bio-band 0.1.0

data/lib/bio-band/weka/db/DatabaseUtils_mysql

@@ -0,0 +1,280 @@
+# Database settings for MySQL 3.23.x, 4.x
+#
+# General information on database access can be found here:
+# http://weka.wikispaces.com/Databases
+#
+# url:     http://www.mysql.com/
+# jdbc:    http://www.mysql.com/products/connector/j/
+# author:  Fracpete (fracpete at waikato dot ac dot nz)
+# version: $Revision: 5836 $
+
+# JDBC driver (comma-separated list)
+jdbcDriver=org.gjt.mm.mysql.Driver
+
+# database URL
+jdbcURL=jdbc:mysql://server_name:3306/database_name
+
+# specific data types
+# string, getString() = 0;    --> nominal
+# boolean, getBoolean() = 1;  --> nominal
+# double, getDouble() = 2;    --> numeric
+# byte, getByte() = 3;        --> numeric
+# short, getByte()= 4;        --> numeric
+# int, getInteger() = 5;      --> numeric
+# long, getLong() = 6;        --> numeric
+# float, getFloat() = 7;      --> numeric
+# date, getDate() = 8;        --> date
+# text, getString() = 9;      --> string
+# time, getTime() = 10;       --> date
+
+# other options
+CREATE_DOUBLE=DOUBLE
+CREATE_STRING=TEXT
+CREATE_INT=INT
+CREATE_DATE=DATETIME
+DateFormat=yyyy-MM-dd HH:mm:ss
+checkUpperCaseNames=false
+checkLowerCaseNames=false
+checkForTable=true
+
+# All the reserved keywords for this database
+# Based on the keywords listed at the following URL (2009-04-13):
+# http://dev.mysql.com/doc/mysqld-version-reference/en/mysqld-version-reference-reservedwords-5-0.html
+Keywords=\
+  ADD,\
+  ALL,\
+  ALTER,\
+  ANALYZE,\
+  AND,\
+  AS,\
+  ASC,\
+  ASENSITIVE,\
+  BEFORE,\
+  BETWEEN,\
+  BIGINT,\
+  BINARY,\
+  BLOB,\
+  BOTH,\
+  BY,\
+  CALL,\
+  CASCADE,\
+  CASE,\
+  CHANGE,\
+  CHAR,\
+  CHARACTER,\
+  CHECK,\
+  COLLATE,\
+  COLUMN,\
+  COLUMNS,\
+  CONDITION,\
+  CONNECTION,\
+  CONSTRAINT,\
+  CONTINUE,\
+  CONVERT,\
+  CREATE,\
+  CROSS,\
+  CURRENT_DATE,\
+  CURRENT_TIME,\
+  CURRENT_TIMESTAMP,\
+  CURRENT_USER,\
+  CURSOR,\
+  DATABASE,\
+  DATABASES,\
+  DAY_HOUR,\
+  DAY_MICROSECOND,\
+  DAY_MINUTE,\
+  DAY_SECOND,\
+  DEC,\
+  DECIMAL,\
+  DECLARE,\
+  DEFAULT,\
+  DELAYED,\
+  DELETE,\
+  DESC,\
+  DESCRIBE,\
+  DETERMINISTIC,\
+  DISTINCT,\
+  DISTINCTROW,\
+  DIV,\
+  DOUBLE,\
+  DROP,\
+  DUAL,\
+  EACH,\
+  ELSE,\
+  ELSEIF,\
+  ENCLOSED,\
