bio-alignment 0.0.1.alpha → 0.0.2
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- data/Gemfile +4 -4
- data/README.md +73 -4
- data/Rakefile +5 -6
- data/VERSION +1 -1
- data/doc/bio-alignment-design.md +101 -9
- data/features/codon-feature.rb +48 -0
- data/features/codon.feature +14 -0
- data/features/pal2nal-feature.rb +44 -0
- data/features/pal2nal.feature +10 -0
- data/lib/bio-alignment.rb +2 -0
- data/lib/bio-alignment/alignment.rb +22 -0
- data/lib/bio-alignment/codonsequence.rb +87 -0
- data/lib/bio-alignment/sequence.rb +39 -0
- data/spec/bio-alignment_spec.rb +27 -2
- data/test/data/fasta/codon/aa-alignment.fa +84 -0
- data/test/data/fasta/codon/codon-alignment.fa +264 -0
- data/test/data/fasta/codon/nt.fa +24 -0
- data/test/data/regression/aa-aln.fa +24 -0
- data/test/data/regression/nt-aln.fa +24 -0
- data/test/data/regression/pal2nal.fa +24 -0
- metadata +71 -27
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@@ -0,0 +1,39 @@
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1
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+
module Bio
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2
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+
module BioAlignment
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3
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4
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# Simple element that can be queried
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5
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class Element
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6
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def initialize c
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7
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@c = c
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8
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end
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9
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+
def gap?
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10
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@c == '-'
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11
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end
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12
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end
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13
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+
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14
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# A Sequence is a simple container for String sequences/lists
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15
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#
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16
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class Sequence
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17
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include Enumerable
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18
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19
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attr_reader :id, :seq
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20
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def initialize id, seq
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21
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@id = id
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22
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@seq = seq
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23
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end
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24
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25
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def [] index
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26
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@seq[index]
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27
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end
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28
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29
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def each
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30
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@seq.each_char { | c | yield Element.new(c) }
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31
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end
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32
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+
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33
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def to_s
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34
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@seq.to_s
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35
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end
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36
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+
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37
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+
end
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38
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end
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39
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end
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data/spec/bio-alignment_spec.rb
CHANGED
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@@ -1,7 +1,32 @@
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1
1
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require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
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2
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3
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require 'bigbio'
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4
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include Bio::BioAlignment # Namespace
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5
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3
6
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describe "BioAlignment" do
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4
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-
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5
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-
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7
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+
