bio-bgzf 0.2.0 → 0.2.1

data/VERSION

@@ -1 +1 @@
-0.2.0
+0.2.1

data/lib/bio-bgzf/writer.rb

@@ -1,13 +1,21 @@
+require 'zlib'
+
 module Bio::BGZF
   
   class Writer
     include Bio::BGZF
 
-    attr_reader :f, :buf
+    attr_reader :f, :buf, :level
+
+    # Return the virtual offset of the last {#write} call. This is a
+    # hook for e.g. building an index on the fly.
+    attr_reader :last_write_pos
 
-    def initialize(f)
+    def initialize(f, level=2)
       @f = f
+      @level = level
       @buf = ''
+      @buf_write_pos = 0
       if block_given?
         begin
           yield self
@@ -24,15 +32,22 @@ module Bio::BGZF
     def write_buf
       if buf.size > 0
         raise "Buffer too large: #{buf.bytesize}" if buf.bytesize > MAX_BYTES
-        block = pack(buf)
+        block = pack(buf, level)
         f.write(block)
         @buf = ''
+        @buf_write_pos = tell
       end
     end
 
+    # @api private
+    def _cur_write_pos
+      @buf_write_pos + buf.bytesize
+    end
+
     def write(s)
       if s.bytesize > MAX_BYTES
         write_buf
+        @last_write_pos = _cur_write_pos
         _each_slice(s) do |slice|
           write(slice)
         end
@@ -40,6 +55,7 @@ module Bio::BGZF
         if (s.bytesize + buf.bytesize) > MAX_BYTES
           write_buf
         end
+        @last_write_pos = _cur_write_pos
         buf << s
       end
     end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-bgzf
 version: !ruby/object:Gem::Version
-  version: 0.2.0
+  version: 0.2.1
   prerelease: 
 platform: ruby
 authors:
@@ -10,7 +10,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-08-02 00:00:00.000000000 Z
+date: 2012-08-06 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
@@ -104,7 +104,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: 4066832272659457160
+      hash: -2944900178146430147
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: