bel 0.7.0 → 1.0.0

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Files changed (105) hide show
  1. checksums.yaml +4 -4
  2. data/{bel.gemspec → .gemspec} +8 -4
  3. data/README.md +3 -3
  4. data/VERSION +1 -0
  5. data/bin/bel +8 -8
  6. data/bin/bel2rdf.rb +1 -1
  7. data/bin/bel_summarize.rb +4 -4
  8. data/bin/bel_upgrade.rb +6 -6
  9. data/lib/bel.rb +3 -2
  10. data/lib/bel/completion.rb +13 -10
  11. data/lib/bel/completion_rule.rb +29 -21
  12. data/lib/bel/dsl.rb +75 -0
  13. data/lib/bel/gen.rb +2 -2
  14. data/lib/bel/gen/annotation.rb +2 -2
  15. data/lib/bel/gen/citation.rb +6 -6
  16. data/lib/bel/gen/document_header.rb +1 -1
  17. data/lib/bel/gen/{evidence.rb → nanopub.rb} +15 -15
  18. data/lib/bel/gen/parameter.rb +6 -6
  19. data/lib/bel/gen/sample_resources.rb +4 -4
  20. data/lib/bel/gen/statement.rb +1 -1
  21. data/lib/bel/gen/term.rb +1 -1
  22. data/lib/bel/language.rb +0 -20
  23. data/lib/bel/namespace.rb +7 -3
  24. data/lib/bel/nanopub.rb +15 -0
  25. data/lib/bel/{evidence_model/buffering_evidence_combiner.rb → nanopub/buffering_nanopub_combiner.rb} +39 -45
  26. data/lib/bel/{evidence_model → nanopub}/citation.rb +2 -2
  27. data/lib/bel/{evidence_model → nanopub}/experiment_context.rb +7 -1
  28. data/lib/bel/{evidence_model → nanopub}/hash_map_references.rb +1 -1
  29. data/lib/bel/{evidence_model → nanopub}/map_references.rb +1 -1
  30. data/lib/bel/nanopub/map_references_combiner.rb +30 -0
  31. data/lib/bel/nanopub/metadata.rb +102 -0
  32. data/lib/bel/nanopub/nanopub.rb +122 -0
  33. data/lib/bel/{evidence_model → nanopub}/references.rb +50 -38
  34. data/lib/bel/{evidence_model/streaming_evidence_combiner.rb → nanopub/streaming_nanopub_combiner.rb} +8 -8
  35. data/lib/bel/{evidence_model/summary_text.rb → nanopub/support.rb} +8 -2
  36. data/lib/bel/{evidence_model → nanopub}/util.rb +10 -10
  37. data/lib/bel/resource/annotation.rb +15 -24
  38. data/lib/bel/resource/annotation_value.rb +24 -20
  39. data/lib/bel/resource/annotations.rb +12 -11
  40. data/lib/bel/resource/concept.rb +62 -0
  41. data/lib/bel/resource/concept_scheme.rb +49 -0
  42. data/lib/bel/resource/namespace.rb +15 -24
  43. data/lib/bel/resource/namespace_value.rb +26 -23
  44. data/lib/bel/resource/namespaces.rb +11 -11
  45. data/lib/bel/script.rb +367 -367
  46. data/lib/bel/translate.rb +7 -7
  47. data/lib/bel/translator.rb +10 -10
  48. data/lib/bel/translator/plugins/bnj.rb +37 -0
  49. data/lib/bel/translator/plugins/{json_evidence → bnj}/translator.rb +17 -34
  50. data/lib/bel/translator/plugins/jgf.rb +1 -1
  51. data/lib/bel/translator/plugins/jgf/translator.rb +10 -10
  52. data/lib/bel/translator/plugins/jsonld.rb +1 -1
  53. data/lib/bel/translator/plugins/nquads.rb +1 -1
  54. data/lib/bel/translator/plugins/ntriples.rb +1 -1
  55. data/lib/bel/translator/plugins/rdf/bel_schema.rb +134 -126
  56. data/lib/bel/translator/plugins/rdf/graph_translator.rb +6 -6
  57. data/lib/bel/translator/plugins/rdf/monkey_patch.rb +50 -49
  58. data/lib/bel/translator/plugins/rdf/reader.rb +42 -42
  59. data/lib/bel/translator/plugins/rdf/translator.rb +6 -6
  60. data/lib/bel/translator/plugins/rdf/writer.rb +4 -4
  61. data/lib/bel/translator/plugins/rdf2/belv2_0.rb +416 -0
  62. data/lib/bel/translator/plugins/rdf2/converter.rb +13 -0
  63. data/lib/bel/translator/plugins/rdf2/namespace_converter.rb +24 -0
  64. data/lib/bel/translator/plugins/rdf2/nanopub_converter.rb +82 -0
  65. data/lib/bel/translator/plugins/rdf2/parameter_converter.rb +50 -0
  66. data/lib/bel/translator/plugins/rdf2/rdf_converter.rb +13 -0
  67. data/lib/bel/translator/plugins/rdf2/rdf_writer.rb +63 -0
  68. data/lib/bel/translator/plugins/rdf2/reader.rb +172 -0
  69. data/lib/bel/translator/plugins/rdf2/relationship_converter.rb +49 -0
  70. data/lib/bel/translator/plugins/rdf2/statement_converter.rb +65 -0
  71. data/lib/bel/translator/plugins/rdf2/term_converter.rb +262 -0
  72. data/lib/bel/translator/plugins/rdf2/translator.rb +51 -0
  73. data/lib/bel/translator/plugins/rdf2/uuid.rb +20 -0
  74. data/lib/bel/translator/plugins/rdf2/writer.rb +53 -0
  75. data/lib/bel/translator/plugins/rdfa.rb +1 -1
  76. data/lib/bel/translator/plugins/rdfxml.rb +1 -1
  77. data/lib/bel/translator/plugins/rj.rb +1 -1
  78. data/lib/bel/translator/plugins/trig.rb +1 -1
  79. data/lib/bel/translator/plugins/trix.rb +1 -1
  80. data/lib/bel/translator/plugins/turtle.rb +3 -6
  81. data/lib/bel/translator/plugins/xbel.rb +5 -6
  82. data/lib/bel/translator/plugins/xbel/nanopub_handler.rb +625 -0
  83. data/lib/bel/translator/plugins/xbel/{evidence_yielder.rb → nanopub_yielder.rb} +3 -3
  84. data/lib/bel/translator/plugins/xbel/translator.rb +2 -5
  85. data/lib/bel/translator/plugins/xbel/xbel_yielder.rb +135 -74
  86. data/lib/bel/version.rb +31 -1
  87. metadata +81 -33
  88. data/lib/bel/evidence_model.rb +0 -15
  89. data/lib/bel/evidence_model/bel_parameter.rb +0 -56
  90. data/lib/bel/evidence_model/bel_statement.rb +0 -97
  91. data/lib/bel/evidence_model/bel_term.rb +0 -87
  92. data/lib/bel/evidence_model/evidence.rb +0 -127
  93. data/lib/bel/evidence_model/map_references_combiner.rb +0 -30
  94. data/lib/bel/evidence_model/metadata.rb +0 -49
  95. data/lib/bel/parser.rb +0 -39
  96. data/lib/bel/translator/plugins/bel_script.rb +0 -36
  97. data/lib/bel/translator/plugins/bel_script/bel_citation_serialization.rb +0 -125
  98. data/lib/bel/translator/plugins/bel_script/bel_discrete_serialization.rb +0 -109
  99. data/lib/bel/translator/plugins/bel_script/bel_top_down_serialization.rb +0 -100
  100. data/lib/bel/translator/plugins/bel_script/bel_yielder.rb +0 -180
  101. data/lib/bel/translator/plugins/bel_script/evidence_serialization.rb +0 -79
  102. data/lib/bel/translator/plugins/bel_script/evidence_yielder.rb +0 -87
  103. data/lib/bel/translator/plugins/bel_script/translator.rb +0 -35
  104. data/lib/bel/translator/plugins/json_evidence.rb +0 -38
  105. data/lib/bel/translator/plugins/xbel/evidence_handler.rb +0 -495
@@ -1,34 +1,51 @@
1
1
  require 'rdf'
2
+ require 'rdf/vocab'
3
+ require_relative 'concept'
2
4
  require_relative 'namespace'
3
5
  require_relative 'namespaces'
4
6
 
5
7
  module BEL
6
8
  module Resource
7
-
8
- # TODO Document
9
+ # NamespaceValue represents a NamespaceConcept RDF Resource and
10
+ # associated properties.
9
11
  class NamespaceValue
12
+ include Concept
10
13
 
11
14
  attr_reader :uri
12
15
 
13
- # TODO Document
16
+ DC = RDF::Vocab::DC
17
+ SKOS = RDF::Vocab::SKOS
18
+ BELV = RDF::Vocabulary.new('http://www.openbel.org/vocabulary/')
19
+
14
20
  def initialize(rdf_repository, uri)
15
21
  @rdf_repository = rdf_repository
16
22
  @uri = RDF::URI(uri.to_s)
17
23
  @uri_hash = @uri.hash
18
24
  @eq_query = [
19
25
  :subject => @uri,
20
- :predicate => RDF::SKOS.exactMatch
26
+ :predicate => SKOS.exactMatch
21
27
  ]
22
28
  @ortho_query = [
23
29
  :subject => @uri,
24
30
  :predicate => BELV.orthologousMatch
25
31
  ]
26
- @predicates = @rdf_repository.query(:subject => @uri).
27
- each.map(&:predicate).uniq
28
32
  end
29
33
 
30
34
  def namespace
31
- Namespace.new(@rdf_repository, self.inScheme)
35
+ schemes = in_scheme
36
+ return nil if schemes.empty?
37
+ Namespace.new(@rdf_repository, schemes.first)
38
+ end
39
+
40
+ def in_scheme
41
+ @rdf_repository
42
+ .query([:subject => @uri, :predicate => SKOS.inScheme])
43
+ .select { |solution|
44
+ scheme_uri = solution.object
45
+ @rdf_repository.has_statement?(
46
+ RDF::Statement(scheme_uri, RDF.type, BELV.NamespaceConceptScheme)
47
+ )
48
+ }.map { |solution| solution.object.to_s }
32
49
  end
33
50
 
34
51
  def equivalents(target_namespaces = :all)
@@ -48,7 +65,7 @@ module BEL
48
65
  query(@eq_query).map { |solution|
49
66
  NamespaceValue.new(@rdf_repository, solution.object)
50
67
  }.select { |value|
51
- scheme_uri = value.inScheme
68
+ scheme_uri = value.in_scheme
52
69
  target_namespaces.include?(scheme_uri)
53
70
  }.each { |value|
54
71
  yield value
@@ -73,7 +90,7 @@ module BEL
73
90
  query(@ortho_query).map { |solution|
74
91
  NamespaceValue.new(@rdf_repository, solution.object)
75
92
  }.select { |value|
76
- scheme_uri = value.inScheme
93
+ scheme_uri = value.in_scheme
77
94
  target_namespaces.include?(scheme_uri)
78
95
  }.each { |value|
79
96
  yield value
@@ -90,20 +107,6 @@ module BEL
90
107
  @uri == other.uri
91
108
  end
92
109
  alias_method :eql?, :'=='
93
-
94
- protected
95
-
96
- def method_missing(method)
97
- method_predicate = @predicates.find { |p|
98
- p.qname[1].to_sym == method.to_sym
99
- }
100
- return nil unless method_predicate
101
- objects = @rdf_repository.query(
102
- :subject => @uri,
103
- :predicate => method_predicate
104
- ).each.map(&:object)
105
- objects.size == 1 ? objects.first : objects.to_a
106
- end
107
110
  end
108
111
  end
109
112
  end
@@ -1,28 +1,28 @@
1
1
  require 'rdf'
2
+ require 'rdf/vocab'
2
3
  require_relative 'namespace'
3
4
 