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8
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it "should allow for adding FastaRecords that contain and id and seq" do
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9
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aln = Alignment.new
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10
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+
fasta = FastaReader.new('test/data/fasta/codon/codon-alignment.fa')
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11
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+
fasta.each do | rec |
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12
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aln.sequences << rec
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13
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+
end
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14
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+
aln.sequences.first.id.should == "ZK909.2e"
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15
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aln.sequences.first.seq[0..15].should == "atgcccactcgattgg"
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16
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+
end
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17
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+
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18
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it "should allow CodonSequence inputs" do
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19
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aln = Alignment.new
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20
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fasta = FastaReader.new('test/data/fasta/codon/codon-alignment.fa')
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21
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fasta.each do | rec |
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22
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aln.sequences << CodonSequence.new(rec.id, rec.seq)
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23
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+
end
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24
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+
aln.sequences.first.id.should == "ZK909.2e"
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25
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aln.sequences.first.to_s[0..46].should == "atg ccc act cga ttg gat att gtt gga aac ctt cag"
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26
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# sequence, however, is no String!
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27
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aln.sequences.first.seq[2] == Codon.new('act')
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28
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+
# and elements may carry a pay load, here an amino acid value
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29
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+
aln.sequences.first.seq[0].to_aa.should == "M"
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30
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+
aln.sequences.first.seq[2].to_aa.should == "T"
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6
31
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end
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7
32
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end
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@@ -0,0 +1,84 @@
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1
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>ZK909.2e
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2
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+
MPTRLDIVGNLQFSSSTDNGDEDQEADVTACFVLPSPSSFSKLSILDDPVEDFKEFLDKAREDFKQRWEN
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3
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+
PAQNTACLDDFDRIKTLGTGSFGRVMLVKHKQSGNYYAMKILDKQKVVKLKQVEHTLNEKRILQAIDFPF
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4
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+
LVNMTFSFKDNSNLYMVLEFISGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHSLDLIYRDLKPENL
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5
|
+
LIDSTGYLKITDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ
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6
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+
PIQIYEKIVSGKVKFPSHFSNELKDLLKNLLQVDLTKRYGNLKNGVADIKNHKWFGSTDWIAIYQKKITP
|
|
7
|
+
PSFSKGESNGRLFEALYPRVDGPADTRHFVEEVQEPTEFVIAATPQLEELFVEF
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8
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+
>ZK909.2j
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|
9
|
+
-------MGNAASGGSSGGGGSARRGNGGGNNGSDYNNAMVFSNGRLAAAETIKEFLDKAREDFKQRWEN
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10
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+
PAQNTACLDDFDRIKTLGTGSFGRVMLVKHKQSGNYYAMKILDKQKVVKLKQVEHTLNEKRILQAIDFPF
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11
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+
LVNMTFSFKDNSNLYMVLEFISGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHSLDLIYRDLKPENL
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12
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+
LIDSTGYLKITDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ
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13
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+
PIQIYEKIVSGKVKFPSHFSNELKDLLKNLLQVDLTKRYGNLKNGVADIKNHKWFGSTDWIAIYQKKITP
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14
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+
PSFSKGESNGRLFEALYPRVDGPADTRHFVEEVQEPTEFVIAATPQLEELFVEF
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15
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+
>ZK909.2l
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16
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+
MPTRLDIVGNLQFSSSTDNGDEDQEADVTACFVLPSPSSFSKLSILDDPVEDFKEFLDKAREDFKQRWEN
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17
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+
PAQNTACLDDFDRIKTLGTGSFGRVMLVKHKQSGNYYAMKILDKQKVVKLKQVEHTLNEKRILQAIDFPF
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18
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+
LVNMTFSFKDNSNLYMVLEFISGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHSLDLIYRDLKPENL
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19
