bel_parser 1.0.0.alpha.27-java
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- checksums.yaml +7 -0
- data/.gemspec-java +32 -0
- data/CHANGELOG.md +10 -0
- data/LICENSE +191 -0
- data/README.md +20 -0
- data/VERSION +1 -0
- data/bin/bel2_validator +62 -0
- data/bin/bel_script_reader +132 -0
- data/lib/bel/translator/plugins/bel_script.rb +38 -0
- data/lib/bel/translator/plugins/bel_script/bel_citation_serialization.rb +125 -0
- data/lib/bel/translator/plugins/bel_script/bel_discrete_serialization.rb +109 -0
- data/lib/bel/translator/plugins/bel_script/bel_top_down_serialization.rb +100 -0
- data/lib/bel/translator/plugins/bel_script/nanopub_serialization.rb +79 -0
- data/lib/bel/translator/plugins/bel_script/reader.rb +39 -0
- data/lib/bel/translator/plugins/bel_script/translator.rb +37 -0
- data/lib/bel/translator/plugins/bel_script/writer.rb +180 -0
- data/lib/bel_parser.rb +23 -0
- data/lib/bel_parser/ast_filter.rb +44 -0
- data/lib/bel_parser/ast_generator.rb +83 -0
- data/lib/bel_parser/expression.rb +3 -0
- data/lib/bel_parser/expression/filter.rb +31 -0
- data/lib/bel_parser/expression/parser.rb +72 -0
- data/lib/bel_parser/expression/validator.rb +79 -0
- data/lib/bel_parser/language.rb +114 -0
- data/lib/bel_parser/language/amino_acid.rb +68 -0
- data/lib/bel_parser/language/apply_namespace_encoding.rb +98 -0
- data/lib/bel_parser/language/base_specification.rb +82 -0
- data/lib/bel_parser/language/covalent_protein_modification.rb +56 -0
- data/lib/bel_parser/language/expression_validator.rb +68 -0
- data/lib/bel_parser/language/function.rb +67 -0
- data/lib/bel_parser/language/relationship.rb +102 -0
- data/lib/bel_parser/language/semantics.rb +40 -0
- data/lib/bel_parser/language/semantics/deeply_nested_statement.rb +65 -0
- data/lib/bel_parser/language/semantics/function_deprecation.rb +43 -0
- data/lib/bel_parser/language/semantics/list_function_subject.rb +45 -0
- data/lib/bel_parser/language/semantics/multiple_subject_object.rb +55 -0
- data/lib/bel_parser/language/semantics/non_causal_nested_statement.rb +50 -0
- data/lib/bel_parser/language/semantics/non_object_list.rb +56 -0
- data/lib/bel_parser/language/semantics/relationship_deprecation.rb +44 -0
- data/lib/bel_parser/language/semantics/relationship_not_listable.rb +60 -0
- data/lib/bel_parser/language/semantics/signature_mapping.rb +83 -0
- data/lib/bel_parser/language/semantics_ast.rb +784 -0
- data/lib/bel_parser/language/semantics_ast_warnings.rb +180 -0
- data/lib/bel_parser/language/semantics_function.rb +16 -0
- data/lib/bel_parser/language/semantics_match.rb +28 -0
- data/lib/bel_parser/language/semantics_result.rb +33 -0
- data/lib/bel_parser/language/semantics_type_warning.rb +22 -0
- data/lib/bel_parser/language/semantics_warning.rb +27 -0
- data/lib/bel_parser/language/signature.rb +39 -0
- data/lib/bel_parser/language/specification.rb +118 -0
- data/lib/bel_parser/language/syntax.rb +38 -0
- data/lib/bel_parser/language/syntax/invalid_function.rb +39 -0
- data/lib/bel_parser/language/syntax/invalid_relationship.rb +42 -0
- data/lib/bel_parser/language/syntax/undefined_namespace.rb +49 -0
- data/lib/bel_parser/language/syntax/undefined_namespace_value.rb +44 -0
- data/lib/bel_parser/language/syntax_error.rb +32 -0
- data/lib/bel_parser/language/syntax_function.rb +16 -0
- data/lib/bel_parser/language/syntax_result.rb +32 -0
- data/lib/bel_parser/language/syntax_warning.rb +27 -0
- data/lib/bel_parser/language/version1_0.rb +20 -0
- data/lib/bel_parser/language/version1_0/functions/abundance.rb +83 -0
- data/lib/bel_parser/language/version1_0/functions/biological_process.rb +83 -0
- data/lib/bel_parser/language/version1_0/functions/catalytic_activity.rb +114 -0
- data/lib/bel_parser/language/version1_0/functions/cell_secretion.rb +83 -0
- data/lib/bel_parser/language/version1_0/functions/cell_surface_expression.rb +83 -0
- data/lib/bel_parser/language/version1_0/functions/chaperone_activity.rb +114 -0
- data/lib/bel_parser/language/version1_0/functions/complex_abundance.rb +115 -0
- data/lib/bel_parser/language/version1_0/functions/composite_abundance.rb +81 -0
- data/lib/bel_parser/language/version1_0/functions/degradation.rb +83 -0
- data/lib/bel_parser/language/version1_0/functions/fusion.rb +287 -0
- data/lib/bel_parser/language/version1_0/functions/gene_abundance.rb +122 -0
- data/lib/bel_parser/language/version1_0/functions/gtp_bound_activity.rb +113 -0
- data/lib/bel_parser/language/version1_0/functions/kinase_activity.rb +114 -0
- data/lib/bel_parser/language/version1_0/functions/list.rb +114 -0
- data/lib/bel_parser/language/version1_0/functions/micro_rna_abundance.rb +85 -0
- data/lib/bel_parser/language/version1_0/functions/molecular_activity.rb +82 -0
- data/lib/bel_parser/language/version1_0/functions/pathology.rb +83 -0
- data/lib/bel_parser/language/version1_0/functions/peptidase_activity.rb +112 -0
- data/lib/bel_parser/language/version1_0/functions/phosphatase_activity.rb +112 -0
- data/lib/bel_parser/language/version1_0/functions/products.rb +79 -0
- data/lib/bel_parser/language/version1_0/functions/protein_abundance.rb +234 -0
- data/lib/bel_parser/language/version1_0/functions/protein_modification.rb +179 -0
- data/lib/bel_parser/language/version1_0/functions/reactants.rb +79 -0
- data/lib/bel_parser/language/version1_0/functions/reaction.rb +86 -0
- data/lib/bel_parser/language/version1_0/functions/ribosylation_activity.rb +114 -0
- data/lib/bel_parser/language/version1_0/functions/rna_abundance.rb +122 -0
- data/lib/bel_parser/language/version1_0/functions/substitution.rb +93 -0
- data/lib/bel_parser/language/version1_0/functions/transcriptional_activity.rb +114 -0
- data/lib/bel_parser/language/version1_0/functions/translocation.rb +98 -0
- data/lib/bel_parser/language/version1_0/functions/transport_activity.rb +115 -0
- data/lib/bel_parser/language/version1_0/functions/truncation.rb +81 -0
- data/lib/bel_parser/language/version1_0/relationships/acts_in.rb +61 -0
- data/lib/bel_parser/language/version1_0/relationships/analogous.rb +41 -0
- data/lib/bel_parser/language/version1_0/relationships/association.rb +42 -0
- data/lib/bel_parser/language/version1_0/relationships/biomarker_for.rb +42 -0
- data/lib/bel_parser/language/version1_0/relationships/causes_no_change.rb +50 -0
- data/lib/bel_parser/language/version1_0/relationships/decreases.rb +63 -0
- data/lib/bel_parser/language/version1_0/relationships/directly_decreases.rb +56 -0
- data/lib/bel_parser/language/version1_0/relationships/directly_increases.rb +56 -0
- data/lib/bel_parser/language/version1_0/relationships/has_component.rb +62 -0
- data/lib/bel_parser/language/version1_0/relationships/has_components.rb +61 -0