4
5
  module BEL
5
6
  module Resource
6
-
7
- # TODO Document
7
+ # Namespaces allows access to all NamespaceConceptScheme RDF Resources
8
+ # available in the resources dataset.
8
9
  class Namespaces
9
10
 
10
- # TODO Document
11
- QUERY_NAMESPACES = RDF::Query.new do
12
- pattern [:uri, RDF.type, BELV.NamespaceConceptScheme]
13
- end
11
+ BELV = RDF::Vocabulary.new('http://www.openbel.org/vocabulary/')
12
+ SKOS = RDF::Vocab::SKOS
14
13
 
15
- # TODO Document
16
14
  def initialize(rdf_repository)
17
15
  @rdf_repository = rdf_repository
18
16
  end
19
17
 
20
- # TODO Document
21
18
  def each
22
19
  return to_enum(:each) unless block_given?
23
20
  @rdf_repository.
24
- query(QUERY_NAMESPACES) { |solution|
25
- yield Namespace.new(@rdf_repository, solution.uri)
21
+ query(
22
+ :predicate => RDF.type,
23
+ :object => BELV.NamespaceConceptScheme) { |solution|
24
+
25
+ yield Namespace.new(@rdf_repository, solution.subject)
26
26
  }
27
27
  end
28
28
 
@@ -58,7 +58,7 @@ module BEL
58
58
 
59
59
  # match input as namespace prefLabel
60
60
  label = namespace_query(
61
- :predicate => RDF::SKOS.prefLabel,
61
+ :predicate => SKOS.prefLabel,
62
62
  :object => nlit
63
63
  )
64
64
  return Namespace.new(@rdf_repository, label.subject) if label
@@ -8805,7 +8805,7 @@ begin
8805
8805
 
8806
8806
  if @statement.relationship == :hasComponents
8807
8807
  @statement.object.arguments.each do |arg|
8808
- statement = BEL::Model::Statement.new(
8808
+ statement = BEL::Nanopub::Statement.new(
8809
8809
  @statement.subject, :hasComponent, arg, @statement.comment
8810
8810
  )
8811
8811
  statement.annotations = @statement.annotations
@@ -8813,7 +8813,7 @@ begin
8813
8813
  end
8814
8814
  elsif @statement.relationship == :hasMembers
8815
8815
  @statement.object.arguments.each do |arg|
8816
- statement = BEL::Model::Statement.new(
8816
+ statement = BEL::Nanopub::Statement.new(
8817
8817
  @statement.subject, :hasMember, arg, @statement.comment
8818
8818
  )
8819
8819
  statement.annotations = @statement.annotations
@@ -8866,12 +8866,12 @@ begin
8866
8866
 
8867
8867
  ns =
8868
8868
  if @pfx
8869
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
8869
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
8870
8870
  else
8871
8871
  nil
8872
8872
  end
8873
8873
 
8874
- param = BEL::Model::Parameter.new(ns, val)
8874
+ param = BEL::Nanopub::Parameter.new(ns, val)
8875
8875
  @term_stack.last << param
8876
8876
 
8877
8877
  yield param
@@ -9000,12 +9000,12 @@ begin
9000
9000
 
9001
9001
  ns =
9002
9002
  if @pfx
9003
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
9003
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
9004
9004
  else
9005
9005
  nil
9006
9006
  end
9007
9007
 
9008
- param = BEL::Model::Parameter.new(ns, val)
9008
+ param = BEL::Nanopub::Parameter.new(ns, val)
9009
9009
  @term_stack.last << param
9010
9010
 
9011
9011
  yield param
@@ -9191,7 +9191,7 @@ begin
9191
9191
 
9192
9192
  if @statement.relationship == :hasComponents
9193
9193
  @statement.object.arguments.each do |arg|
9194
- statement = BEL::Model::Statement.new(
9194
+ statement = BEL::Nanopub::Statement.new(
9195
9195
  @statement.subject, :hasComponent, arg, @statement.comment
9196
9196
  )
9197
9197
  statement.annotations = @statement.annotations
@@ -9199,7 +9199,7 @@ begin
9199
9199
  end
9200
9200
  elsif @statement.relationship == :hasMembers
9201
9201
  @statement.object.arguments.each do |arg|
9202
- statement = BEL::Model::Statement.new(
9202
+ statement = BEL::Nanopub::Statement.new(
9203
9203
  @statement.subject, :hasMember, arg, @statement.comment
9204
9204
  )
9205
9205
  statement.annotations = @statement.annotations
@@ -9220,7 +9220,7 @@ begin
9220
9220
  when 110 then
9221
9221
  begin
9222
9222
 
9223
- @statement = BEL::Model::Statement.new()
9223
+ @statement = BEL::Nanopub::Statement.new()
9224
9224
  @statement_stack = [@statement]
9225
9225
  end
9226
9226
  begin
@@ -9261,7 +9261,7 @@ p -= 1; begin
9261
9261
 
9262
9262
  if @statement.relationship == :hasComponents
9263
9263
  @statement.object.arguments.each do |arg|
9264
- statement = BEL::Model::Statement.new(
9264
+ statement = BEL::Nanopub::Statement.new(
9265
9265
  @statement.subject, :hasComponent, arg, @statement.comment
9266
9266
  )
9267
9267
  statement.annotations = @statement.annotations
@@ -9269,7 +9269,7 @@ p -= 1; begin
9269
9269
  end
9270
9270
  elsif @statement.relationship == :hasMembers
9271
9271
  @statement.object.arguments.each do |arg|
9272
- statement = BEL::Model::Statement.new(
9272
+ statement = BEL::Nanopub::Statement.new(
9273
9273
  @statement.subject, :hasMember, arg, @statement.comment
9274
9274
  )
9275
9275
  statement.annotations = @statement.annotations
@@ -9282,7 +9282,7 @@ p -= 1; begin
9282
9282
  when 63 then
9283
9283
  begin
9284
9284
 
9285
- nested = BEL::Model::Statement.new()
9285
+ nested = BEL::Nanopub::Statement.new()
9286
9286
  @statement_stack.last.object = nested
9287
9287
  @statement_stack.push nested
9288
9288
  end
@@ -9311,7 +9311,7 @@ p -= 1; begin
9311
9311
 
9312
9312
  if @statement.relationship == :hasComponents
9313
9313
  @statement.object.arguments.each do |arg|
9314
- statement = BEL::Model::Statement.new(
9314
+ statement = BEL::Nanopub::Statement.new(
9315
9315
  @statement.subject, :hasComponent, arg, @statement.comment
9316
9316
  )
9317
9317
  statement.annotations = @statement.annotations
@@ -9319,7 +9319,7 @@ p -= 1; begin
9319
9319
  end
9320
9320
  elsif @statement.relationship == :hasMembers
9321
9321
  @statement.object.arguments.each do |arg|
9322
- statement = BEL::Model::Statement.new(
9322
+ statement = BEL::Nanopub::Statement.new(
9323
9323
  @statement.subject, :hasMember, arg, @statement.comment
9324
9324
  )
9325
9325
  statement.annotations = @statement.annotations
@@ -9408,7 +9408,7 @@ p -= 1; begin
9408
9408
  begin
9409
9409
 
9410
9410
  fx = @name.to_sym
9411
- @term_stack.push(BEL::Model::Term.new(fx, []))
9411
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
9412
9412
  @pfx = nil
9413
9413
  @pbuf = []
9414
9414
  end
@@ -9432,12 +9432,12 @@ p -= 1; begin
9432
9432
 
9433
9433
  ns =
9434
9434
  if @pfx
9435
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
9435
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
9436
9436
  else
9437
9437
  nil
9438
9438
  end
9439
9439
 
9440
- param = BEL::Model::Parameter.new(ns, val)
9440
+ param = BEL::Nanopub::Parameter.new(ns, val)
9441
9441
  @term_stack.last << param
9442
9442
 
9443
9443
  yield param
@@ -9543,7 +9543,7 @@ n = 0 end
9543
9543
  begin
9544
9544
 
9545
9545
  fx = @name.to_sym
9546
- @term_stack.push(BEL::Model::Term.new(fx, []))
9546
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
9547
9547
  @pfx = nil
9548
9548
  @pbuf = []
9549
9549
  end
@@ -9733,7 +9733,7 @@ n = 0 end
9733
9733
 
9734
9734
  if @statement.relationship == :hasComponents
9735
9735
  @statement.object.arguments.each do |arg|
9736
- statement = BEL::Model::Statement.new(
9736
+ statement = BEL::Nanopub::Statement.new(
9737
9737
  @statement.subject, :hasComponent, arg, @statement.comment
9738
9738
  )
9739
9739
  statement.annotations = @statement.annotations
@@ -9741,7 +9741,7 @@ n = 0 end
9741
9741
  end
9742
9742
  elsif @statement.relationship == :hasMembers
9743
9743
  @statement.object.arguments.each do |arg|
9744
- statement = BEL::Model::Statement.new(
9744
+ statement = BEL::Nanopub::Statement.new(
9745
9745
  @statement.subject, :hasMember, arg, @statement.comment
9746
9746
  )
9747
9747
  statement.annotations = @statement.annotations
@@ -9777,7 +9777,7 @@ n = 0 end
9777
9777
 
9778
9778
  if @statement.relationship == :hasComponents
9779
9779
  @statement.object.arguments.each do |arg|
9780
- statement = BEL::Model::Statement.new(
9780
+ statement = BEL::Nanopub::Statement.new(
9781
9781
  @statement.subject, :hasComponent, arg, @statement.comment
9782
9782
  )
9783
9783
  statement.annotations = @statement.annotations
@@ -9785,7 +9785,7 @@ n = 0 end
9785
9785
  end
9786
9786
  elsif @statement.relationship == :hasMembers
9787
9787
  @statement.object.arguments.each do |arg|
9788
- statement = BEL::Model::Statement.new(
9788
+ statement = BEL::Nanopub::Statement.new(
9789
9789
  @statement.subject, :hasMember, arg, @statement.comment
9790
9790
  )
9791
9791
  statement.annotations = @statement.annotations
@@ -9834,7 +9834,7 @@ n = 0 end
9834
9834
  end
9835
9835
  begin
9836
9836
 
9837
- nested = BEL::Model::Statement.new()
9837
+ nested = BEL::Nanopub::Statement.new()
9838
9838
  @statement_stack.last.object = nested
9839
9839
  @statement_stack.push nested
9840
9840
  end
@@ -9878,7 +9878,7 @@ n = 0 end
9878
9878
  @cmtbuffer << data[p].ord end
9879
9879
  begin
9880
9880
 
9881
- nested = BEL::Model::Statement.new()
9881
+ nested = BEL::Nanopub::Statement.new()
9882
9882
  @statement_stack.last.object = nested
9883
9883
  @statement_stack.push nested
9884
9884
  end
@@ -9919,7 +9919,7 @@ n = 0 end
9919
9919
 
9920
9920
  if @statement.relationship == :hasComponents
9921
9921
  @statement.object.arguments.each do |arg|
9922
- statement = BEL::Model::Statement.new(
9922
+ statement = BEL::Nanopub::Statement.new(
9923
9923
  @statement.subject, :hasComponent, arg, @statement.comment
9924
9924
  )
9925
9925
  statement.annotations = @statement.annotations
@@ -9927,7 +9927,7 @@ n = 0 end
9927
9927
  end
9928
9928
  elsif @statement.relationship == :hasMembers
9929
9929
  @statement.object.arguments.each do |arg|
9930
- statement = BEL::Model::Statement.new(
9930
+ statement = BEL::Nanopub::Statement.new(
9931
9931
  @statement.subject, :hasMember, arg, @statement.comment
9932
9932
  )
9933
9933
  statement.annotations = @statement.annotations
@@ -9964,7 +9964,7 @@ n = 0 end
9964
9964
 