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+
LIDSTGYLKITDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ
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20
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+
PIQIYEKIVSGKVKFPSHFSNELKDLLKNLLQVDLTKRYGNLKNGVADIKNHKWFGSTDWIAIYQKKIEA
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21
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P--------------FLPKCRGPGDASNFDDYEEEP--LRISGTEKCAKEFAEF
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22
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>ZK909.2k
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23
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-----MLSSSFFRGSMKERKNEALKNHKSKYISGGYLE-------------TVKEFLDKAREDFKQRWEN
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24
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PAQNTACLDDFDRIKTLGTGSFGRVMLVKHKQSGNYYAMKILDKQKVVKLKQVEHTLNEKRILQAIDFPF
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25
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+
LVNMTFSFKDNSNLYMVLEFISGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHSLDLIYRDLKPENL
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26
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LIDSTGYLKITDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ
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27
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+
PIQIYEKIVSGKVKFPSHFSNELKDLLKNLLQVDLTKRYGNLKNGVADIKNHKWFGSTDWIAIYQKKITP
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28
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+
PSFSKGESNGRLFEALYPRVDGPADTRHFVEEVQEPTEFVIAATPQLEELFVEF
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29
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+
>ZK909.2h
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30
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+
-------MGNAASGGSSGGGGSARRGNGGGNNGSDYNNAMVFSNGRLAAAETIKEFLDKAREDFKQRWEN
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31
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+
PAQNTACLDDFDRIKTLGTGSFGRVMLVKHKQSGNYYAMKILDKQKVVKLKQVEHTLNEKRILQAIDFPF
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|
32
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+
LVNMTFSFKDNSNLYMVLEFISGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHSLDLIYRDLKPENL
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|
33
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+
LIDSTGYLKITDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ
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|
34
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+
PIQIYEKIVSGKVKFPSHFSNELKDLLKNLLQVDLTKRYGNLKNGVADIKNHKWFGSTDWIAIYQKKIEA
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|
35
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+
P--------------FLPKCRGPGDASNFDDYEEEP--LRISGTEKCAKEFAEF
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|
36
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+
>ZK909.2b
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|
37
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+
-------MLKFLKPKSSDEGSSKDNKNSA----------------------SLKEFLDKAREDFKQRWEN
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|
38
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+
PAQNTACLDDFDRIKTLGTGSFGRVMLVKHKQSGNYYAMKILDKQKVVKLKQVEHTLNEKRILQAIDFPF
|
|
39
|
+
LVNMTFSFKDNSNLYMVLEFISGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHSLDLIYRDLKPENL
|
|
40
|
+
LIDSTGYLKITDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ
|
|
41
|
+
PIQIYEKIVSGKVKFPSHFSNELKDLLKNLLQVDLTKRYGNLKNGVADIKNHKWFGSTDWIAIYQKKITP
|
|
42
|
+
PSFSKGESNGRLFEALYPRVDGPADTRHFVEEVQEPTEFVIAATPQLEELFVEF
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43
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+
>ZK909.2f
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44
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-----MLSSSFFRGSMKERKNEALKNHKSKYISGGYLE-------------TVKEFLDKAREDFKQRWEN
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45
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+
PAQNTACLDDFDRIKTLGTGSFGRVMLVKHKQSGNYYAMKILDKQKVVKLKQVEHTLNEKRILQAIDFPF
|
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46
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+
LVNMTFSFKDNSNLYMVLEFISGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHSLDLIYRDLKPENL
|
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47
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+
LIDSTGYLKITDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ
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48
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+
PIQIYEKIVSGKVKFPSHFSNELKDLLKNLLQVDLTKRYGNLKNGVADIKNHKWFGSTDWIAIYQKKIEA
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49
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+
P--------------FLPKCRGPGDASNFDDYEEEP--LRISGTEKCAKEFAEF
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50
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+
>ZK909.2d
|
|
51
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+
-------MSSSSNKKVQVK--------------------------------FFKEFLDKAREDFKQRWEN
|
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52
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+
PAQNTACLDDFDRIKTLGTGSFGRVMLVKHKQSGNYYAMKILDKQKVVKLKQVEHTLNEKRILQAIDFPF
|
|
53
|
+
LVNMTFSFKDNSNLYMVLEFISGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHSLDLIYRDLKPENL
|
|
54
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+
LIDSTGYLKITDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ
|
|
55
|
+
PIQIYEKIVSGKVKFPSHFSNELKDLLKNLLQVDLTKRYGNLKNGVADIKNHKWFGSTDWIAIYQKKITP
|
|
56
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+
PSFSKGESNGRLFEALYPRVDGPADTRHFVEEVQEPTEFVIAATPQLEELFVEF
|
|
57
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+
>ZK909.2a
|
|
58
|
+
-------MLKFLKPKSSDEGSSKDNKNSA----------------------SLKEFLDKAREDFKQRWEN
|
|
59
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+
PAQNTACLDDFDRIKTLGTGSFGRVMLVKHKQSGNYYAMKILDKQKVVKLKQVEHTLNEKRILQAIDFPF
|
|
60
|
+
LVNMTFSFKDNSNLYMVLEFISGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHSLDLIYRDLKPENL
|
|
61
|
+
LIDSTGYLKITDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ
|
|
62
|
+
PIQIYEKIVSGKVKFPSHFSNELKDLLKNLLQVDLTKRYGNLKNGVADIKNHKWFGSTDWIAIYQKKIEA
|
|
63
|
+
P--------------FLPKCRGPGDASNFDDYEEEP--LRISGTEKCAKEFAEF
|
|
64
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+
>ZK909.2i
|
|
65
|
+
-------MGSMVF--------------------------------------IVKEFLDKAREDFKQRWEN
|
|
66
|
+
PAQNTACLDDFDRIKTLGTGSFGRVMLVKHKQSGNYYAMKILDKQKVVKLKQVEHTLNEKRILQAIDFPF
