bio-basespace-sdk 0.1.5 → 0.1.6

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data/README.md

@@ -45,15 +45,15 @@ To test that everything is working as expected, launch a Interactive Ruby and tr
     >> require 'bio-basespace-sdk'
     >> include Bio::BaseSpace
 
-### Pre-Release Version [![Build Status](https://travis-ci.org/joejimbo/basespace-ruby-sdk.png?branch=master)](https://travis-ci.org/joejimbo/basespace-ruby-sdk)
+### Pre-Release Version [![Build Status](https://travis-ci.org/basespace/basespace-ruby-sdk.png?branch=master)](https://travis-ci.org/basespace/basespace-ruby-sdk)
 
 The pre-release version of BaseSpace Ruby SDK can be checked out here:
 
-    git clone https://github.com/joejimbo/basespace-ruby-sdk.git
+    git clone https://github.com/basespace/basespace-ruby-sdk.git
 
 or by,
 
-    git clone git@github.com:joejimbo/basespace-ruby-sdk.git
+    git clone git@github.com:basespace/basespace-ruby-sdk.git
 
 For a description on how to build the pre-release version see "[SDK Development Manual](#sdk-development-manual)".
 
@@ -104,7 +104,7 @@ The file `credentials.json` contains the authentication/connection details in [J
 
 ## Application Triggering
 
-**Example Source Code:** [examples/0\_app\_triggering.rb](https://github.com/joejimbo/basespace-ruby-sdk/blob/master/examples/0_app_triggering.rb)
+**Example Source Code:** [examples/0\_app\_triggering.rb](https://github.com/basespace/basespace-ruby-sdk/blob/master/examples/0_app_triggering.rb)
 
 This section demonstrates how to retrieve the `AppSession` object produced when a user triggers a BaseSpace App. 
 Further, we cover how to automatically generate the scope strings to request access to the data object (be it a project or a sample) that the App was triggered to analyze.
@@ -231,7 +231,7 @@ For more details on access-requests and authentication and an example of the web
 
 ## BaseSpace Authentication
 
-**Example Source Code:** [examples/1\_authentication.rb](https://github.com/joejimbo/basespace-ruby-sdk/blob/master/examples/1_authentication.rb) and [examples/2\_browsing.rb](https://github.com/joejimbo/basespace-ruby-sdk/blob/master/examples/2_browsing.rb)
+**Example Source Code:** [examples/1\_authentication.rb](https://github.com/basespace/basespace-ruby-sdk/blob/master/examples/1_authentication.rb) and [examples/2\_browsing.rb](https://github.com/basespace/basespace-ruby-sdk/blob/master/examples/2_browsing.rb)
 
 Here we demonstrate the basic BaseSpace authentication process. The workflow outlined here is
 
@@ -348,7 +348,7 @@ The output will be similar to:
     
 ## Accessing and Querying Files
 
-**Example Source Code:** [examples/3\_accessing\_files.rb](https://github.com/joejimbo/basespace-ruby-sdk/blob/master/examples/3_accessing_files.rb)
+**Example Source Code:** [examples/3\_accessing\_files.rb](https://github.com/basespace/basespace-ruby-sdk/blob/master/examples/3_accessing_files.rb)
 
 In this section we demonstrate how to access samples and analysis from a projects and how to work with the available file data for such instances. In addition, we take a look at some of the special queuring methods associated with BAM- and VCF-files. 
 
@@ -459,7 +459,7 @@ The output will be:
 
 ## Creating an AppResult and Uploading Files
 
-**Example Source Code:** [4\_app\_result\_upload.rb](https://github.com/joejimbo/basespace-ruby-sdk/blob/master/examples/4_app_result_upload.rb)
+**Example Source Code:** [4\_app\_result\_upload.rb](https://github.com/basespace/basespace-ruby-sdk/blob/master/examples/4_app_result_upload.rb)
 
 In this section we will see how to create a new `AppResult` object, change the state of the related AppSession,
 and upload result files to it as well as retrieve files from it. 
@@ -617,7 +617,7 @@ You can supply a dictionary of query parameters when retrieving App results, in
 
 ## Feature Requests and Bug Reporting
 
-Please report any feedback regarding the BaseSpace Ruby SDK directly to the [GitHub repository](https://github.com/joejimbo/basespace-ruby-sdk). We appreciate any and all feedback about the SDKs and we will do anything we can to improve the functionality and quality of the SDK to make it the best SDK for developers to use. 
+Please report any feedback regarding the BaseSpace Ruby SDK directly to the [GitHub repository](https://github.com/basespace/basespace-ruby-sdk). We appreciate any and all feedback about the SDKs and we will do anything we can to improve the functionality and quality of the SDK to make it the best SDK for developers to use. 
 