- data/lib/bel_parser/language/version1_0/relationships/has_member.rb +48 -0
- data/lib/bel_parser/language/version1_0/relationships/has_members.rb +57 -0
- data/lib/bel_parser/language/version1_0/relationships/has_modification.rb +54 -0
- data/lib/bel_parser/language/version1_0/relationships/has_product.rb +60 -0
- data/lib/bel_parser/language/version1_0/relationships/has_variant.rb +54 -0
- data/lib/bel_parser/language/version1_0/relationships/includes.rb +59 -0
- data/lib/bel_parser/language/version1_0/relationships/increases.rb +63 -0
- data/lib/bel_parser/language/version1_0/relationships/is_a.rb +48 -0
- data/lib/bel_parser/language/version1_0/relationships/negative_correlation.rb +50 -0
- data/lib/bel_parser/language/version1_0/relationships/orthologous.rb +48 -0
- data/lib/bel_parser/language/version1_0/relationships/positive_correlation.rb +46 -0
- data/lib/bel_parser/language/version1_0/relationships/prognostic_biomarker_for.rb +44 -0
- data/lib/bel_parser/language/version1_0/relationships/rate_limiting_step_of.rb +53 -0
- data/lib/bel_parser/language/version1_0/relationships/reactant_in.rb +60 -0
- data/lib/bel_parser/language/version1_0/relationships/sub_process_of.rb +55 -0
- data/lib/bel_parser/language/version1_0/relationships/transcribed_to.rb +53 -0
- data/lib/bel_parser/language/version1_0/relationships/translated_to.rb +54 -0
- data/lib/bel_parser/language/version1_0/relationships/translocates.rb +57 -0
- data/lib/bel_parser/language/version1_0/return_types/abundance.rb +20 -0
- data/lib/bel_parser/language/version1_0/return_types/any.rb +74 -0
- data/lib/bel_parser/language/version1_0/return_types/biological_process.rb +17 -0
- data/lib/bel_parser/language/version1_0/return_types/catalytic_activity.rb +20 -0
- data/lib/bel_parser/language/version1_0/return_types/chaperone_activity.rb +20 -0
- data/lib/bel_parser/language/version1_0/return_types/complex_abundance.rb +17 -0
- data/lib/bel_parser/language/version1_0/return_types/fusion.rb +17 -0
- data/lib/bel_parser/language/version1_0/return_types/gene_abundance.rb +17 -0
- data/lib/bel_parser/language/version1_0/return_types/gtp_bound_activity.rb +20 -0
- data/lib/bel_parser/language/version1_0/return_types/kinase_activity.rb +20 -0
- data/lib/bel_parser/language/version1_0/return_types/list.rb +17 -0
- data/lib/bel_parser/language/version1_0/return_types/micro_rna_abundance.rb +17 -0
- data/lib/bel_parser/language/version1_0/return_types/molecular_activity.rb +20 -0
- data/lib/bel_parser/language/version1_0/return_types/pathology.rb +17 -0
- data/lib/bel_parser/language/version1_0/return_types/peptidase_activity.rb +20 -0
- data/lib/bel_parser/language/version1_0/return_types/phosphatase_activity.rb +20 -0
- data/lib/bel_parser/language/version1_0/return_types/products.rb +17 -0
- data/lib/bel_parser/language/version1_0/return_types/protein_abundance.rb +17 -0
- data/lib/bel_parser/language/version1_0/return_types/protein_modification.rb +17 -0
- data/lib/bel_parser/language/version1_0/return_types/reactants.rb +17 -0
- data/lib/bel_parser/language/version1_0/return_types/ribosylation_activity.rb +20 -0
- data/lib/bel_parser/language/version1_0/return_types/rna_abundance.rb +17 -0
- data/lib/bel_parser/language/version1_0/return_types/substitution.rb +17 -0
- data/lib/bel_parser/language/version1_0/return_types/transcriptional_activity.rb +20 -0
- data/lib/bel_parser/language/version1_0/return_types/transport_activity.rb +20 -0
- data/lib/bel_parser/language/version1_0/return_types/truncation.rb +17 -0
- data/lib/bel_parser/language/version1_0/value_encodings/abundance.rb +21 -0
- data/lib/bel_parser/language/version1_0/value_encodings/any.rb +74 -0
- data/lib/bel_parser/language/version1_0/value_encodings/biological_process.rb +21 -0
- data/lib/bel_parser/language/version1_0/value_encodings/complex_abundance.rb +21 -0
- data/lib/bel_parser/language/version1_0/value_encodings/gene_abundance.rb +21 -0
- data/lib/bel_parser/language/version1_0/value_encodings/micro_rna_abundance.rb +21 -0
- data/lib/bel_parser/language/version1_0/value_encodings/pathology.rb +21 -0
- data/lib/bel_parser/language/version1_0/value_encodings/protein_abundance.rb +21 -0
- data/lib/bel_parser/language/version1_0/value_encodings/rna_abundance.rb +21 -0
- data/lib/bel_parser/language/version2_0.rb +20 -0
- data/lib/bel_parser/language/version2_0/functions/abundance.rb +161 -0
- data/lib/bel_parser/language/version2_0/functions/activity.rb +118 -0
- data/lib/bel_parser/language/version2_0/functions/biological_process.rb +84 -0
- data/lib/bel_parser/language/version2_0/functions/cell_secretion.rb +83 -0
- data/lib/bel_parser/language/version2_0/functions/cell_surface_expression.rb +83 -0
- data/lib/bel_parser/language/version2_0/functions/complex_abundance.rb +190 -0
- data/lib/bel_parser/language/version2_0/functions/composite_abundance.rb +81 -0
- data/lib/bel_parser/language/version2_0/functions/degradation.rb +83 -0
- data/lib/bel_parser/language/version2_0/functions/fragment.rb +116 -0
- data/lib/bel_parser/language/version2_0/functions/from_location.rb +85 -0
- data/lib/bel_parser/language/version2_0/functions/fusion.rb +203 -0
- data/lib/bel_parser/language/version2_0/functions/gene_abundance.rb +192 -0
- data/lib/bel_parser/language/version2_0/functions/list.rb +114 -0
- data/lib/bel_parser/language/version2_0/functions/location.rb +83 -0
- data/lib/bel_parser/language/version2_0/functions/micro_rna_abundance.rb +163 -0
- data/lib/bel_parser/language/version2_0/functions/molecular_activity.rb +86 -0
- data/lib/bel_parser/language/version2_0/functions/pathology.rb +83 -0
- data/lib/bel_parser/language/version2_0/functions/products.rb +79 -0
- data/lib/bel_parser/language/version2_0/functions/protein_abundance.rb +270 -0
- data/lib/bel_parser/language/version2_0/functions/protein_modification.rb +172 -0
- data/lib/bel_parser/language/version2_0/functions/reactants.rb +79 -0
- data/lib/bel_parser/language/version2_0/functions/reaction.rb +86 -0
- data/lib/bel_parser/language/version2_0/functions/rna_abundance.rb +192 -0
- data/lib/bel_parser/language/version2_0/functions/to_location.rb +84 -0
- data/lib/bel_parser/language/version2_0/functions/translocation.rb +91 -0
- data/lib/bel_parser/language/version2_0/functions/variant.rb +80 -0
- data/lib/bel_parser/language/version2_0/relationships/acts_in.rb +61 -0
- data/lib/bel_parser/language/version2_0/relationships/analogous.rb +45 -0
- data/lib/bel_parser/language/version2_0/relationships/association.rb +42 -0
- data/lib/bel_parser/language/version2_0/relationships/biomarker_for.rb +46 -0
- data/lib/bel_parser/language/version2_0/relationships/causes_no_change.rb +50 -0
