bio-cd-hit-report 0.0.1 → 0.0.2

data/VERSION

@@ -1 +1 @@
-0.0.1
+0.0.2

data/lib/bio-cd-hit-report.rb

@@ -1,14 +1 @@
 require_relative "bio-cd-hit-report/cd-hit-report"
-
-#cluster_file = "#{ENV['HOME']}/DBL_tags/cluster/cd-hit/cluster95.clstr"
-
-#report = Bio::CdHitReport.new(cluster_file)
-#puts report.max_members #print the max number of sequences in a cluster for the entire dataset
-#puts report.min_members #print the minimum number of sequences in a cluster for the entire dataset
-#puts report.total_clusters #print total number of clusters in the report
-
-#report.each_cluster do |c|
-  #puts "#{c.name} - #{c.members}" #list cluster name/id with respective number of sequences in the cluster
-#end
-
-

data/lib/bio-cd-hit-report/cd-hit-report.rb

@@ -26,14 +26,17 @@ require_relative 'cluster.rb'
 
     private
     def cluster_objs
-      raw_data.map do |line|
+      d = raw_data.map do |line|
         cluster = line.split("\n").delete_if{|x| x == ">Cluster "}
         id = cluster.first
         cluster.shift
+        #puts id.inspect
         Cluster.new(id,cluster)
       end
+      d.delete_if {|obj| obj.id.nil?}
     end
 
+
     def raw_data
       File.open(@file).readlines
     end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-cd-hit-report
 version: !ruby/object:Gem::Version
-  version: 0.0.1
+  version: 0.0.2
   prerelease: 
 platform: ruby
 authors:
@@ -144,7 +144,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: -2084256407332630455
+      hash: 3043469588935666177
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: