bio-band 0.1.5 → 0.1.6

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Files changed (7) hide show
  1. data/Gemfile +11 -4
  2. data/Gemfile.lock +2 -0
  3. data/README.rdoc +1 -1
  4. data/VERSION +1 -1
  5. data/band_server/simple_server.rb +0 -5
  6. data/bio-band.gemspec +17 -14
  7. metadata +67 -49
data/Gemfile CHANGED
@@ -3,6 +3,14 @@ source "http://rubygems.org"
3
3
  # Example:
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  # gem "activesupport", ">= 2.3.5"
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5
 
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+ platforms :jruby do
7
+ gem "rake"
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+ gem "bio", ">= 1.4.2"
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+ gem "jbundler"
10
+ gem "ruport"
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+ gem "json"
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+ end
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+
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14
  # Add dependencies to develop your gem here.
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15
  # Include everything needed to run rake, tests, features, etc.
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  group :development do
@@ -12,10 +20,9 @@ group :development do
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  gem "bundler", "~> 1.3.5"
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  gem "jeweler", "~> 1.8.4"
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  gem "simplecov", ">= 0"
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- gem "jbundler"
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- gem "ruport"
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+ # gem "jbundler"
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+ # gem "ruport"
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  gem "cucumber"
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  gem "rspec"
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- gem "json"
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- gem "bio", ">= 1.4.2"
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+ # gem "json"
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  end
data/Gemfile.lock CHANGED
@@ -68,6 +68,7 @@ GEM
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68
 
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  PLATFORMS
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  java
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+ ruby
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  DEPENDENCIES
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  bio (>= 1.4.2)
@@ -76,6 +77,7 @@ DEPENDENCIES
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  jbundler
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  jeweler (~> 1.8.4)
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  json
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+ rake
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  rdoc (~> 3.12)
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  rspec
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  ruport
data/README.rdoc CHANGED
@@ -4,7 +4,7 @@ Data mining and machine learning algorithms for Ruby
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4
 
5
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  == Installation
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- Install 'bundle' for JRuby before trying to install the 'bio-band' gem.
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+ Install the 'jbundle' gem and 'bundle' for JRuby before trying to install the 'bio-band' gem.
8
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  Maven is also required for .jars automatic download and installation. On
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  Ubuntu/Debian Maven should already be installed and on OSX system you can get
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  it from Brew
data/VERSION CHANGED
@@ -1 +1 @@
1
- 0.1.5
1
+ 0.1.6
data/band_server/simple_server.rb CHANGED
@@ -9,11 +9,6 @@ require 'JSON'
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  class Trial < Sinatra::Base
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  use Rack::Session::Pool
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11
 
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- # list created datasets or classifiers
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- # get '/list/:data_class' do
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- # session[params[:data_class]].keys.join(",\t")
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- # end
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-
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  get '/datasets' do
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  session[:datasets].keys.join(",\t")
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  end
data/bio-band.gemspec CHANGED
@@ -5,11 +5,11 @@
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5
 
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  Gem::Specification.new do |s|
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  s.name = "bio-band"
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- s.version = "0.1.5"
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+ s.version = "0.1.6"
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  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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11
  s.authors = ["arrigonialberto86"]
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- s.date = "2013-09-11"
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+ s.date = "2013-09-13"
13
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  s.description = "Data mining and machine learning algorithms for JRuby "
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  s.email = "arrigonialberto86@gmail.com"
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  s.executables = ["bio-band"]
@@ -113,45 +113,48 @@ Gem::Specification.new do |s|
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  s.specification_version = 3
114
114
 