- data/lib/bel_parser/language/version2_0/relationships/decreases.rb +63 -0
- data/lib/bel_parser/language/version2_0/relationships/directly_decreases.rb +56 -0
- data/lib/bel_parser/language/version2_0/relationships/directly_increases.rb +56 -0
- data/lib/bel_parser/language/version2_0/relationships/has_component.rb +62 -0
- data/lib/bel_parser/language/version2_0/relationships/has_components.rb +61 -0
- data/lib/bel_parser/language/version2_0/relationships/has_member.rb +48 -0
- data/lib/bel_parser/language/version2_0/relationships/has_members.rb +57 -0
- data/lib/bel_parser/language/version2_0/relationships/has_modification.rb +54 -0
- data/lib/bel_parser/language/version2_0/relationships/has_product.rb +60 -0
- data/lib/bel_parser/language/version2_0/relationships/has_variant.rb +54 -0
- data/lib/bel_parser/language/version2_0/relationships/includes.rb +59 -0
- data/lib/bel_parser/language/version2_0/relationships/increases.rb +63 -0
- data/lib/bel_parser/language/version2_0/relationships/is_a.rb +48 -0
- data/lib/bel_parser/language/version2_0/relationships/negative_correlation.rb +50 -0
- data/lib/bel_parser/language/version2_0/relationships/orthologous.rb +48 -0
- data/lib/bel_parser/language/version2_0/relationships/positive_correlation.rb +46 -0
- data/lib/bel_parser/language/version2_0/relationships/prognostic_biomarker_for.rb +48 -0
- data/lib/bel_parser/language/version2_0/relationships/rate_limiting_step_of.rb +53 -0
- data/lib/bel_parser/language/version2_0/relationships/reactant_in.rb +60 -0
- data/lib/bel_parser/language/version2_0/relationships/regulates.rb +51 -0
- data/lib/bel_parser/language/version2_0/relationships/sub_process_of.rb +55 -0
- data/lib/bel_parser/language/version2_0/relationships/transcribed_to.rb +53 -0
- data/lib/bel_parser/language/version2_0/relationships/translated_to.rb +54 -0
- data/lib/bel_parser/language/version2_0/relationships/translocates.rb +57 -0
- data/lib/bel_parser/language/version2_0/return_types/abundance.rb +20 -0
- data/lib/bel_parser/language/version2_0/return_types/activity.rb +20 -0
- data/lib/bel_parser/language/version2_0/return_types/any.rb +74 -0
- data/lib/bel_parser/language/version2_0/return_types/biological_process.rb +17 -0
- data/lib/bel_parser/language/version2_0/return_types/complex_abundance.rb +17 -0
- data/lib/bel_parser/language/version2_0/return_types/fragment.rb +20 -0
- data/lib/bel_parser/language/version2_0/return_types/from_location.rb +20 -0
- data/lib/bel_parser/language/version2_0/return_types/fusion.rb +17 -0
- data/lib/bel_parser/language/version2_0/return_types/gene_abundance.rb +17 -0
- data/lib/bel_parser/language/version2_0/return_types/list.rb +17 -0
- data/lib/bel_parser/language/version2_0/return_types/location.rb +20 -0
- data/lib/bel_parser/language/version2_0/return_types/micro_rna_abundance.rb +17 -0
- data/lib/bel_parser/language/version2_0/return_types/molecular_activity.rb +20 -0
- data/lib/bel_parser/language/version2_0/return_types/pathology.rb +17 -0
- data/lib/bel_parser/language/version2_0/return_types/products.rb +17 -0
- data/lib/bel_parser/language/version2_0/return_types/protein_abundance.rb +17 -0
- data/lib/bel_parser/language/version2_0/return_types/protein_modification.rb +17 -0
- data/lib/bel_parser/language/version2_0/return_types/reactants.rb +17 -0
- data/lib/bel_parser/language/version2_0/return_types/rna_abundance.rb +17 -0
- data/lib/bel_parser/language/version2_0/return_types/to_location.rb +20 -0
- data/lib/bel_parser/language/version2_0/return_types/variant.rb +20 -0
- data/lib/bel_parser/language/version2_0/value_encodings/abundance.rb +21 -0
- data/lib/bel_parser/language/version2_0/value_encodings/activity.rb +21 -0
- data/lib/bel_parser/language/version2_0/value_encodings/any.rb +74 -0
- data/lib/bel_parser/language/version2_0/value_encodings/biological_process.rb +21 -0
- data/lib/bel_parser/language/version2_0/value_encodings/complex_abundance.rb +21 -0
- data/lib/bel_parser/language/version2_0/value_encodings/gene_abundance.rb +21 -0
- data/lib/bel_parser/language/version2_0/value_encodings/location.rb +21 -0
- data/lib/bel_parser/language/version2_0/value_encodings/micro_rna_abundance.rb +21 -0
- data/lib/bel_parser/language/version2_0/value_encodings/pathology.rb +21 -0
- data/lib/bel_parser/language/version2_0/value_encodings/protein_abundance.rb +21 -0
- data/lib/bel_parser/language/version2_0/value_encodings/protein_modification.rb +21 -0
- data/lib/bel_parser/language/version2_0/value_encodings/rna_abundance.rb +21 -0
- data/lib/bel_parser/mixin/line_continuator.rb +15 -0
- data/lib/bel_parser/mixin/line_mapping.rb +14 -0
- data/lib/bel_parser/parsers/ast/node.rb +987 -0
- data/lib/bel_parser/parsers/ast/sexp.rb +8 -0
- data/lib/bel_parser/parsers/bel_script.rb +5 -0
- data/lib/bel_parser/parsers/bel_script/define_annotation.rb +5920 -0
- data/lib/bel_parser/parsers/bel_script/define_annotation.rl +141 -0
- data/lib/bel_parser/parsers/bel_script/define_namespace.rb +1780 -0
- data/lib/bel_parser/parsers/bel_script/define_namespace.rl +121 -0
- data/lib/bel_parser/parsers/bel_script/set.rb +5008 -0
- data/lib/bel_parser/parsers/bel_script/set.rl +116 -0
- data/lib/bel_parser/parsers/bel_script/set_document.rb +7722 -0
- data/lib/bel_parser/parsers/bel_script/set_document.rl +97 -0
- data/lib/bel_parser/parsers/bel_script/unset.rb +706 -0
- data/lib/bel_parser/parsers/bel_script/unset.rl +95 -0
- data/lib/bel_parser/parsers/common.rb +5 -0
- data/lib/bel_parser/parsers/common/blank_line.rb +211 -0
- data/lib/bel_parser/parsers/common/blank_line.rl +81 -0
- data/lib/bel_parser/parsers/common/comment_line.rb +245 -0
- data/lib/bel_parser/parsers/common/comment_line.rl +97 -0
- data/lib/bel_parser/parsers/common/common.rb +7 -0
- data/lib/bel_parser/parsers/common/common.rl +13 -0
- data/lib/bel_parser/parsers/common/identifier.rb +289 -0
- data/lib/bel_parser/parsers/common/identifier.rl +106 -0
- data/lib/bel_parser/parsers/common/list.rb +2388 -0
- data/lib/bel_parser/parsers/common/list.rl +146 -0
- data/lib/bel_parser/parsers/common/string.rb +271 -0
- data/lib/bel_parser/parsers/common/string.rl +107 -0
- data/lib/bel_parser/parsers/expression.rb +7 -0
- data/lib/bel_parser/parsers/expression/comment.rb +239 -0
- data/lib/bel_parser/parsers/expression/comment.rl +97 -0
- data/lib/bel_parser/parsers/expression/nested_statement.rb +17802 -0
- data/lib/bel_parser/parsers/expression/nested_statement.rl +141 -0
- data/lib/bel_parser/parsers/expression/observed_term.rb +7291 -0
- data/lib/bel_parser/parsers/expression/observed_term.rl +92 -0
- data/lib/bel_parser/parsers/expression/parameter.rb +1506 -0