+  ESCAPED,\
+  EXISTS,\
+  EXIT,\
+  EXPLAIN,\
+  FALSE,\
+  FETCH,\
+  FIELDS,\
+  FLOAT,\
+  FLOAT4,\
+  FLOAT8,\
+  FOR,\
+  FORCE,\
+  FOREIGN,\
+  FROM,\
+  FULLTEXT,\
+  GOTO,\
+  GRANT,\
+  GROUP,\
+  HAVING,\
+  HIGH_PRIORITY,\
+  HOUR_MICROSECOND,\
+  HOUR_MINUTE,\
+  HOUR_SECOND,\
+  IF,\
+  IGNORE,\
+  IN,\
+  INDEX,\
+  INFILE,\
+  INNER,\
+  INOUT,\
+  INSENSITIVE,\
+  INSERT,\
+  INT,\
+  INT1,\
+  INT2,\
+  INT3,\
+  INT4,\
+  INT8,\
+  INTEGER,\
+  INTERVAL,\
+  INTO,\
+  IS,\
+  ITERATE,\
+  JOIN,\
+  KEY,\
+  KEYS,\
+  KILL,\
+  LABEL,\
+  LEADING,\
+  LEAVE,\
+  LEFT,\
+  LIKE,\
+  LIMIT,\
+  LINES,\
+  LOAD,\
+  LOCALTIME,\
+  LOCALTIMESTAMP,\
+  LOCK,\
+  LONG,\
+  LONGBLOB,\
+  LONGTEXT,\
+  LOOP,\
+  LOW_PRIORITY,\
+  MATCH,\
+  MEDIUMBLOB,\
+  MEDIUMINT,\
+  MEDIUMTEXT,\
+  MIDDLEINT,\
+  MINUTE_MICROSECOND,\
+  MINUTE_SECOND,\
+  MOD,\
+  MODIFIES,\
+  NATURAL,\
+  NOT,\
+  NO_WRITE_TO_BINLOG,\
+  NULL,\
+  NUMERIC,\
+  ON,\
+  OPTIMIZE,\
+  OPTION,\
+  OPTIONALLY,\
+  OR,\
+  ORDER,\
+  OUT,\
+  OUTER,\
+  OUTFILE,\
+  PRECISION,\
+  PRIMARY,\
+  PRIVILEGES,\
+  PROCEDURE,\
+  PURGE,\
+  READ,\
+  READS,\
+  REAL,\
+  REFERENCES,\
+  REGEXP,\
+  RELEASE,\
+  RENAME,\
+  REPEAT,\
+  REPLACE,\
+  REQUIRE,\
+  RESTRICT,\
+  RETURN,\
+  REVOKE,\
+  RIGHT,\
+  RLIKE,\
+  SCHEMA,\
+  SCHEMAS,\
+  SECOND_MICROSECOND,\
+  SELECT,\
+  SENSITIVE,\
+  SEPARATOR,\
+  SET,\
+  SHOW,\
+  SMALLINT,\
+  SONAME,\
+  SPATIAL,\
+  SPECIFIC,\
+  SQL,\
+  SQLEXCEPTION,\
+  SQLSTATE,\
+  SQLWARNING,\
+  SQL_BIG_RESULT,\
+  SQL_CALC_FOUND_ROWS,\
+  SQL_SMALL_RESULT,\
+  SSL,\
+  STARTING,\
+  STRAIGHT_JOIN,\
+  TABLE,\
+  TABLES,\
+  TERMINATED,\
+  THEN,\
+  TINYBLOB,\
+  TINYINT,\
+  TINYTEXT,\
+  TO,\
+  TRAILING,\
+  TRIGGER,\
+  TRUE,\
+  UNDO,\
+  UNION,\
+  UNIQUE,\
+  UNLOCK,\
+  UNSIGNED,\
+  UPDATE,\
+  UPGRADE,\
+  USAGE,\
+  USE,\
+  USING,\
+  UTC_DATE,\
+  UTC_TIME,\
+  UTC_TIMESTAMP,\
+  VALUES,\
+  VARBINARY,\
+  VARCHAR,\
+  VARCHARACTER,\
+  VARYING,\
+  WHEN,\
+  WHERE,\
+  WHILE,\
+  WITH,\
+  WRITE,\
+  XOR,\
+  YEAR_MONTH,\
+  ZEROFILL
+
+# The character to append to attribute names to avoid exceptions due to
+# clashes between keywords and attribute names
+KeywordsMaskChar=_
+