115
115
  if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
116
+ s.add_runtime_dependency(%q<rake>, [">= 0"])
117
+ s.add_runtime_dependency(%q<bio>, [">= 1.4.2"])
118
+ s.add_runtime_dependency(%q<jbundler>, [">= 0"])
119
+ s.add_runtime_dependency(%q<ruport>, [">= 0"])
120
+ s.add_runtime_dependency(%q<json>, [">= 0"])
116
121
  s.add_development_dependency(%q<shoulda>, [">= 0"])
117
122
  s.add_development_dependency(%q<test-unit>, [">= 0"])
118
123
  s.add_development_dependency(%q<rdoc>, ["~> 3.12"])
119
124
  s.add_development_dependency(%q<bundler>, ["~> 1.3.5"])
120
125
  s.add_development_dependency(%q<jeweler>, ["~> 1.8.4"])
121
126
  s.add_development_dependency(%q<simplecov>, [">= 0"])
122
- s.add_development_dependency(%q<jbundler>, [">= 0"])
123
- s.add_development_dependency(%q<ruport>, [">= 0"])
124
127
  s.add_development_dependency(%q<cucumber>, [">= 0"])
125
128
  s.add_development_dependency(%q<rspec>, [">= 0"])
126
- s.add_development_dependency(%q<json>, [">= 0"])
127
- s.add_development_dependency(%q<bio>, [">= 1.4.2"])
128
129
  else
130
+ s.add_dependency(%q<rake>, [">= 0"])
131
+ s.add_dependency(%q<bio>, [">= 1.4.2"])
132
+ s.add_dependency(%q<jbundler>, [">= 0"])
133
+ s.add_dependency(%q<ruport>, [">= 0"])
134
+ s.add_dependency(%q<json>, [">= 0"])
129
135
  s.add_dependency(%q<shoulda>, [">= 0"])
130
136
  s.add_dependency(%q<test-unit>, [">= 0"])
131
137
  s.add_dependency(%q<rdoc>, ["~> 3.12"])
132
138
  s.add_dependency(%q<bundler>, ["~> 1.3.5"])
133
139
  s.add_dependency(%q<jeweler>, ["~> 1.8.4"])
134
140
  s.add_dependency(%q<simplecov>, [">= 0"])
135
- s.add_dependency(%q<jbundler>, [">= 0"])
136
- s.add_dependency(%q<ruport>, [">= 0"])
137
141
  s.add_dependency(%q<cucumber>, [">= 0"])
138
142
  s.add_dependency(%q<rspec>, [">= 0"])
139
- s.add_dependency(%q<json>, [">= 0"])
140
- s.add_dependency(%q<bio>, [">= 1.4.2"])
141
143
  end
142
144
  else
145
+ s.add_dependency(%q<rake>, [">= 0"])
146
+ s.add_dependency(%q<bio>, [">= 1.4.2"])
147
+ s.add_dependency(%q<jbundler>, [">= 0"])
148
+ s.add_dependency(%q<ruport>, [">= 0"])
149
+ s.add_dependency(%q<json>, [">= 0"])
143
150
  s.add_dependency(%q<shoulda>, [">= 0"])
144
151
  s.add_dependency(%q<test-unit>, [">= 0"])
145
152
  s.add_dependency(%q<rdoc>, ["~> 3.12"])
146
153
  s.add_dependency(%q<bundler>, ["~> 1.3.5"])
147
154
  s.add_dependency(%q<jeweler>, ["~> 1.8.4"])
148
155
  s.add_dependency(%q<simplecov>, [">= 0"])
149
- s.add_dependency(%q<jbundler>, [">= 0"])
150
- s.add_dependency(%q<ruport>, [">= 0"])
151
156
  s.add_dependency(%q<cucumber>, [">= 0"])
152
157
  s.add_dependency(%q<rspec>, [">= 0"])
153
- s.add_dependency(%q<json>, [">= 0"])
154
- s.add_dependency(%q<bio>, [">= 1.4.2"])
155
158
  end
156
159
  end
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160
 