9965
9965
  if @statement.relationship == :hasComponents
9966
9966
  @statement.object.arguments.each do |arg|
9967
- statement = BEL::Model::Statement.new(
9967
+ statement = BEL::Nanopub::Statement.new(
9968
9968
  @statement.subject, :hasComponent, arg, @statement.comment
9969
9969
  )
9970
9970
  statement.annotations = @statement.annotations
@@ -9972,7 +9972,7 @@ n = 0 end
9972
9972
  end
9973
9973
  elsif @statement.relationship == :hasMembers
9974
9974
  @statement.object.arguments.each do |arg|
9975
- statement = BEL::Model::Statement.new(
9975
+ statement = BEL::Nanopub::Statement.new(
9976
9976
  @statement.subject, :hasMember, arg, @statement.comment
9977
9977
  )
9978
9978
  statement.annotations = @statement.annotations
@@ -9998,7 +9998,7 @@ n = 0 end
9998
9998
  begin
9999
9999
 
10000
10000
  fx = @name.to_sym
10001
- @term_stack.push(BEL::Model::Term.new(fx, []))
10001
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
10002
10002
  @pfx = nil
10003
10003
  @pbuf = []
10004
10004
  end
@@ -10027,7 +10027,7 @@ n = 0 end
10027
10027
  p -= 1; end
10028
10028
  begin
10029
10029
 
10030
- @statement = BEL::Model::Statement.new()
10030
+ @statement = BEL::Nanopub::Statement.new()
10031
10031
  @statement_stack = [@statement]
10032
10032
  end
10033
10033
  begin
@@ -10051,7 +10051,7 @@ p -= 1; end
10051
10051
  begin
10052
10052
 
10053
10053
  fx = @name.to_sym
10054
- @term_stack.push(BEL::Model::Term.new(fx, []))
10054
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
10055
10055
  @pfx = nil
10056
10056
  @pbuf = []
10057
10057
  end
@@ -10109,7 +10109,7 @@ p -= 1; end
10109
10109
  p -= 1; end
10110
10110
  begin
10111
10111
 
10112
- @statement = BEL::Model::Statement.new()
10112
+ @statement = BEL::Nanopub::Statement.new()
10113
10113
  @statement_stack = [@statement]
10114
10114
  end
10115
10115
  begin
@@ -10137,7 +10137,7 @@ p -= 1; end
10137
10137
  p -= 1; end
10138
10138
  begin
10139
10139
 
10140
- @statement = BEL::Model::Statement.new()
10140
+ @statement = BEL::Nanopub::Statement.new()
10141
10141
  @statement_stack = [@statement]
10142
10142
  end
10143
10143
  begin
@@ -10165,7 +10165,7 @@ p -= 1; end
10165
10165
  p -= 1; end
10166
10166
  begin
10167
10167
 
10168
- @statement = BEL::Model::Statement.new()
10168
+ @statement = BEL::Nanopub::Statement.new()
10169
10169
  @statement_stack = [@statement]
10170
10170
  end
10171
10171
  begin
@@ -10193,7 +10193,7 @@ p -= 1; end
10193
10193
  p -= 1; end
10194
10194
  begin
10195
10195
 
10196
- @statement = BEL::Model::Statement.new()
10196
+ @statement = BEL::Nanopub::Statement.new()
10197
10197
  @statement_stack = [@statement]
10198
10198
  end
10199
10199
  begin
@@ -10221,7 +10221,7 @@ p -= 1; end
10221
10221
 
10222
10222
  if @statement.relationship == :hasComponents
10223
10223
  @statement.object.arguments.each do |arg|
10224
- statement = BEL::Model::Statement.new(
10224
+ statement = BEL::Nanopub::Statement.new(
10225
10225
  @statement.subject, :hasComponent, arg, @statement.comment
10226
10226
  )
10227
10227
  statement.annotations = @statement.annotations
@@ -10229,7 +10229,7 @@ p -= 1; end
10229
10229
  end
10230
10230
  elsif @statement.relationship == :hasMembers
10231
10231
  @statement.object.arguments.each do |arg|
10232
- statement = BEL::Model::Statement.new(
10232
+ statement = BEL::Nanopub::Statement.new(
10233
10233
  @statement.subject, :hasMember, arg, @statement.comment
10234
10234
  )
10235
10235
  statement.annotations = @statement.annotations
@@ -10265,7 +10265,7 @@ n = 0 end
10265
10265
 
10266
10266
  if @statement.relationship == :hasComponents
10267
10267
  @statement.object.arguments.each do |arg|
10268
- statement = BEL::Model::Statement.new(
10268
+ statement = BEL::Nanopub::Statement.new(
10269
10269
  @statement.subject, :hasComponent, arg, @statement.comment
10270
10270
  )
10271
10271
  statement.annotations = @statement.annotations
@@ -10273,7 +10273,7 @@ n = 0 end
10273
10273
  end
10274
10274
  elsif @statement.relationship == :hasMembers
10275
10275
  @statement.object.arguments.each do |arg|
10276
- statement = BEL::Model::Statement.new(
10276
+ statement = BEL::Nanopub::Statement.new(
10277
10277
  @statement.subject, :hasMember, arg, @statement.comment
10278
10278
  )
10279
10279
  statement.annotations = @statement.annotations
@@ -10335,7 +10335,7 @@ n = 0 end
10335
10335
  end
10336
10336
  begin
10337
10337
 
10338
- nested = BEL::Model::Statement.new()
10338
+ nested = BEL::Nanopub::Statement.new()
10339
10339
  @statement_stack.last.object = nested
10340
10340
  @statement_stack.push nested
10341
10341
  end
@@ -10371,7 +10371,7 @@ n = 0 end
10371
10371
 
10372
10372
  if @statement.relationship == :hasComponents
10373
10373
  @statement.object.arguments.each do |arg|
10374
- statement = BEL::Model::Statement.new(
10374
+ statement = BEL::Nanopub::Statement.new(
10375
10375
  @statement.subject, :hasComponent, arg, @statement.comment
10376
10376
  )
10377
10377
  statement.annotations = @statement.annotations
@@ -10379,7 +10379,7 @@ n = 0 end
10379
10379
  end
10380
10380
  elsif @statement.relationship == :hasMembers
10381
10381
  @statement.object.arguments.each do |arg|
10382
- statement = BEL::Model::Statement.new(
10382
+ statement = BEL::Nanopub::Statement.new(
10383
10383
  @statement.subject, :hasMember, arg, @statement.comment
10384
10384
  )
10385
10385
  statement.annotations = @statement.annotations
@@ -10412,7 +10412,7 @@ n = 0 end
10412
10412
 
10413
10413
  if @statement.relationship == :hasComponents
10414
10414
  @statement.object.arguments.each do |arg|
10415
- statement = BEL::Model::Statement.new(
10415
+ statement = BEL::Nanopub::Statement.new(
10416
10416
  @statement.subject, :hasComponent, arg, @statement.comment
10417
10417
  )
10418
10418
  statement.annotations = @statement.annotations
@@ -10420,7 +10420,7 @@ n = 0 end
10420
10420
  end
10421
10421
  elsif @statement.relationship == :hasMembers
10422
10422
  @statement.object.arguments.each do |arg|
10423
- statement = BEL::Model::Statement.new(
10423
+ statement = BEL::Nanopub::Statement.new(
10424
10424
  @statement.subject, :hasMember, arg, @statement.comment
10425
10425
  )
10426
10426
  statement.annotations = @statement.annotations
@@ -10463,7 +10463,7 @@ n = 0 end
10463
10463
 
10464
10464
  if @statement.relationship == :hasComponents
10465
10465
  @statement.object.arguments.each do |arg|
10466
- statement = BEL::Model::Statement.new(
10466
+ statement = BEL::Nanopub::Statement.new(
10467
10467
  @statement.subject, :hasComponent, arg, @statement.comment
10468
10468
  )
10469
10469
  statement.annotations = @statement.annotations
@@ -10471,7 +10471,7 @@ n = 0 end
10471
10471
  end
10472
10472
  elsif @statement.relationship == :hasMembers
10473
10473
  @statement.object.arguments.each do |arg|
10474
- statement = BEL::Model::Statement.new(
10474
+ statement = BEL::Nanopub::Statement.new(
10475
10475
  @statement.subject, :hasMember, arg, @statement.comment
10476
10476
  )
10477
10477
  statement.annotations = @statement.annotations
@@ -10491,7 +10491,7 @@ n = 0 end
10491
10491
  begin
10492
10492
 
10493
10493
  fx = @name.to_sym
10494
- @term_stack.push(BEL::Model::Term.new(fx, []))
10494
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
10495
10495
  @pfx = nil
10496
10496
  @pbuf = []
10497
10497
  end
@@ -10521,7 +10521,7 @@ n = 0 end
10521
10521
 
10522
10522
  if @statement.relationship == :hasComponents
10523
10523
  @statement.object.arguments.each do |arg|
10524
- statement = BEL::Model::Statement.new(
10524
+ statement = BEL::Nanopub::Statement.new(
10525
10525
  @statement.subject, :hasComponent, arg, @statement.comment
10526
10526
  )
10527
10527
  statement.annotations = @statement.annotations
@@ -10529,7 +10529,7 @@ n = 0 end
10529
10529
  end
10530
10530
  elsif @statement.relationship == :hasMembers
10531
10531
  @statement.object.arguments.each do |arg|
10532
- statement = BEL::Model::Statement.new(
10532
+ statement = BEL::Nanopub::Statement.new(
10533
10533
  @statement.subject, :hasMember, arg, @statement.comment
10534
10534
  )
10535
10535
  statement.annotations = @statement.annotations
@@ -10566,7 +10566,7 @@ n = 0 end
10566
10566
 
10567
10567
  if @statement.relationship == :hasComponents
10568
10568
  @statement.object.arguments.each do |arg|
10569
- statement = BEL::Model::Statement.new(
10569
+ statement = BEL::Nanopub::Statement.new(
10570
10570
  @statement.subject, :hasComponent, arg, @statement.comment
10571
10571
  )
10572
10572
  statement.annotations = @statement.annotations
@@ -10574,7 +10574,7 @@ n = 0 end
10574
10574
  end
10575
10575
  elsif @statement.relationship == :hasMembers
10576
10576
  @statement.object.arguments.each do |arg|
10577
- statement = BEL::Model::Statement.new(
10577
+ statement = BEL::Nanopub::Statement.new(
10578
10578
  @statement.subject, :hasMember, arg, @statement.comment
10579
10579
  )
10580
10580
  statement.annotations = @statement.annotations
@@ -10643,7 +10643,7 @@ n = 0 end
10643
10643
  p -= 1; end
10644
10644
  begin
10645
10645
 
10646
- @statement = BEL::Model::Statement.new()
10646
+ @statement = BEL::Nanopub::Statement.new()
10647
10647
  @statement_stack = [@statement]
10648
10648
  end
10649
10649
  begin
@@ -10669,7 +10669,7 @@ p -= 1; end
10669
10669
  begin
10670
10670
 
10671
10671
  fx = @name.to_sym
10672
- @term_stack.push(BEL::Model::Term.new(fx, []))
10672
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
10673
10673
  @pfx = nil
10674
10674
  @pbuf = []
10675
10675
  end
@@ -10729,7 +10729,7 @@ p -= 1; end
10729
10729
 
10730
10730
  if @statement.relationship == :hasComponents
10731
10731
  @statement.object.arguments.each do |arg|
10732
- statement = BEL::Model::Statement.new(
10732
+ statement = BEL::Nanopub::Statement.new(
10733
10733
  @statement.subject, :hasComponent, arg, @statement.comment
10734
10734
  )
10735
10735
  statement.annotations = @statement.annotations
@@ -10737,7 +10737,7 @@ p -= 1; end
10737
10737
  end
10738
10738
  elsif @statement.relationship == :hasMembers
10739
10739
  @statement.object.arguments.each do |arg|
10740
- statement = BEL::Model::Statement.new(
10740
+ statement = BEL::Nanopub::Statement.new(
10741
10741
  @statement.subject, :hasMember, arg, @statement.comment
10742
10742
  )
10743
10743
  statement.annotations = @statement.annotations
@@ -10778,7 +10778,7 @@ n = 0 end
10778
10778
 
10779
10779
  if @statement.relationship == :hasComponents
10780
10780
  @statement.object.arguments.each do |arg|
10781
- statement = BEL::Model::Statement.new(
10781
+ statement = BEL::Nanopub::Statement.new(
10782
10782
  @statement.subject, :hasComponent, arg, @statement.comment
10783
10783
  )
10784
10784
  statement.annotations = @statement.annotations
@@ -10786,7 +10786,7 @@ n = 0 end
10786
10786
  end
10787
10787
  elsif @statement.relationship == :hasMembers
10788
10788
  @statement.object.arguments.each do |arg|
10789
- statement = BEL::Model::Statement.new(
10789
+ statement = BEL::Nanopub::Statement.new(
10790
10790
  @statement.subject, :hasMember, arg, @statement.comment
10791
10791
  )
10792
10792
  statement.annotations = @statement.annotations
@@ -10821,12 +10821,12 @@ n = 0 end
10821
10821
 
10822
10822
  ns =
10823
10823
  if @pfx
10824
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
10824
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
10825
10825
  else
10826
10826
  nil
10827
10827
  end
10828
10828
 
10829
- param = BEL::Model::Parameter.new(ns, val)
10829
+ param = BEL::Nanopub::Parameter.new(ns, val)
10830
10830
  @term_stack.last << param
10831
10831
 
10832
10832
  yield param
@@ -10876,12 +10876,12 @@ n = 0 end
10876
10876
 
10877
10877
  ns =
10878
10878
  if @pfx
10879
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
10879
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
10880
10880
  else
10881
10881
  nil
10882
10882
  end
10883
10883
 
10884
- param = BEL::Model::Parameter.new(ns, val)
10884
+ param = BEL::Nanopub::Parameter.new(ns, val)
10885
10885
  @term_stack.last << param
10886
10886
 
10887
10887
  yield param
@@ -19802,7 +19802,7 @@ begin
19802
19802
 
19803
19803
  if @statement.relationship == :hasComponents
19804
19804
  @statement.object.arguments.each do |arg|
19805
- statement = BEL::Model::Statement.new(
19805
+ statement = BEL::Nanopub::Statement.new(
19806
19806
  @statement.subject, :hasComponent, arg, @statement.comment
19807
19807
  )
19808
19808
  statement.annotations = @statement.annotations
@@ -19810,7 +19810,7 @@ begin
19810
19810
  end
19811
19811
  elsif @statement.relationship == :hasMembers
19812
19812
  @statement.object.arguments.each do |arg|
19813
- statement = BEL::Model::Statement.new(
19813
+ statement = BEL::Nanopub::Statement.new(
19814
19814
  @statement.subject, :hasMember, arg, @statement.comment
19815
19815
  )
19816
19816
  statement.annotations = @statement.annotations
@@ -19863,12 +19863,12 @@ begin
19863
19863
 
19864
19864
  ns =
19865
19865
  if @pfx
19866
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
19866
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
19867
19867
  else
19868
19868
  nil
19869
19869
  end
19870
19870
 
19871
- param = BEL::Model::Parameter.new(ns, val)
19871
+ param = BEL::Nanopub::Parameter.new(ns, val)
19872
19872
  @term_stack.last << param
19873
19873
 
19874
19874
  yield param
@@ -19997,12 +19997,12 @@ begin
19997
19997
 
19998
19998
  ns =
19999
19999
  if @pfx
20000
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
20000
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
20001
20001
  else
20002
20002
  nil
20003
20003
  end
20004
20004
 
20005
- param = BEL::Model::Parameter.new(ns, val)
20005
+ param = BEL::Nanopub::Parameter.new(ns, val)
20006
20006
  @term_stack.last << param
20007
20007
 
20008
20008
  yield param
@@ -20188,7 +20188,7 @@ begin
20188
20188
 
20189
20189
  if @statement.relationship == :hasComponents
20190
20190
  @statement.object.arguments.each do |arg|
20191
- statement = BEL::Model::Statement.new(
20191
+ statement = BEL::Nanopub::Statement.new(
20192
20192
  @statement.subject, :hasComponent, arg, @statement.comment
20193
20193
  )
20194
20194
  statement.annotations = @statement.annotations
@@ -20196,7 +20196,7 @@ begin
20196
20196
  end
20197
20197
  elsif @statement.relationship == :hasMembers
20198
20198
  @statement.object.arguments.each do |arg|
20199
- statement = BEL::Model::Statement.new(
20199
+ statement = BEL::Nanopub::Statement.new(
20200
20200
  @statement.subject, :hasMember, arg, @statement.comment
20201
20201
  )
20202
20202
  statement.annotations = @statement.annotations
@@ -20217,7 +20217,7 @@ begin
20217
20217
  when 110 then
20218
20218
  begin
20219
20219
 
20220
- @statement = BEL::Model::Statement.new()
20220
+ @statement = BEL::Nanopub::Statement.new()
20221
20221
  @statement_stack = [@statement]
20222
20222
  end
20223
20223
  begin
@@ -20258,7 +20258,7 @@ p -= 1; begin
20258
20258
 
20259
20259
  if @statement.relationship == :hasComponents
20260
20260
  @statement.object.arguments.each do |arg|
20261
- statement = BEL::Model::Statement.new(
20261
+ statement = BEL::Nanopub::Statement.new(
20262
20262
  @statement.subject, :hasComponent, arg, @statement.comment
20263
20263
  )
20264
20264
  statement.annotations = @statement.annotations
@@ -20266,7 +20266,7 @@ p -= 1; begin
20266
20266
  end
20267
20267
  elsif @statement.relationship == :hasMembers
20268
20268
  @statement.object.arguments.each do |arg|
20269
- statement = BEL::Model::Statement.new(
20269
+ statement = BEL::Nanopub::Statement.new(
20270
20270
  @statement.subject, :hasMember, arg, @statement.comment
20271
20271
  )
20272
20272
  statement.annotations = @statement.annotations
@@ -20279,7 +20279,7 @@ p -= 1; begin
20279
20279
  when 63 then
20280
20280
  begin
20281
20281
 
20282
- nested = BEL::Model::Statement.new()
20282
+ nested = BEL::Nanopub::Statement.new()
20283
20283
  @statement_stack.last.object = nested
20284
20284
  @statement_stack.push nested
20285
20285
  end
@@ -20308,7 +20308,7 @@ p -= 1; begin
20308
20308
 
20309
20309
  if @statement.relationship == :hasComponents
20310
20310
  @statement.object.arguments.each do |arg|
20311
- statement = BEL::Model::Statement.new(
20311
+ statement = BEL::Nanopub::Statement.new(
20312
20312
  @statement.subject, :hasComponent, arg, @statement.comment
20313
20313
  )
20314
20314
  statement.annotations = @statement.annotations
@@ -20316,7 +20316,7 @@ p -= 1; begin
20316
20316
  end
20317
20317
  elsif @statement.relationship == :hasMembers
20318
20318
  @statement.object.arguments.each do |arg|
20319
- statement = BEL::Model::Statement.new(
20319
+ statement = BEL::Nanopub::Statement.new(
20320
20320
  @statement.subject, :hasMember, arg, @statement.comment
20321
20321
  )
20322
20322
  statement.annotations = @statement.annotations
@@ -20405,7 +20405,7 @@ p -= 1; begin
20405
20405
  begin
20406
20406
 
20407
20407
  fx = @name.to_sym
20408
- @term_stack.push(BEL::Model::Term.new(fx, []))
20408
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
20409
20409
  @pfx = nil
20410
20410
  @pbuf = []
20411
20411
  end
@@ -20429,12 +20429,12 @@ p -= 1; begin
20429
20429
 
20430
20430
  ns =
20431
20431
  if @pfx
20432
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
20432
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
20433
20433
  else
20434
20434
  nil
20435
20435
  end
20436
20436
 
20437
- param = BEL::Model::Parameter.new(ns, val)
20437
+ param = BEL::Nanopub::Parameter.new(ns, val)
20438
20438
  @term_stack.last << param
20439
20439
 
20440
20440
  yield param
@@ -20540,7 +20540,7 @@ n = 0 end
20540
20540
  begin
20541
20541
 
20542
20542
  fx = @name.to_sym
20543
- @term_stack.push(BEL::Model::Term.new(fx, []))
20543
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
20544
20544
  @pfx = nil
20545
20545
  @pbuf = []
20546
20546
  end
@@ -20730,7 +20730,7 @@ n = 0 end
20730
20730
 
20731
20731
  if @statement.relationship == :hasComponents
20732
20732
  @statement.object.arguments.each do |arg|
20733
- statement = BEL::Model::Statement.new(
20733
+ statement = BEL::Nanopub::Statement.new(
20734
20734
  @statement.subject, :hasComponent, arg, @statement.comment
20735
20735
  )
20736
20736
  statement.annotations = @statement.annotations
@@ -20738,7 +20738,7 @@ n = 0 end
20738
20738
  end
20739
20739
  elsif @statement.relationship == :hasMembers
20740
20740
  @statement.object.arguments.each do |arg|
20741
- statement = BEL::Model::Statement.new(
20741
+ statement = BEL::Nanopub::Statement.new(
20742
20742
  @statement.subject, :hasMember, arg, @statement.comment
20743
20743
  )
20744
20744
  statement.annotations = @statement.annotations
@@ -20774,7 +20774,7 @@ n = 0 end
20774
20774
 
20775
20775
  if @statement.relationship == :hasComponents
20776
20776
  @statement.object.arguments.each do |arg|
20777
- statement = BEL::Model::Statement.new(
20777
+ statement = BEL::Nanopub::Statement.new(
20778
20778
  @statement.subject, :hasComponent, arg, @statement.comment
20779
20779
  )
20780
20780
  statement.annotations = @statement.annotations
@@ -20782,7 +20782,7 @@ n = 0 end
20782
20782
  end
20783
20783
  elsif @statement.relationship == :hasMembers
20784
20784
  @statement.object.arguments.each do |arg|
20785
- statement = BEL::Model::Statement.new(
20785
+ statement = BEL::Nanopub::Statement.new(
20786
20786
  @statement.subject, :hasMember, arg, @statement.comment
20787
20787
  )
20788
20788
  statement.annotations = @statement.annotations
@@ -20831,7 +20831,7 @@ n = 0 end
20831
20831
  end
20832
20832
  begin
20833
20833
 
20834
- nested = BEL::Model::Statement.new()
20834
+ nested = BEL::Nanopub::Statement.new()
20835
20835
  @statement_stack.last.object = nested
20836
20836
  @statement_stack.push nested
20837
20837
  end
@@ -20875,7 +20875,7 @@ n = 0 end
20875
20875
  @cmtbuffer << data[p].ord end
20876
20876
  begin
20877
20877
 
20878
- nested = BEL::Model::Statement.new()
20878
+ nested = BEL::Nanopub::Statement.new()
20879
20879
  @statement_stack.last.object = nested
20880
20880
  @statement_stack.push nested
20881
20881
  end
@@ -20916,7 +20916,7 @@ n = 0 end
20916
20916
 
20917
20917
  if @statement.relationship == :hasComponents
20918
20918
  @statement.object.arguments.each do |arg|
20919
- statement = BEL::Model::Statement.new(
20919
+ statement = BEL::Nanopub::Statement.new(
20920
20920
  @statement.subject, :hasComponent, arg, @statement.comment
20921
20921
  )
20922
20922
  statement.annotations = @statement.annotations
@@ -20924,7 +20924,7 @@ n = 0 end
20924
20924
  end
20925
20925
  elsif @statement.relationship == :hasMembers
20926
20926
  @statement.object.arguments.each do |arg|
20927
- statement = BEL::Model::Statement.new(
20927
+ statement = BEL::Nanopub::Statement.new(
20928
20928
  @statement.subject, :hasMember, arg, @statement.comment
20929
20929
  )
20930
20930
  statement.annotations = @statement.annotations
@@ -20961,7 +20961,7 @@ n = 0 end
20961
20961
 
20962
20962
  if @statement.relationship == :hasComponents
20963
20963
  @statement.object.arguments.each do |arg|
20964
- statement = BEL::Model::Statement.new(
20964
+ statement = BEL::Nanopub::Statement.new(
20965
20965
  @statement.subject, :hasComponent, arg, @statement.comment
20966
20966
  )
20967
20967
  statement.annotations = @statement.annotations
@@ -20969,7 +20969,7 @@ n = 0 end
20969
20969
  end
20970
20970
  elsif @statement.relationship == :hasMembers
20971
20971
  @statement.object.arguments.each do |arg|
20972
- statement = BEL::Model::Statement.new(
20972
+ statement = BEL::Nanopub::Statement.new(
20973
20973
  @statement.subject, :hasMember, arg, @statement.comment
20974
20974
  )
20975
20975
  statement.annotations = @statement.annotations
@@ -20995,7 +20995,7 @@ n = 0 end
20995
20995
  begin
20996
20996
 
20997
20997
  fx = @name.to_sym
20998
- @term_stack.push(BEL::Model::Term.new(fx, []))
20998
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
20999
20999
  @pfx = nil
21000
21000
  @pbuf = []
21001
21001
  end
@@ -21024,7 +21024,7 @@ n = 0 end
21024
21024
  p -= 1; end
21025
21025
  begin
21026
21026
 
21027
- @statement = BEL::Model::Statement.new()
21027
+ @statement = BEL::Nanopub::Statement.new()
21028
21028
  @statement_stack = [@statement]
21029
21029
  end
21030
21030
  begin
@@ -21048,7 +21048,7 @@ p -= 1; end
21048
21048
  begin
21049
21049
 
21050
21050
  fx = @name.to_sym
21051
- @term_stack.push(BEL::Model::Term.new(fx, []))
21051
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
21052
21052
  @pfx = nil
21053
21053
  @pbuf = []
21054
21054
  end
@@ -21106,7 +21106,7 @@ p -= 1; end
21106
21106
  p -= 1; end
21107
21107
  begin
21108
21108
 
21109
- @statement = BEL::Model::Statement.new()
21109
+ @statement = BEL::Nanopub::Statement.new()
21110
21110
  @statement_stack = [@statement]
21111
21111
  end
21112
21112
  begin
@@ -21134,7 +21134,7 @@ p -= 1; end
21134
21134
  p -= 1; end
21135
21135
  begin
21136
21136
 
21137
- @statement = BEL::Model::Statement.new()
21137
+ @statement = BEL::Nanopub::Statement.new()
21138
21138
  @statement_stack = [@statement]
21139
21139
  end
21140
21140
  begin
@@ -21162,7 +21162,7 @@ p -= 1; end
21162
21162
  p -= 1; end
21163
21163
  begin
21164
21164
 
21165
- @statement = BEL::Model::Statement.new()
21165
+ @statement = BEL::Nanopub::Statement.new()
21166
21166
  @statement_stack = [@statement]
21167
21167
  end
21168
21168
  begin
@@ -21190,7 +21190,7 @@ p -= 1; end
21190
21190
  p -= 1; end
21191
21191
  begin
21192
21192
 
21193
- @statement = BEL::Model::Statement.new()
21193
+ @statement = BEL::Nanopub::Statement.new()
21194
21194
  @statement_stack = [@statement]
21195
21195
  end
21196
21196
  begin
@@ -21218,7 +21218,7 @@ p -= 1; end
21218
21218
 
21219
21219
  if @statement.relationship == :hasComponents
21220
21220
  @statement.object.arguments.each do |arg|
21221
- statement = BEL::Model::Statement.new(
21221
+ statement = BEL::Nanopub::Statement.new(
21222
21222
  @statement.subject, :hasComponent, arg, @statement.comment
21223
21223
  )
21224
21224
  statement.annotations = @statement.annotations
@@ -21226,7 +21226,7 @@ p -= 1; end
21226
21226
  end
21227
21227
  elsif @statement.relationship == :hasMembers
21228
21228
  @statement.object.arguments.each do |arg|
21229
- statement = BEL::Model::Statement.new(
21229
+ statement = BEL::Nanopub::Statement.new(
21230
21230
  @statement.subject, :hasMember, arg, @statement.comment
21231
21231
  )
21232
21232
  statement.annotations = @statement.annotations
@@ -21262,7 +21262,7 @@ n = 0 end
21262
21262
 
21263
21263
  if @statement.relationship == :hasComponents
21264
21264
  @statement.object.arguments.each do |arg|
21265
- statement = BEL::Model::Statement.new(
21265
+ statement = BEL::Nanopub::Statement.new(
21266
21266
  @statement.subject, :hasComponent, arg, @statement.comment
21267
21267
  )
21268
21268
  statement.annotations = @statement.annotations
@@ -21270,7 +21270,7 @@ n = 0 end
21270
21270
  end
21271
21271
  elsif @statement.relationship == :hasMembers
21272
21272
  @statement.object.arguments.each do |arg|
21273
- statement = BEL::Model::Statement.new(
21273
+ statement = BEL::Nanopub::Statement.new(
21274
21274
  @statement.subject, :hasMember, arg, @statement.comment
21275
21275
  )
21276
21276
  statement.annotations = @statement.annotations
@@ -21332,7 +21332,7 @@ n = 0 end
21332
21332
  end
21333
21333
  begin
21334
21334
 
21335
- nested = BEL::Model::Statement.new()
21335
+ nested = BEL::Nanopub::Statement.new()
21336
21336
  @statement_stack.last.object = nested
21337
21337
  @statement_stack.push nested
21338
21338
  end
@@ -21368,7 +21368,7 @@ n = 0 end
21368
21368
 
21369
21369
  if @statement.relationship == :hasComponents
21370
21370
  @statement.object.arguments.each do |arg|
21371
- statement = BEL::Model::Statement.new(
21371
+ statement = BEL::Nanopub::Statement.new(
21372
21372
  @statement.subject, :hasComponent, arg, @statement.comment
21373
21373
  )
21374
21374
  statement.annotations = @statement.annotations
@@ -21376,7 +21376,7 @@ n = 0 end
21376
21376
  end
21377
21377
  elsif @statement.relationship == :hasMembers
21378
21378
  @statement.object.arguments.each do |arg|
21379
- statement = BEL::Model::Statement.new(
21379
+ statement = BEL::Nanopub::Statement.new(
21380
21380
  @statement.subject, :hasMember, arg, @statement.comment
21381
21381
  )
21382
21382
  statement.annotations = @statement.annotations
@@ -21409,7 +21409,7 @@ n = 0 end
21409
21409
 
21410
21410
  if @statement.relationship == :hasComponents
21411
21411
  @statement.object.arguments.each do |arg|
21412
- statement = BEL::Model::Statement.new(
21412
+ statement = BEL::Nanopub::Statement.new(
21413
21413
  @statement.subject, :hasComponent, arg, @statement.comment
21414
21414
  )
21415
21415
  statement.annotations = @statement.annotations
@@ -21417,7 +21417,7 @@ n = 0 end
21417
21417
  end
21418
21418
  elsif @statement.relationship == :hasMembers
21419
21419
  @statement.object.arguments.each do |arg|
21420
- statement = BEL::Model::Statement.new(
21420
+ statement = BEL::Nanopub::Statement.new(
21421
21421
  @statement.subject, :hasMember, arg, @statement.comment
21422
21422
  )
21423
21423
  statement.annotations = @statement.annotations
@@ -21460,7 +21460,7 @@ n = 0 end
21460
21460
 
21461
21461
  if @statement.relationship == :hasComponents
21462
21462
  @statement.object.arguments.each do |arg|
21463
- statement = BEL::Model::Statement.new(
21463
+ statement = BEL::Nanopub::Statement.new(
21464
21464
  @statement.subject, :hasComponent, arg, @statement.comment
21465
21465
  )
21466
21466
  statement.annotations = @statement.annotations
@@ -21468,7 +21468,7 @@ n = 0 end
21468
21468
  end
21469
21469
  elsif @statement.relationship == :hasMembers
21470
21470
  @statement.object.arguments.each do |arg|
21471
- statement = BEL::Model::Statement.new(
21471
+ statement = BEL::Nanopub::Statement.new(
21472
21472
  @statement.subject, :hasMember, arg, @statement.comment
21473
21473
  )
21474
21474
  statement.annotations = @statement.annotations
@@ -21488,7 +21488,7 @@ n = 0 end
21488
21488
  begin
21489
21489
 
21490
21490
  fx = @name.to_sym
21491
- @term_stack.push(BEL::Model::Term.new(fx, []))
21491
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
21492
21492
  @pfx = nil
21493
21493
  @pbuf = []
21494
21494
  end
@@ -21518,7 +21518,7 @@ n = 0 end
21518
21518
 
21519
21519
  if @statement.relationship == :hasComponents
21520
21520
  @statement.object.arguments.each do |arg|
21521
- statement = BEL::Model::Statement.new(
21521
+ statement = BEL::Nanopub::Statement.new(
21522
21522
  @statement.subject, :hasComponent, arg, @statement.comment
21523
21523
  )
21524
21524
  statement.annotations = @statement.annotations
@@ -21526,7 +21526,7 @@ n = 0 end
21526
21526
  end
21527
21527
  elsif @statement.relationship == :hasMembers
21528
21528
  @statement.object.arguments.each do |arg|
21529
- statement = BEL::Model::Statement.new(
21529
+ statement = BEL::Nanopub::Statement.new(
21530
21530
  @statement.subject, :hasMember, arg, @statement.comment
21531
21531
  )
21532
21532
  statement.annotations = @statement.annotations
@@ -21563,7 +21563,7 @@ n = 0 end
21563
21563
 
21564
21564
  if @statement.relationship == :hasComponents
21565
21565
  @statement.object.arguments.each do |arg|
21566
- statement = BEL::Model::Statement.new(
21566
+ statement = BEL::Nanopub::Statement.new(
21567
21567
  @statement.subject, :hasComponent, arg, @statement.comment
21568
21568
  )
21569
21569
  statement.annotations = @statement.annotations
@@ -21571,7 +21571,7 @@ n = 0 end
21571
21571
  end
21572
21572
  elsif @statement.relationship == :hasMembers
21573
21573
  @statement.object.arguments.each do |arg|
21574
- statement = BEL::Model::Statement.new(
21574
+ statement = BEL::Nanopub::Statement.new(
21575
21575
  @statement.subject, :hasMember, arg, @statement.comment
21576
21576
  )
21577
21577
  statement.annotations = @statement.annotations
@@ -21640,7 +21640,7 @@ n = 0 end
21640
21640
  p -= 1; end
21641
21641
  begin
21642
21642
 
