bio-cd-hit-report 0.0.1 → 0.0.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/VERSION +1 -1
- data/lib/bio-cd-hit-report.rb +0 -13
- data/lib/bio-cd-hit-report/cd-hit-report.rb +4 -1
- metadata +2 -2
data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.0.
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1
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+
0.0.2
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data/lib/bio-cd-hit-report.rb
CHANGED
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@@ -1,14 +1 @@
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1
1
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require_relative "bio-cd-hit-report/cd-hit-report"
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2
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-
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3
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-
#cluster_file = "#{ENV['HOME']}/DBL_tags/cluster/cd-hit/cluster95.clstr"
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4
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-
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5
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#report = Bio::CdHitReport.new(cluster_file)
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6
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#puts report.max_members #print the max number of sequences in a cluster for the entire dataset
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7
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#puts report.min_members #print the minimum number of sequences in a cluster for the entire dataset
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8
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#puts report.total_clusters #print total number of clusters in the report
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9
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-
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10
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#report.each_cluster do |c|
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11
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#puts "#{c.name} - #{c.members}" #list cluster name/id with respective number of sequences in the cluster
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#end
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13
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-
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14
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-
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@@ -26,14 +26,17 @@ require_relative 'cluster.rb'
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private
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def cluster_objs
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29
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raw_data.map do |line|
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29
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+
d = raw_data.map do |line|
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cluster = line.split("\n").delete_if{|x| x == ">Cluster "}
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id = cluster.first
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cluster.shift
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#puts id.inspect
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Cluster.new(id,cluster)
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end
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36
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+
d.delete_if {|obj| obj.id.nil?}
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end
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39
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+
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def raw_data
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File.open(@file).readlines
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end
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
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--- !ruby/object:Gem::Specification
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name: bio-cd-hit-report
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version: !ruby/object:Gem::Version
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4
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-
version: 0.0.
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4
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+
version: 0.0.2
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prerelease:
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platform: ruby
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authors:
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@@ -144,7 +144,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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version: '0'
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segments:
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- 0
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147
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-
hash:
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147
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+
hash: 3043469588935666177
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required_rubygems_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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