metadata CHANGED
@@ -2,17 +2,17 @@
2
2
  name: bio-band
3
3
  version: !ruby/object:Gem::Version
4
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  prerelease:
5
- version: 0.1.5
5
+ version: 0.1.6
6
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  platform: ruby
7
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  authors:
8
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  - arrigonialberto86
9
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  autorequire:
10
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  bindir: bin
11
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  cert_chain: []
12
- date: 2013-09-11 00:00:00.000000000 Z
12
+ date: 2013-09-13 00:00:00.000000000 Z
13
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  dependencies:
14
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  - !ruby/object:Gem::Dependency
15
- name: shoulda
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+ name: rake
16
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  version_requirements: !ruby/object:Gem::Requirement
17
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  requirements:
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  - - ">="
@@ -28,75 +28,79 @@ dependencies:
28
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  MA==
29
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  none: false
30
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  prerelease: false
31
- type: :development
31
+ type: :runtime
32
32
  - !ruby/object:Gem::Dependency
33
- name: test-unit
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+ name: bio
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  version_requirements: !ruby/object:Gem::Requirement
35
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  requirements:
36
36
  - - ">="
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  - !ruby/object:Gem::Version
38
- version: !binary |-
39
- MA==
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+ version: 1.4.2
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  none: false
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40
  requirement: !ruby/object:Gem::Requirement
42
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
45
- version: !binary |-
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- MA==
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+ version: 1.4.2
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45
  none: false
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46
  prerelease: false
49
- type: :development
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+ type: :runtime
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48
  - !ruby/object:Gem::Dependency
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- name: rdoc
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+ name: jbundler
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
54
- - - "~>"
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+ - - ">="
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  - !ruby/object:Gem::Version
56
- version: '3.12'
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+ version: !binary |-
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+ MA==
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56
  none: false
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  requirement: !ruby/object:Gem::Requirement
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58
  requirements:
60
- - - "~>"
59
+ - - ">="
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60
  - !ruby/object:Gem::Version
62
- version: '3.12'
61
+ version: !binary |-
62
+ MA==
63
63
  none: false
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64
  prerelease: false
65
- type: :development
65
+ type: :runtime
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  - !ruby/object:Gem::Dependency
67
- name: bundler
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+ name: ruport
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  version_requirements: !ruby/object:Gem::Requirement
69
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  requirements:
70
- - - "~>"
70
+ - - ">="
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  - !ruby/object:Gem::Version
72
- version: 1.3.5
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+ version: !binary |-
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+ MA==
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  none: false
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  requirement: !ruby/object:Gem::Requirement
75
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  requirements:
76
- - - "~>"
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+ - - ">="
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  - !ruby/object:Gem::Version
78
- version: 1.3.5
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+ version: !binary |-
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+ MA==
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  none: false
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  prerelease: false
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- type: :development
83
+ type: :runtime
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  - !ruby/object:Gem::Dependency
83
- name: jeweler
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+ name: json
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
86
- - - "~>"
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+ - - ">="
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  - !ruby/object:Gem::Version
88
- version: 1.8.4
90
+ version: !binary |-
91
+ MA==
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  none: false
90
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  requirement: !ruby/object:Gem::Requirement
91
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  requirements:
92
- - - "~>"
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+ - - ">="
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  - !ruby/object:Gem::Version
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- version: 1.8.4
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+ version: !binary |-
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+ MA==
95
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  none: false
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  prerelease: false
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- type: :development
101
+ type: :runtime
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  - !ruby/object:Gem::Dependency
99
- name: simplecov
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+ name: shoulda
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
@@ -114,7 +118,7 @@ dependencies:
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  prerelease: false
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  type: :development
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  - !ruby/object:Gem::Dependency
117
- name: jbundler
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+ name: test-unit
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
@@ -132,43 +136,55 @@ dependencies:
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  prerelease: false
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  type: :development
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  - !ruby/object:Gem::Dependency
135
- name: ruport
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+ name: rdoc
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  version_requirements: !ruby/object:Gem::Requirement
137
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  requirements:
138
- - - ">="
142
+ - - "~>"
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  - !ruby/object:Gem::Version
140
- version: !binary |-
141
- MA==
144
+ version: '3.12'
142
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  none: false
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  requirement: !ruby/object:Gem::Requirement
144
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  requirements:
145
- - - ">="
148
+ - - "~>"
146
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  - !ruby/object:Gem::Version
147
- version: !binary |-
148
- MA==
150
+ version: '3.12'
149
151
  none: false
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  prerelease: false
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153
  type: :development
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  - !ruby/object:Gem::Dependency
153
- name: cucumber
155
+ name: bundler
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
156
- - - ">="
158
+ - - "~>"
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  - !ruby/object:Gem::Version
158
- version: !binary |-
159
- MA==
160
+ version: 1.3.5
160
161
  none: false
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162
  requirement: !ruby/object:Gem::Requirement
162
163
  requirements:
163
- - - ">="
164
+ - - "~>"
164
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  - !ruby/object:Gem::Version
165
- version: !binary |-
166
- MA==
166
+ version: 1.3.5
167
167
  none: false
168
168
  prerelease: false
169
169
  type: :development
170
170
  - !ruby/object:Gem::Dependency
171
- name: rspec
171
+ name: jeweler
172
+ version_requirements: !ruby/object:Gem::Requirement
173
+ requirements:
174
+ - - "~>"
175
+ - !ruby/object:Gem::Version
176
+ version: 1.8.4
177
+ none: false
178
+ requirement: !ruby/object:Gem::Requirement
179
+ requirements:
180
+ - - "~>"
181
+ - !ruby/object:Gem::Version
182
+ version: 1.8.4
183
+ none: false
184
+ prerelease: false
185
+ type: :development
186
+ - !ruby/object:Gem::Dependency
187
+ name: simplecov
172
188
  version_requirements: !ruby/object:Gem::Requirement
173
189
  requirements:
174
190
  - - ">="
@@ -186,7 +202,7 @@ dependencies:
186
202
  prerelease: false
187
203
  type: :development
188
204
  - !ruby/object:Gem::Dependency
189
- name: json
205
+ name: cucumber
190
206
  version_requirements: !ruby/object:Gem::Requirement
191
207
  requirements:
192
208
  - - ">="
@@ -204,18 +220,20 @@ dependencies:
204
220
  prerelease: false
205
221
  type: :development
206
222
  - !ruby/object:Gem::Dependency
207
- name: bio
223
+ name: rspec
208
224
  version_requirements: !ruby/object:Gem::Requirement
209
225
  requirements:
210
226
  - - ">="
211
227
  - !ruby/object:Gem::Version
212
- version: 1.4.2
228
+ version: !binary |-
229
+ MA==
213
230
  none: false
214
231
  requirement: !ruby/object:Gem::Requirement
215
232
  requirements:
216
233
  - - ">="
217
234
  - !ruby/object:Gem::Version
218
- version: 1.4.2
235
+ version: !binary |-
236
+ MA==
219
237
  none: false
220
238
  prerelease: false
221
239
  type: :development