+#flags for loading and saving instances using DatabaseLoader/Saver
+nominalToStringLimit=50
+idColumn=auto_generated_id
+
+

data/lib/bio-band/weka/db/DatabaseUtils_postgresql

@@ -0,0 +1,594 @@
+# Database settings for PostgreSQL 7.4
+#
+# General information on database access can be found here:
+# http://weka.wikispaces.com/Databases
+#
+# url:     http://www.postgresql.org/
+# jdbc:    http://jdbc.postgresql.org/
+# author:  Fracpete (fracpete at waikato dot ac dot nz)
+# version: $Revision: 7849 $
+
+# JDBC driver (comma-separated list)
+jdbcDriver=org.postgresql.Driver
+
+# database URL
+jdbcURL=jdbc:postgresql://server_name:5432/database_name
+
+# specific data types
+# string, getString() = 0;    --> nominal
+# boolean, getBoolean() = 1;  --> nominal
+# double, getDouble() = 2;    --> numeric
+# byte, getByte() = 3;        --> numeric
+# short, getByte()= 4;        --> numeric
+# int, getInteger() = 5;      --> numeric
+# long, getLong() = 6;        --> numeric
+# float, getFloat() = 7;      --> numeric
+# date, getDate() = 8;        --> date
+# text, getString() = 9;      --> string
+# time, getTime() = 10;       --> date
+
+varchar=0
+text=0
+float4=7
+float8=2
+int4=5
+oid=5
+timestamp=8
+date=8
+
+# other options
+CREATE_DOUBLE=float8
+CREATE_STRING=text
+CREATE_INT=int
+CREATE_DATE=TIMESTAMP
+DateFormat=yyyy-MM-dd HH:mm:ss
+checkUpperCaseNames=false
+checkLowerCaseNames=true
+checkForTable=true
+
+# All the reserved keywords for this database
+# Based on the keywords listed at the following URL (2009-04-13):
+# http://www.postgresql.org/docs/7.4/static/sql-keywords-appendix.html
+Keywords=\
+  ABORT,\
+  ABS,\
+  ABSOLUTE,\
+  ACCESS,\
+  ACTION,\
+  ADA,\
+  ADD,\
+  ADMIN,\
+  AFTER,\
+  AGGREGATE,\
+  ALIAS,\
+  ALL,\
+  ALLOCATE,\
+  ALTER,\
+  ANALYSE,\
+  ANALYZE,\
+  AND,\
+  ANY,\
+  ARE,\
+  ARRAY,\
+  AS,\
+  ASC,\
+  ASENSITIVE,\
+  ASSERTION,\
+  ASSIGNMENT,\
+  ASYMMETRIC,\
+  AT,\
+  ATOMIC,\
+  AUTHORIZATION,\
+  AVG,\
+  BACKWARD,\
+  BEFORE,\
+  BEGIN,\
+  BETWEEN,\
+  BIGINT,\
+  BINARY,\
+  BIT,\
+  BITVAR,\
+  BIT_LENGTH,\
+  BLOB,\
+  BOOLEAN,\
+  BOTH,\
+  BREADTH,\
+  BY,\
+  C,\
+  CACHE,\
+  CALL,\
+  CALLED,\
+  CARDINALITY,\
+  CASCADE,\
+  CASCADED,\
+  CASE,\
+  CAST,\
+  CATALOG,\
+  CATALOG_NAME,\
+  CHAIN,\
