bel_parser 1.0.0.alpha.24 → 1.0.0.alpha.25

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (7) hide show
  1. checksums.yaml +4 -4
  2. data/VERSION +1 -1
  3. data/lib/bel/translator/plugins/bel_script/bel_citation_serialization.rb +5 -5
  4. data/lib/bel/translator/plugins/bel_script/bel_discrete_serialization.rb +5 -5
  5. data/lib/bel/translator/plugins/bel_script/bel_top_down_serialization.rb +5 -5
  6. data/lib/bel/translator/plugins/bel_script/nanopub_serialization.rb +4 -4
  7. metadata +1 -1
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
1
1
  ---
2
2
  SHA1:
3
- metadata.gz: 617ddc578c6940935e8fb9a51b6a3c208df4bae8
4
- data.tar.gz: c9a72673b33b655c94d89794f0447550d22fea39
3
+ metadata.gz: 34152c1783a2172b735ca8b24fefe15e9c54acdb
4
+ data.tar.gz: 38dda7b229288ed5b773d10de465403460aa51cd
5
5
  SHA512:
6
- metadata.gz: 922ef32d7cbdc44f4199e2fba5e8b3709a09702781b60d18716bb94775ff33f3c4c691cb30b31950ad3fbcc7554fc09afcf0543145a3e7c22e981100c976da8f
7
- data.tar.gz: 0ce2bbb50b3f1d58a0a2afe2c7d76c02b9b87acd5483bf0532955c7408cf937aa12b48111fba0120d543a062668a382cc94a8f089800a8a3232db384d6740fa1
6
+ metadata.gz: 0c17ce508194ae5377a20996878f73bae578581602b778ce856be0a1c6d33c1fa88c7b7c7a4791c8fda3f21066b9ce760865f1620a2afc569b8efbc2a762f2e3
7
+ data.tar.gz: 1c9d09cae82f9013a03b791262afd9c3ed658615c575a3030e52cf81b31ec52b0026e366307f29dee49267ee1307975b08dec352b57a2f810ba67f1cc60c38d4
data/VERSION CHANGED
@@ -1 +1 @@
1
- 1.0.0.alpha.24
1
+ 1.0.0.alpha.25
data/lib/bel/translator/plugins/bel_script/bel_citation_serialization.rb CHANGED
@@ -35,12 +35,12 @@ module BEL::Translator::Plugins::BelScript::BelCitationSerialization
35
35
  bel = ''
36
36
 
37
37
  citation = citation_value(nanopub)
38
- summary_text = summary_text_value(nanopub)
38
+ support = support_value(nanopub)
39
39
  annotations = annotation_values(nanopub)
40
40
 
41
41
  current_annotations = {}.merge(annotations)
42
42
  current_annotations[:Citation] = citation if citation
43
- current_annotations[:Support] = summary_text if summary_text
43
+ current_annotations[:Support] = support if support
44
44
 
45
45
  if !nanopub.citation.id || nanopub.citation.id.empty?
46
46
  citation_id = quote('')
@@ -85,9 +85,9 @@ module BEL::Translator::Plugins::BelScript::BelCitationSerialization
85
85
  end
86
86
 
87
87
  # SET Support
88
- summary_text = current_annotations.delete(:Support)
89
- if summary_text
90
- bel << %Q{SET Support = "#{summary_text}"\n}
88
+ support = current_annotations.delete(:Support)
89
+ if support
90
+ bel << %Q{SET Support = "#{support}"\n}
91
91
  end
92
92
 
93
93
  # SET new or modified annotations
data/lib/bel/translator/plugins/bel_script/bel_discrete_serialization.rb CHANGED
@@ -50,12 +50,12 @@ module BEL::Translator::Plugins::BelScript::BelDiscreteSerialization
50
50
  bel = ''
51
51
 
52
52
  citation = citation_value(nanopub)
53
- summary_text = summary_text_value(nanopub)
53
+ support = support_value(nanopub)
54
54
  annotations = annotation_values(nanopub)
55
55
 
56
56
  current_annotations = {}.merge(annotations)
57
57
  current_annotations[:Citation] = citation if citation
58
- current_annotations[:Support] = summary_text if summary_text
58
+ current_annotations[:Support] = support if support
59
59
 
60
60
  # UNSET unused annotations from previous nanopub.
61
61
  (cumulative_annotations.keys - current_annotations.keys).each do |unset_key|
@@ -73,9 +73,9 @@ module BEL::Translator::Plugins::BelScript::BelDiscreteSerialization
73
73
  end
74
74
 
75
75
  # SET Support
76
- summary_text = current_annotations.delete(:Support)
77
- if summary_text
78
- bel << %Q{SET Support = "#{summary_text}"\n}
76
+ support = current_annotations.delete(:Support)
77
+ if support
78
+ bel << %Q{SET Support = "#{support}"\n}
79
79
  end
80
80
 
81
81
  # SET new or modified annotations
data/lib/bel/translator/plugins/bel_script/bel_top_down_serialization.rb CHANGED
@@ -34,12 +34,12 @@ module BEL::Translator::Plugins::BelScript::BelTopDownSerialization
34
34
  bel = ''
35
35
 
36
36
  citation = citation_value(nanopub)
37
- summary_text = summary_text_value(nanopub)
37
+ support = support_value(nanopub)
38
38
  annotations = annotation_values(nanopub)
39
39
 
40
40
  current_annotations = {}.merge(annotations)
41
41
  current_annotations[:Citation] = citation if citation
42
- current_annotations[:Support] = summary_text if summary_text
42
+ current_annotations[:Support] = support if support
43
43
 
44
44
  # UNSET unused annotations from previous nanopub.
45
45
  (cumulative_annotations.keys - current_annotations.keys).each do |unset_key|
@@ -64,9 +64,9 @@ module BEL::Translator::Plugins::BelScript::BelTopDownSerialization
64
64
  end
65
65
 
66
66
  # SET Support
67
- summary_text = current_annotations.delete(:Support)
68
- if summary_text
69
- bel << %Q{SET Support = "#{summary_text}"\n}
67
+ support = current_annotations.delete(:Support)
68
+ if support
69
+ bel << %Q{SET Support = "#{support}"\n}
70
70
  end
71
71
 
72
72
  # SET new or modified annotations
data/lib/bel/translator/plugins/bel_script/nanopub_serialization.rb CHANGED
@@ -42,12 +42,12 @@ module BEL::Translator::Plugins::BelScript::NanopubSerialization
42
42
  values.join(', ')
43
43
  end
44
44
 
45
- def summary_text_value(nanopub)
46
- summary_text = nanopub.summary_text
45
+ def support_value(nanopub)
46
+ support = nanopub.support
47
47
 
48
- return nil unless summary_text && summary_text.value
48
+ return nil unless support && support.value
49
49
 
50
- value = summary_text.value
50
+ value = support.value
51
51
  value.gsub!("\n", "")
52
52
  value.gsub!('"', %Q{\\"})
53
53
  value
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: bel_parser
3
3
  version: !ruby/object:Gem::Version
4
- version: 1.0.0.alpha.24
4
+ version: 1.0.0.alpha.25
5
5
  platform: ruby
6
6
  authors:
7
7
  - Anthony Bargnesi