|
|
67
|
+
LVNMTFSFKDNSNLYMVLEFISGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHSLDLIYRDLKPENL
|
|
68
|
+
LIDSTGYLKITDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ
|
|
69
|
+
PIQIYEKIVSGKVKFPSHFSNELKDLLKNLLQVDLTKRYGNLKNGVADIKNHKWFGSTDWIAIYQKKITP
|
|
70
|
+
PSFSKGESNGRLFEALYPRVDGPADTRHFVEEVQEPTEFVIAATPQLEELFVEF
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|
71
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+
>ZK909.2m
|
|
72
|
+
-------MSSSSNKKVQVK--------------------------------FFKEFLDKAREDFKQRWEN
|
|
73
|
+
PAQNTACLDDFDRIKTLGTGSFGRVMLVKHKQSGNYYAMKILDKQKVVKLKQVEHTLNEKRILQAIDFPF
|
|
74
|
+
LVNMTFSFKDNSNLYMVLEFISGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHSLDLIYRDLKPENL
|
|
75
|
+
LIDSTGYLKITDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ
|
|
76
|
+
PIQIYEKIVSGKVKFPSHFSNELKDLLKNLLQVDLTKRYGNLKNGVADIKNHKWFGSTDWIAIYQKKIEA
|
|
77
|
+
P--------------FLPKCRGPGDASNFDDYEEEP--LRISGTEKCAKEFAEF
|
|
78
|
+
>ZK909.2g
|
|
79
|
+
-------MGSMVF--------------------------------------IVKEFLDKAREDFKQRWEN
|
|
80
|
+
PAQNTACLDDFDRIKTLGTGSFGRVMLVKHKQSGNYYAMKILDKQKVVKLKQVEHTLNEKRILQAIDFPF
|
|
81
|
+
LVNMTFSFKDNSNLYMVLEFISGGEMFSHLRRIGRFSEPHSRFYAAQIVLAFEYLHSLDLIYRDLKPENL
|
|
82
|
+
LIDSTGYLKITDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ
|
|
83
|
+
PIQIYEKIVSGKVKFPSHFSNELKDLLKNLLQVDLTKRYGNLKNGVADIKNHKWFGSTDWIAIYQKKIEA
|
|
84
|
+
P--------------FLPKCRGPGDASNFDDYEEEP--LRISGTEKCAKEFAEF
|
|
@@ -0,0 +1,264 @@
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1
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+
>ZK909.2e
|
|
2
|
+
atgcccactcgattggatattgttggaaaccttcagttctctagctcaactgataacgga
|
|
3
|
+
gatgaagaccaggaagctgacgtgacagcctgctttgtgcttccttctccatcgagtttt
|
|
4
|
+
tctaaattgagcatcttggatgatcctgtggaggatttcaaagaattcctggacaaggca
|
|
5
|
+
cgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgac
|
|
6
|
+
tttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcat
|
|
7
|
+
aagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactc
|
|
8
|
+
aagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgttt
|
|
9
|
+
ttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattc
|
|
10
|
+
atctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccac
|
|
11
|
+
tcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctc
|
|
12
|
+
atctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatc
|
|
13
|
+
accgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacacca
|
|
14
|
+
gaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgg
|
|
15
|
+
gcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcag
|
|
16
|
+
ccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcg
|
|
17
|
+
aatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggt
|
|
18
|
+
aacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactgg
|
|
19
|
+
attgccatctatcagaagaagatcacaccgccctcgttctccaaaggagaatccaatggt
|
|
20
|
+
cgactgttcgaggctctgtatccacgtgtcgatggtcccgccgacacacgtcattttgtg
|
|
21
|
+
gaagaggtgcaagagccgactgagtttgtgatcgccgcgactccacagttggaagagctg
|
|
22
|
+
ttcgtcgagttt
|
|
23
|
+
>ZK909.2j
|
|
24
|
+
---------------------atgggaaatgcggcatctggcggatcttctggaggtggg
|
|
25
|
+
ggatcggcacgacgtggaaacggtggcggaaacaacggtagtgactataacaatgcgatg
|
|
26
|
+
gttttctcgaatggacgtttagccgcggcagagacaatcaaagaattcctggacaaggca
|
|
27
|
+
cgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgac
|
|
28
|
+
tttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcat
|
|
29
|
+
aagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactc
|
|
30
|
+
aagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgttt
|
|
31
|
+
ttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattc
|
|
32
|
+
atctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccac
|
|
33
|
+
tcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctc
|
|
34
|
+
atctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatc
|
|
35
|
+
accgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacacca
|
|
36
|
+
gaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgg
|
|
37
|
+
gcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcag
|
|
38
|
+
ccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcg
|
|
39
|
+
aatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggt
|
|
40
|
+
aacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactgg
|
|
41
|
+
attgccatctatcagaagaagatcacaccgccctcgttctccaaaggagaatccaatggt
|
|
42
|
+
cgactgttcgaggctctgtatccacgtgtcgatggtcccgccgacacacgtcattttgtg
|
|
43
|
+
gaagaggtgcaagagccgactgagtttgtgatcgccgcgactccacagttggaagagctg
|
|
44
|
+
ttcgtcgagttt
|
|
45
|
+
>ZK909.2l
|
|
46
|
+
atgcccactcgattggatattgttggaaaccttcagttctctagctcaactgataacgga
|
|
47
|
+
gatgaagaccaggaagctgacgtgacagcctgctttgtgcttccttctccatcgagtttt
|
|
48
|
+
tctaaattgagcatcttggatgatcctgtggaggatttcaaagaattcctggacaaggca
|
|
49
|
+
cgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgac
|
|
50
|
+
tttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcat
|
|
51
|
+
aagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactc
|
|
52
|
+
aagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgttt
|
|
53
|
+
ttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattc
|
|
54
|
+
atctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccac
|
|
55
|
+
tcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctc
|
|
56
|
+
atctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatc
|
|
57
|
+
accgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacacca
|
|
58
|
+
gaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgg
|
|
59
|
+
gcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcag
|
|
60
|
+
ccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcg
|
|
61
|
+
aatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggt
|
|
62
|
+
aacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactgg
|
|
63
|
+
attgccatctatcagaagaagatcgaagcaccg---------------------------
|
|
64
|
+
---------------ttccttccaaaatgccgtggccctggcgacgcatctaactttgac
|
|
65
|
+
gactacgaggaagagccg------cttcgtatctcgggcaccgagaaatgcgccaaagag
|
|
66
|
+
tttgccgagttt
|
|
67
|
+
>ZK909.2k
|
|
68
|
+
---------------atgctgtcctcgtcgtttttccgcggcagtatgaaagaacggaag
|
|
69
|
+
aatgaggcgttgaagaatcacaaaagtaaatacatatcaggaggttatttagaa------
|
|
70
|
+
---------------------------------actgtcaaagaattcctggacaaggca
|
|
71
|
+
cgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgac
|
|
72
|
+
tttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcat
|
|
73
|
+
aagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactc
|
|
74
|
+
aagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgttt
|
|
75
|
+
ttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattc
|
|
76
|
+
atctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccac
|
|
77
|
+
tcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctc
|
|
78
|
+
atctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatc
|
|
79
|
+
accgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacacca
|
|
80
|
+
gaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgg
|
|
81
|
+
gcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcag
|
|
82
|
+
ccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcg
|
|
83
|
+
aatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggt
|
|
84
|
+
aacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactgg
|
|
85
|
+
attgccatctatcagaagaagatcacaccgccctcgttctccaaaggagaatccaatggt
|
|
86
|
+
cgactgttcgaggctctgtatccacgtgtcgatggtcccgccgacacacgtcattttgtg
|
|
87
|
+
gaagaggtgcaagagccgactgagtttgtgatcgccgcgactccacagttggaagagctg
|
|
88
|
+
ttcgtcgagttt
|
|
89
|
+
>ZK909.2h
|
|
90
|
+
---------------------atgggaaatgcggcatctggcggatcttctggaggtggg
|
|
91
|
+
ggatcggcacgacgtggaaacggtggcggaaacaacggtagtgactataacaatgcgatg
|
|
92
|
+
gttttctcgaatggacgtttagccgcggcagagacaatcaaagaattcctggacaaggca
|
|
93
|
+
cgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgac
|
|
94
|
+
tttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcat
|
|
95
|
+
aagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactc
|
|
96
|
+
aagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgttt
|
|
97
|
+
ttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattc
|
|
98
|
+
atctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccac
|
|
99
|
+
tcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctc
|
|
100
|
+
atctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatc
|
|
101
|
+
accgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacacca
|
|
102
|
+
gaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgg
|
|
103
|
+
gcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcag
|
|
104
|
+
ccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcg
|
|
105
|
+
aatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggt
|
|
106
|
+
aacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactgg
|
|
107
|
+
attgccatctatcagaagaagatcgaagcaccg---------------------------
|
|
108
|
+
---------------ttccttccaaaatgccgtggccctggcgacgcatctaactttgac
|
|
109
|
+
gactacgaggaagagccg------cttcgtatctcgggcaccgagaaatgcgccaaagag
|
|
110
|
+
tttgccgagttt
|
|
111
|
+
>ZK909.2b
|
|
112
|
+
---------------------atgctcaagtttctgaaaccaaaatcgtcggacgaggga
|
|
113
|
+
agctcgaaggacaacaagaactcggcg---------------------------------
|
|
114
|
+
---------------------------------tcgctcaaagaattcctggacaaggca
|
|
115
|
+
cgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgac
|
|
116
|
+
tttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcat
|
|
117
|
+
aagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactc
|
|
118
|
+
aagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgttt
|
|
119
|
+
ttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattc
|
|
120
|
+
atctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccac
|
|
121
|
+
tcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctc
|
|
122
|
+
atctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatc
|
|
123
|
+
accgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacacca
|
|
124
|
+
gaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgg
|
|
125
|
+
gcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcag
|
|
126
|
+
ccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcg
|
|
127
|
+
aatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggt
|
|
128
|
+
aacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactgg
|
|
129
|
+
attgccatctatcagaagaagatcacaccgccctcgttctccaaaggagaatccaatggt
|
|
130
|
+
cgactgttcgaggctctgtatccacgtgtcgatggtcccgccgacacacgtcattttgtg
|
|
131
|
+
gaagaggtgcaagagccgactgagtttgtgatcgccgcgactccacagttggaagagctg
|
|
132
|
+
ttcgtcgagttt
|
|
133
|
+
>ZK909.2f
|
|
134
|
+
---------------atgctgtcctcgtcgtttttccgcggcagtatgaaagaacggaag
|
|
135
|
+
aatgaggcgttgaagaatcacaaaagtaaatacatatcaggaggttatttagaa------
|
|
136
|
+
---------------------------------actgtcaaagaattcctggacaaggca
|
|
137
|
+
cgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgac
|
|
138
|
+
tttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcat
|
|
139
|
+
aagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactc
|
|
140
|
+
aagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgttt
|
|
141
|
+
ttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattc
|
|
142
|
+
atctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccac
|
|
143
|
+
tcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctc
|
|
144
|
+
atctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatc
|
|
145
|
+
accgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacacca
|
|
146
|
+
gaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgg
|
|
147
|
+
gcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcag
|
|
148
|
+
ccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcg
|
|
149
|
+
aatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggt
|
|
150
|
+
aacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactgg
|
|
151
|
+
attgccatctatcagaagaagatcgaagcaccg---------------------------
|
|
152
|
+
---------------ttccttccaaaatgccgtggccctggcgacgcatctaactttgac
|
|
153
|
+
gactacgaggaagagccg------cttcgtatctcgggcaccgagaaatgcgccaaagag
|
|
154
|
+
tttgccgagttt
|
|
155
|
+
>ZK909.2d
|
|
156
|
+
---------------------atgtcgtccagtagcaataaaaaagtgcaagtcaag---
|
|
157
|
+
------------------------------------------------------------
|
|
158
|
+
---------------------------------tttttcaaagaattcctggacaaggca
|
|
159
|
+
cgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgac
|
|
160
|
+
tttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcat
|
|
161
|
+
aagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactc
|
|
162
|
+
aagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgttt
|
|
163
|
+
ttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattc
|
|
164
|
+
atctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccac
|
|
165
|
+
tcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctc
|
|
166
|
+
atctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatc
|
|
167
|
+
accgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacacca
|
|
168
|
+
gaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgg
|
|
169
|
+
gcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcag
|
|
170
|
+
ccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcg
|
|
171
|
+
aatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggt
|
|
172
|
+
aacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactgg
|
|
173
|
+
attgccatctatcagaagaagatcacaccgccctcgttctccaaaggagaatccaatggt
|