- data/lib/bel_parser/parsers/expression/parameter.rl +97 -0
- data/lib/bel_parser/parsers/expression/relationship.rb +254 -0
- data/lib/bel_parser/parsers/expression/relationship.rl +98 -0
- data/lib/bel_parser/parsers/expression/simple_statement.rb +10475 -0
- data/lib/bel_parser/parsers/expression/simple_statement.rl +112 -0
- data/lib/bel_parser/parsers/expression/term.rb +3989 -0
- data/lib/bel_parser/parsers/expression/term.rl +157 -0
- data/lib/bel_parser/parsers/line_parser.rb +92 -0
- data/lib/bel_parser/parsers/mixin/buffer.rb +10 -0
- data/lib/bel_parser/parsers/nonblocking_io_wrapper.rb +50 -0
- data/lib/bel_parser/parsers/serializer.rb +205 -0
- data/lib/bel_parser/quoting.rb +177 -0
- data/lib/bel_parser/resource/concept.rb +56 -0
- data/lib/bel_parser/resource/concept_scheme.rb +35 -0
- data/lib/bel_parser/resource/dataset.rb +34 -0
- data/lib/bel_parser/resource/eager_reader.rb +89 -0
- data/lib/bel_parser/resource/eager_sparql_reader.rb +51 -0
- data/lib/bel_parser/resource/file_resource.rb +21 -0
- data/lib/bel_parser/resource/file_resource_value.rb +24 -0
- data/lib/bel_parser/resource/jena_tdb_reader.rb +246 -0
- data/lib/bel_parser/resource/lru_cache.rb +111 -0
- data/lib/bel_parser/resource/lru_reader.rb +34 -0
- data/lib/bel_parser/resource/reader.rb +18 -0
- data/lib/bel_parser/resource/resource_url_reader.rb +181 -0
- data/lib/bel_parser/resource/sparql_reader.rb +179 -0
- data/lib/bel_parser/resource/value.rb +31 -0
- data/lib/bel_parser/script.rb +8 -0
- data/lib/bel_parser/script/filter.rb +35 -0
- data/lib/bel_parser/script/first_node.rb +21 -0
- data/lib/bel_parser/script/keywords.rb +32 -0
- data/lib/bel_parser/script/nanopub_mapper.rb +182 -0
- data/lib/bel_parser/script/parser.rb +51 -0
- data/lib/bel_parser/script/state/annotation_definition.rb +62 -0
- data/lib/bel_parser/script/state/bel_version.rb +36 -0
- data/lib/bel_parser/script/state/document_property.rb +29 -0
- data/lib/bel_parser/script/state/namespace_definition.rb +32 -0
- data/lib/bel_parser/script/state/set.rb +82 -0
- data/lib/bel_parser/script/state/unset.rb +46 -0
- data/lib/bel_parser/script/state_aggregator.rb +49 -0
- data/lib/bel_parser/script/state_function.rb +10 -0
- data/lib/bel_parser/script/syntax/expression_validation.rb +46 -0
- data/lib/bel_parser/script/syntax/invalid_regex_pattern.rb +49 -0
- data/lib/bel_parser/script/syntax/undefined_annotation.rb +61 -0
- data/lib/bel_parser/script/syntax/undefined_annotation_value.rb +84 -0
- data/lib/bel_parser/script/syntax/unresolvable_namespace.rb +54 -0
- data/lib/bel_parser/script/syntax/unsupported_bel_version.rb +59 -0
- data/lib/bel_parser/script/validator.rb +65 -0
- data/lib/bel_parser/vendor/ast.rb +17 -0
- data/lib/bel_parser/vendor/ast/node.rb +254 -0
- data/lib/bel_parser/vendor/ast/processor.rb +12 -0
- data/lib/bel_parser/vendor/ast/processor/mixin.rb +282 -0
- data/lib/bel_parser/vendor/ast/sexp.rb +30 -0
- metadata +390 -0
@@ -0,0 +1,97 @@
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# begin: ragel
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=begin
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%%{
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machine bel;
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include 'set.rl';
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DOCUMENT_KW = [dD][oO][cC][uU][mM][eE][nN][tT];
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action yield_document_property {
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yield(
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document_property(
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*@buffers[:set].children))
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}
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set_document :=
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SET_KW %set_keyword
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SP+
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DOCUMENT_KW
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SP+
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IDENT %name
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SP+
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EQL
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SP+
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(
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STRING %string_value |
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LIST %list_value |
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IDENT %ident_value
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) NL @yield_document_property;
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}%%
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=end
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# end: ragel
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require_relative '../ast/node'
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require_relative '../mixin/buffer'
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require_relative '../nonblocking_io_wrapper'
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module BELParser
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module Parsers
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module BELScript
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module SetDocument
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class << self
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MAX_LENGTH = 1024 * 128 # 128K
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def parse(content)
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return nil unless content
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Parser.new(content).each do |obj|
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yield obj
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end
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end
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end
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private
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class Parser
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include Enumerable
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include BELParser::Parsers::Buffer
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include BELParser::Parsers::AST::Sexp
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def initialize(content)
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@content = content
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# begin: ragel
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%% write data;
