bio-fastqc 0.10.4 → 0.10.6
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- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/dockerfile/Dockerfile +2 -0
- data/lib/bio/fastqc/cli.rb +7 -7
- data/lib/bio/fastqc/converter.rb +2 -2
- metadata +3 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: ddd77c8a1af5b9dfc191fa536cfca801ca4103ff63a9e2479a5cbdc1efed9de7
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4
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+
data.tar.gz: 04a615591af4c0c5afe5897bb1cccc67be6eaddb191b05592ed669ee91b89a35
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5
5
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SHA512:
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6
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-
metadata.gz:
|
7
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-
data.tar.gz:
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6
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+
metadata.gz: b81e1fb00428cc991e53271817c49521415352424725e74e465e19d10cd2126f4b7358f5ad6c1e8d5c4ee938b825f18e3201eeb4d93864c0b596b9a94dd3ebe5
|
7
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+
data.tar.gz: ae27039df3c89bbd92c7c894fe7f017b27a1fb2a340e8f8b948c5bc149a4e2a139abaa02bf99c124098875377d870b4d8289b915fd04323cdec74fb0c7d66101
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data/VERSION
CHANGED
@@ -1 +1 @@
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1
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-
0.10.
|
1
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+
0.10.6
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data/lib/bio/fastqc/cli.rb
CHANGED
@@ -6,14 +6,14 @@ require 'json'
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|
6
6
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module Bio
|
7
7
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module FastQC
|
8
8
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class CLI < Thor
|
9
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-
desc "parse [--format format] [filename]", "parse fastqc data in
|
9
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+
desc "parse [--format format] [filename]", "parse fastqc data in directory or zipfile. output format should be json, json-ld, turtle, or tsv"
|
10
10
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option :format, :default => "json"
|
11
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-
def parse(
|
12
|
-
|
13
|
-
|
14
|
-
|
15
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-
|
16
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-
|
11
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+
def parse(*files)
|
12
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+
files.each do |file|
|
13
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+
data = Data.read(file)
|
14
|
+
summary = Parser.new(data).summary
|
15
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+
puts Converter.new(summary).convert_to(options[:format])
|
16
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+
end
|
17
17
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end
|
18
18
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end
|
19
19
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end
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data/lib/bio/fastqc/converter.rb
CHANGED
metadata
CHANGED
@@ -1,14 +1,14 @@
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|
1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: bio-fastqc
|
3
3
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version: !ruby/object:Gem::Version
|
4
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-
version: 0.10.
|
4
|
+
version: 0.10.6
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Tazro Inutano Ohta
|
8
8
|
autorequire:
|
9
9
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bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2018-07-
|
11
|
+
date: 2018-07-26 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: rubyzip
|
@@ -219,6 +219,7 @@ files:
|
|
219
219
|
- Rakefile
|
220
220
|
- VERSION
|
221
221
|
- bin/fastqc-util
|
222
|
+
- dockerfile/Dockerfile
|
222
223
|
- lib/bio-fastqc.rb
|
223
224
|
- lib/bio/fastqc.rb
|
224
225
|
- lib/bio/fastqc/cli.rb
|