bio-grid 0.2.3 → 0.2.4
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- data/VERSION +1 -1
- data/bio-grid.gemspec +2 -2
- data/lib/bio/grid/job.rb +2 -2
- metadata +3 -3
data/VERSION
CHANGED
@@ -1 +1 @@
|
|
1
|
-
0.2.
|
1
|
+
0.2.4
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data/bio-grid.gemspec
CHANGED
@@ -5,11 +5,11 @@
|
|
5
5
|
|
6
6
|
Gem::Specification.new do |s|
|
7
7
|
s.name = "bio-grid"
|
8
|
-
s.version = "0.2.
|
8
|
+
s.version = "0.2.4"
|
9
9
|
|
10
10
|
s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
11
11
|
s.authors = ["Francesco Strozzi"]
|
12
|
-
s.date = "2012-09-
|
12
|
+
s.date = "2012-09-24"
|
13
13
|
s.description = "A BioGem to submit jobs on a queue system"
|
14
14
|
s.email = "francesco.strozzi@gmail.com"
|
15
15
|
s.executables = ["bio-grid"]
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data/lib/bio/grid/job.rb
CHANGED
@@ -20,12 +20,12 @@ module Bio
|
|
20
20
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job_output = ""
|
21
21
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if commandline =~/<output>\.(\S+)/
|
22
22
|
extension = $1
|
23
|
-
job_output = self.options[:output]+"
|
23
|
+
job_output = self.options[:output]+"/#{Time.now.to_i}"+self.options[:name]+"_output_%03d" % (index+1).to_s + "#{self.options[:parameter_value]}"
|
24
24
|
commandline.gsub!(/<output>/,job_output)
|
25
25
|
job_output << ".#{extension}"
|
26
26
|
else
|
27
27
|
self.options[:output_folder] = true
|
28
|
-
commandline.gsub!(/<output>/,self.options[:output])
|
28
|
+
commandline.gsub!(/<output>/,"#{Time.now.to_i}"+self.options[:output]+"_#{index+1}")
|
29
29
|
job_output = self.options[:output]
|
30
30
|
end
|
31
31
|
self.instructions << commandline+"\n"
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: bio-grid
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.2.
|
4
|
+
version: 0.2.4
|
5
5
|
prerelease:
|
6
6
|
platform: ruby
|
7
7
|
authors:
|
@@ -9,7 +9,7 @@ authors:
|
|
9
9
|
autorequire:
|
10
10
|
bindir: bin
|
11
11
|
cert_chain: []
|
12
|
-
date: 2012-09-
|
12
|
+
date: 2012-09-24 00:00:00.000000000 Z
|
13
13
|
dependencies:
|
14
14
|
- !ruby/object:Gem::Dependency
|
15
15
|
name: rspec
|
@@ -114,7 +114,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
114
114
|
version: '0'
|
115
115
|
segments:
|
116
116
|
- 0
|
117
|
-
hash:
|
117
|
+
hash: 1547107514034960199
|
118
118
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
119
119
|
none: false
|
120
120
|
requirements:
|