bio-bigbio 0.1.1

data/test/data/EMBOSS/EGC.1

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+# Genetic Code Table
+#
+# Obtained from: http://www3.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi
+#
+#  Version 3.4
+#     Added CTG,TTG as allowed alternate start codons in Standard code.
+#        Prats et al. 1989, Hann et al. 1992
+#
+# Initiation Codon:
+#
+# AUG 
+# 
+# Alternative Initiation Codons
+#
+# In rare cases, translation in eukaryotes can be initiated from codons
+# other than AUG.  A well documented case (including direct protein
+# sequencing) is the GUG start of a ribosomal P protein of the fungus
+# Candida albicans (Abramczyk et al.).  Other examples can be found in the
+# following references: Peabody 1989; Prats et al.  1989; Hann et al. 
+# 1992; Sugihara et al.  1990. 
+#
+# GUG, CUG, UUG 
+
+Genetic Code [1]
+
+Standard
+ 
+AAs  =   FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG
+Starts = ---M---------------M---------------M----------------------------
+Base1  = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
+Base2  = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
+Base3  = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG