bio-fastqc 0.5.1 → 0.5.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/lib/bio-fastqc.rb +1 -0
- data/lib/bio/fastqc/io.rb +51 -0
- metadata +2 -1
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 24e302a0001de21bb4e1ad93ef748b397a5758c9
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data.tar.gz: a3fecf79186d42870c47aa5f03595dc62d5c15fc
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 93e3dff6270cd274089ac8cc0598ec66d04e5718ebd26f44ee2cfc01b19b7625f5d1a0bb40b81c18406fa91901f7975c2aab0dbea034782b073eae331cf185ab
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7
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data.tar.gz: 2441701ea9d0761bf2f9aac4ae5b9cdb7ab3d3f55270630d4ba9b1158f1dd26107b8812e8c97282541bf0f904df9e8f460047c97bf5c7a61ffe0b80c0ed40381
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data/VERSION
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@@ -1 +1 @@
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1
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-
0.5.
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1
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0.5.2
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data/lib/bio-fastqc.rb
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@@ -0,0 +1,51 @@
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# -*- coding: utf-8 -*-
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require 'rdf/turtle'
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module Bio
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module FastQC
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class IO
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def initialize(summary_json, id: nil)
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@summary_json = summary_json
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@id = id
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end
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def write(output_file, format)
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case format
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when "json"
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write_json(output_file)
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when "json-ld", "jsonld"
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write_jsonld(output_file)
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when "turtle", "ttl"
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write_ttl(output_file)
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when "tsv"
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write_tsv(output_file)
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end
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end
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def write_json(output_file)
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json = Converter.new(@summary_json, id: @id).to_json
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open(output_file, 'w'){|file| file.puts(json) }
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end
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def write_jsonld(output_file)
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jsonld = Converter.new(@summary_json, id: @id).to_jsonld
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open(output_file, 'w'){|file| file.puts(jsonld) }
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end
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def write_ttl(output_file)
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semantics = Semantics.new(@summary_json, id: @id)
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graph = semantics.turtle_graph
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prefixes = semantics.turtle_prefixes
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RDF::Turtle::Writer.open(output_file, prefixes: prefixes) do |writer|
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writer << graph
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end
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end
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def write_tsv(output_file)
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tsv = Converter.new(@summary_json, id: @id).to_tsv
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open(output_file, 'w'){|file| file.puts(tsv) }
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end
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end
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end
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end
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metadata
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@@ -1,7 +1,7 @@
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--- !ruby/object:Gem::Specification
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name: bio-fastqc
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version: !ruby/object:Gem::Version
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version: 0.5.
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version: 0.5.2
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platform: ruby
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authors:
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- Tazro Inutano Ohta
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@@ -224,6 +224,7 @@ files:
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- lib/bio/fastqc/cli.rb
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- lib/bio/fastqc/converter.rb
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- lib/bio/fastqc/data.rb
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- lib/bio/fastqc/io.rb
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- lib/bio/fastqc/parser.rb
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- lib/bio/fastqc/semantics.rb
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- spec/bio-fastqc_spec.rb
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