21643
- @statement = BEL::Model::Statement.new()
21643
+ @statement = BEL::Nanopub::Statement.new()
21644
21644
  @statement_stack = [@statement]
21645
21645
  end
21646
21646
  begin
@@ -21666,7 +21666,7 @@ p -= 1; end
21666
21666
  begin
21667
21667
 
21668
21668
  fx = @name.to_sym
21669
- @term_stack.push(BEL::Model::Term.new(fx, []))
21669
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
21670
21670
  @pfx = nil
21671
21671
  @pbuf = []
21672
21672
  end
@@ -21726,7 +21726,7 @@ p -= 1; end
21726
21726
 
21727
21727
  if @statement.relationship == :hasComponents
21728
21728
  @statement.object.arguments.each do |arg|
21729
- statement = BEL::Model::Statement.new(
21729
+ statement = BEL::Nanopub::Statement.new(
21730
21730
  @statement.subject, :hasComponent, arg, @statement.comment
21731
21731
  )
21732
21732
  statement.annotations = @statement.annotations
@@ -21734,7 +21734,7 @@ p -= 1; end
21734
21734
  end
21735
21735
  elsif @statement.relationship == :hasMembers
21736
21736
  @statement.object.arguments.each do |arg|
21737
- statement = BEL::Model::Statement.new(
21737
+ statement = BEL::Nanopub::Statement.new(
21738
21738
  @statement.subject, :hasMember, arg, @statement.comment
21739
21739
  )
21740
21740
  statement.annotations = @statement.annotations
@@ -21775,7 +21775,7 @@ n = 0 end
21775
21775
 
21776
21776
  if @statement.relationship == :hasComponents
21777
21777
  @statement.object.arguments.each do |arg|
21778
- statement = BEL::Model::Statement.new(
21778
+ statement = BEL::Nanopub::Statement.new(
21779
21779
  @statement.subject, :hasComponent, arg, @statement.comment
21780
21780
  )
21781
21781
  statement.annotations = @statement.annotations
@@ -21783,7 +21783,7 @@ n = 0 end
21783
21783
  end
21784
21784
  elsif @statement.relationship == :hasMembers
21785
21785
  @statement.object.arguments.each do |arg|
21786
- statement = BEL::Model::Statement.new(
21786
+ statement = BEL::Nanopub::Statement.new(
21787
21787
  @statement.subject, :hasMember, arg, @statement.comment
21788
21788
  )
21789
21789
  statement.annotations = @statement.annotations
@@ -21818,12 +21818,12 @@ n = 0 end
21818
21818
 
21819
21819
  ns =
21820
21820
  if @pfx
21821
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
21821
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
21822
21822
  else
21823
21823
  nil
21824
21824
  end
21825
21825
 
21826
- param = BEL::Model::Parameter.new(ns, val)
21826
+ param = BEL::Nanopub::Parameter.new(ns, val)
21827
21827
  @term_stack.last << param
21828
21828
 
21829
21829
  yield param
@@ -21873,12 +21873,12 @@ n = 0 end
21873
21873
 
21874
21874
  ns =
21875
21875
  if @pfx
21876
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
21876
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
21877
21877
  else
21878
21878
  nil
21879
21879
  end
21880
21880
 
21881
- param = BEL::Model::Parameter.new(ns, val)
21881
+ param = BEL::Nanopub::Parameter.new(ns, val)
21882
21882
  @term_stack.last << param
21883
21883
 
21884
21884
  yield param
@@ -30799,7 +30799,7 @@ begin
30799
30799
 
30800
30800
  if @statement.relationship == :hasComponents
30801
30801
  @statement.object.arguments.each do |arg|
30802
- statement = BEL::Model::Statement.new(
30802
+ statement = BEL::Nanopub::Statement.new(
30803
30803
  @statement.subject, :hasComponent, arg, @statement.comment
30804
30804
  )
30805
30805
  statement.annotations = @statement.annotations
@@ -30807,7 +30807,7 @@ begin
30807
30807
  end
30808
30808
  elsif @statement.relationship == :hasMembers
30809
30809
  @statement.object.arguments.each do |arg|
30810
- statement = BEL::Model::Statement.new(
30810
+ statement = BEL::Nanopub::Statement.new(
30811
30811
  @statement.subject, :hasMember, arg, @statement.comment
30812
30812
  )
30813
30813
  statement.annotations = @statement.annotations
@@ -30860,12 +30860,12 @@ begin
30860
30860
 
30861
30861
  ns =
30862
30862
  if @pfx
30863
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
30863
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
30864
30864
  else
30865
30865
  nil
30866
30866
  end
30867
30867
 
30868
- param = BEL::Model::Parameter.new(ns, val)
30868
+ param = BEL::Nanopub::Parameter.new(ns, val)
30869
30869
  @term_stack.last << param
30870
30870
 
30871
30871
  yield param
@@ -30994,12 +30994,12 @@ begin
30994
30994
 
30995
30995
  ns =
30996
30996
  if @pfx
30997
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
30997
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
30998
30998
  else
30999
30999
  nil
31000
31000
  end
31001
31001
 
31002
- param = BEL::Model::Parameter.new(ns, val)
31002
+ param = BEL::Nanopub::Parameter.new(ns, val)
31003
31003
  @term_stack.last << param
31004
31004
 
31005
31005
  yield param
@@ -31185,7 +31185,7 @@ begin
31185
31185
 
31186
31186
  if @statement.relationship == :hasComponents
31187
31187
  @statement.object.arguments.each do |arg|
31188
- statement = BEL::Model::Statement.new(
31188
+ statement = BEL::Nanopub::Statement.new(
31189
31189
  @statement.subject, :hasComponent, arg, @statement.comment
31190
31190
  )
31191
31191
  statement.annotations = @statement.annotations
@@ -31193,7 +31193,7 @@ begin
31193
31193
  end
31194
31194
  elsif @statement.relationship == :hasMembers
31195
31195
  @statement.object.arguments.each do |arg|
31196
- statement = BEL::Model::Statement.new(
31196
+ statement = BEL::Nanopub::Statement.new(
31197
31197
  @statement.subject, :hasMember, arg, @statement.comment
31198
31198
  )
31199
31199
  statement.annotations = @statement.annotations
@@ -31214,7 +31214,7 @@ begin
31214
31214
  when 110 then
31215
31215
  begin
31216
31216
 
31217
- @statement = BEL::Model::Statement.new()
31217
+ @statement = BEL::Nanopub::Statement.new()
31218
31218
  @statement_stack = [@statement]
31219
31219
  end
31220
31220
  begin
@@ -31255,7 +31255,7 @@ p -= 1; begin
31255
31255
 
31256
31256
  if @statement.relationship == :hasComponents
31257
31257
  @statement.object.arguments.each do |arg|
31258
- statement = BEL::Model::Statement.new(
31258
+ statement = BEL::Nanopub::Statement.new(
31259
31259
  @statement.subject, :hasComponent, arg, @statement.comment
31260
31260
  )
31261
31261
  statement.annotations = @statement.annotations
@@ -31263,7 +31263,7 @@ p -= 1; begin
31263
31263
  end
31264
31264
  elsif @statement.relationship == :hasMembers
31265
31265
  @statement.object.arguments.each do |arg|
31266
- statement = BEL::Model::Statement.new(
31266
+ statement = BEL::Nanopub::Statement.new(
31267
31267
  @statement.subject, :hasMember, arg, @statement.comment
31268
31268
  )
31269
31269
  statement.annotations = @statement.annotations
@@ -31276,7 +31276,7 @@ p -= 1; begin
31276
31276
  when 63 then
31277
31277
  begin
31278
31278
 
31279
- nested = BEL::Model::Statement.new()
31279
+ nested = BEL::Nanopub::Statement.new()
31280
31280
  @statement_stack.last.object = nested
31281
31281
  @statement_stack.push nested
31282
31282
  end
@@ -31305,7 +31305,7 @@ p -= 1; begin
31305
31305
 
31306
31306
  if @statement.relationship == :hasComponents
31307
31307
  @statement.object.arguments.each do |arg|
31308
- statement = BEL::Model::Statement.new(
31308
+ statement = BEL::Nanopub::Statement.new(
31309
31309
  @statement.subject, :hasComponent, arg, @statement.comment
31310
31310
  )
31311
31311
  statement.annotations = @statement.annotations
@@ -31313,7 +31313,7 @@ p -= 1; begin
31313
31313
  end
31314
31314
  elsif @statement.relationship == :hasMembers
31315
31315
  @statement.object.arguments.each do |arg|
31316
- statement = BEL::Model::Statement.new(
31316
+ statement = BEL::Nanopub::Statement.new(
31317
31317
  @statement.subject, :hasMember, arg, @statement.comment
31318
31318
  )
31319
31319
  statement.annotations = @statement.annotations
@@ -31402,7 +31402,7 @@ p -= 1; begin
31402
31402
  begin
31403
31403
 
31404
31404
  fx = @name.to_sym
31405
- @term_stack.push(BEL::Model::Term.new(fx, []))
31405
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
31406
31406
  @pfx = nil
31407
31407
  @pbuf = []
31408
31408
  end
@@ -31426,12 +31426,12 @@ p -= 1; begin
31426
31426
 
31427
31427
  ns =
31428
31428
  if @pfx
31429
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
31429
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
31430
31430
  else
31431
31431
  nil
31432
31432
  end
31433
31433
 
31434
- param = BEL::Model::Parameter.new(ns, val)
31434
+ param = BEL::Nanopub::Parameter.new(ns, val)
31435
31435
  @term_stack.last << param
31436
31436
 
31437
31437
  yield param
@@ -31537,7 +31537,7 @@ n = 0 end
31537
31537
  begin
31538
31538
 
31539
31539
  fx = @name.to_sym
31540
- @term_stack.push(BEL::Model::Term.new(fx, []))
31540
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
31541
31541
  @pfx = nil
31542
31542
  @pbuf = []
31543
31543
  end
@@ -31727,7 +31727,7 @@ n = 0 end
31727
31727
 
31728
31728
  if @statement.relationship == :hasComponents
31729
31729
  @statement.object.arguments.each do |arg|
31730
- statement = BEL::Model::Statement.new(
31730
+ statement = BEL::Nanopub::Statement.new(
31731
31731
  @statement.subject, :hasComponent, arg, @statement.comment
31732
31732
  )
31733
31733
  statement.annotations = @statement.annotations
@@ -31735,7 +31735,7 @@ n = 0 end
31735
31735
  end
31736
31736
  elsif @statement.relationship == :hasMembers
31737
31737
  @statement.object.arguments.each do |arg|
31738
- statement = BEL::Model::Statement.new(
31738
+ statement = BEL::Nanopub::Statement.new(
31739
31739
  @statement.subject, :hasMember, arg, @statement.comment
31740
31740
  )
31741
31741
  statement.annotations = @statement.annotations
@@ -31771,7 +31771,7 @@ n = 0 end
31771
31771
 
31772
31772
  if @statement.relationship == :hasComponents
31773
31773
  @statement.object.arguments.each do |arg|
31774
- statement = BEL::Model::Statement.new(
31774
+ statement = BEL::Nanopub::Statement.new(
31775
31775
  @statement.subject, :hasComponent, arg, @statement.comment
31776
31776
  )
31777
31777
  statement.annotations = @statement.annotations
@@ -31779,7 +31779,7 @@ n = 0 end
31779
31779
  end
31780
31780
  elsif @statement.relationship == :hasMembers
31781
31781
  @statement.object.arguments.each do |arg|
31782
- statement = BEL::Model::Statement.new(
31782
+ statement = BEL::Nanopub::Statement.new(
31783
31783
  @statement.subject, :hasMember, arg, @statement.comment
31784
31784
  )
31785
31785
  statement.annotations = @statement.annotations
@@ -31828,7 +31828,7 @@ n = 0 end
31828
31828
  end
31829
31829
  begin
31830
31830
 
