bio-gem 1.3.5 → 1.3.6

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Files changed (7) hide show
  1. checksums.yaml +4 -4
  2. data/.travis.yml +3 -1
  3. data/Gemfile +7 -6
  4. data/Rakefile +1 -1
  5. data/VERSION +1 -1
  6. data/bio-gem.gemspec +15 -17
  7. metadata +40 -36
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data/.travis.yml CHANGED
@@ -1,7 +1,9 @@
1
1
  language: ruby
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  rvm:
3
- - 1.9.2
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+
4
+ - 2.0.0
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  - 1.9.3
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+ # - 1.9.2
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  - jruby-19mode # JRuby in 1.9 mode
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  # - rbx-19mode # rvm install rbx -- --enable-version=1.9,1.8 --default-version=1.9
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  # - 1.8.7
data/Gemfile CHANGED
@@ -2,12 +2,13 @@ source "http://rubygems.org"
2
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  # Add dependencies required to use your gem here.
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  # Example:
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  # gem "activesupport", ">= 2.3.5"
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- gem "bundler", ">= 1.0.21"
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- gem "jeweler", :git => 'https://github.com/technicalpickles/jeweler.git'
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- gem "rdoc"
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+ gem "bundler", '~> 1.6', '>= 1.6.2'
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+ gem "jeweler", '~> 2.0', '>= 2.0.1'
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+ gem "rdoc", '~> 4.1.1', '>= 4.1.1'
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8
 
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  # Add dependencies to develop your gem here.
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  # Include everything needed to run rake, tests, features, etc.
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- group :development do
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- gem "shoulda", ">= 0"
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- end
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+ # group :development do
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+ # gem "shoulda", ">= 0"
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+ # gem 'bundler', '~> 1.6', '>= 1.6.2'
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+ # end
data/Rakefile CHANGED
@@ -24,7 +24,7 @@ Jeweler::Tasks.new do |gem|
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  # and development dependencies are only needed for development (ie running rake tasks, tests, etc)
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  #gem.version='0.0.1'
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  gem.rdoc_options << '--main' << 'README' << '--line-numbers'
27
- gem.required_ruby_version = ">= 1.9"
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+ gem.required_ruby_version = ">= 1.9.3"
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  gem.extra_rdoc_files = ['LICENSE.txt', 'README.rdoc','Tutorial.rdoc']
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  end
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data/VERSION CHANGED
@@ -1 +1 @@
1
- 1.3.5
1
+ 1.3.6
data/bio-gem.gemspec CHANGED
@@ -2,14 +2,16 @@
2
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  # DO NOT EDIT THIS FILE DIRECTLY
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  # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
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  # -*- encoding: utf-8 -*-
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+ # stub: bio-gem 1.3.6 ruby lib
5
6
 
6
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  Gem::Specification.new do |s|
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  s.name = "bio-gem"
8
- s.version = "1.3.5"
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+ s.version = "1.3.6"
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10
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  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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+ s.require_paths = ["lib"]
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  s.authors = ["Raoul J.P. Bonnal", "Pjotr Prins"]
12
- s.date = "2013-07-24"
14
+ s.date = "2014-05-20"
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  s.description = "Biogem is a software generator for those bioinformaticans who want to start coding an application or a library for using/extending BioRuby core library and sharing it through rubygems.org .\n The basic idea is to simplify and promote a modular approach to bioinformatics software development"
14
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  s.email = "ilpuccio.febo@gmail.com"
15
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  s.executables = ["biogem"]
@@ -69,30 +71,26 @@ Gem::Specification.new do |s|
69
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  s.homepage = "http://github.com/helios/bioruby-gem"
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  s.licenses = ["MIT"]
71
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  s.rdoc_options = ["--main", "README", "--line-numbers"]
72
- s.require_paths = ["lib"]
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- s.required_ruby_version = Gem::Requirement.new(">= 1.9")
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- s.rubygems_version = "2.0.0"
74
+ s.required_ruby_version = Gem::Requirement.new(">= 1.9.3")
75
+ s.rubygems_version = "2.2.1"
75
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  s.summary = "Biogem is a software generator for Ruby in bioinformatics"
76
77
 
77
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  if s.respond_to? :specification_version then
78
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  s.specification_version = 4
79
80
 
