACTT--TA-GTGTACATCAACGAGT-----------------TTGCAACTCATTATGA-ACTT---CACTAC----AGAGTC----------------------GATAAGAAGA--GGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCT---TCAACACTCAGCCATCTTA----------------------------------CC-----------TGTGACCTTCATCAACCGATGATTATTCTCAACCAACCACAAAGACATTGGCACTCTTTACCTAATTTTCGGCACATGGGCGGGCATAGCCGGCACAGCACTTAGCCTTCTAATTCGCGCAGAACTAGGACAGCCCGGAACTCTCTTAGGAGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTCGTCATAATCTTCTTTATAGTTATACCCATCATGATCGGT
|
|
962
|
+
i galGal2.chrM C 0 C 0
|
|
963
|
+
s tetNig1.chrUn_random 161619026 580 + 171761319 TCAAAGCCCTCAGCGGGAGTG--AAA-ATCTCCCAGTCCCTG--------A------------TAAGACTTGCGGGACACTA-CC--CCACATCTCCTGCA--TGCAAAACAGA---------CACTTTA-------AT-TAAGCTAAAGCCTT---------ACCTAGACAGGCAGGCCTCGAT--CCTACA-AAC---TCTTAGTTAACAGCTAAGCGC-TCAAA--CC-AGCGAGCATCTATCTA-CCTTTCCCCGCCTG--T--C------AAAACAA--AA-GGCGGGG-----AAAGCCCCGGCA-GACGT--CA-ATCTGCTTCTTTAGAT-----------------TTGCAATCTAACATGT---AA---CACCCC----AGGGCTT---------------------GGTAGAAAGA--GGAATTTAACCTCCGTACGTGGGGCTACAATCCACCGCT---T-AACACTCAGCCATCCTA----------------------------------CC-----------TGTG---GCAATCACACGCTGATTTTTCTCAACCAACCATAAAGACATCGGCACCCTCTACCTAGTATTTGGTGCCTGAGCCGGAATAGTGGGAACGGCCCTTAGCCTCCTCATCCGAGCTGAACTTAGCCAACCAGGCGCACTCTTGGGTGATGACCAGATTTATAATGTAATCGTCACAGCCCATGCATTTGTAATAATTTTCTTTATAGTAATGCCAATCATGATTGAA
|
|
964
|
+
i tetNig1.chrUn_random N 0 N 0
|
|
965
|
+
s danRer4.chrM 6068 584 + 16596 TCAAAGCTCTCAGTAGAAGTG--AAA-ATCTTCTAGTCTCTG--------A------------TAGGACTTAC-AGACGTTA-CT--CCGCATCTTCTAAA--TGCAAATCAGA---------TATTTTA-------AT-TAAACTAAAGCCCT---------A-CTAGATGGGAAGGCCTCGAT--CCTACA-AAA---TCTTAGTTAACAGCTAAGCGC-CCAAG--CC-AGCGAGCATCCATCTA-CTTTTCCC--GCCG--T--T------GAACCCGGTAA-GGCGGGA-----AAAGCCCCGGCAGGAGGT--TT-ACCTGCGTCTTCAGAT-----------------TTGCAATCTGATATGT---AT---CATCACCACGAGGCCAT---------------------GGTAGAAAAA--GGACTCAAACCTCTGTCCGCGGAGCTACAATCCGCCGCC---TAAACACTCGGCCACCCTA----------------------------------CC-----------TGTG---ACAATCACACGTTGATTTTTCTCAACTAATCATAAAGACATTGGCACCCTGTATCTAGTATTTGGTGCTTGAGCCGGAATAGTAGGGACCGCATTAAGCCTCTTAATCCGAGCTGAACTTAGCCAACCAGGAGCACTTCTTGGTGATGATCAAATCTATAATGTTATTGTTACTGCCCATGCTTTTGTAATAATTTTCTTTATAGTAATACCCATTCTTATTGGG
|
|
966
|
+
i danRer4.chrM C 0 C 0
|
|
967
|
+
e xenTro2.scaffold_96 2673319 6355 - 2855184 I
|
|
968
|
+
|
|
969
|
+
a score=799335.000000
|
|
970
|
+
s mm8.chrM 5555 131 + 16299 GGCTTTGGAAACTGACTTGTCCCACTAATAATCGGAGCCCCAGATATAGCATTCCCACGAATAAATAATATAAGTTTTTGACTCCTACCACCATCATTTCTCCTTCTCCTAGCATCATCAATAGTAGAAGC
|
|
971
|
+
s rn4.chrM 5536 131 + 16300 GGCTTCGGAAACTGACTTGTACCACTAATAATTGGAGCCCCTGATATAGCATTCCCACGAATAAATAACATAAGCTTTTGACTGCTTCCTCCATCATTTCTACTCCTTTTAGCATCCTCCATAGTAGAAGC
|
|
972
|
+
i rn4.chrM C 0 C 0
|
|
973
|
+
s oryCun1.scaffold_140182 5729 131 + 20791 GGCTTCGGGAACTGGCTTGTCCCCCTGATAATTGGGGCTCCTGACATAGCCTTCCCCCGAATAAATAATATGAGCTTCTGACTTCTCCCCCCTTCATTCCTTCTTCTACTAGCCTCCTCAATAGTAGAAGC