31831
- nested = BEL::Model::Statement.new()
31831
+ nested = BEL::Nanopub::Statement.new()
31832
31832
  @statement_stack.last.object = nested
31833
31833
  @statement_stack.push nested
31834
31834
  end
@@ -31872,7 +31872,7 @@ n = 0 end
31872
31872
  @cmtbuffer << data[p].ord end
31873
31873
  begin
31874
31874
 
31875
- nested = BEL::Model::Statement.new()
31875
+ nested = BEL::Nanopub::Statement.new()
31876
31876
  @statement_stack.last.object = nested
31877
31877
  @statement_stack.push nested
31878
31878
  end
@@ -31913,7 +31913,7 @@ n = 0 end
31913
31913
 
31914
31914
  if @statement.relationship == :hasComponents
31915
31915
  @statement.object.arguments.each do |arg|
31916
- statement = BEL::Model::Statement.new(
31916
+ statement = BEL::Nanopub::Statement.new(
31917
31917
  @statement.subject, :hasComponent, arg, @statement.comment
31918
31918
  )
31919
31919
  statement.annotations = @statement.annotations
@@ -31921,7 +31921,7 @@ n = 0 end
31921
31921
  end
31922
31922
  elsif @statement.relationship == :hasMembers
31923
31923
  @statement.object.arguments.each do |arg|
31924
- statement = BEL::Model::Statement.new(
31924
+ statement = BEL::Nanopub::Statement.new(
31925
31925
  @statement.subject, :hasMember, arg, @statement.comment
31926
31926
  )
31927
31927
  statement.annotations = @statement.annotations
@@ -31958,7 +31958,7 @@ n = 0 end
31958
31958
 
31959
31959
  if @statement.relationship == :hasComponents
31960
31960
  @statement.object.arguments.each do |arg|
31961
- statement = BEL::Model::Statement.new(
31961
+ statement = BEL::Nanopub::Statement.new(
31962
31962
  @statement.subject, :hasComponent, arg, @statement.comment
31963
31963
  )
31964
31964
  statement.annotations = @statement.annotations
@@ -31966,7 +31966,7 @@ n = 0 end
31966
31966
  end
31967
31967
  elsif @statement.relationship == :hasMembers
31968
31968
  @statement.object.arguments.each do |arg|
31969
- statement = BEL::Model::Statement.new(
31969
+ statement = BEL::Nanopub::Statement.new(
31970
31970
  @statement.subject, :hasMember, arg, @statement.comment
31971
31971
  )
31972
31972
  statement.annotations = @statement.annotations
@@ -31992,7 +31992,7 @@ n = 0 end
31992
31992
  begin
31993
31993
 
31994
31994
  fx = @name.to_sym
31995
- @term_stack.push(BEL::Model::Term.new(fx, []))
31995
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
31996
31996
  @pfx = nil
31997
31997
  @pbuf = []
31998
31998
  end
@@ -32021,7 +32021,7 @@ n = 0 end
32021
32021
  p -= 1; end
32022
32022
  begin
32023
32023
 
32024
- @statement = BEL::Model::Statement.new()
32024
+ @statement = BEL::Nanopub::Statement.new()
32025
32025
  @statement_stack = [@statement]
32026
32026
  end
32027
32027
  begin
@@ -32045,7 +32045,7 @@ p -= 1; end
32045
32045
  begin
32046
32046
 
32047
32047
  fx = @name.to_sym
32048
- @term_stack.push(BEL::Model::Term.new(fx, []))
32048
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
32049
32049
  @pfx = nil
32050
32050
  @pbuf = []
32051
32051
  end
@@ -32103,7 +32103,7 @@ p -= 1; end
32103
32103
  p -= 1; end
32104
32104
  begin
32105
32105
 
32106
- @statement = BEL::Model::Statement.new()
32106
+ @statement = BEL::Nanopub::Statement.new()
32107
32107
  @statement_stack = [@statement]
32108
32108
  end
32109
32109
  begin
@@ -32131,7 +32131,7 @@ p -= 1; end
32131
32131
  p -= 1; end
32132
32132
  begin
32133
32133
 
32134
- @statement = BEL::Model::Statement.new()
32134
+ @statement = BEL::Nanopub::Statement.new()
32135
32135
  @statement_stack = [@statement]
32136
32136
  end
32137
32137
  begin
@@ -32159,7 +32159,7 @@ p -= 1; end
32159
32159
  p -= 1; end
32160
32160
  begin
32161
32161
 
32162
- @statement = BEL::Model::Statement.new()
32162
+ @statement = BEL::Nanopub::Statement.new()
32163
32163
  @statement_stack = [@statement]
32164
32164
  end
32165
32165
  begin
@@ -32187,7 +32187,7 @@ p -= 1; end
32187
32187
  p -= 1; end
32188
32188
  begin
32189
32189
 
32190
- @statement = BEL::Model::Statement.new()
32190
+ @statement = BEL::Nanopub::Statement.new()
32191
32191
  @statement_stack = [@statement]
32192
32192
  end
32193
32193
  begin
@@ -32215,7 +32215,7 @@ p -= 1; end
32215
32215
 
32216
32216
  if @statement.relationship == :hasComponents
32217
32217
  @statement.object.arguments.each do |arg|
32218
- statement = BEL::Model::Statement.new(
32218
+ statement = BEL::Nanopub::Statement.new(
32219
32219
  @statement.subject, :hasComponent, arg, @statement.comment
32220
32220
  )
32221
32221
  statement.annotations = @statement.annotations
@@ -32223,7 +32223,7 @@ p -= 1; end
32223
32223
  end
32224
32224
  elsif @statement.relationship == :hasMembers
32225
32225
  @statement.object.arguments.each do |arg|
32226
- statement = BEL::Model::Statement.new(
32226
+ statement = BEL::Nanopub::Statement.new(
32227
32227
  @statement.subject, :hasMember, arg, @statement.comment
32228
32228
  )
32229
32229
  statement.annotations = @statement.annotations
@@ -32259,7 +32259,7 @@ n = 0 end
32259
32259
 
32260
32260
  if @statement.relationship == :hasComponents
32261
32261
  @statement.object.arguments.each do |arg|
32262
- statement = BEL::Model::Statement.new(
32262
+ statement = BEL::Nanopub::Statement.new(
32263
32263
  @statement.subject, :hasComponent, arg, @statement.comment
32264
32264
  )
32265
32265
  statement.annotations = @statement.annotations
@@ -32267,7 +32267,7 @@ n = 0 end
32267
32267
  end
32268
32268
  elsif @statement.relationship == :hasMembers
32269
32269
  @statement.object.arguments.each do |arg|
32270
- statement = BEL::Model::Statement.new(
32270
+ statement = BEL::Nanopub::Statement.new(
32271
32271
  @statement.subject, :hasMember, arg, @statement.comment
32272
32272
  )
32273
32273
  statement.annotations = @statement.annotations
@@ -32329,7 +32329,7 @@ n = 0 end
32329
32329
  end
32330
32330
  begin
32331
32331
 
32332
- nested = BEL::Model::Statement.new()
32332
+ nested = BEL::Nanopub::Statement.new()
32333
32333
  @statement_stack.last.object = nested
32334
32334
  @statement_stack.push nested
32335
32335
  end
@@ -32365,7 +32365,7 @@ n = 0 end
32365
32365
 
32366
32366
  if @statement.relationship == :hasComponents
32367
32367
  @statement.object.arguments.each do |arg|
32368
- statement = BEL::Model::Statement.new(
32368
+ statement = BEL::Nanopub::Statement.new(
32369
32369
  @statement.subject, :hasComponent, arg, @statement.comment
32370
32370
  )
32371
32371
  statement.annotations = @statement.annotations
@@ -32373,7 +32373,7 @@ n = 0 end
32373
32373
  end
32374
32374
  elsif @statement.relationship == :hasMembers
32375
32375
  @statement.object.arguments.each do |arg|
32376
- statement = BEL::Model::Statement.new(
32376
+ statement = BEL::Nanopub::Statement.new(
32377
32377
  @statement.subject, :hasMember, arg, @statement.comment
32378
32378
  )
32379
32379
  statement.annotations = @statement.annotations
@@ -32406,7 +32406,7 @@ n = 0 end
32406
32406
 
32407
32407
  if @statement.relationship == :hasComponents
32408
32408
  @statement.object.arguments.each do |arg|
32409
- statement = BEL::Model::Statement.new(
32409
+ statement = BEL::Nanopub::Statement.new(
32410
32410
  @statement.subject, :hasComponent, arg, @statement.comment
32411
32411
  )
32412
32412
  statement.annotations = @statement.annotations
@@ -32414,7 +32414,7 @@ n = 0 end
32414
32414
  end
32415
32415
  elsif @statement.relationship == :hasMembers
32416
32416
  @statement.object.arguments.each do |arg|
32417
- statement = BEL::Model::Statement.new(
32417
+ statement = BEL::Nanopub::Statement.new(
32418
32418
  @statement.subject, :hasMember, arg, @statement.comment
32419
32419
  )
32420
32420
  statement.annotations = @statement.annotations
@@ -32457,7 +32457,7 @@ n = 0 end
32457
32457
 
32458
32458
  if @statement.relationship == :hasComponents
32459
32459
  @statement.object.arguments.each do |arg|
32460
- statement = BEL::Model::Statement.new(
32460
+ statement = BEL::Nanopub::Statement.new(
32461
32461
  @statement.subject, :hasComponent, arg, @statement.comment
32462
32462
  )
32463
32463
  statement.annotations = @statement.annotations
@@ -32465,7 +32465,7 @@ n = 0 end
32465
32465
  end
32466
32466
  elsif @statement.relationship == :hasMembers
32467
32467
  @statement.object.arguments.each do |arg|
32468
- statement = BEL::Model::Statement.new(
32468
+ statement = BEL::Nanopub::Statement.new(
32469
32469
  @statement.subject, :hasMember, arg, @statement.comment
32470
32470
  )
32471
32471
  statement.annotations = @statement.annotations
@@ -32485,7 +32485,7 @@ n = 0 end
32485
32485
  begin
32486
32486
 
32487
32487
  fx = @name.to_sym
32488
- @term_stack.push(BEL::Model::Term.new(fx, []))
32488
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
32489
32489
  @pfx = nil
32490
32490
  @pbuf = []
32491
32491
  end
@@ -32515,7 +32515,7 @@ n = 0 end
32515
32515
 
32516
32516
  if @statement.relationship == :hasComponents
32517
32517
  @statement.object.arguments.each do |arg|
32518
- statement = BEL::Model::Statement.new(
32518
+ statement = BEL::Nanopub::Statement.new(
32519
32519
  @statement.subject, :hasComponent, arg, @statement.comment
32520
32520
  )
32521
32521
  statement.annotations = @statement.annotations
@@ -32523,7 +32523,7 @@ n = 0 end
32523
32523
  end
32524
32524
  elsif @statement.relationship == :hasMembers
32525
32525
  @statement.object.arguments.each do |arg|
32526
- statement = BEL::Model::Statement.new(
32526
+ statement = BEL::Nanopub::Statement.new(
32527
32527
  @statement.subject, :hasMember, arg, @statement.comment
32528
32528
  )
32529
32529
  statement.annotations = @statement.annotations
@@ -32560,7 +32560,7 @@ n = 0 end
32560
32560
 
