bio-commandeer 0.1.1 → 0.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile +1 -1
- data/README.md +6 -1
- data/VERSION +1 -1
- metadata +3 -3
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA1:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 5d1436e7c7b10bdcdf1a2924bdf1e2449a6f69da
|
|
4
|
+
data.tar.gz: fefffaf42425620e2eaa40a1a03a1b4d54430a5f
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 476d9922c20d8975144843baa7f8e6ca1cc4bc6fb64ebbaf20a70dcfe7f6f74d3f419e99e16dd9ffecee6a81bbea54ba6533f5ea32fbe2ec796565be4a1f1f95
|
|
7
|
+
data.tar.gz: 286e80621fc7112211486b89301d7c0b3343e05068b453f1e411c6c1b1bfd5144e70ccc919d29742fa41435b7cb89743a8648e5931a084ba5179801cd6d8af2b
|
data/Gemfile
CHANGED
data/README.md
CHANGED
|
@@ -9,6 +9,7 @@ require 'bio-commandeer'
|
|
|
9
9
|
Bio::Commandeer.run 'echo 5' #=> "5\n"
|
|
10
10
|
```
|
|
11
11
|
The real advantage of bio-commandeer is that when something goes wrong, it tells you; you don't have go looking for the error. Take for instance this simple script:
|
|
12
|
+
|
|
12
13
|
```ruby
|
|
13
14
|
#!/usr/bin/env ruby
|
|
14
15
|
require 'bio-commandeer'
|
|
@@ -16,6 +17,7 @@ print Bio::Commandeer.run('echo 5')
|
|
|
16
17
|
print Bio::Commandeer.run('cat /not_a_file')
|
|
17
18
|
```
|
|
18
19
|
The output is:
|
|
20
|
+
|
|
19
21
|
```sh
|
|
20
22
|
5
|
|
21
23
|
<snip>/lib/bio-commandeer/commandeer.rb:32:in `run': Command returned non-zero exit status (1), likely indicating failure. Command run was cat /not_a_file and the STDERR was: (Bio::CommandFailedException)
|
|
@@ -30,17 +32,20 @@ Note: this software is under active development! Currently it is perhaps overly
|
|
|
30
32
|
|
|
31
33
|
## Logging
|
|
32
34
|
Commands run are logged with level info, if requested:
|
|
35
|
+
|
|
33
36
|
```ruby
|
|
34
37
|
require 'bio-commandeer'
|
|
35
38
|
Bio::Log::CLI.logger("stderr"); Bio::Log::CLI.trace("info");
|
|
36
39
|
puts Bio::Commandeer.run 'echo 5', :log=>true
|
|
37
40
|
```
|
|
38
41
|
On stderr this gives
|
|
42
|
+
|
|
39
43
|
```
|
|
40
44
|
INFO bio-commandeer: Running command: echo 5
|
|
41
45
|
INFO bio-commandeer: Command finished with exitstatus 0
|
|
42
46
|
```
|
|
43
47
|
Or a logging can be given directly, so long as it has an `info` method:
|
|
48
|
+
|
|
44
49
|
```ruby
|
|
45
50
|
Bio::Commandeer.run 'echo 5', :log=>my_logger
|
|
46
51
|
```
|
|
@@ -58,5 +63,5 @@ This Biogem is published at (http://biogems.info/index.html#bio-commandeer)
|
|
|
58
63
|
|
|
59
64
|
## Copyright
|
|
60
65
|
|
|
61
|
-
Copyright (c) 2014 Ben J. Woodcroft. See LICENSE.txt for further details.
|
|
66
|
+
Copyright (c) 2014-2015 Ben J. Woodcroft. See LICENSE.txt for further details.
|
|
62
67
|
|
data/VERSION
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
0.1.
|
|
1
|
+
0.1.2
|
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: bio-commandeer
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.1.
|
|
4
|
+
version: 0.1.2
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Ben J. Woodcroft
|
|
@@ -58,14 +58,14 @@ dependencies:
|
|
|
58
58
|
requirements:
|
|
59
59
|
- - "~>"
|
|
60
60
|
- !ruby/object:Gem::Version
|
|
61
|
-
version: '
|
|
61
|
+
version: '4.2'
|
|
62
62
|
type: :development
|
|
63
63
|
prerelease: false
|
|
64
64
|
version_requirements: !ruby/object:Gem::Requirement
|
|
65
65
|
requirements:
|
|
66
66
|
- - "~>"
|
|
67
67
|
- !ruby/object:Gem::Version
|
|
68
|
-
version: '
|
|
68
|
+
version: '4.2'
|
|
69
69
|
- !ruby/object:Gem::Dependency
|
|
70
70
|
name: jeweler
|
|
71
71
|
requirement: !ruby/object:Gem::Requirement
|