 # SDK Development Manual
 
@@ -675,6 +675,6 @@ In alphabetical order (last name):
 
 # Copying and License
 
-See [License.txt](https://raw.github.com/joejimbo/basespace-ruby-sdk/master/License.txt) for details on licensing and distribution.
+See [License.txt](https://raw.github.com/basespace/basespace-ruby-sdk/master/License.txt) for details on licensing and distribution.
 
 

data/Rakefile

@@ -15,7 +15,7 @@ require 'jeweler'
 Jeweler::Tasks.new do |gem|
   # gem is a Gem::Specification... see http://docs.rubygems.org/read/chapter/20 for more options
   gem.name = "bio-basespace-sdk"
-  gem.homepage = "https://github.com/joejimbo/basespace-ruby-sdk"
+  gem.homepage = "https://github.com/basespace/basespace-ruby-sdk"
   gem.license = "Apache, Version 2.0"
   gem.summary = %Q{BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the development of Apps and scripts for working with Illumina's BaseSpace cloud-computing solution for next-gen sequencing data analysis.}
   gem.description = %Q{BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the development of Apps and scripts for working with Illumina's BaseSpace cloud-computing solution for next-gen sequencing data analysis.

data/VERSION

@@ -1 +1 @@
-0.1.5
+0.1.6

data/examples/0_app_triggering.rb

@@ -14,7 +14,7 @@
 # limitations under the License.
 
 # Application triggering
-# https://github.com/joejimbo/basespace-ruby-sdk#application-triggering
+# https://github.com/basespace/basespace-ruby-sdk#application-triggering
 
 require 'bio-basespace-sdk'
 

data/examples/1_authentication.rb

@@ -14,7 +14,7 @@
 # limitations under the License.
 
 # BaseSpace Authentication
-# https://github.com/joejimbo/basespace-ruby-sdk#basespace-authentication
+# https://github.com/basespace/basespace-ruby-sdk#basespace-authentication
 
 require 'bio-basespace-sdk'
 

data/examples/2_browsing.rb

@@ -14,7 +14,7 @@
 # limitations under the License.
 
 # Browsing Data
-# https://github.com/joejimbo/basespace-ruby-sdk#browsing-data
+# https://github.com/basespace/basespace-ruby-sdk#browsing-data
 
 require 'bio-basespace-sdk'
 

data/examples/3_accessing_files.rb

@@ -14,7 +14,7 @@
 # limitations under the License.
 
 # Accessing and Querying Files
-# https://github.com/joejimbo/basespace-ruby-sdk#accessing-and-querying-files
+# https://github.com/basespace/basespace-ruby-sdk#accessing-and-querying-files
 
 require 'bio-basespace-sdk'
 

data/examples/4_app_result_upload.rb

@@ -14,7 +14,7 @@
 # limitations under the License.
 
 # Creating an AppResult and Uploading Files
-# https://github.com/joejimbo/basespace-ruby-sdk#creating-an-appresult-and-uploading-files
+# https://github.com/basespace/basespace-ruby-sdk#creating-an-appresult-and-uploading-files
 
 require 'bio-basespace-sdk'
 

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-basespace-sdk
 version: !ruby/object:Gem::Version
-  version: 0.1.5
+  version: 0.1.6
 platform: ruby
 authors:
 - Joachim Baran
@@ -12,7 +12,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2013-07-29 00:00:00.000000000 Z
+date: 2013-08-05 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: getopt
@@ -186,7 +186,7 @@ files:
 - spec/basespaceapi_spec.rb
 - spec/basespaceerror_spec.rb
 - spec/basespacemodel_spec.rb
-homepage: https://github.com/joejimbo/basespace-ruby-sdk
+homepage: https://github.com/basespace/basespace-ruby-sdk
 licenses:
 - Apache, Version 2.0
 metadata: {}