|
174
|
+
cgactgttcgaggctctgtatccacgtgtcgatggtcccgccgacacacgtcattttgtg
|
|
175
|
+
gaagaggtgcaagagccgactgagtttgtgatcgccgcgactccacagttggaagagctg
|
|
176
|
+
ttcgtcgagttt
|
|
177
|
+
>ZK909.2a
|
|
178
|
+
---------------------atgctcaagtttctgaaaccaaaatcgtcggacgaggga
|
|
179
|
+
agctcgaaggacaacaagaactcggcg---------------------------------
|
|
180
|
+
---------------------------------tcgctcaaagaattcctggacaaggca
|
|
181
|
+
cgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgac
|
|
182
|
+
tttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcat
|
|
183
|
+
aagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactc
|
|
184
|
+
aagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgttt
|
|
185
|
+
ttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattc
|
|
186
|
+
atctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccac
|
|
187
|
+
tcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctc
|
|
188
|
+
atctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatc
|
|
189
|
+
accgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacacca
|
|
190
|
+
gaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgg
|
|
191
|
+
gcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcag
|
|
192
|
+
ccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcg
|
|
193
|
+
aatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggt
|
|
194
|
+
aacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactgg
|
|
195
|
+
attgccatctatcagaagaagatcgaagcaccg---------------------------
|
|
196
|
+
---------------ttccttccaaaatgccgtggccctggcgacgcatctaactttgac
|
|
197
|
+
gactacgaggaagagccg------cttcgtatctcgggcaccgagaaatgcgccaaagag
|
|
198
|
+
tttgccgagttt
|
|
199
|
+
>ZK909.2i
|
|
200
|
+
---------------------atgggatccatggtgttc---------------------
|
|
201
|
+
------------------------------------------------------------
|
|
202
|
+
---------------------------------attgtcaaagaattcctggacaaggca
|
|
203
|
+
cgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgac
|
|
204
|
+
tttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcat
|
|
205
|
+
aagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactc
|
|
206
|
+
aagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgttt
|
|
207
|
+
ttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattc
|
|
208
|
+
atctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccac
|
|
209
|
+
tcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctc
|
|
210
|
+
atctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatc
|
|
211
|
+
accgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacacca
|
|
212
|
+
gaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgg
|
|
213
|
+
gcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcag
|
|
214
|
+
ccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcg
|
|
215
|
+
aatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggt
|
|
216
|
+
aacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactgg
|
|
217
|
+
attgccatctatcagaagaagatcacaccgccctcgttctccaaaggagaatccaatggt
|
|
218
|
+
cgactgttcgaggctctgtatccacgtgtcgatggtcccgccgacacacgtcattttgtg
|
|
219
|
+
gaagaggtgcaagagccgactgagtttgtgatcgccgcgactccacagttggaagagctg
|
|
220
|
+
ttcgtcgagttt
|
|
221
|
+
>ZK909.2m
|
|
222
|
+
---------------------atgtcgtccagtagcaataaaaaagtgcaagtcaag---
|
|
223
|
+
------------------------------------------------------------
|
|
224
|
+
---------------------------------tttttcaaagaattcctggacaaggca
|
|
225
|
+
cgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgac
|
|
226
|
+
tttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcat
|
|
227
|
+
aagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactc
|
|
228
|
+
aagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgttt
|
|
229
|
+
ttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattc
|
|
230
|
+
atctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccac
|
|
231
|
+
tcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctc
|
|
232
|
+
atctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatc
|
|
233
|
+
accgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacacca
|
|
234
|
+
gaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgg
|
|
235
|
+
gcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcag
|
|
236
|
+
ccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcg
|
|
237
|
+
aatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggt
|
|
238
|
+
aacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactgg
|
|
239
|
+
attgccatctatcagaagaagatcgaagcaccg---------------------------
|
|
240
|
+
---------------ttccttccaaaatgccgtggccctggcgacgcatctaactttgac
|
|
241
|
+
gactacgaggaagagccg------cttcgtatctcgggcaccgagaaatgcgccaaagag
|
|
242
|
+
tttgccgagttt
|
|
243
|
+
>ZK909.2g
|
|
244
|
+
---------------------atgggatccatggtgttc---------------------
|
|
245
|
+
------------------------------------------------------------
|
|
246
|
+
---------------------------------attgtcaaagaattcctggacaaggca
|
|
247
|
+
cgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgac
|
|
248
|
+
tttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcat
|
|
249
|
+
aagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactc
|
|
250
|
+
aagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgttt
|
|
251
|
+
ttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattc
|
|
252
|
+
atctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccac
|
|
253
|
+
tcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctc
|
|
254
|
+
atctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatc
|
|
255
|
+
accgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacacca
|
|
256
|
+
gaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgg
|
|
257
|
+
gcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcag
|
|
258
|
+
ccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcg
|
|
259
|
+
aatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggt
|
|
260
|
+
aacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactgg
|
|
261
|
+
attgccatctatcagaagaagatcgaagcaccg---------------------------
|
|
262
|
+
---------------ttccttccaaaatgccgtggccctggcgacgcatctaactttgac
|
|
263
|
+
gactacgaggaagagccg------cttcgtatctcgggcaccgagaaatgcgccaaagag
|
|
264
|
+
tttgccgagttt
|
|
@@ -0,0 +1,24 @@
|
|
|
1
|
+
>ZK909.2e
|
|
2
|
+
