bio-band 0.1.2 → 0.1.3

data/lib/bio-band/weka/filters/unsupervised/attribute/attribute.rb

@@ -8,7 +8,9 @@ module Weka
   		module Attribute
 
   			java_import "weka.filters.unsupervised.attribute.Add"
+        java_import "weka.filters.unsupervised.attribute.AddCluster"
   			java_import "weka.filters.unsupervised.attribute.Center"
+        java_import "weka.filters.unsupervised.attribute.ClusterMembership"
   			java_import "weka.filters.unsupervised.attribute.Discretize"
   			java_import "weka.filters.unsupervised.attribute.NominalToString"
   			java_import "weka.filters.unsupervised.attribute.Normalize"
@@ -23,10 +25,18 @@ module Weka
           include Unsupervised_Util
   			end
 
+        class AddCluster
+          include Unsupervised_Util
+        end
+
   			class Center
           include Unsupervised_Util
   			end
 
+        class ClusterMembership
+          include Unsupervised_Util
+        end
+
   			class Discretize
           include Unsupervised_Util
   			end
@@ -57,6 +67,8 @@ module Weka
 
         Weka::Filter::Unsupervised::Attribute::PrincipalComponents.__persistent__ = true
         Weka::Filter::Unsupervised::Attribute::Add.__persistent__ = true
+        Weka::Filter::Unsupervised::Attribute::AddCluster.__persistent__ = true
+        Weka::Filter::Unsupervised::Attribute::ClusterMembership.__persistent__ = true
         Weka::Filter::Unsupervised::Attribute::Standardize.__persistent__ = true
         Weka::Filter::Unsupervised::Attribute::Remove.__persistent__ = true
         Weka::Filter::Unsupervised::Attribute::Normalize.__persistent__ = true

data/lib/bio-band/weka/filters/unsupervised/unsupervised_utils.rb

@@ -1,33 +1,33 @@
 module Unsupervised_Util
-	java_import "weka.core.Utils"
-	java_import "weka.filters.Filter"
-
-	#Instance methods list
-	def filter_options
-		begin
-			listOptions.each {|key| puts "#{key.synopsis} #{key.description}"}
-		rescue
-			puts  "Sorry, list option is available for this filter"
-		end
-	end
-
-	def set_filter_options(options_string)
-		options = Utils.splitOptions(options_string)
-		setOptions(options)
-	end
-
-	def set_data(instances)
-		setInputFormat(instances)
-		@input = instances
-	end
-
-	def description
-    begin; puts globalInfo; rescue; NoMethodError; puts "Sorry, no description available for this filter"; end
-	end
-
-	def use
-		Filter.useFilter(@input,self)
-	end
+  java_import "weka.core.Utils"
+  java_import "weka.filters.Filter"
+
+  #Instance methods list
+  def options_list
+    listOptions.map {|key| "#{key.synopsis} #{key.description}"}.join("\n")
+  end 
+
+  def filter_options(options_string)
+    options = Utils.splitOptions(options_string)
+    setOptions(options)
+  end
+
+  def data(instances)
+    setInputFormat(instances)
+    @input = instances
+  end
+
+  def description
+    globalInfo
+  end
+
+  def use
+    Filter.useFilter(@input,self)
+  end
+
+  def set(&block)
+    self.instance_eval(&block)
+  end
 
 end
 

metadata

@@ -2,14 +2,14 @@
 name: bio-band
 version: !ruby/object:Gem::Version
   prerelease:
-  version: 0.1.2
+  version: 0.1.3
 platform: ruby
 authors:
 - arrigonialberto86
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2013-07-30 00:00:00.000000000 Z
+date: 2013-09-02 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: shoulda
@@ -247,6 +247,9 @@ files:
 - lib/bio-band/core/type/instances.rb
 - lib/bio-band/core/type/utils.rb
 - lib/bio-band/weka.rb
+- lib/bio-band/weka/attribute_selection/attribute_selection_utils.rb
+- lib/bio-band/weka/attribute_selection/evaluators.rb
+- lib/bio-band/weka/attribute_selection/search.rb
 - lib/bio-band/weka/classifiers/bayes/bayes.rb
 - lib/bio-band/weka/classifiers/bayes/bayes_utils.rb
 - lib/bio-band/weka/classifiers/evaluation.rb
@@ -254,7 +257,9 @@ files:
 - lib/bio-band/weka/classifiers/functions/functions_utils.rb
 - lib/bio-band/weka/classifiers/lazy/lazy.rb
 - lib/bio-band/weka/classifiers/lazy/lazy_utils.rb
-- ! 'lib/bio-band/weka/classifiers/rules/rules.rb '
+- lib/bio-band/weka/classifiers/mi/mi.rb
+- lib/bio-band/weka/classifiers/mi/mi_utils.rb
+- lib/bio-band/weka/classifiers/rules/rules.rb
 - lib/bio-band/weka/classifiers/rules/rules_utils.rb
 - lib/bio-band/weka/classifiers/trees/trees.rb
 - lib/bio-band/weka/classifiers/trees/trees_utils.rb

data/lib/bio-band/weka/classifiers/rules/rules.rb

@@ -1,32 +0,0 @@
-$:.unshift File.dirname(__FILE__)
-require 'rules_utils'
-
-module Weka
-	module Classifier
-		module Rules
-      java_import "weka.classifiers.rules.DecisionTable" 
-      java_import "weka.classifiers.rules.DTNB"
-
-      class DecisionTable
-        include Rules_utils
-        class Base < DecisionTable
-          def initialize
-            super
-            init_rules
-          end
-        end
-      end
-
-      class DTNB
-        include Rules_utils
-        class Base < DTNB
-          def initialize
-            super
-            init_rules
-          end
-        end
-      end
-
-    end
-  end
-end