bio-band 0.1.5 → 0.1.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (7) hide show
  1. data/Gemfile +11 -4
  2. data/Gemfile.lock +2 -0
  3. data/README.rdoc +1 -1
  4. data/VERSION +1 -1
  5. data/band_server/simple_server.rb +0 -5
  6. data/bio-band.gemspec +17 -14
  7. metadata +67 -49
data/Gemfile CHANGED
@@ -3,6 +3,14 @@ source "http://rubygems.org"
3
3
  # Example:
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  # gem "activesupport", ">= 2.3.5"
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+ platforms :jruby do
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+ gem "rake"
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+ gem "bio", ">= 1.4.2"
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+ gem "jbundler"
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+ gem "ruport"
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+ gem "json"
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+ end
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+
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  # Add dependencies to develop your gem here.
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  # Include everything needed to run rake, tests, features, etc.
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  group :development do
@@ -12,10 +20,9 @@ group :development do
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  gem "bundler", "~> 1.3.5"
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  gem "jeweler", "~> 1.8.4"
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  gem "simplecov", ">= 0"
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- gem "jbundler"
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- gem "ruport"
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+ # gem "jbundler"
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+ # gem "ruport"
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  gem "cucumber"
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  gem "rspec"
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- gem "json"
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- gem "bio", ">= 1.4.2"
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+ # gem "json"
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  end
data/Gemfile.lock CHANGED
@@ -68,6 +68,7 @@ GEM
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  PLATFORMS
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  java
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+ ruby
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  DEPENDENCIES
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  bio (>= 1.4.2)
@@ -76,6 +77,7 @@ DEPENDENCIES
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  jbundler
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  jeweler (~> 1.8.4)
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  json
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+ rake
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  rdoc (~> 3.12)
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  rspec
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  ruport
data/README.rdoc CHANGED
@@ -4,7 +4,7 @@ Data mining and machine learning algorithms for Ruby
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  == Installation
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- Install 'bundle' for JRuby before trying to install the 'bio-band' gem.
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+ Install the 'jbundle' gem and 'bundle' for JRuby before trying to install the 'bio-band' gem.
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  Maven is also required for .jars automatic download and installation. On
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  Ubuntu/Debian Maven should already be installed and on OSX system you can get
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  it from Brew
data/VERSION CHANGED
@@ -1 +1 @@
1
- 0.1.5
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+ 0.1.6
data/band_server/simple_server.rb CHANGED
@@ -9,11 +9,6 @@ require 'JSON'
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  class Trial < Sinatra::Base
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  use Rack::Session::Pool
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- # list created datasets or classifiers
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- # get '/list/:data_class' do
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- # session[params[:data_class]].keys.join(",\t")
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- # end
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-
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  get '/datasets' do
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  session[:datasets].keys.join(",\t")
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  end
data/bio-band.gemspec CHANGED
@@ -5,11 +5,11 @@
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5
 
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  Gem::Specification.new do |s|
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  s.name = "bio-band"
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- s.version = "0.1.5"
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+ s.version = "0.1.6"
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  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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  s.authors = ["arrigonialberto86"]
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- s.date = "2013-09-11"
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+ s.date = "2013-09-13"
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  s.description = "Data mining and machine learning algorithms for JRuby "
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  s.email = "arrigonialberto86@gmail.com"
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  s.executables = ["bio-band"]
@@ -113,45 +113,48 @@ Gem::Specification.new do |s|
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  s.specification_version = 3
114
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115
115
  if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
