bio-commandeer 0.2.0 → 0.3.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
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-  data.tar.gz: 56b7ee0ac4061f603d4c41491b5b81d968cd9332
+  metadata.gz: df4baa9e79d6744596ddb0d4f9549b131698cce6
+  data.tar.gz: 28b5b0e5f6813c5d61adba3ad0a4b1cda7dac555
 SHA512:
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+  data.tar.gz: f94154012f7505943ae437283fb79a37c0eb2a8a629ad6b85b1307b2af10e5bbbfa4847d76890d285d04bb2c9eae1731a6842fcac2d1dceadfeec797987ff4a4

data/VERSION

@@ -1 +1 @@
-0.2.0
+0.3.0

data/lib/bio-commandeer/commandeer.rb

@@ -11,10 +11,7 @@ module Bio
     # :log: if true, turn on logging. If given an object use it as the logger
     def self.run(command, options={})
       obj = run_to_finish(command, options)
-
-      if obj.status.exitstatus != 0
-        raise Bio::CommandFailedException, "Command returned non-zero exit status (#{obj.status.exitstatus}), likely indicating failure. Command run was #{command} and the STDERR was:\n#{obj.stderr}\nSTDOUT was: #{obj.stdout}"
-      end
+      obj.raise_if_failed
 
       return obj.stdout
     end
@@ -48,6 +45,12 @@ module Bio
 
   class CommandResult
     attr_accessor :stdout, :stderr, :command, :status
+
+    def raise_if_failed
+      if @status.exitstatus != 0
+        raise Bio::CommandFailedException, "Command returned non-zero exit status (#{@status.exitstatus}), likely indicating failure. Command run was #{@command} and the STDERR was:\n#{@stderr}\nSTDOUT was: #{@stdout}"
+      end
+    end
   end
 
   class CommandFailedException < Exception; end

data/spec/bio-commandeer_spec.rb

@@ -59,4 +59,9 @@ describe "BioCommandeer" do
     expect(obj.stderr).to eq "cat: /definitelyNotAFile: No such file or directory\n"
     expect(obj.command).to eq "cat /definitelyNotAFile"
   end
+
+  it 'should raise if failed' do
+    obj = Bio::Commandeer.run_to_finish("cat /definitelyNotAFile")
+    expect{obj.raise_if_failed}.to raise_error(Bio::CommandFailedException)
+  end
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: bio-commandeer
 version: !ruby/object:Gem::Version
-  version: 0.2.0
+  version: 0.3.0
 platform: ruby
 authors:
 - Ben J. Woodcroft
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2017-08-01 00:00:00.000000000 Z
+date: 2017-08-07 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bio-logger