80
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  if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
81
- s.add_runtime_dependency(%q<bundler>, [">= 1.0.21"])
82
- s.add_runtime_dependency(%q<jeweler>, [">= 0"])
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- s.add_runtime_dependency(%q<rdoc>, [">= 0"])
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- s.add_development_dependency(%q<shoulda>, [">= 0"])
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+ s.add_runtime_dependency(%q<bundler>, [">= 1.6.2", "~> 1.6"])
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+ s.add_runtime_dependency(%q<jeweler>, [">= 2.0.1", "~> 2.0"])
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+ s.add_runtime_dependency(%q<rdoc>, [">= 4.1.1", "~> 4.1.1"])
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  else
86
- s.add_dependency(%q<bundler>, [">= 1.0.21"])
87
- s.add_dependency(%q<jeweler>, [">= 0"])
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- s.add_dependency(%q<rdoc>, [">= 0"])
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- s.add_dependency(%q<shoulda>, [">= 0"])
86
+ s.add_dependency(%q<bundler>, [">= 1.6.2", "~> 1.6"])
87
+ s.add_dependency(%q<jeweler>, [">= 2.0.1", "~> 2.0"])
88
+ s.add_dependency(%q<rdoc>, [">= 4.1.1", "~> 4.1.1"])
90
89
  end
91
90
  else
92
- s.add_dependency(%q<bundler>, [">= 1.0.21"])
93
- s.add_dependency(%q<jeweler>, [">= 0"])
94
- s.add_dependency(%q<rdoc>, [">= 0"])
95
- s.add_dependency(%q<shoulda>, [">= 0"])
91
+ s.add_dependency(%q<bundler>, [">= 1.6.2", "~> 1.6"])
92
+ s.add_dependency(%q<jeweler>, [">= 2.0.1", "~> 2.0"])
93
+ s.add_dependency(%q<rdoc>, [">= 4.1.1", "~> 4.1.1"])
96
94
  end
97
95
  end
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metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: bio-gem
3
3
  version: !ruby/object:Gem::Version
4
- version: 1.3.5
4
+ version: 1.3.6
5
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  platform: ruby
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6
  authors:
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7
  - Raoul J.P. Bonnal
@@ -9,64 +9,68 @@ authors:
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9
  autorequire:
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  bindir: bin
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  cert_chain: []
12
- date: 2013-07-24 00:00:00.000000000 Z
12
+ date: 2014-05-20 00:00:00.000000000 Z
13
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  dependencies:
14
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  - !ruby/object:Gem::Dependency
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  name: bundler
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
18
- - - '>='
18
+ - - ">="
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  - !ruby/object:Gem::Version
20
- version: 1.0.21
20
+ version: 1.6.2
21
+ - - "~>"
22
+ - !ruby/object:Gem::Version
23
+ version: '1.6'
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
25
- - - '>='
28
+ - - ">="
29
+ - !ruby/object:Gem::Version
30
+ version: 1.6.2
31
+ - - "~>"
26
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  - !ruby/object:Gem::Version
27
- version: 1.0.21
33
+ version: '1.6'
28
34
  - !ruby/object:Gem::Dependency
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  name: jeweler
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36
  requirement: !ruby/object:Gem::Requirement
31
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  requirements:
32
- - - '>='
38
+ - - ">="
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+ - !ruby/object:Gem::Version
40
+ version: 2.0.1
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+ - - "~>"
33
42
  - !ruby/object:Gem::Version
34
- version: '0'
43
+ version: '2.0'
35
44
  type: :runtime
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45
  prerelease: false
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46
  version_requirements: !ruby/object:Gem::Requirement
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47
  requirements:
39
- - - '>='
48
+ - - ">="
40
49
  - !ruby/object:Gem::Version
41
- version: '0'
50
+ version: 2.0.1
51
+ - - "~>"
52
+ - !ruby/object:Gem::Version
53
+ version: '2.0'
42
54
  - !ruby/object:Gem::Dependency
43
55
  name: rdoc
44
56
  requirement: !ruby/object:Gem::Requirement
45
57
  requirements:
46
- - - '>='
58
+ - - ">="
59
+ - !ruby/object:Gem::Version
60
+ version: 4.1.1
61
+ - - "~>"
47
62
  - !ruby/object:Gem::Version
48
- version: '0'
63
+ version: 4.1.1
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64
  type: :runtime
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65
  prerelease: false
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66
  version_requirements: !ruby/object:Gem::Requirement
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67
  requirements:
53
- - - '>='
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- - !ruby/object:Gem::Version
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- version: '0'
56
- - !ruby/object:Gem::Dependency
57
- name: shoulda
58
- requirement: !ruby/object:Gem::Requirement
59
- requirements:
60
- - - '>='
68
+ - - ">="
61
69
  - !ruby/object:Gem::Version
62
- version: '0'
63
- type: :development
64
- prerelease: false
65
- version_requirements: !ruby/object:Gem::Requirement
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- requirements:
67
- - - '>='
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+ version: 4.1.1
71
+ - - "~>"
68
72
  - !ruby/object:Gem::Version
69
- version: '0'
73
+ version: 4.1.1
70
74
  description: |-
71
75
  Biogem is a software generator for those bioinformaticans who want to start coding an application or a library for using/extending BioRuby core library and sharing it through rubygems.org .
72
76
  The basic idea is to simplify and promote a modular approach to bioinformatics software development
@@ -79,9 +83,9 @@ extra_rdoc_files:
79
83
  - README.rdoc
80
84
  - Tutorial.rdoc
81
85
  files:
82
- - .document
83
- - .travis.yml
84
- - .yardopts
86
+ - ".document"
87
+ - ".travis.yml"
88
+ - ".yardopts"
85
89
  - Gemfile
86
90
  - LICENSE.txt
87
91
  - README.rdoc
@@ -131,24 +135,24 @@ licenses:
131
135
  metadata: {}
132
136
  post_install_message:
133
137
  rdoc_options:
134
- - --main
138
+ - "--main"
135
139
  - README
136
- - --line-numbers
140
+ - "--line-numbers"
137
141
  require_paths:
138
142
  - lib
139
143
  required_ruby_version: !ruby/object:Gem::Requirement
140
144
  requirements:
141
- - - '>='
145
+ - - ">="
142
146
  - !ruby/object:Gem::Version
143
- version: '1.9'
147
+ version: 1.9.3
144
148
  required_rubygems_version: !ruby/object:Gem::Requirement
145
149
  requirements:
146
- - - '>='
150
+ - - ">="
147
151
  - !ruby/object:Gem::Version
148
152
  version: '0'
149
153
  requirements: []
150
154
  rubyforge_project:
151
- rubygems_version: 2.0.0
155
+ rubygems_version: 2.2.1
152
156
  signing_key:
153
157
  specification_version: 4
154
158
  summary: Biogem is a software generator for Ruby in bioinformatics