116
+ s.add_runtime_dependency(%q<rake>, [">= 0"])
117
+ s.add_runtime_dependency(%q<bio>, [">= 1.4.2"])
118
+ s.add_runtime_dependency(%q<jbundler>, [">= 0"])
119
+ s.add_runtime_dependency(%q<ruport>, [">= 0"])
120
+ s.add_runtime_dependency(%q<json>, [">= 0"])
116
121
  s.add_development_dependency(%q<shoulda>, [">= 0"])
117
122
  s.add_development_dependency(%q<test-unit>, [">= 0"])
118
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  s.add_development_dependency(%q<rdoc>, ["~> 3.12"])
119
124
  s.add_development_dependency(%q<bundler>, ["~> 1.3.5"])
120
125
  s.add_development_dependency(%q<jeweler>, ["~> 1.8.4"])
121
126
  s.add_development_dependency(%q<simplecov>, [">= 0"])
122
- s.add_development_dependency(%q<jbundler>, [">= 0"])
123
- s.add_development_dependency(%q<ruport>, [">= 0"])
124
127
  s.add_development_dependency(%q<cucumber>, [">= 0"])
125
128
  s.add_development_dependency(%q<rspec>, [">= 0"])
126
- s.add_development_dependency(%q<json>, [">= 0"])
127
- s.add_development_dependency(%q<bio>, [">= 1.4.2"])
128
129
  else
130
+ s.add_dependency(%q<rake>, [">= 0"])
131
+ s.add_dependency(%q<bio>, [">= 1.4.2"])
132
+ s.add_dependency(%q<jbundler>, [">= 0"])
133
+ s.add_dependency(%q<ruport>, [">= 0"])
134
+ s.add_dependency(%q<json>, [">= 0"])
129
135
  s.add_dependency(%q<shoulda>, [">= 0"])
130
136
  s.add_dependency(%q<test-unit>, [">= 0"])
131
137
  s.add_dependency(%q<rdoc>, ["~> 3.12"])
132
138
  s.add_dependency(%q<bundler>, ["~> 1.3.5"])
133
139
  s.add_dependency(%q<jeweler>, ["~> 1.8.4"])
134
140
  s.add_dependency(%q<simplecov>, [">= 0"])
135
- s.add_dependency(%q<jbundler>, [">= 0"])
136
- s.add_dependency(%q<ruport>, [">= 0"])
137
141
  s.add_dependency(%q<cucumber>, [">= 0"])
138
142
  s.add_dependency(%q<rspec>, [">= 0"])
139
- s.add_dependency(%q<json>, [">= 0"])
140
- s.add_dependency(%q<bio>, [">= 1.4.2"])
141
143
  end
142
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  else
145
+ s.add_dependency(%q<rake>, [">= 0"])
146
+ s.add_dependency(%q<bio>, [">= 1.4.2"])
147
+ s.add_dependency(%q<jbundler>, [">= 0"])
148
+ s.add_dependency(%q<ruport>, [">= 0"])
149
+ s.add_dependency(%q<json>, [">= 0"])
143
150
  s.add_dependency(%q<shoulda>, [">= 0"])
144
151
  s.add_dependency(%q<test-unit>, [">= 0"])
145
152
  s.add_dependency(%q<rdoc>, ["~> 3.12"])
146
153
  s.add_dependency(%q<bundler>, ["~> 1.3.5"])
147
154
  s.add_dependency(%q<jeweler>, ["~> 1.8.4"])
148
155
  s.add_dependency(%q<simplecov>, [">= 0"])
149
- s.add_dependency(%q<jbundler>, [">= 0"])
150
- s.add_dependency(%q<ruport>, [">= 0"])
151
156
  s.add_dependency(%q<cucumber>, [">= 0"])
152
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  s.add_dependency(%q<rspec>, [">= 0"])
153
- s.add_dependency(%q<json>, [">= 0"])
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- s.add_dependency(%q<bio>, [">= 1.4.2"])
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158
  end
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  end
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160
 
metadata CHANGED
@@ -2,17 +2,17 @@
2
2
  name: bio-band
3
3
  version: !ruby/object:Gem::Version
4
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  prerelease:
5
- version: 0.1.5
5
+ version: 0.1.6
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  platform: ruby
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  authors:
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  - arrigonialberto86
9
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  autorequire:
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  bindir: bin
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  cert_chain: []
12
- date: 2013-09-11 00:00:00.000000000 Z
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+ date: 2013-09-13 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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- name: shoulda
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+ name: rake
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
@@ -28,75 +28,79 @@ dependencies:
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  MA==
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  none: false
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  prerelease: false
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- type: :development
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+ type: :runtime
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  - !ruby/object:Gem::Dependency
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- name: test-unit
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+ name: bio
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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- version: !binary |-
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- MA==
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+ version: 1.4.2
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  none: false
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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- version: !binary |-
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- MA==
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+ version: 1.4.2
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45
  none: false
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  prerelease: false
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- type: :development
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+ type: :runtime
50
48
  - !ruby/object:Gem::Dependency
51
- name: rdoc
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+ name: jbundler
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
54
- - - "~>"
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+ - - ">="
55
53
  - !ruby/object:Gem::Version
56
- version: '3.12'
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+ version: !binary |-
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+ MA==
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  none: false
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
60
- - - "~>"
59
+ - - ">="
61
60
  - !ruby/object:Gem::Version
62
- version: '3.12'
61
+ version: !binary |-
