bio-exominer 0.0.3
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- data/.document +5 -0
- data/.rspec +1 -0
- data/.travis.yml +14 -0
- data/Gemfile +17 -0
- data/LICENSE.txt +20 -0
- data/README.md +413 -0
- data/Rakefile +58 -0
- data/VERSION +1 -0
- data/bin/exominer +250 -0
- data/bin/hugo_exominer_symbols +74 -0
- data/bin/ncbi_exominer_symbols +79 -0
- data/bin/pack_exominer_symbols +38 -0
- data/features/bio-exominer.feature +9 -0
- data/features/step_definitions/bio-exominer_steps.rb +0 -0
- data/features/support/env.rb +13 -0
- data/lib/bio-exominer.rb +14 -0
- data/lib/bio-exominer/exominer.rb +3 -0
- data/lib/bio-exominer/rdf.rb +38 -0
- data/lib/bio-exominer/symbols.rb +49 -0
- data/lib/bio-exominer/textparser.rb +124 -0
- data/scripts/4store.sh +30 -0
- data/scripts/example.sh +9 -0
- data/scripts/example_rdf.sh +7 -0
- data/scripts/load_rdf.sh +15 -0
- data/spec/bio-exominer_spec.rb +8 -0
- data/spec/rdf_spec.rb +28 -0
- data/spec/spec_helper.rb +19 -0
- data/spec/text_parser_spec.rb +59 -0
- data/test/data/input/hugo_symbols +38106 -0
- metadata +195 -0
metadata
ADDED
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@@ -0,0 +1,195 @@
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--- !ruby/object:Gem::Specification
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name: bio-exominer
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version: !ruby/object:Gem::Version
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4
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version: 0.0.3
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5
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prerelease:
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platform: ruby
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7
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authors:
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8
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- Pjotr Prins
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9
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autorequire:
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10
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bindir: bin
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cert_chain: []
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date: 2014-03-01 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: msgpack
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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name: minitest
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- !ruby/object:Gem::Version
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version: 5.0.7
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- !ruby/object:Gem::Version
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version: 5.0.7
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- !ruby/object:Gem::Dependency
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name: rspec
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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63
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name: cucumber
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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name: bundler
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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- !ruby/object:Gem::Dependency
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name: jeweler
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- !ruby/object:Gem::Version
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version: 2.0.0
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- !ruby/object:Gem::Version
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version: 2.0.0
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- !ruby/object:Gem::Dependency
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name: rdoc
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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124
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- !ruby/object:Gem::Version
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version: '0'
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description: Parse publications for gene names in a fuzzy fashion
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email: pjotr.public01@thebird.nl
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executables:
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- exominer
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- hugo_exominer_symbols
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- ncbi_exominer_symbols
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- pack_exominer_symbols
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extensions: []
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extra_rdoc_files:
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- LICENSE.txt
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- README.md
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files:
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- .document
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139
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- .rspec
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- .travis.yml
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141
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- Gemfile
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142
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- LICENSE.txt
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143
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- README.md
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144
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- Rakefile
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145
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- VERSION
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146
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- bin/exominer
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147
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- bin/hugo_exominer_symbols
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148
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- bin/ncbi_exominer_symbols
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149
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- bin/pack_exominer_symbols
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150
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- features/bio-exominer.feature
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151
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- features/step_definitions/bio-exominer_steps.rb
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152
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- features/support/env.rb
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153
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- lib/bio-exominer.rb
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154
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- lib/bio-exominer/exominer.rb
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155
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- lib/bio-exominer/rdf.rb
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156
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- lib/bio-exominer/symbols.rb
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157
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- lib/bio-exominer/textparser.rb
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158
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- scripts/4store.sh
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159
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- scripts/example.sh
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160
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- scripts/example_rdf.sh
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161
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- scripts/load_rdf.sh
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162
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- spec/bio-exominer_spec.rb
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163
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- spec/rdf_spec.rb
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164
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- spec/spec_helper.rb
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165
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- spec/text_parser_spec.rb
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166
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- test/data/input/hugo_symbols
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167
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homepage: http://github.com/pjotrp/bioruby-exominer
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licenses:
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169
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- MIT
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post_install_message:
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171
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rdoc_options: []
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require_paths:
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173
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- lib
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required_ruby_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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segments:
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- 0
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hash: -629431524748510326
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required_rubygems_version: !ruby/object:Gem::Requirement
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184
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none: false
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requirements:
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186
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 1.8.23
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signing_key:
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specification_version: 3
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summary: Mine publications for gene names
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test_files: []
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