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# end: ragel
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end
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def each
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@buffers = {}
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data = @content.unpack('C*')
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p = 0
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pe = data.length
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eof = data.length
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# begin: ragel
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%% write init;
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%% write exec;
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# end: ragel
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end
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end
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end
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end
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end
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end
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if __FILE__ == $0
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$stdin.each_line do |line|
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BELParser::Parsers::BELScript::SetDocument.parse(line) { |obj|
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puts obj.inspect
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}
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end
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end
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# vim: ft=ruby ts=2 sw=2:
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# encoding: utf-8
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@@ -0,0 +1,706 @@
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# begin: ragel
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=begin
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class << self
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attr_accessor :_bel_trans_keys
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private :_bel_trans_keys, :_bel_trans_keys=
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end
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self._bel_trans_keys = [
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0, 0, 85, 117, 78, 110,
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83, 115, 69, 101, 84,
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116, 9, 32, 9, 122,
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10, 122, 48, 122, 10, 122,
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0, 0, 0, 0, 0
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]
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class << self
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attr_accessor :_bel_key_spans
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private :_bel_key_spans, :_bel_key_spans=
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end
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self._bel_key_spans = [
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0, 33, 33, 33, 33, 33, 24, 114,
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113, 75, 113, 0, 0
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]
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class << self
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attr_accessor :_bel_index_offsets
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private :_bel_index_offsets, :_bel_index_offsets=
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end
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self._bel_index_offsets = [
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0, 0, 34, 68, 102, 136, 170, 195,
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310, 424, 500, 614, 615
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]
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class << self
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attr_accessor :_bel_indicies
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private :_bel_indicies, :_bel_indicies=
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end
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self._bel_indicies = [
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0, 1, 1, 1, 1, 1, 1, 1,
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1, 1, 1, 1, 1, 1, 1, 1,
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1, 1, 1, 1, 1, 1, 1, 1,
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1, 1, 1, 1, 1, 1, 1, 1,
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0, 1, 2, 1, 1, 1, 1, 1,
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1, 1, 1, 1, 1, 1, 1, 1,
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1, 1, 1, 1, 1, 1, 1, 1,
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1, 1, 1, 1, 1, 1, 1, 1,
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1, 1, 2, 1, 3, 1, 1, 1,
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1, 1, 1, 1, 1, 1, 1, 1,
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1, 1, 1, 1, 1, 1, 1, 1,
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1, 1, 1, 1, 1, 1, 1, 1,
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1, 1, 1, 1, 3, 1, 4, 1,
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1, 1, 1, 1, 1, 1, 1, 1,
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1, 1, 1, 1, 1, 1, 1, 1,
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1, 1, 1, 1, 1, 1, 1, 1,
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1, 1, 1, 1, 1, 1, 4, 1,
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5, 1, 1, 1, 1, 1, 1, 1,
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58
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1, 1, 1, 1, 1, 1, 1, 1,
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1, 1, 1, 1, 1, 1, 1, 1,
|
60
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1, 1, 1, 1, 1, 1, 1, 1,
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61
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5, 1, 6, 1, 1, 1, 1, 1,
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62
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1, 1, 1, 1, 1, 1, 1, 1,
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63
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1, 1, 1, 1, 1, 1, 1, 1,
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64
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1, 6, 1, 8, 7, 7, 7, 7,
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7, 7, 7, 7, 7, 7, 7, 7,