+  CHAR,\
+  CHARACTER,\
+  CHARACTERISTICS,\
+  CHARACTER_LENGTH,\
+  CHARACTER_SET_CATALOG,\
+  CHARACTER_SET_NAME,\
+  CHARACTER_SET_SCHEMA,\
+  CHAR_LENGTH,\
+  CHECK,\
+  CHECKED,\
+  CHECKPOINT,\
+  CLASS,\
+  CLASS_ORIGIN,\
+  CLOB,\
+  CLOSE,\
+  CLUSTER,\
+  COALESCE,\
+  COBOL,\
+  COLLATE,\
+  COLLATION,\
+  COLLATION_CATALOG,\
+  COLLATION_NAME,\
+  COLLATION_SCHEMA,\
+  COLUMN,\
+  COLUMN_NAME,\
+  COMMAND_FUNCTION,\
+  COMMAND_FUNCTION_CODE,\
+  COMMENT,\
+  COMMIT,\
+  COMMITTED,\
+  COMPLETION,\
+  CONDITION_NUMBER,\
+  CONNECT,\
+  CONNECTION,\
+  CONNECTION_NAME,\
+  CONSTRAINT,\
+  CONSTRAINTS,\
+  CONSTRAINT_CATALOG,\
+  CONSTRAINT_NAME,\
+  CONSTRAINT_SCHEMA,\
+  CONSTRUCTOR,\
+  CONTAINS,\
+  CONTINUE,\
+  CONVERSION,\
+  CONVERT,\
+  COPY,\
+  CORRESPONDING,\
+  COUNT,\
+  CREATE,\
+  CREATEDB,\
+  CREATEUSER,\
+  CROSS,\
+  CUBE,\
+  CURRENT,\
+  CURRENT_DATE,\
+  CURRENT_PATH,\
+  CURRENT_ROLE,\
+  CURRENT_TIME,\
+  CURRENT_TIMESTAMP,\
+  CURRENT_USER,\
+  CURSOR,\
+  CURSOR_NAME,\
+  CYCLE,\
+  DATA,\
+  DATABASE,\
+  DATE,\
+  DATETIME_INTERVAL_CODE,\
+  DATETIME_INTERVAL_PRECISION,\
+  DAY,\
+  DEALLOCATE,\
+  DEC,\
+  DECIMAL,\
+  DECLARE,\
+  DEFAULT,\
+  DEFAULTS,\
+  DEFERRABLE,\
+  DEFERRED,\
+  DEFINED,\
+  DEFINER,\
+  DELETE,\
+  DELIMITER,\
+  DELIMITERS,\
+  DEPTH,\
+  DEREF,\
+  DESC,\
+  DESCRIBE,\
+  DESCRIPTOR,\
+  DESTROY,\
+  DESTRUCTOR,\
+  DETERMINISTIC,\
+  DIAGNOSTICS,\
+  DICTIONARY,\
+  DISCONNECT,\
+  DISPATCH,\
+  DISTINCT,\
+  DO,\
+  DOMAIN,\
+  DOUBLE,\
+  DROP,\
+  DYNAMIC,\
+  DYNAMIC_FUNCTION,\
+  DYNAMIC_FUNCTION_CODE,\
+  EACH,\
+  ELSE,\
+  ENCODING,\
+  ENCRYPTED,\
+  END,\
+  END-EXEC,\
+  EQUALS,\
+  ESCAPE,\
+  EVERY,\
+  EXCEPT,\
+  EXCEPTION,\
+  EXCLUDING,\
+  EXCLUSIVE,\
+  EXEC,\
+  EXECUTE,\
+  EXISTING,\
+  EXISTS,\
+  EXPLAIN,\
+  EXTERNAL,\
+  EXTRACT,\
+  FALSE,\
+  FETCH,\
+  FINAL,\
+  FIRST,\
+  FLOAT,\
+  FOR,\
+  FORCE,\
+  FOREIGN,\
+  FORTRAN,\
+  FORWARD,\
+  FOUND,\
+  FREE,\
+  FREEZE,\
+  FROM,\
+  FULL,\
+  FUNCTION,\
+  G,\
+  GENERAL,\
+  GENERATED,\
+  GET,\
+  GLOBAL,\
+  GO,\
+  GOTO,\
+  GRANT,\
+  GRANTED,\
+  GROUP,\
+  GROUPING,\
+  HANDLER,\
+  HAVING,\
+  HIERARCHY,\
+  HOLD,\
+  HOST,\
+  HOUR,\
+  IDENTITY,\
+  IGNORE,\
+  ILIKE,\