atgcccactcgattggatattgttggaaaccttcagttctctagctcaactgataacggagatgaagaccaggaagctgacgtgacagcctgctttgtgcttccttctccatcgagtttttctaaattgagcatcttggatgatcctgtggaggatttcaaagaattcctggacaaggcacgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgactttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcataagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactcaagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgtttttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattcatctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccactcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctcatctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatcaccgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacaccagaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgggcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcagccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcgaatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggtaacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactggattgccatctatcagaagaagatcacaccgccctcgttctccaaaggagaatccaatggtcgactgttcgaggctctgtatccacgtgtcgatggtcccgccgacacacgtcattttgtggaagaggtgcaagagccgactgagtttgtgatcgccgcgactccacagttggaagagctgttcgtcgagttttag
|
|
3
|
+
>ZK909.2j
|
|
4
|
+
atgggaaatgcggcatctggcggatcttctggaggtgggggatcggcacgacgtggaaacggtggcggaaacaacggtagtgactataacaatgcgatggttttctcgaatggacgtttagccgcggcagagacaatcaaagaattcctggacaaggcacgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgactttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcataagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactcaagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgtttttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattcatctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccactcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctcatctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatcaccgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacaccagaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgggcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcagccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcgaatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggtaacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactggattgccatctatcagaagaagatcacaccgccctcgttctccaaaggagaatccaatggtcgactgttcgaggctctgtatccacgtgtcgatggtcccgccgacacacgtcattttgtggaagaggtgcaagagccgactgagtttgtgatcgccgcgactccacagttggaagagctgttcgtcgagttttag
|
|
5
|
+
>ZK909.2l
|
|
6
|
+
atgcccactcgattggatattgttggaaaccttcagttctctagctcaactgataacggagatgaagaccaggaagctgacgtgacagcctgctttgtgcttccttctccatcgagtttttctaaattgagcatcttggatgatcctgtggaggatttcaaagaattcctggacaaggcacgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgactttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcataagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactcaagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgtttttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattcatctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccactcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctcatctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatcaccgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacaccagaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgggcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcagccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcgaatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggtaacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactggattgccatctatcagaagaagatcgaagcaccgttccttccaaaatgccgtggccctggcgacgcatctaactttgacgactacgaggaagagccgcttcgtatctcgggcaccgagaaatgcgccaaagagtttgccgagttttaa
|
|
7
|
+
>ZK909.2k
|
|
8
|
+
atgctgtcctcgtcgtttttccgcggcagtatgaaagaacggaagaatgaggcgttgaagaatcacaaaagtaaatacatatcaggaggttatttagaaactgtcaaagaattcctggacaaggcacgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgactttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcataagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactcaagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgtttttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattcatctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccactcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctcatctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatcaccgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacaccagaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgggcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcagccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcgaatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggtaacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactggattgccatctatcagaagaagatcacaccgccctcgttctccaaaggagaatccaatggtcgactgttcgaggctctgtatccacgtgtcgatggtcccgccgacacacgtcattttgtggaagaggtgcaagagccgactgagtttgtgatcgccgcgactccacagttggaagagctgttcgtcgagttttag
|
|
9
|
+
>ZK909.2h
|
|
10
|
+
atgggaaatgcggcatctggcggatcttctggaggtgggggatcggcacgacgtggaaacggtggcggaaacaacggtagtgactataacaatgcgatggttttctcgaatggacgtttagccgcggcagagacaatcaaagaattcctggacaaggcacgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgactttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcataagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactcaagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgtttttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattcatctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccactcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctcatctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatcaccgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacaccagaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgggcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcagccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcgaatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggtaacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactggattgccatctatcagaagaagatcgaagcaccgttccttccaaaatgccgtggccctggcgacgcatctaactttgacgactacgaggaagagccgcttcgtatctcgggcaccgagaaatgcgccaaagagtttgccgagttttaa
|
|
11
|
+
>ZK909.2b
|
|
12
|
+
atgctcaagtttctgaaaccaaaatcgtcggacgagggaagctcgaaggacaacaagaactcggcgtcgctcaaagaattcctggacaaggcacgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgactttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcataagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactcaagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgtttttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattcatctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccactcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctcatctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatcaccgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacaccagaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgggcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcagccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcgaatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggtaacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactggattgccatctatcagaagaagatcacaccgccctcgttctccaaaggagaatccaatggtcgactgttcgaggctctgtatccacgtgtcgatggtcccgccgacacacgtcattttgtggaagaggtgcaagagccgactgagtttgtgatcgccgcgactccacagttggaagagctgttcgtcgagttttag
