bio-gemma-wrapper 0.92.2 → 0.97
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- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/bin/gemma-wrapper +7 -5
- metadata +3 -3
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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SHA1:
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3
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-
metadata.gz:
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4
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data.tar.gz:
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3
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+
metadata.gz: 9339be44d799349592c257f655bfe3e94ced5011
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4
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data.tar.gz: '09ec3c233405a6481bd19dade1ee03fa71362df8'
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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data.tar.gz:
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6
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metadata.gz: 13829ee7a9a78b56695a02b9c0fe8a4aeab0454b7a6887def6452351bf455e935944664976df9642e4657ef7ffad64b53c1f865f0d08e8520d0b72eac0eba5fc
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7
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+
data.tar.gz: ad92a7187e829869122030615f56354e14a44f91135b29a7f84dc869819639723dd15c6757cc0d9141cf82edcfc4acb1542d8bc9c9f61760ff1038f18fcd742b
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data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.
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1
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+
0.97
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data/bin/gemma-wrapper
CHANGED
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@@ -4,7 +4,7 @@
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4
4
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# Author:: Pjotr Prins
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# License:: GPL3
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#
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7
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-
# Copyright (C) 2017 Pjotr Prins <pjotr.prins@thebird.nl>
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7
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# Copyright (C) 2017,2018 Pjotr Prins <pjotr.prins@thebird.nl>
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8
8
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9
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USAGE = "GEMMA wrapper example:
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10
10
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@@ -35,8 +35,9 @@ USAGE = "GEMMA wrapper example:
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35
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-debug > GWA.json
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"
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38
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+
# These are used for testing compatibility
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GEMMA_V_MAJOR = 97
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39
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-
GEMMA_V_MINOR =
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40
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GEMMA_V_MINOR = 0
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basepath = File.dirname(File.dirname(__FILE__))
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$: << File.join(basepath,'lib')
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@@ -153,17 +154,18 @@ info = lambda do |*msg|
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end
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GEMMA_K_VERSION=version
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156
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-
GEMMA_K_BANNER = "gemma-wrapper #{version} (Ruby #{RUBY_VERSION}) by Pjotr Prins 2017\n"
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157
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+
GEMMA_K_BANNER = "gemma-wrapper #{version} (Ruby #{RUBY_VERSION}) by Pjotr Prins 2017,2018\n"
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info.call GEMMA_K_BANNER
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# Check gemma version
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GEMMA_COMMAND=options[:gemma_command]
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161
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-
gemma_version_header = `#{GEMMA_COMMAND}`.split("\n").grep(/Version/)[0].strip
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162
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+
gemma_version_header = `#{GEMMA_COMMAND}`.split("\n").grep(/GEMMA|Version/)[0].strip
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162
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info.call "Using GEMMA ",gemma_version_header,"\n"
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gemma_version = gemma_version_header.split(/[,\s]+/)[1]
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164
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v_version, v_major, v_minor = gemma_version.split(".")
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166
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+
info.call "Found #{gemma_version}, comparing against expected v0.#{GEMMA_V_MAJOR}.#{GEMMA_V_MINOR}"
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165
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166
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-
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168
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+
warning.call "GEMMA version is out of date. Update GEMMA to 0.#{GEMMA_V_MAJOR}.#{GEMMA_V_MINOR}!" if v_major.to_i < GEMMA_V_MAJOR or (v_major.to_i == GEMMA_V_MAJOR and (v_minor != nil and v_minor.to_i < GEMMA_V_MINOR))
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options[:gemma_version_header] = gemma_version_header
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options[:gemma_version] = gemma_version
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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name: bio-gemma-wrapper
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3
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version: !ruby/object:Gem::Version
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4
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version: 0.
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4
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version: '0.97'
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platform: ruby
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authors:
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- Pjotr Prins
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autorequire:
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bindir: bin
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cert_chain: []
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-
date:
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11
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date: 2018-02-10 00:00:00.000000000 Z
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dependencies: []
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description: GEMMA wrapper caches K between runs with LOCO support
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email: pjotr.public01@thebird.nl
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@@ -43,7 +43,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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version: '0'
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requirements: []
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rubyforge_project:
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-
rubygems_version: 2.
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+
rubygems_version: 2.6.8
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47
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signing_key:
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specification_version: 4
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summary: Cache GEMMA with LOCO
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