62
+ MA==
63
63
  none: false
64
64
  prerelease: false
65
- type: :development
65
+ type: :runtime
66
66
  - !ruby/object:Gem::Dependency
67
- name: bundler
67
+ name: ruport
68
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  version_requirements: !ruby/object:Gem::Requirement
69
69
  requirements:
70
- - - "~>"
70
+ - - ">="
71
71
  - !ruby/object:Gem::Version
72
- version: 1.3.5
72
+ version: !binary |-
73
+ MA==
73
74
  none: false
74
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  requirement: !ruby/object:Gem::Requirement
75
76
  requirements:
76
- - - "~>"
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+ - - ">="
77
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  - !ruby/object:Gem::Version
78
- version: 1.3.5
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+ version: !binary |-
80
+ MA==
79
81
  none: false
80
82
  prerelease: false
81
- type: :development
83
+ type: :runtime
82
84
  - !ruby/object:Gem::Dependency
83
- name: jeweler
85
+ name: json
84
86
  version_requirements: !ruby/object:Gem::Requirement
85
87
  requirements:
86
- - - "~>"
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+ - - ">="
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  - !ruby/object:Gem::Version
88
- version: 1.8.4
90
+ version: !binary |-
91
+ MA==
89
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  none: false
90
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  requirement: !ruby/object:Gem::Requirement
91
94
  requirements:
92
- - - "~>"
95
+ - - ">="
93
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  - !ruby/object:Gem::Version
94
- version: 1.8.4
97
+ version: !binary |-
98
+ MA==
95
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  none: false
96
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  prerelease: false
97
- type: :development
101
+ type: :runtime
98
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  - !ruby/object:Gem::Dependency
99
- name: simplecov
103
+ name: shoulda
100
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  version_requirements: !ruby/object:Gem::Requirement
101
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  requirements:
102
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  - - ">="
@@ -114,7 +118,7 @@ dependencies:
114
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  prerelease: false
115
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  type: :development
116
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  - !ruby/object:Gem::Dependency
117
- name: jbundler
121
+ name: test-unit
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  version_requirements: !ruby/object:Gem::Requirement
119
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  requirements:
120
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  - - ">="
@@ -132,43 +136,55 @@ dependencies:
132
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  prerelease: false
133
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  type: :development
134
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  - !ruby/object:Gem::Dependency
135
- name: ruport
139
+ name: rdoc
136
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  version_requirements: !ruby/object:Gem::Requirement
137
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  requirements:
138
- - - ">="
142
+ - - "~>"
139
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  - !ruby/object:Gem::Version
140
- version: !binary |-
141
- MA==
144
+ version: '3.12'
142
145
  none: false
143
146
  requirement: !ruby/object:Gem::Requirement
144
147
  requirements:
145
- - - ">="
148
+ - - "~>"
146
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  - !ruby/object:Gem::Version
147
- version: !binary |-
148
- MA==
150
+ version: '3.12'
149
151
  none: false
150
152
  prerelease: false
151
153
  type: :development
152
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  - !ruby/object:Gem::Dependency
153
- name: cucumber
155
+ name: bundler
154
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  version_requirements: !ruby/object:Gem::Requirement
155
157
  requirements:
156
- - - ">="
158
+ - - "~>"
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  - !ruby/object:Gem::Version
158
- version: !binary |-
159
- MA==
160
+ version: 1.3.5
160
161
  none: false
161
162
  requirement: !ruby/object:Gem::Requirement
162
163
  requirements:
163
- - - ">="
164
+ - - "~>"
164
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  - !ruby/object:Gem::Version
165
- version: !binary |-
166
- MA==
166
+ version: 1.3.5
167
167
  none: false
168
168
  prerelease: false
169
169
  type: :development
170
170
  - !ruby/object:Gem::Dependency
171
- name: rspec
171
+ name: jeweler
172
+ version_requirements: !ruby/object:Gem::Requirement
173
+ requirements:
174
+ - - "~>"
175
+ - !ruby/object:Gem::Version
176
+ version: 1.8.4
177
+ none: false
178
+ requirement: !ruby/object:Gem::Requirement
179
+ requirements:
180
+ - - "~>"
181
+ - !ruby/object:Gem::Version
182
+ version: 1.8.4
183
+ none: false
184
+ prerelease: false
185
+ type: :development
186
+ - !ruby/object:Gem::Dependency
187
+ name: simplecov
172
188
  version_requirements: !ruby/object:Gem::Requirement
173
189
  requirements:
174
190
  - - ">="
@@ -186,7 +202,7 @@ dependencies:
186
202
  prerelease: false
187
203
  type: :development
188
204
  - !ruby/object:Gem::Dependency
189
- name: json
205
+ name: cucumber
190
206
  version_requirements: !ruby/object:Gem::Requirement
191
207
  requirements:
192
208
  - - ">="
@@ -204,18 +220,20 @@ dependencies:
204
220
  prerelease: false
205
221
  type: :development
206
222
  - !ruby/object:Gem::Dependency
207
- name: bio
223
+ name: rspec
208
224
  version_requirements: !ruby/object:Gem::Requirement
209
225
  requirements:
210
226
  - - ">="
211
227
  - !ruby/object:Gem::Version
212
- version: 1.4.2
228
+ version: !binary |-
229
+ MA==
213
230
  none: false
214
231
  requirement: !ruby/object:Gem::Requirement
215
232
  requirements:
216
233
  - - ">="
217
234
  - !ruby/object:Gem::Version
218
- version: 1.4.2
235
+ version: !binary |-
236
+ MA==
219
237
  none: false
220
238
  prerelease: false
221
239
  type: :development