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7, 7, 7, 7, 7, 7, 7, 7,
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7, 7, 8, 7, 7, 7, 7, 7,
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68
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7, 7, 7, 7, 7, 7, 7, 7,
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69
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7, 7, 9, 9, 9, 9, 9, 9,
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9, 9, 9, 9, 7, 7, 7, 7,
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7, 7, 7, 9, 9, 9, 9, 9,
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9, 9, 9, 9, 9, 9, 9, 9,
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9, 9, 9, 9, 9, 9, 9, 9,
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9, 9, 9, 9, 9, 7, 7, 7,
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7, 9, 7, 9, 9, 9, 9, 9,
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9, 9, 9, 9, 9, 9, 9, 9,
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9, 9, 9, 9, 9, 9, 9, 9,
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9, 9, 9, 9, 9, 7, 10, 7,
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7, 7, 7, 7, 7, 7, 7, 7,
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7, 7, 7, 7, 7, 7, 7, 7,
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7, 7, 7, 7, 7, 7, 7, 7,
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7, 7, 7, 7, 7, 7, 7, 7,
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7, 7, 7, 7, 11, 11, 11, 11,
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84
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11, 11, 11, 11, 11, 11, 7, 7,
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85
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7, 7, 7, 7, 7, 11, 11, 11,
|
86
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11, 11, 11, 11, 11, 11, 11, 11,
|
87
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11, 11, 11, 11, 11, 11, 11, 11,
|
88
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11, 11, 11, 11, 11, 11, 11, 7,
|
89
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7, 7, 7, 11, 7, 11, 11, 11,
|
90
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11, 11, 11, 11, 11, 11, 11, 11,
|
91
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11, 11, 11, 11, 11, 11, 11, 11,
|
92
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11, 11, 11, 11, 11, 11, 11, 7,
|
93
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13, 13, 13, 13, 13, 13, 13, 13,
|
94
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13, 13, 12, 12, 12, 12, 12, 12,
|
95
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12, 13, 13, 13, 13, 13, 13, 13,
|
96
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+
13, 13, 13, 13, 13, 13, 13, 13,
|
97
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+
13, 13, 13, 13, 13, 13, 13, 13,
|
98
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+
13, 13, 13, 12, 12, 12, 12, 13,
|
99
|
+
12, 13, 13, 13, 13, 13, 13, 13,
|
100
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+
13, 13, 13, 13, 13, 13, 13, 13,
|
101
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+
13, 13, 13, 13, 13, 13, 13, 13,
|
102
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+
13, 13, 13, 12, 14, 12, 12, 12,
|
103
|
+
12, 12, 12, 12, 12, 12, 12, 12,
|
104
|
+
12, 12, 12, 12, 12, 12, 12, 12,
|
105
|
+
12, 12, 12, 12, 12, 12, 12, 12,
|
106
|
+
12, 12, 12, 12, 12, 12, 12, 12,
|
107
|
+
12, 12, 15, 15, 15, 15, 15, 15,
|
108
|
+
15, 15, 15, 15, 12, 12, 12, 12,
|
109
|
+
12, 12, 12, 15, 15, 15, 15, 15,
|
110
|
+
15, 15, 15, 15, 15, 15, 15, 15,
|
111
|
+
15, 15, 15, 15, 15, 15, 15, 15,
|
112
|
+
15, 15, 15, 15, 15, 12, 12, 12,
|
113
|
+
12, 15, 12, 15, 15, 15, 15, 15,
|
114
|
+
15, 15, 15, 15, 15, 15, 15, 15,
|
115
|
+
15, 15, 15, 15, 15, 15, 15, 15,
|
116
|
+
15, 15, 15, 15, 15, 12, 1, 1,
|
117
|
+
0
|
118
|
+
]
|
119
|
+
|
120
|
+
class << self
|
121
|
+
attr_accessor :_bel_trans_targs
|
122
|
+
private :_bel_trans_targs, :_bel_trans_targs=
|
123
|
+
end
|
124
|
+
self._bel_trans_targs = [
|
125
|
+
2, 0, 3, 4, 5, 6, 7, 0,
|
126
|
+
7, 8, 11, 8, 0, 10, 12, 10
|
127
|
+
]
|
128
|
+
|
129
|
+
class << self
|
130
|
+
attr_accessor :_bel_trans_actions
|
131
|
+
private :_bel_trans_actions, :_bel_trans_actions=
|
132
|
+
end
|
133
|
+
self._bel_trans_actions = [
|
134
|
+
0, 0, 0, 0, 0, 0, 1, 2,
|
135
|
+
0, 3, 4, 5, 6, 3, 7, 5
|
136
|
+
]
|
137
|
+
|
138
|
+
class << self
|
139
|
+
attr_accessor :_bel_eof_actions
|
140
|
+
private :_bel_eof_actions, :_bel_eof_actions=
|
141
|
+
end
|
142
|
+
self._bel_eof_actions = [
|
143
|
+
0, 0, 0, 0, 0, 0, 0, 2,
|
144
|
+
2, 6, 6, 0, 0
|
145
|
+
]
|
146
|
+
|
147
|
+
class << self
|
148
|
+
attr_accessor :bel_start
|
149
|
+
end
|
150
|
+
self.bel_start = 1;
|
151
|
+
class << self
|
152
|
+
attr_accessor :bel_first_final
|
153
|
+
end
|
154
|
+
self.bel_first_final = 11;
|
155
|
+
class << self
|
156
|
+
attr_accessor :bel_error
|
157
|
+
end
|
158
|
+
self.bel_error = 0;
|
159
|
+
|
160
|
+
class << self
|
161
|
+
attr_accessor :bel_en_ident
|
162
|
+
end
|
163
|
+
self.bel_en_ident = 9;
|
164
|
+
class << self
|
165
|
+
attr_accessor :bel_en_unset
|
166
|
+
end
|
167
|
+
self.bel_en_unset = 1;
|
168
|
+
|
169
|
+
|
170
|
+
begin
|
171
|
+
p ||= 0
|
172
|
+
pe ||= data.length
|
173
|
+
cs = bel_start
|
174
|
+
end
|
175
|
+
|
176
|
+
begin
|
177
|
+
testEof = false
|
178
|
+
_slen, _trans, _keys, _inds, _acts, _nacts = nil
|
179
|
+
_goto_level = 0
|
180
|
+
_resume = 10
|
181
|
+
_eof_trans = 15
|
182
|
+
_again = 20
|
183
|
+
_test_eof = 30
|
184
|
+
_out = 40
|
185
|
+
while true
|
186
|
+
if _goto_level <= 0
|
187
|
+
if p == pe
|
188
|
+
_goto_level = _test_eof
|
189
|
+
next
|
190
|
+
end
|
191
|
+
if cs == 0
|
192
|
+
_goto_level = _out
|
193
|
+
next
|
194
|
+
end
|
195
|
+
end
|
196
|
+
if _goto_level <= _resume
|
197
|
+
_keys = cs << 1
|
198
|
+
_inds = _bel_index_offsets[cs]
|
199
|
+
_slen = _bel_key_spans[cs]
|
200
|
+
_wide = data[p].ord
|
201
|
+
_trans = if ( _slen > 0 &&
|
202
|
+
_bel_trans_keys[_keys] <= _wide &&
|
203
|
+
_wide <= _bel_trans_keys[_keys + 1]
|
204
|
+
) then
|
205
|
+
_bel_indicies[ _inds + _wide - _bel_trans_keys[_keys] ]
|
206
|
+
else
|
207
|
+
_bel_indicies[ _inds + _slen ]
|
208
|
+
end
|
209
|
+
cs = _bel_trans_targs[_trans]
|
210
|
+
if _bel_trans_actions[_trans] != 0
|
211
|
+
case _bel_trans_actions[_trans]
|
212
|
+
when 5 then
|
213
|
+
begin
|
214
|
+
|
215
|
+
(@buffers[:ident] ||= []) << data[p].ord
|
216
|
+
end
|
217
|
+
when 2 then
|
218
|
+
begin
|
219
|
+
|
220
|
+
unless @buffers[:ident].is_a?(::AST::Node)
|
221
|
+
@buffers[:ident] ||= []
|
222
|
+
@buffers[:ident] = identifier(utf8_string(@buffers[:ident]).sub(/\n$/, ''))
