bio-gem 0.3.2 → 1.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/README.rdoc +35 -35
- data/VERSION +1 -1
- data/bio-gem.gemspec +2 -2
- data/lib/bio-gem/mod/jeweler.rb +1 -1
- data/test/helper.rb +7 -2
- data/test/test_bio-gem.rb +27 -2
- metadata +15 -15
data/README.rdoc
CHANGED
@@ -44,7 +44,7 @@ Some of these steps have been condensed:
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* $ biogem mystuff
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* pass just the simple name, it will add bioruby- for the first level directory and for the github repository
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BUT you'll require the library with bio-mystuff (and this will be the name used on rubygems)
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-
* creates a basic gem structure with a default dependencies for bioruby (bio) version 1.4.
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* creates a basic gem structure with a default dependencies for bioruby (bio) version 1.4.2
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|-- bin [optional = --with-bin]
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| `-- biomystuff (executable)
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|-- Gemfile
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@@ -126,40 +126,40 @@ These options are for Jeweler
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== Tasks
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-
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rake build # Build gem into pkg/
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rake clobber_rcov # Remove rcov products for rcov
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rake clobber_rdoc # Remove rdoc products
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rake console[script] # Start IRB with all runtime dependencies loaded
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rake db:create # Create the database from config/database.yml for the current default (use db:create:all to create all dbs in the config)
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rake db:drop # Drops the database for the current default (use db:drop:all to drop all databases)
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rake db:fixtures:load # Load fixtures into the current environment's database.
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rake db:migrate # Migrate the database (options: VERSION=x, VERBOSE=false).
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rake db:migrate:status # Display status of migrations
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rake db:rollback # Rolls the schema back to the previous version (specify steps w/ STEP=n).
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rake db:schema:dump # Create a db/schema.rb file that can be portably used against any DB supported by AR
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rake db:schema:load # Load a schema.rb file into the database
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rake db:seed # Load the seed data from db/seeds.rb
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rake db:setup # Create the database, load the schema, and initialize with the seed data (use db:reset to also drop the db first)
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rake db:structure:dump # Dump the database structure to an SQL file
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rake db:version # Retrieves the current schema version number
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rake gemcutter:release # Release gem to Gemcutter
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rake gemspec # Generate and validate gemspec
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rake gemspec:debug # Display the gemspec for debugging purposes, as jeweler knows it (not from the filesystem)
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rake gemspec:generate # Regenreate the gemspec on the filesystem
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rake gemspec:release # Regenerate and validate gemspec, and then commits and pushes to git
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rake gemspec:validate # Validates the gemspec on the filesystem
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rake git:release # Tag and push release to git.
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rake install # Build and install gem using `gem install`
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rake rcov # Analyze code coverage with tests
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rake rdoc # Build the rdoc HTML Files
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rake release # Release gem
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rake rerdoc # Force a rebuild of the RDOC files
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rake test # Run tests
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rake version # Displays the current version
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rake version:bump:major # Bump the major version by 1
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rake version:bump:minor # Bump the a minor version by 1
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rake version:bump:patch # Bump the patch version by 1
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rake version:write # Writes out an explicit version.
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== NoTes For Developers
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data/VERSION
CHANGED
@@ -1 +1 @@
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1
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0.
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1.0.0
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data/bio-gem.gemspec
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Gem::Specification.new do |s|
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s.name = %q{bio-gem}
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s.version = "0.
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s.version = "1.0.0"
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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s.authors = [%q{Raoul J.P. Bonnal}]
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s.date = %q{2011-09-
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s.date = %q{2011-09-26}
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s.description = %q{BioGem is a scaffold generator for those Bioinformaticans who want to start coding an application or a library for using/extending BioRuby core library and sharing it through rubygems.org .
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The basic idea is to simplify and promote a modular approach to the BioRuby package.}
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s.email = %q{ilpuccio.febo@gmail.com}
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data/lib/bio-gem/mod/jeweler.rb
CHANGED
@@ -9,7 +9,7 @@ class Jeweler
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alias original_initialize initialize
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def initialize(options = {})
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original_initialize(options)
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development_dependencies << ["bio", ">= 1.4.