|
|
13
|
+
>ZK909.2f
|
|
14
|
+
atgctgtcctcgtcgtttttccgcggcagtatgaaagaacggaagaatgaggcgttgaagaatcacaaaagtaaatacatatcaggaggttatttagaaactgtcaaagaattcctggacaaggcacgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgactttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcataagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactcaagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgtttttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattcatctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccactcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctcatctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatcaccgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacaccagaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgggcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcagccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcgaatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggtaacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactggattgccatctatcagaagaagatcgaagcaccgttccttccaaaatgccgtggccctggcgacgcatctaactttgacgactacgaggaagagccgcttcgtatctcgggcaccgagaaatgcgccaaagagtttgccgagttttaa
|
|
15
|
+
>ZK909.2d
|
|
16
|
+
atgtcgtccagtagcaataaaaaagtgcaagtcaagtttttcaaagaattcctggacaaggcacgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgactttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcataagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactcaagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgtttttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattcatctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccactcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctcatctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatcaccgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacaccagaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgggcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcagccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcgaatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggtaacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactggattgccatctatcagaagaagatcacaccgccctcgttctccaaaggagaatccaatggtcgactgttcgaggctctgtatccacgtgtcgatggtcccgccgacacacgtcattttgtggaagaggtgcaagagccgactgagtttgtgatcgccgcgactccacagttggaagagctgttcgtcgagttttag
|
|
17
|
+
>ZK909.2a
|
|
18
|
+
atgctcaagtttctgaaaccaaaatcgtcggacgagggaagctcgaaggacaacaagaactcggcgtcgctcaaagaattcctggacaaggcacgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgactttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcataagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactcaagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgtttttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattcatctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccactcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctcatctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatcaccgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacaccagaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgggcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcagccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcgaatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggtaacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactggattgccatctatcagaagaagatcgaagcaccgttccttccaaaatgccgtggccctggcgacgcatctaactttgacgactacgaggaagagccgcttcgtatctcgggcaccgagaaatgcgccaaagagtttgccgagttttaa
|
|
19
|
+
>ZK909.2i
|
|
20
|
+
atgggatccatggtgttcattgtcaaagaattcctggacaaggcacgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgactttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcataagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactcaagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgtttttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattcatctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccactcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctcatctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatcaccgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacaccagaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgggcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcagccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcgaatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggtaacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactggattgccatctatcagaagaagatcacaccgccctcgttctccaaaggagaatccaatggtcgactgttcgaggctctgtatccacgtgtcgatggtcccgccgacacacgtcattttgtggaagaggtgcaagagccgactgagtttgtgatcgccgcgactccacagttggaagagctgttcgtcgagttttag
|
|
21
|
+
>ZK909.2m
|
|
22
|
+
atgtcgtccagtagcaataaaaaagtgcaagtcaagtttttcaaagaattcctggacaaggcacgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgactttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcataagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactcaagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgtttttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattcatctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccactcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctcatctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatcaccgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacaccagaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgggcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcagccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcgaatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggtaacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactggattgccatctatcagaagaagatcgaagcaccgttccttccaaaatgccgtggccctggcgacgcatctaactttgacgactacgaggaagagccgcttcgtatctcgggcaccgagaaatgcgccaaagagtttgccgagttttaa
|
|
23
|
+
>ZK909.2g
|
|
24
|
+
atgggatccatggtgttcattgtcaaagaattcctggacaaggcacgcgaagacttcaaacaacgatgggagaatccggctcagaacacggcgtgtcttgacgactttgataggataaaaacccttggaaccggatcattcgggcgcgtgatgcttgtgaagcataagcagtcgggcaactattatgccatgaaaattctagacaaacaaaaggttgtaaaactcaagcaagtggagcacacgttgaacgaaaagcgcattctccaggctatcgattttccgtttttggtgaacatgacgttctctttcaaggacaactccaacttgtacatggtgctcgaattcatctcgggaggtgagatgttctcacatttacgccgaatcggacgtttctccgagccccactcgcgtttctacgccgctcaaattgtgcttgcctttgagtaccttcactccttagatctcatctatcgtgatctgaaacccgagaacttgcttatcgattccactggatatctaaagatcaccgatttcggatttgcgaaacgtgtcaaaggacgaacgtggacattgtgcggcacaccagaatacttggcacccgagattattttgtcaaaaggatacaataaggctgtcgattggtgggcacttggtgtgttgatctacgaaatggccgccggttatccgccgttctttgccgatcagccgattcaaatttatgagaagattgtgtcaggaaaagtgaaattcccgtcgcacttctcgaatgagttgaaagacttgctgaagaatttgctccaagttgatcttacaaagcgatacggtaacctgaaaaatggagttgccgatatcaaaaatcacaagtggtttggaagtaccgactggattgccatctatcagaagaagatcgaagcaccgttccttccaaaatgccgtggccctggcgacgcatctaactttgacgactacgaggaagagccgcttcgtatctcgggcaccgagaaatgcgccaaagagtttgccgagttttaa
|