+  IMMEDIATE,\
+  IMMUTABLE,\
+  IMPLEMENTATION,\
+  IMPLICIT,\
+  IN,\
+  INCLUDING,\
+  INCREMENT,\
+  INDEX,\
+  INDICATOR,\
+  INFIX,\
+  INHERITS,\
+  INITIALIZE,\
+  INITIALLY,\
+  INNER,\
+  INOUT,\
+  INPUT,\
+  INSENSITIVE,\
+  INSERT,\
+  INSTANCE,\
+  INSTANTIABLE,\
+  INSTEAD,\
+  INT,\
+  INTEGER,\
+  INTERSECT,\
+  INTERVAL,\
+  INTO,\
+  INVOKER,\
+  IS,\
+  ISNULL,\
+  ISOLATION,\
+  ITERATE,\
+  JOIN,\
+  K,\
+  KEY,\
+  KEY_MEMBER,\
+  KEY_TYPE,\
+  LANCOMPILER,\
+  LANGUAGE,\
+  LARGE,\
+  LAST,\
+  LATERAL,\
+  LEADING,\
+  LEFT,\
+  LENGTH,\
+  LESS,\
+  LEVEL,\
+  LIKE,\
+  LIMIT,\
+  LISTEN,\
+  LOAD,\
+  LOCAL,\
+  LOCALTIME,\
+  LOCALTIMESTAMP,\
+  LOCATION,\
+  LOCATOR,\
+  LOCK,\
+  LOWER,\
+  M,\
+  MAP,\
+  MATCH,\
+  MAX,\
+  MAXVALUE,\
+  MESSAGE_LENGTH,\
+  MESSAGE_OCTET_LENGTH,\
+  MESSAGE_TEXT,\
+  METHOD,\
+  MIN,\
+  MINUTE,\
+  MINVALUE,\
+  MOD,\
+  MODE,\
+  MODIFIES,\
+  MODIFY,\
+  MODULE,\
+  MONTH,\
+  MORE,\
+  MOVE,\
+  MUMPS,\
+  NAME,\
+  NAMES,\
+  NATIONAL,\
+  NATURAL,\
+  NCHAR,\
+  NCLOB,\
+  NEW,\
+  NEXT,\
+  NO,\
+  NOCREATEDB,\
+  NOCREATEUSER,\
+  NONE,\
+  NOT,\
+  NOTHING,\
+  NOTIFY,\
+  NOTNULL,\
+  NULL,\
+  NULLABLE,\
+  NULLIF,\
+  NUMBER,\
+  NUMERIC,\
+  OBJECT,\
+  OCTET_LENGTH,\
+  OF,\
+  OFF,\
+  OFFSET,\
+  OIDS,\
+  OLD,\
+  ON,\
+  ONLY,\
+  OPEN,\
+  OPERATION,\
+  OPERATOR,\
+  OPTION,\
+  OPTIONS,\
+  OR,\
+  ORDER,\
+  ORDINALITY,\
+  OUT,\
+  OUTER,\
+  OUTPUT,\
+  OVERLAPS,\
+  OVERLAY,\
+  OVERRIDING,\
+  OWNER,\
+  PAD,\
+  PARAMETER,\
+  PARAMETERS,\
+  PARAMETER_MODE,\
+  PARAMETER_NAME,\
+  PARAMETER_ORDINAL_POSITION,\
+  PARAMETER_SPECIFIC_CATALOG,\
+  PARAMETER_SPECIFIC_NAME,\
+  PARAMETER_SPECIFIC_SCHEMA,\
+  PARTIAL,\
+  PASCAL,\
+  PASSWORD,\
+  PATH,\
+  PENDANT,\
+  PLACING,\
+  PLI,\
+  POSITION,\
+  POSTFIX,\
+  PRECISION,\
+  PREFIX,\
+  PREORDER,\
+  PREPARE,\
+  PRESERVE,\
+  PRIMARY,\
+  PRIOR,\
+  PRIVILEGES,\
+  PROCEDURAL,\
+  PROCEDURE,\
+  PUBLIC,\
+  READ,\
+  READS,\
+  REAL,\
+  RECHECK,\
+  RECURSIVE,\
+  REF,\
+  REFERENCES,\
+  REFERENCING,\
+  REINDEX,\
+  RELATIVE,\
+  RENAME,\
+  REPEATABLE,\
+  REPLACE,\
+  RESET,\
+  RESTART,\
+  RESTRICT,\
+  RESULT,\
+  RETURN,\
+  RETURNED_LENGTH,\
+  RETURNED_OCTET_LENGTH,\