|
223
|
+
end
|
224
|
+
end
|
225
|
+
when 1 then
|
226
|
+
begin
|
227
|
+
|
228
|
+
@buffers[:unset] = unset()
|
229
|
+
end
|
230
|
+
when 3 then
|
231
|
+
begin
|
232
|
+
|
233
|
+
@buffers[:ident] = []
|
234
|
+
end
|
235
|
+
begin
|
236
|
+
|
237
|
+
(@buffers[:ident] ||= []) << data[p].ord
|
238
|
+
end
|
239
|
+
when 7 then
|
240
|
+
begin
|
241
|
+
|
242
|
+
@buffers[:ident] = identifier(utf8_string(@buffers[:ident]))
|
243
|
+
end
|
244
|
+
begin
|
245
|
+
|
246
|
+
yield @buffers[:ident]
|
247
|
+
end
|
248
|
+
when 6 then
|
249
|
+
begin
|
250
|
+
|
251
|
+
unless @buffers[:ident].is_a?(::AST::Node)
|
252
|
+
@buffers[:ident] ||= []
|
253
|
+
@buffers[:ident] = identifier(utf8_string(@buffers[:ident]).sub(/\n$/, ''))
|
254
|
+
end
|
255
|
+
end
|
256
|
+
begin
|
257
|
+
|
258
|
+
@buffers[:ident] ||= []
|
259
|
+
yield @buffers[:ident]
|
260
|
+
end
|
261
|
+
when 4 then
|
262
|
+
begin
|
263
|
+
|
264
|
+
@buffers[:ident] = identifier(utf8_string(@buffers[:ident]))
|
265
|
+
end
|
266
|
+
begin
|
267
|
+
|
268
|
+
@buffers[:unset] = @buffers[:unset] << name(@buffers[:ident])
|
269
|
+
end
|
270
|
+
begin
|
271
|
+
|
272
|
+
yield @buffers[:unset]
|
273
|
+
end
|
274
|
+
end
|
275
|
+
end
|
276
|
+
end
|
277
|
+
if _goto_level <= _again
|
278
|
+
if cs == 0
|
279
|
+
_goto_level = _out
|
280
|
+
next
|
281
|
+
end
|
282
|
+
p += 1
|
283
|
+
if p != pe
|
284
|
+
_goto_level = _resume
|
285
|
+
next
|
286
|
+
end
|
287
|
+
end
|
288
|
+
if _goto_level <= _test_eof
|
289
|
+
if p == eof
|
290
|
+
case _bel_eof_actions[cs]
|
291
|
+
when 2 then
|
292
|
+
begin
|
293
|
+
|
294
|
+
unless @buffers[:ident].is_a?(::AST::Node)
|
295
|
+
@buffers[:ident] ||= []
|
296
|
+
@buffers[:ident] = identifier(utf8_string(@buffers[:ident]).sub(/\n$/, ''))
|
297
|
+
end
|
298
|
+
end
|
299
|
+
when 6 then
|
300
|
+
begin
|
301
|
+
|
302
|
+
unless @buffers[:ident].is_a?(::AST::Node)
|
303
|
+
@buffers[:ident] ||= []
|
304
|
+
@buffers[:ident] = identifier(utf8_string(@buffers[:ident]).sub(/\n$/, ''))
|
305
|
+
end
|
306
|
+
end
|
307
|
+
begin
|
308
|
+
|
309
|
+
@buffers[:ident] ||= []
|
310
|
+
yield @buffers[:ident]
|
311
|
+
end
|
312
|
+
end
|
313
|
+
end
|
314
|
+
|
315
|
+
end
|
316
|
+
if _goto_level <= _out
|
317
|
+
break
|
318
|
+
end
|
319
|
+
end
|
320
|
+
end
|
321
|
+
|
322
|
+
|
323
|
+
=end
|
324
|
+
# end: ragel
|
325
|
+
|
326
|
+
require_relative '../ast/node'
|
327
|
+
require_relative '../mixin/buffer'
|
328
|
+
require_relative '../nonblocking_io_wrapper'
|
329
|
+
|
330
|
+
module BELParser
|
331
|
+
module Parsers
|
332
|
+
module BELScript
|
333
|
+
module Unset
|
334
|
+
|
335
|
+
class << self
|
336
|
+
|
337
|
+
MAX_LENGTH = 1024 * 128 # 128K
|
338
|
+
|
339
|
+
def parse(content)
|
340
|
+
return nil unless content
|
341
|
+
|
342
|
+
Parser.new(content).each do |obj|
|
343
|
+
yield obj
|
344
|
+
end
|
345
|
+
end
|
346
|
+
end
|
347
|
+
|
348
|
+
private
|
349
|
+
|
350
|
+
class Parser
|
351
|
+
include Enumerable
|
352
|
+
include BELParser::Parsers::Buffer
|
353
|
+
include BELParser::Parsers::AST::Sexp
|
354
|
+
|
355
|
+
def initialize(content)
|
356
|
+
@content = content
|
357
|
+
# begin: ragel
|
358
|
+
|
359
|
+
class << self
|
360
|
+
attr_accessor :_bel_trans_keys
|
361
|
+
private :_bel_trans_keys, :_bel_trans_keys=
|
362
|
+
end
|
363
|
+
self._bel_trans_keys = [
|
364
|
+
0, 0, 85, 117, 78, 110,
|
365
|
+
83, 115, 69, 101, 84,
|
366
|
+
116, 9, 32, 9, 122,
|
367
|
+
10, 122, 48, 122, 10, 122,
|
368
|
+
0, 0, 0, 0, 0
|
369
|
+
]
|
370
|
+
|
371
|
+
class << self
|
372
|
+
attr_accessor :_bel_key_spans
|
373
|
+
private :_bel_key_spans, :_bel_key_spans=
|
374
|
+
end
|
375
|
+
self._bel_key_spans = [
|
376
|
+
0, 33, 33, 33, 33, 33, 24, 114,
|
377
|
+
113, 75, 113, 0, 0
|
378
|
+
]
|
379
|
+
|
380
|
+
class << self
|
381
|
+
attr_accessor :_bel_index_offsets
|
382
|
+
private :_bel_index_offsets, :_bel_index_offsets=
|
383
|
+
end
|
384
|
+
self._bel_index_offsets = [
|
385
|
+
0, 0, 34, 68, 102, 136, 170, 195,
|
386
|
+
310, 424, 500, 614, 615
|
387
|
+
]
|
388
|
+
|
389
|
+
class << self
|
390
|
+
attr_accessor :_bel_indicies
|
391
|
+
private :_bel_indicies, :_bel_indicies=
|
392
|
+
end
|
393
|
+
self._bel_indicies = [
|
394
|
+
0, 1, 1, 1, 1, 1, 1, 1,
|
395
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
396
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
397
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
398
|
+
0, 1, 2, 1, 1, 1, 1, 1,
|
399
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
400
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
401
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
402
|
+
1, 1, 2, 1, 3, 1, 1, 1,
|
403
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
404
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
405
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
406
|
+
1, 1, 1, 1, 3, 1, 4, 1,
|
407
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
408
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
409
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
410
|
+
1, 1, 1, 1, 1, 1, 4, 1,
|
411
|
+
5, 1, 1, 1, 1, 1, 1, 1,
|
412
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
413
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
414
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
415
|
+
5, 1, 6, 1, 1, 1, 1, 1,
|
416
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
417
|
+
1, 1, 1, 1, 1, 1, 1, 1,
|
418
|
+
1, 6, 1, 8, 7, 7, 7, 7,
|
419
|
+
7, 7, 7, 7, 7, 7, 7, 7,
|
420
|
+
7, 7, 7, 7, 7, 7, 7, 7,
|
421
|
+
7, 7, 8, 7, 7, 7, 7, 7,
|
422
|
+
7, 7, 7, 7, 7, 7, 7, 7,
|
423
|
+
7, 7, 9, 9, 9, 9, 9, 9,
|
424
|
+
9, 9, 9, 9, 7, 7, 7, 7,
|
425
|
+
7, 7, 7, 9, 9, 9, 9, 9,
|
426
|
+
9, 9, 9, 9, 9, 9, 9, 9,
|
427
|
+
9, 9, 9, 9, 9, 9, 9, 9,
|
428
|
+
9, 9, 9, 9, 9, 7, 7, 7,
|
429
|
+
7, 9, 7, 9, 9, 9, 9, 9,
|
430
|
+
9, 9, 9, 9, 9, 9, 9, 9,
|
431
|
+
9, 9, 9, 9, 9, 9, 9, 9,
|
432
|
+
9, 9, 9, 9, 9, 7, 10, 7,
|
433
|
+
7, 7, 7, 7, 7, 7, 7, 7,
|
434
|
+
7, 7, 7, 7, 7, 7, 7, 7,
|
435
|
+
7, 7, 7, 7, 7, 7, 7, 7,
|
436
|
+
7, 7, 7, 7, 7, 7, 7, 7,
|
437
|
+
7, 7, 7, 7, 11, 11, 11, 11,
|
438
|
+
11, 11, 11, 11, 11, 11, 7, 7,
|
439
|
+
7, 7, 7, 7, 7, 11, 11, 11,
|
440
|
+
11, 11, 11, 11, 11, 11, 11, 11,
|
441
|
+
11, 11, 11, 11, 11, 11, 11, 11,
|
442
|
+
11, 11, 11, 11, 11, 11, 11, 7,
|
443
|
+
7, 7, 7, 11, 7, 11, 11, 11,
|
444
|
+
11, 11, 11, 11, 11, 11, 11, 11,
|
445
|
+
11, 11, 11, 11, 11, 11, 11, 11,
|
446
|
+
11, 11, 11, 11, 11, 11, 11, 7,
|
447
|
+
13, 13, 13, 13, 13, 13, 13, 13,
|
448
|
+
13, 13, 12, 12, 12, 12, 12, 12,
|
449
|
+
12, 13, 13, 13, 13, 13, 13, 13,
|
450
|
+
13, 13, 13, 13, 13, 13, 13, 13,