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development_dependencies << ["bio", ">= 1.4.2"]
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if options[:biogem_db]
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development_dependencies << ["activerecord", ">= 3.0.7"]
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development_dependencies << ["activesupport", ">= 3.0.7"]
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data/test/helper.rb
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require '
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require 'jeweler/generator'
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require 'bundler'
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require 'bundler/cli'
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require 'fileutils'
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require 'rake'
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begin
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Bundler.setup(:default, :development)
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rescue Bundler::BundlerError => e
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$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
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$LOAD_PATH.unshift(File.dirname(__FILE__))
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require 'bio-gem'
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class Test::Unit::TestCase
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end
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data/test/test_bio-gem.rb
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require 'helper'
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require 'fileutils'
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class TestBiorubyGem < Test::Unit::TestCase
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TEST_DIR = 'test/int_test'
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def setup
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#check and create test directory
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FileUtils.rm_rf(TEST_DIR) if Dir.exist?(TEST_DIR)
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Dir.mkdir TEST_DIR
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end
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def teardown
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#check and remove tested directory
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FileUtils.rm_rf TEST_DIR if Dir.exist?(TEST_DIR)
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end
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def test_create_basic_project
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project_name = "integration"
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Dir.chdir(TEST_DIR) do
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application_exit = Bio::Gem::Generator::Application.run!(project_name)
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files_tested = %W(Gemfile lib lib/bio-#{project_name}.rb LICENSE.txt Rakefile README.rdoc test test/helper.rb test/test_bio-#{project_name}.rb).map do |file_name_to_test|
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File.exist?(File.join("bioruby-#{project_name}",file_name_to_test))
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end
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assert_equal [true, true, true, true, true, true, true, true, true], files_tested
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end
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end
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# should "probably rename this file and start testing for real" do
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# flunk "hey buddy, you should probably rename this file and start testing for real"
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# end
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end
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metadata
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--- !ruby/object:Gem::Specification
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name: bio-gem
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version: !ruby/object:Gem::Version
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version: 0.
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version: 1.0.0
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prerelease:
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platform: ruby
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authors:
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2011-09-
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date: 2011-09-26 00:00:00.000000000Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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requirement: &
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requirement: &2164719420 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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version: 1.0.18
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type: :runtime
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prerelease: false
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version_requirements: *
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version_requirements: *2164719420
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- !ruby/object:Gem::Dependency
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name: jeweler
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requirement: &
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requirement: &2164717980 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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version: 1.6.4
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type: :runtime
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prerelease: false
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version_requirements: *
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version_requirements: *2164717980
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- !ruby/object:Gem::Dependency
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name: shoulda
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requirement: &
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requirement: &2164716880 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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version: '0'
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type: :development
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prerelease: false
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version_requirements: *
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version_requirements: *2164716880
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- !ruby/object:Gem::Dependency
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name: bundler
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requirement: &
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requirement: &2164716080 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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version: 1.0.18
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type: :development
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prerelease: false
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version_requirements: *
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version_requirements: *2164716080
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- !ruby/object:Gem::Dependency
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name: jeweler
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requirement: &
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requirement: &2164714920 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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version: 1.6.4
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type: :development
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prerelease: false
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version_requirements: *
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version_requirements: *2164714920
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- !ruby/object:Gem::Dependency
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name: rcov
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requirement: &
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requirement: &2164713220 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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version: '0'
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type: :development
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prerelease: false
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version_requirements: *
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version_requirements: *2164713220
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description: ! "BioGem is a scaffold generator for those Bioinformaticans who want
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to start coding an application or a library for using/extending BioRuby core library
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and sharing it through rubygems.org .\n The basic idea is to simplify and promote
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version: '0'
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segments:
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- 0
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hash:
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hash: -913022692014142837
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required_rubygems_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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