+  RETURNED_SQLSTATE,\
+  RETURNS,\
+  REVOKE,\
+  RIGHT,\
+  ROLE,\
+  ROLLBACK,\
+  ROLLUP,\
+  ROUTINE,\
+  ROUTINE_CATALOG,\
+  ROUTINE_NAME,\
+  ROUTINE_SCHEMA,\
+  ROW,\
+  ROWS,\
+  ROW_COUNT,\
+  RULE,\
+  SAVEPOINT,\
+  SCALE,\
+  SCHEMA,\
+  SCHEMA_NAME,\
+  SCOPE,\
+  SCROLL,\
+  SEARCH,\
+  SECOND,\
+  SECTION,\
+  SECURITY,\
+  SELECT,\
+  SELF,\
+  SENSITIVE,\
+  SEQUENCE,\
+  SERIALIZABLE,\
+  SERVER_NAME,\
+  SESSION,\
+  SESSION_USER,\
+  SET,\
+  SETOF,\
+  SETS,\
+  SHARE,\
+  SHOW,\
+  SIMILAR,\
+  SIMPLE,\
+  SIZE,\
+  SMALLINT,\
+  SOME,\
+  SOURCE,\
+  SPACE,\
+  SPECIFIC,\
+  SPECIFICTYPE,\
+  SPECIFIC_NAME,\
+  SQL,\
+  SQLCODE,\
+  SQLERROR,\
+  SQLEXCEPTION,\
+  SQLSTATE,\
+  SQLWARNING,\
+  STABLE,\
+  START,\
+  STATE,\
+  STATEMENT,\
+  STATIC,\
+  STATISTICS,\
+  STDIN,\
+  STDOUT,\
+  STORAGE,\
+  STRICT,\
+  STRUCTURE,\
+  STYLE,\
+  SUBCLASS_ORIGIN,\
+  SUBLIST,\
+  SUBSTRING,\
+  SUM,\
+  SYMMETRIC,\
+  SYSID,\
+  SYSTEM,\
+  SYSTEM_USER,\
+  TABLE,\
+  TABLE_NAME,\
+  TEMP,\
+  TEMPLATE,\
+  TEMPORARY,\
+  TERMINATE,\
+  THAN,\
+  THEN,\
+  TIME,\
+  TIMESTAMP,\
+  TIMEZONE_HOUR,\
+  TIMEZONE_MINUTE,\
+  TO,\
+  TOAST,\
+  TRAILING,\
+  TRANSACTION,\
+  TRANSACTIONS_COMMITTED,\
+  TRANSACTIONS_ROLLED_BACK,\
+  TRANSACTION_ACTIVE,\
+  TRANSFORM,\
+  TRANSFORMS,\
+  TRANSLATE,\
+  TRANSLATION,\
+  TREAT,\
+  TRIGGER,\
+  TRIGGER_CATALOG,\
+  TRIGGER_NAME,\
+  TRIGGER_SCHEMA,\
+  TRIM,\
+  TRUE,\
+  TRUNCATE,\
+  TRUSTED,\
+  TYPE,\
+  UNCOMMITTED,\
+  UNDER,\
+  UNENCRYPTED,\
+  UNION,\
+  UNIQUE,\
+  UNKNOWN,\
+  UNLISTEN,\
+  UNNAMED,\
+  UNNEST,\
+  UNTIL,\
+  UPDATE,\
+  UPPER,\
+  USAGE,\
+  USER,\
+  USER_DEFINED_TYPE_CATALOG,\
+  USER_DEFINED_TYPE_NAME,\
+  USER_DEFINED_TYPE_SCHEMA,\
+  USING,\
+  VACUUM,\
+  VALID,\
+  VALIDATOR,\
+  VALUE,\
+  VALUES,\
+  VARCHAR,\
+  VARIABLE,\
+  VARYING,\
+  VERBOSE,\
+  VERSION,\
+  VIEW,\
+  VOLATILE,\
+  WHEN,\
+  WHENEVER,\
+  WHERE,\
+  WITH,\
+  WITHOUT,\
+  WORK,\
+  WRITE,\
+  YEAR,\
+  ZONE
+
+# The character to append to attribute names to avoid exceptions due to
+# clashes between keywords and attribute names
+KeywordsMaskChar=_
+
+#flags for loading and saving instances using DatabaseLoader/Saver
+nominalToStringLimit=50
+idColumn=auto_generated_id
+
+