|
451
|
+
13, 13, 13, 13, 13, 13, 13, 13,
|
452
|
+
13, 13, 13, 12, 12, 12, 12, 13,
|
453
|
+
12, 13, 13, 13, 13, 13, 13, 13,
|
454
|
+
13, 13, 13, 13, 13, 13, 13, 13,
|
455
|
+
13, 13, 13, 13, 13, 13, 13, 13,
|
456
|
+
13, 13, 13, 12, 14, 12, 12, 12,
|
457
|
+
12, 12, 12, 12, 12, 12, 12, 12,
|
458
|
+
12, 12, 12, 12, 12, 12, 12, 12,
|
459
|
+
12, 12, 12, 12, 12, 12, 12, 12,
|
460
|
+
12, 12, 12, 12, 12, 12, 12, 12,
|
461
|
+
12, 12, 15, 15, 15, 15, 15, 15,
|
462
|
+
15, 15, 15, 15, 12, 12, 12, 12,
|
463
|
+
12, 12, 12, 15, 15, 15, 15, 15,
|
464
|
+
15, 15, 15, 15, 15, 15, 15, 15,
|
465
|
+
15, 15, 15, 15, 15, 15, 15, 15,
|
466
|
+
15, 15, 15, 15, 15, 12, 12, 12,
|
467
|
+
12, 15, 12, 15, 15, 15, 15, 15,
|
468
|
+
15, 15, 15, 15, 15, 15, 15, 15,
|
469
|
+
15, 15, 15, 15, 15, 15, 15, 15,
|
470
|
+
15, 15, 15, 15, 15, 12, 1, 1,
|
471
|
+
0
|
472
|
+
]
|
473
|
+
|
474
|
+
class << self
|
475
|
+
attr_accessor :_bel_trans_targs
|
476
|
+
private :_bel_trans_targs, :_bel_trans_targs=
|
477
|
+
end
|
478
|
+
self._bel_trans_targs = [
|
479
|
+
2, 0, 3, 4, 5, 6, 7, 0,
|
480
|
+
7, 8, 11, 8, 0, 10, 12, 10
|
481
|
+
]
|
482
|
+
|
483
|
+
class << self
|
484
|
+
attr_accessor :_bel_trans_actions
|
485
|
+
private :_bel_trans_actions, :_bel_trans_actions=
|
486
|
+
end
|
487
|
+
self._bel_trans_actions = [
|
488
|
+
0, 0, 0, 0, 0, 0, 1, 2,
|
489
|
+
0, 3, 4, 5, 6, 3, 7, 5
|
490
|
+
]
|
491
|
+
|
492
|
+
class << self
|
493
|
+
attr_accessor :_bel_eof_actions
|
494
|
+
private :_bel_eof_actions, :_bel_eof_actions=
|
495
|
+
end
|
496
|
+
self._bel_eof_actions = [
|
497
|
+
0, 0, 0, 0, 0, 0, 0, 2,
|
498
|
+
2, 6, 6, 0, 0
|
499
|
+
]
|
500
|
+
|
501
|
+
class << self
|
502
|
+
attr_accessor :bel_start
|
503
|
+
end
|
504
|
+
self.bel_start = 1;
|
505
|
+
class << self
|
506
|
+
attr_accessor :bel_first_final
|
507
|
+
end
|
508
|
+
self.bel_first_final = 11;
|
509
|
+
class << self
|
510
|
+
attr_accessor :bel_error
|
511
|
+
end
|
512
|
+
self.bel_error = 0;
|
513
|
+
|
514
|
+
class << self
|
515
|
+
attr_accessor :bel_en_ident
|
516
|
+
end
|
517
|
+
self.bel_en_ident = 9;
|
518
|
+
class << self
|
519
|
+
attr_accessor :bel_en_unset
|
520
|
+
end
|
521
|
+
self.bel_en_unset = 1;
|
522
|
+
|
523
|
+
|
524
|
+
# end: ragel
|
525
|
+
end
|
526
|
+
|
527
|
+
def each
|
528
|
+
@buffers = {}
|
529
|
+
data = @content.unpack('C*')
|
530
|
+
p = 0
|
531
|
+
pe = data.length
|
532
|
+
eof = data.length
|
533
|
+
|
534
|
+
# begin: ragel
|
535
|
+
|
536
|
+
begin
|
537
|
+
p ||= 0
|
538
|
+
pe ||= data.length
|
539
|
+
cs = bel_start
|
540
|
+
end
|
541
|
+
|
542
|
+
|
543
|
+
begin
|
544
|
+
testEof = false
|
545
|
+
_slen, _trans, _keys, _inds, _acts, _nacts = nil
|
546
|
+
_goto_level = 0
|
547
|
+
_resume = 10
|
548
|
+
_eof_trans = 15
|
549
|
+
_again = 20
|
550
|
+
_test_eof = 30
|
551
|
+
_out = 40
|
552
|
+
while true
|
553
|
+
if _goto_level <= 0
|
554
|
+
if p == pe
|
555
|
+
_goto_level = _test_eof
|
556
|
+
next
|
557
|
+
end
|
558
|
+
if cs == 0
|
559
|
+
_goto_level = _out
|
560
|
+
next
|
561
|
+
end
|
562
|
+
end
|
563
|
+
if _goto_level <= _resume
|
564
|
+
_keys = cs << 1
|
565
|
+
_inds = _bel_index_offsets[cs]
|
566
|
+
_slen = _bel_key_spans[cs]
|
567
|
+
_wide = data[p].ord
|
568
|
+
_trans = if ( _slen > 0 &&
|
569
|
+
_bel_trans_keys[_keys] <= _wide &&
|
570
|
+
_wide <= _bel_trans_keys[_keys + 1]
|
571
|
+
) then
|
572
|
+
_bel_indicies[ _inds + _wide - _bel_trans_keys[_keys] ]
|
573
|
+
else
|
574
|
+
_bel_indicies[ _inds + _slen ]
|
575
|
+
end
|
576
|
+
cs = _bel_trans_targs[_trans]
|
577
|
+
if _bel_trans_actions[_trans] != 0
|
578
|
+
case _bel_trans_actions[_trans]
|
579
|
+
when 5 then
|
580
|
+
begin
|
581
|
+
|
582
|
+
(@buffers[:ident] ||= []) << data[p].ord
|
583
|
+
end
|
584
|
+
when 2 then
|
585
|
+
begin
|
586
|
+
|
587
|
+
unless @buffers[:ident].is_a?(::AST::Node)
|
588
|
+
@buffers[:ident] ||= []
|
589
|
+
@buffers[:ident] = identifier(utf8_string(@buffers[:ident]).sub(/\n$/, ''))
|
590
|
+
end
|
591
|
+
end
|
592
|
+
when 1 then
|
593
|
+
begin
|
594
|
+
|
595
|
+
@buffers[:unset] = unset()
|
596
|
+
end
|
597
|
+
when 3 then
|
598
|
+
begin
|
599
|
+
|
600
|
+
@buffers[:ident] = []
|
601
|
+
end
|
602
|
+
begin
|
603
|
+
|
604
|
+
(@buffers[:ident] ||= []) << data[p].ord
|
605
|
+
end
|
606
|
+
when 7 then
|
607
|
+
begin
|
608
|
+
|
609
|
+
@buffers[:ident] = identifier(utf8_string(@buffers[:ident]))
|
610
|
+
end
|
611
|
+
begin
|
612
|
+
|
613
|
+
yield @buffers[:ident]
|
614
|
+
end
|
615
|
+
when 6 then
|
616
|
+
begin
|
617
|
+
|
618
|
+
unless @buffers[:ident].is_a?(::AST::Node)
|
619
|
+
@buffers[:ident] ||= []
|
620
|
+
@buffers[:ident] = identifier(utf8_string(@buffers[:ident]).sub(/\n$/, ''))
|
621
|
+
end
|
622
|
+
end
|
623
|
+
begin
|
624
|
+
|
625
|
+
@buffers[:ident] ||= []
|
626
|
+
yield @buffers[:ident]
|
627
|
+
end
|
628
|
+
when 4 then
|
629
|
+
begin
|
630
|
+
|
631
|
+
@buffers[:ident] = identifier(utf8_string(@buffers[:ident]))
|
632
|
+
end
|
633
|
+
begin
|
634
|
+
|
635
|
+
@buffers[:unset] = @buffers[:unset] << name(@buffers[:ident])
|
636
|
+
end
|
637
|
+
begin
|
638
|
+
|
639
|
+
yield @buffers[:unset]
|
640
|
+
end
|
641
|
+
end
|
642
|
+
end
|
643
|
+
end
|
644
|
+
if _goto_level <= _again
|
645
|
+
if cs == 0
|
646
|
+
_goto_level = _out
|
647
|
+
next
|
648
|
+
end
|
649
|
+
p += 1
|
650
|
+
if p != pe
|
651
|
+
_goto_level = _resume
|
652
|
+
next
|
653
|
+
end
|
654
|
+
end
|
655
|
+
if _goto_level <= _test_eof
|
656
|
+
if p == eof
|
657
|
+
case _bel_eof_actions[cs]
|
658
|
+
when 2 then
|
659
|
+
begin
|
660
|
+
|
661
|
+
unless @buffers[:ident].is_a?(::AST::Node)
|
662
|
+
@buffers[:ident] ||= []
|
663
|
+
@buffers[:ident] = identifier(utf8_string(@buffers[:ident]).sub(/\n$/, ''))
|
664
|
+
end
|
665
|
+
end
|
666
|
+
when 6 then
|
667
|
+
begin
|
668
|
+
|
669
|
+
unless @buffers[:ident].is_a?(::AST::Node)
|
670
|
+
@buffers[:ident] ||= []
|
671
|
+
@buffers[:ident] = identifier(utf8_string(@buffers[:ident]).sub(/\n$/, ''))
|
672
|
+
end
|
673
|
+
end
|
674
|
+
begin
|
675
|
+
|
676
|
+
@buffers[:ident] ||= []
|
677
|
+
yield @buffers[:ident]
|
678
|
+
end
|
679
|
+
end
|
680
|
+
end
|
681
|
+
|
682
|
+
end
|
683
|
+
if _goto_level <= _out
|
684
|
+
break
|
685
|
+
end
|
686
|
+
end
|
687
|
+
end
|
688
|
+
|
689
|
+
# end: ragel
|
690
|
+
end
|
691
|
+
end
|
692
|
+
end
|
693
|
+
end
|
694
|
+
end
|
695
|
+
end
|
696
|
+
|
697
|
+
if __FILE__ == $0
|
698
|
+
$stdin.each_line do |line|
|
699
|
+
BELParser::Parsers::BELScript::Unset.parse(line) { |obj|
|
700
|
+
puts obj.inspect
|
701
|
+
}
|
702
|
+
end
|
703
|
+
end
|
704
|
+
|
705
|
+
# vim: ft=ruby ts=2 sw=2:
|
706
|
+
# encoding: utf-8
|