bio-ensembl-rest 0.1.0

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Files changed (30) hide show
  1. checksums.yaml +7 -0
  2. data/.travis.yml +10 -0
  3. data/Gemfile +16 -0
  4. data/LICENSE.txt +20 -0
  5. data/README.md +51 -0
  6. data/Rakefile +45 -0
  7. data/lib/bio-ensembl-rest.rb +19 -0
  8. data/lib/bio-ensembl-rest/comparative-genomics.rb +117 -0
  9. data/lib/bio-ensembl-rest/cross-reference.rb +55 -0
  10. data/lib/bio-ensembl-rest/ensembl-rest-main.rb +108 -0
  11. data/lib/bio-ensembl-rest/features.rb +46 -0
  12. data/lib/bio-ensembl-rest/information.rb +133 -0
  13. data/lib/bio-ensembl-rest/lookup.rb +20 -0
  14. data/lib/bio-ensembl-rest/mapping.rb +55 -0
  15. data/lib/bio-ensembl-rest/ontologies.rb +68 -0
  16. data/lib/bio-ensembl-rest/sequence.rb +37 -0
  17. data/lib/bio-ensembl-rest/taxonomy.rb +30 -0
  18. data/lib/bio-ensembl-rest/variation.rb +37 -0
  19. data/test/helper.rb +20 -0
  20. data/test/test-comparative-genomics.rb +159 -0
  21. data/test/test-cross-reference.rb +81 -0
  22. data/test/test-features.rb +76 -0
  23. data/test/test-information.rb +131 -0
  24. data/test/test-lookup.rb +45 -0
  25. data/test/test-mapping.rb +105 -0
  26. data/test/test-ontologies.rb +116 -0
  27. data/test/test-sequence.rb +110 -0
  28. data/test/test-taxonomy.rb +58 -0
  29. data/test/test-variation.rb +62 -0
  30. metadata +157 -0
metadata ADDED
@@ -0,0 +1,157 @@
1
+ --- !ruby/object:Gem::Specification
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+ name: bio-ensembl-rest
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+ version: !ruby/object:Gem::Version
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+ version: 0.1.0
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+ platform: ruby
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+ authors:
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+ - Alberto Donizetti
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+ autorequire:
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+ bindir: bin
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+ cert_chain: []
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+ date: 2013-08-28 00:00:00.000000000 Z
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+ dependencies:
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+ - !ruby/object:Gem::Dependency
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+ name: bio
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - '>='
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+ - !ruby/object:Gem::Version
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+ version: 1.4.3
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+ type: :runtime
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - '>='
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+ - !ruby/object:Gem::Version
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+ version: 1.4.3
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+ - !ruby/object:Gem::Dependency
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+ name: libxml-ruby
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - '>='
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+ - !ruby/object:Gem::Version
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+ version: '2'
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+ type: :runtime
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - '>='
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+ - !ruby/object:Gem::Version
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+ version: '2'
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+ - !ruby/object:Gem::Dependency
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+ name: shoulda
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ - !ruby/object:Gem::Dependency
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+ name: rdoc
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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+ version: '3.12'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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+ version: '3.12'
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+ - !ruby/object:Gem::Dependency
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+ name: bundler
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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+ version: 1.3.5
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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+ version: 1.3.5
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+ - !ruby/object:Gem::Dependency
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+ name: jeweler
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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+ version: 1.8.4
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ~>
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+ - !ruby/object:Gem::Version
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+ version: 1.8.4
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+ description: A Ruby library for the RESTful Ensembl API.
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+ email: alb.donizetti@gmail.com
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+ executables: []
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+ extensions: []
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+ extra_rdoc_files:
102
+ - LICENSE.txt
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+ - README.md
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+ files:
105
+ - .travis.yml
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+ - Gemfile
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+ - LICENSE.txt
108
+ - README.md
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+ - Rakefile
110
+ - lib/bio-ensembl-rest.rb
111
+ - lib/bio-ensembl-rest/comparative-genomics.rb
112
+ - lib/bio-ensembl-rest/cross-reference.rb
113
+ - lib/bio-ensembl-rest/ensembl-rest-main.rb
114
+ - lib/bio-ensembl-rest/features.rb
115
+ - lib/bio-ensembl-rest/information.rb
116
+ - lib/bio-ensembl-rest/lookup.rb
117
+ - lib/bio-ensembl-rest/mapping.rb
118
+ - lib/bio-ensembl-rest/ontologies.rb
119
+ - lib/bio-ensembl-rest/sequence.rb
120
+ - lib/bio-ensembl-rest/taxonomy.rb
121
+ - lib/bio-ensembl-rest/variation.rb
122
+ - test/helper.rb
123
+ - test/test-comparative-genomics.rb
124
+ - test/test-cross-reference.rb
125
+ - test/test-features.rb
126
+ - test/test-information.rb
127
+ - test/test-lookup.rb
128
+ - test/test-mapping.rb
129
+ - test/test-ontologies.rb
130
+ - test/test-sequence.rb
131
+ - test/test-taxonomy.rb
132
+ - test/test-variation.rb
133
+ homepage: http://github.com/ALTree/bio-ensembl-rest
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+ licenses:
135
+ - MIT
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+ metadata: {}
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+ post_install_message:
138
+ rdoc_options: []
139
+ require_paths:
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+ - lib
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+ required_ruby_version: !ruby/object:Gem::Requirement
142
+ requirements:
143
+ - - '>='
144
+ - !ruby/object:Gem::Version
145
+ version: '0'
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+ required_rubygems_version: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ requirements: []
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+ rubyforge_project:
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+ rubygems_version: 2.0.3
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+ signing_key:
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+ specification_version: 4
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+ summary: Ruby Ensembl REST api
157
+ test_files: []