bel_parser 1.0.0.alpha.24 → 1.0.0.alpha.25

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Files changed (7) hide show
  1. checksums.yaml +4 -4
  2. data/VERSION +1 -1
  3. data/lib/bel/translator/plugins/bel_script/bel_citation_serialization.rb +5 -5
  4. data/lib/bel/translator/plugins/bel_script/bel_discrete_serialization.rb +5 -5
  5. data/lib/bel/translator/plugins/bel_script/bel_top_down_serialization.rb +5 -5
  6. data/lib/bel/translator/plugins/bel_script/nanopub_serialization.rb +4 -4
  7. metadata +1 -1
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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  SHA1:
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- metadata.gz: 617ddc578c6940935e8fb9a51b6a3c208df4bae8
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- data.tar.gz: c9a72673b33b655c94d89794f0447550d22fea39
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+ metadata.gz: 34152c1783a2172b735ca8b24fefe15e9c54acdb
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+ data.tar.gz: 38dda7b229288ed5b773d10de465403460aa51cd
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  SHA512:
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- metadata.gz: 922ef32d7cbdc44f4199e2fba5e8b3709a09702781b60d18716bb94775ff33f3c4c691cb30b31950ad3fbcc7554fc09afcf0543145a3e7c22e981100c976da8f
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- data.tar.gz: 0ce2bbb50b3f1d58a0a2afe2c7d76c02b9b87acd5483bf0532955c7408cf937aa12b48111fba0120d543a062668a382cc94a8f089800a8a3232db384d6740fa1
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+ metadata.gz: 0c17ce508194ae5377a20996878f73bae578581602b778ce856be0a1c6d33c1fa88c7b7c7a4791c8fda3f21066b9ce760865f1620a2afc569b8efbc2a762f2e3
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+ data.tar.gz: 1c9d09cae82f9013a03b791262afd9c3ed658615c575a3030e52cf81b31ec52b0026e366307f29dee49267ee1307975b08dec352b57a2f810ba67f1cc60c38d4
data/VERSION CHANGED
@@ -1 +1 @@
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- 1.0.0.alpha.24
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+ 1.0.0.alpha.25
data/lib/bel/translator/plugins/bel_script/bel_citation_serialization.rb CHANGED
@@ -35,12 +35,12 @@ module BEL::Translator::Plugins::BelScript::BelCitationSerialization
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  bel = ''
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  citation = citation_value(nanopub)
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- summary_text = summary_text_value(nanopub)
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+ support = support_value(nanopub)
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  annotations = annotation_values(nanopub)
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  current_annotations = {}.merge(annotations)
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  current_annotations[:Citation] = citation if citation
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- current_annotations[:Support] = summary_text if summary_text
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+ current_annotations[:Support] = support if support
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  if !nanopub.citation.id || nanopub.citation.id.empty?
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  citation_id = quote('')
@@ -85,9 +85,9 @@ module BEL::Translator::Plugins::BelScript::BelCitationSerialization
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  end
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  # SET Support
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- summary_text = current_annotations.delete(:Support)
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- if summary_text
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- bel << %Q{SET Support = "#{summary_text}"\n}
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+ support = current_annotations.delete(:Support)
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+ if support
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+ bel << %Q{SET Support = "#{support}"\n}
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  end
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  # SET new or modified annotations
data/lib/bel/translator/plugins/bel_script/bel_discrete_serialization.rb CHANGED
@@ -50,12 +50,12 @@ module BEL::Translator::Plugins::BelScript::BelDiscreteSerialization
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  bel = ''
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  citation = citation_value(nanopub)
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- summary_text = summary_text_value(nanopub)
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+ support = support_value(nanopub)
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  annotations = annotation_values(nanopub)
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  current_annotations = {}.merge(annotations)
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  current_annotations[:Citation] = citation if citation
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- current_annotations[:Support] = summary_text if summary_text
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+ current_annotations[:Support] = support if support
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  # UNSET unused annotations from previous nanopub.
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  (cumulative_annotations.keys - current_annotations.keys).each do |unset_key|
@@ -73,9 +73,9 @@ module BEL::Translator::Plugins::BelScript::BelDiscreteSerialization
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  end
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  # SET Support
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- summary_text = current_annotations.delete(:Support)
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- if summary_text
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- bel << %Q{SET Support = "#{summary_text}"\n}
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+ support = current_annotations.delete(:Support)
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+ if support
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+ bel << %Q{SET Support = "#{support}"\n}
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  end
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  # SET new or modified annotations
data/lib/bel/translator/plugins/bel_script/bel_top_down_serialization.rb CHANGED
@@ -34,12 +34,12 @@ module BEL::Translator::Plugins::BelScript::BelTopDownSerialization
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  bel = ''
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  citation = citation_value(nanopub)
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- summary_text = summary_text_value(nanopub)
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+ support = support_value(nanopub)
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  annotations = annotation_values(nanopub)
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  current_annotations = {}.merge(annotations)
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  current_annotations[:Citation] = citation if citation
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- current_annotations[:Support] = summary_text if summary_text
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+ current_annotations[:Support] = support if support
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  # UNSET unused annotations from previous nanopub.
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  (cumulative_annotations.keys - current_annotations.keys).each do |unset_key|
@@ -64,9 +64,9 @@ module BEL::Translator::Plugins::BelScript::BelTopDownSerialization
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  end
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  # SET Support
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- summary_text = current_annotations.delete(:Support)
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- if summary_text
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- bel << %Q{SET Support = "#{summary_text}"\n}
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+ support = current_annotations.delete(:Support)
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+ if support
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+ bel << %Q{SET Support = "#{support}"\n}
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  end
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  # SET new or modified annotations
data/lib/bel/translator/plugins/bel_script/nanopub_serialization.rb CHANGED
@@ -42,12 +42,12 @@ module BEL::Translator::Plugins::BelScript::NanopubSerialization
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  values.join(', ')
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  end
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- def summary_text_value(nanopub)
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- summary_text = nanopub.summary_text
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+ def support_value(nanopub)
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+ support = nanopub.support
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- return nil unless summary_text && summary_text.value
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+ return nil unless support && support.value
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- value = summary_text.value
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+ value = support.value
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  value.gsub!("\n", "")
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  value.gsub!('"', %Q{\\"})
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  value
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: bel_parser
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  version: !ruby/object:Gem::Version
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- version: 1.0.0.alpha.24
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+ version: 1.0.0.alpha.25
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  platform: ruby
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  authors:
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  - Anthony Bargnesi