bio-assembly 0.0.0
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- data/.document +5 -0
- data/Gemfile +14 -0
- data/Gemfile.lock +22 -0
- data/LICENSE.txt +20 -0
- data/README.rdoc +19 -0
- data/Rakefile +53 -0
- data/VERSION +1 -0
- data/bio-assembly.gemspec +71 -0
- data/data/example1.ace +44901 -0
- data/lib/bio-assembly.rb +169 -0
- data/lib/bio-assembly/contig.rb +97 -0
- data/lib/bio-assembly/read.rb +93 -0
- data/lib/bio-assembly/read/ace.rb +39 -0
- data/test/helper.rb +18 -0
- data/test/test_bio-assembly.rb +78 -0
- metadata +158 -0
metadata
ADDED
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@@ -0,0 +1,158 @@
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--- !ruby/object:Gem::Specification
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name: bio-assembly
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version: !ruby/object:Gem::Version
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hash: 31
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prerelease: false
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segments:
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- 0
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- 0
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- 0
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version: 0.0.0
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11
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platform: ruby
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12
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authors:
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- Chase Miller
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14
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autorequire:
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15
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bindir: bin
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cert_chain: []
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date: 2010-12-27 00:00:00 -05:00
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default_executable:
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dependencies:
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- !ruby/object:Gem::Dependency
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type: :development
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prerelease: false
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name: shoulda
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version_requirements: &id001 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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hash: 3
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31
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segments:
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32
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- 0
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version: "0"
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requirement: *id001
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35
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- !ruby/object:Gem::Dependency
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36
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type: :development
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37
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prerelease: false
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38
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name: bundler
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39
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+
version_requirements: &id002 !ruby/object:Gem::Requirement
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none: false
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41
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requirements:
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42
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- - ~>
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43
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- !ruby/object:Gem::Version
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hash: 23
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segments:
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- 1
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- 0
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- 0
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version: 1.0.0
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50
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requirement: *id002
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51
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- !ruby/object:Gem::Dependency
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52
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type: :development
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53
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prerelease: false
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54
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name: jeweler
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55
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+
version_requirements: &id003 !ruby/object:Gem::Requirement
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56
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none: false
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requirements:
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58
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- - ~>
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- !ruby/object:Gem::Version
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60
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hash: 7
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61
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segments:
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- 1
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- 5
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- 2
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65
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version: 1.5.2
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66
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requirement: *id003
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67
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- !ruby/object:Gem::Dependency
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type: :development
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69
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prerelease: false
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70
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name: rcov
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71
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version_requirements: &id004 !ruby/object:Gem::Requirement
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72
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none: false
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requirements:
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74
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- - ">="
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75
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- !ruby/object:Gem::Version
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76
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hash: 3
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77
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segments:
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78
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+
- 0
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79
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version: "0"
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80
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requirement: *id004
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81
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+
- !ruby/object:Gem::Dependency
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82
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type: :development
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83
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prerelease: false
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84
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+
name: bio
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85
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+
version_requirements: &id005 !ruby/object:Gem::Requirement
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86
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none: false
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87
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requirements:
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88
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+
- - ">="
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89
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- !ruby/object:Gem::Version
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90
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hash: 5
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91
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segments:
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- 1
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93
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- 4
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94
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- 1
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95
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version: 1.4.1
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96
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requirement: *id005
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97
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description: provides functionality to parse, write, and manipulate assembly data
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98
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email: chmille4@gmail.com
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99
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executables: []
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100
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101
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extensions: []
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102
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103
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extra_rdoc_files:
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104
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- LICENSE.txt
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105
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- README.rdoc
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106
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files:
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107
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- .document
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108
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- Gemfile
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109
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- Gemfile.lock
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|
110
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- LICENSE.txt
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111
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- README.rdoc
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112
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- Rakefile
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113
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- VERSION
|
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114
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- bio-assembly.gemspec
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115
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- data/example1.ace
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116
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- lib/bio-assembly.rb
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117
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- lib/bio-assembly/contig.rb
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118
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- lib/bio-assembly/read.rb
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119
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- lib/bio-assembly/read/ace.rb
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120
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- test/helper.rb
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121
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- test/test_bio-assembly.rb
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122
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has_rdoc: true
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123
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homepage: http://github.com/chmille4/bioruby-assembly
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124
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licenses:
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125
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- MIT
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126
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post_install_message:
|
|
127
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rdoc_options: []
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|
128
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+
|
|
129
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require_paths:
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|
130
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- lib
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|
131
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required_ruby_version: !ruby/object:Gem::Requirement
|
|
132
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none: false
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|
133
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requirements:
|
|
134
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- - ">="
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135
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- !ruby/object:Gem::Version
|
|
136
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hash: 3
|
|
137
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segments:
|
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138
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- 0
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139
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version: "0"
|
|
140
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required_rubygems_version: !ruby/object:Gem::Requirement
|
|
141
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none: false
|
|
142
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requirements:
|
|
143
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- - ">="
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144
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- !ruby/object:Gem::Version
|
|
145
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hash: 3
|
|
146
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segments:
|
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147
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- 0
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148
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version: "0"
|
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149
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requirements: []
|
|
150
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+
|
|
151
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rubyforge_project:
|
|
152
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rubygems_version: 1.3.7
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|
153
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+
signing_key:
|
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154
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specification_version: 3
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155
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summary: BioRuby Assembly plugin
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|
156
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+
test_files:
|
|
157
|
+
- test/helper.rb
|
|
158
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+
- test/test_bio-assembly.rb
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