|
|
974
|
+
i oryCun1.scaffold_140182 C 0 M 264
|
|
975
|
+
s hg18.chrM 6132 131 + 16571 GGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCCCCGATATGGCGTTTCCCCGCATAAACAACATAAGCTTCTGACTCTTACCTCCCTCTCTCCTACTCCTGCTCGCATCTGCTATAGTGGAGGC
|
|
976
|
+
i hg18.chrM C 0 C 0
|
|
977
|
+
s panTro2.chrM 5548 131 + 16554 GGCTTTGGCAACTGGCTAGTTCCCTTGATAATTGGTGCCCCCGACATGGCATTCCCCCGCATAAACAACATAAGCTTCTGGCTCCTGCCCCCTTCTCTCCTACTTCTACTTGCATCTGCCATAGTAGAAGC
|
|
978
|
+
i panTro2.chrM C 0 C 0
|
|
979
|
+
s rheMac2.chr5 34441527 131 - 182086969 GTTTTCGGCAACTGGCTAGTCCCTCTGACCATTGGTTGACTGGACATGGCATCCCCCTGAATAAATAATATGATTTTCTGACTTCTCCCCCTATCTTTTCTACTCCTACTTGCGTCTTCAATAGTAGAAGC
|
|
980
|
+
i rheMac2.chr5 C 0 C 0
|
|
981
|
+
s bosTau2.chrM 5914 131 + 16338 GGATTCGGTAACTGACTTGTTCCCCTAATAATTGGTGCTCCCGATATAGCATTTCCCCGAATAAATAATATAAGCTTCTGACTCCTCCCTCCCTCATTCCTACTACTCCTCGCATCCTCTATAGTTGAAGC
|
|
982
|
+
i bosTau2.chrM C 0 C 0
|
|
983
|
+
s canFam2.chrM 5576 131 + 16727 GGCTTTGGAAACTGACTAGTGCCGTTAATAATTGGTGCTCCGGACATGGCATTCCCCCGAATAAATAACATGAGCTTCTGACTCCTTCCTCCATCCTTTCTTCTACTATTAGCATCTTCTATGGTAGAAGC
|
|
984
|
+
i canFam2.chrM C 0 C 0
|
|
985
|
+
s dasNov1.scaffold_23239 9379 131 - 16977 GGCTTCGGAAACTGATTAGTCCCATTAATAATTGGCGCGCCCGATATAGCCTTCCCACGAATAAACAACATAAGTTTCTGACTATTACCCCCTTCATTCCTACTCCTACTAGCCTCCTCTATAGTAGAAGC
|
|
986
|
+
i dasNov1.scaffold_23239 C 0 C 0
|
|
987
|
+
s loxAfr1.scaffold_36650 8563 131 + 16266 GGCTTTGGAAACTGGTTAATTCCACTTATAATTGGAGCACCTGATATAGCTTTTCCTCGAATAAACAATATGAGTTTTTGACTACTGCCTCCATCTTTCCTACTACTTTTAGCATCCTCTATAGTAGAAGC
|
|
988
|
+
i loxAfr1.scaffold_36650 C 0 C 0
|
|
989
|
+
s echTel1.scaffold_181343 4971 131 + 18297 GGATTTGGTAACTGACTGATCCCATTAATGATTGGTGCCCCTGACATAGCTTTCCCCCGAATAAATAACATAAGTTTCTGGCTCCTTCCCCCCTCTTTTCTTCTTCTGTTAGCTTCATCTATAGTTGAAGC
|
|
990
|
+
i echTel1.scaffold_181343 C 0 C 0
|
|
991
|
+
s monDom4.chrUn 117157054 131 + 174229318 GGTTTTGGTAACTGACTAGTACCACTAATAATTGGAGCACCAGATATAGCATTTCCCCGAATAAATAATATAAGTTTCTGACTACTACCACCCTCATTCCTTCTTTTACTAGCATCATCCACAGTTGAAGC
|
|
992
|
+
i monDom4.chrUn C 0 C 0
|
|
993
|
+
s galGal2.chrM 6875 131 + 16775 GGCTTCGGAAACTGACTAGTCCCACTTATAATCGGTGCCCCAGACATAGCATTCCCCCGCATAAATAACATAAGCTTCTGACTCCTCCCTCCCTCCTTCCTTCTCCTACTAGCCTCATCTACCGTAGAAGC
|
|
994
|
+
i galGal2.chrM C 0 C 0
|
|
995
|
+
s tetNig1.chrUn_random 417498 131 - 171761319 GGTTTTGGTAATTGGTTTGTTCCTTTGATGTTGGGAGCTCCAGATATAGCATTTCCAAGGTTGAACAACATTAGTTTTTGGCTTTTGCCACCTTCTTTGCTTCTATTGGTAAGTTCTTCTTTGGTAGAGGC
|
|
996
|
+
i tetNig1.chrUn_random N 0 C 0
|
|
997
|
+
s danRer4.chrM 6652 131 + 16596 GGATTTGGAAACTGACTTGTGCCACTAATGATTGGGGCCCCCGATATGGCATTTCCCCGAATAAATAATATAAGCTTCTGACTTCTTCCACCCTCATTTCTTCTTCTATTAGCTTCTTCTGGAGTTGAAGC
|
|
998
|
+
i danRer4.chrM C 0 C 0
|
|
999
|
+
e xenTro2.scaffold_96 2673319 6355 - 2855184 I
|
|
1000
|
+
|