32561
32561
  if @statement.relationship == :hasComponents
32562
32562
  @statement.object.arguments.each do |arg|
32563
- statement = BEL::Model::Statement.new(
32563
+ statement = BEL::Nanopub::Statement.new(
32564
32564
  @statement.subject, :hasComponent, arg, @statement.comment
32565
32565
  )
32566
32566
  statement.annotations = @statement.annotations
@@ -32568,7 +32568,7 @@ n = 0 end
32568
32568
  end
32569
32569
  elsif @statement.relationship == :hasMembers
32570
32570
  @statement.object.arguments.each do |arg|
32571
- statement = BEL::Model::Statement.new(
32571
+ statement = BEL::Nanopub::Statement.new(
32572
32572
  @statement.subject, :hasMember, arg, @statement.comment
32573
32573
  )
32574
32574
  statement.annotations = @statement.annotations
@@ -32637,7 +32637,7 @@ n = 0 end
32637
32637
  p -= 1; end
32638
32638
  begin
32639
32639
 
32640
- @statement = BEL::Model::Statement.new()
32640
+ @statement = BEL::Nanopub::Statement.new()
32641
32641
  @statement_stack = [@statement]
32642
32642
  end
32643
32643
  begin
@@ -32663,7 +32663,7 @@ p -= 1; end
32663
32663
  begin
32664
32664
 
32665
32665
  fx = @name.to_sym
32666
- @term_stack.push(BEL::Model::Term.new(fx, []))
32666
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
32667
32667
  @pfx = nil
32668
32668
  @pbuf = []
32669
32669
  end
@@ -32723,7 +32723,7 @@ p -= 1; end
32723
32723
 
32724
32724
  if @statement.relationship == :hasComponents
32725
32725
  @statement.object.arguments.each do |arg|
32726
- statement = BEL::Model::Statement.new(
32726
+ statement = BEL::Nanopub::Statement.new(
32727
32727
  @statement.subject, :hasComponent, arg, @statement.comment
32728
32728
  )
32729
32729
  statement.annotations = @statement.annotations
@@ -32731,7 +32731,7 @@ p -= 1; end
32731
32731
  end
32732
32732
  elsif @statement.relationship == :hasMembers
32733
32733
  @statement.object.arguments.each do |arg|
32734
- statement = BEL::Model::Statement.new(
32734
+ statement = BEL::Nanopub::Statement.new(
32735
32735
  @statement.subject, :hasMember, arg, @statement.comment
32736
32736
  )
32737
32737
  statement.annotations = @statement.annotations
@@ -32772,7 +32772,7 @@ n = 0 end
32772
32772
 
32773
32773
  if @statement.relationship == :hasComponents
32774
32774
  @statement.object.arguments.each do |arg|
32775
- statement = BEL::Model::Statement.new(
32775
+ statement = BEL::Nanopub::Statement.new(
32776
32776
  @statement.subject, :hasComponent, arg, @statement.comment
32777
32777
  )
32778
32778
  statement.annotations = @statement.annotations
@@ -32780,7 +32780,7 @@ n = 0 end
32780
32780
  end
32781
32781
  elsif @statement.relationship == :hasMembers
32782
32782
  @statement.object.arguments.each do |arg|
32783
- statement = BEL::Model::Statement.new(
32783
+ statement = BEL::Nanopub::Statement.new(
32784
32784
  @statement.subject, :hasMember, arg, @statement.comment
32785
32785
  )
32786
32786
  statement.annotations = @statement.annotations
@@ -32815,12 +32815,12 @@ n = 0 end
32815
32815
 
32816
32816
  ns =
32817
32817
  if @pfx
32818
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
32818
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
32819
32819
  else
32820
32820
  nil
32821
32821
  end
32822
32822
 
32823
- param = BEL::Model::Parameter.new(ns, val)
32823
+ param = BEL::Nanopub::Parameter.new(ns, val)
32824
32824
  @term_stack.last << param
32825
32825
 
32826
32826
  yield param
@@ -32870,12 +32870,12 @@ n = 0 end
32870
32870
 
32871
32871
  ns =
32872
32872
  if @pfx
32873
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
32873
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
32874
32874
  else
32875
32875
  nil
32876
32876
  end
32877
32877
 
32878
- param = BEL::Model::Parameter.new(ns, val)
32878
+ param = BEL::Nanopub::Parameter.new(ns, val)
32879
32879
  @term_stack.last << param
32880
32880
 
32881
32881
  yield param
@@ -41796,7 +41796,7 @@ begin
41796
41796
 
41797
41797
  if @statement.relationship == :hasComponents
41798
41798
  @statement.object.arguments.each do |arg|
41799
- statement = BEL::Model::Statement.new(
41799
+ statement = BEL::Nanopub::Statement.new(
41800
41800
  @statement.subject, :hasComponent, arg, @statement.comment
41801
41801
  )
41802
41802
  statement.annotations = @statement.annotations
@@ -41804,7 +41804,7 @@ begin
41804
41804
  end
41805
41805
  elsif @statement.relationship == :hasMembers
41806
41806
  @statement.object.arguments.each do |arg|
41807
- statement = BEL::Model::Statement.new(
41807
+ statement = BEL::Nanopub::Statement.new(
41808
41808
  @statement.subject, :hasMember, arg, @statement.comment
41809
41809
  )
41810
41810
  statement.annotations = @statement.annotations
@@ -41857,12 +41857,12 @@ begin
41857
41857
 
41858
41858
  ns =
41859
41859
  if @pfx
41860
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
41860
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
41861
41861
  else
41862
41862
  nil
41863
41863
  end
41864
41864
 
41865
- param = BEL::Model::Parameter.new(ns, val)
41865
+ param = BEL::Nanopub::Parameter.new(ns, val)
41866
41866
  @term_stack.last << param
41867
41867
 
41868
41868
  yield param
@@ -41991,12 +41991,12 @@ begin
41991
41991
 
41992
41992
  ns =
41993
41993
  if @pfx
41994
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
41994
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
41995
41995
  else
41996
41996
  nil
41997
41997
  end
41998
41998
 
41999
- param = BEL::Model::Parameter.new(ns, val)
41999
+ param = BEL::Nanopub::Parameter.new(ns, val)
42000
42000
  @term_stack.last << param
42001
42001
 
42002
42002
  yield param
@@ -42182,7 +42182,7 @@ begin
42182
42182
 
42183
42183
  if @statement.relationship == :hasComponents
42184
42184
  @statement.object.arguments.each do |arg|
42185
- statement = BEL::Model::Statement.new(
42185
+ statement = BEL::Nanopub::Statement.new(
42186
42186
  @statement.subject, :hasComponent, arg, @statement.comment
42187
42187
  )
42188
42188
  statement.annotations = @statement.annotations
@@ -42190,7 +42190,7 @@ begin
42190
42190
  end
42191
42191
  elsif @statement.relationship == :hasMembers
42192
42192
  @statement.object.arguments.each do |arg|
42193
- statement = BEL::Model::Statement.new(
42193
+ statement = BEL::Nanopub::Statement.new(
42194
42194
  @statement.subject, :hasMember, arg, @statement.comment
42195
42195
  )
42196
42196
  statement.annotations = @statement.annotations
@@ -42211,7 +42211,7 @@ begin
42211
42211
  when 110 then
42212
42212
  begin
42213
42213
 
42214
- @statement = BEL::Model::Statement.new()
42214
+ @statement = BEL::Nanopub::Statement.new()
42215
42215
  @statement_stack = [@statement]
42216
42216
  end
42217
42217
  begin
@@ -42252,7 +42252,7 @@ p -= 1; begin
42252
42252
 
42253
42253
  if @statement.relationship == :hasComponents
42254
42254
  @statement.object.arguments.each do |arg|
42255
- statement = BEL::Model::Statement.new(
42255
+ statement = BEL::Nanopub::Statement.new(
42256
42256
  @statement.subject, :hasComponent, arg, @statement.comment
42257
42257
  )
42258
42258
  statement.annotations = @statement.annotations
@@ -42260,7 +42260,7 @@ p -= 1; begin
42260
42260
  end
42261
42261
  elsif @statement.relationship == :hasMembers
42262
42262
  @statement.object.arguments.each do |arg|
42263
- statement = BEL::Model::Statement.new(
42263
+ statement = BEL::Nanopub::Statement.new(
42264
42264
  @statement.subject, :hasMember, arg, @statement.comment
42265
42265
  )
42266
42266
  statement.annotations = @statement.annotations
@@ -42273,7 +42273,7 @@ p -= 1; begin
42273
42273
  when 63 then
42274
42274
  begin
42275
42275
 
42276
- nested = BEL::Model::Statement.new()
42276
+ nested = BEL::Nanopub::Statement.new()
42277
42277
  @statement_stack.last.object = nested
42278
42278
  @statement_stack.push nested
42279
42279
  end
@@ -42302,7 +42302,7 @@ p -= 1; begin
42302
42302
 
42303
42303
  if @statement.relationship == :hasComponents
42304
42304
  @statement.object.arguments.each do |arg|
42305
- statement = BEL::Model::Statement.new(
42305
+ statement = BEL::Nanopub::Statement.new(
42306
42306
  @statement.subject, :hasComponent, arg, @statement.comment
42307
42307
  )
42308
42308
  statement.annotations = @statement.annotations
@@ -42310,7 +42310,7 @@ p -= 1; begin
42310
42310
  end
42311
42311
  elsif @statement.relationship == :hasMembers
42312
42312
  @statement.object.arguments.each do |arg|
42313
- statement = BEL::Model::Statement.new(
42313
+ statement = BEL::Nanopub::Statement.new(
42314
42314
  @statement.subject, :hasMember, arg, @statement.comment
42315
42315
  )
42316
42316
  statement.annotations = @statement.annotations
@@ -42399,7 +42399,7 @@ p -= 1; begin
42399
42399
  begin
42400
42400
 
42401
42401
  fx = @name.to_sym
42402
- @term_stack.push(BEL::Model::Term.new(fx, []))
42402
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
42403
42403
  @pfx = nil
42404
42404
  @pbuf = []
42405
42405
  end
@@ -42423,12 +42423,12 @@ p -= 1; begin
42423
42423
 
42424
42424
  ns =
42425
42425
  if @pfx
42426
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
42426
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
42427
42427
  else
42428
42428
  nil
42429
42429
  end
42430
42430
 
42431
- param = BEL::Model::Parameter.new(ns, val)
42431
+ param = BEL::Nanopub::Parameter.new(ns, val)
42432
42432
  @term_stack.last << param
42433
42433
 
42434
42434
  yield param
@@ -42534,7 +42534,7 @@ n = 0 end
42534
42534
  begin
42535
42535
 
42536
42536
  fx = @name.to_sym
42537
- @term_stack.push(BEL::Model::Term.new(fx, []))
42537
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
42538
42538
  @pfx = nil
42539
42539
  @pbuf = []
42540
42540
  end
@@ -42724,7 +42724,7 @@ n = 0 end
42724
42724
 
42725
42725
  if @statement.relationship == :hasComponents
42726
42726
  @statement.object.arguments.each do |arg|
42727
- statement = BEL::Model::Statement.new(
42727
+ statement = BEL::Nanopub::Statement.new(
42728
42728
  @statement.subject, :hasComponent, arg, @statement.comment
42729
42729
  )
42730
42730
  statement.annotations = @statement.annotations
@@ -42732,7 +42732,7 @@ n = 0 end
42732
42732
  end
42733
42733
  elsif @statement.relationship == :hasMembers
42734
42734
  @statement.object.arguments.each do |arg|
42735
- statement = BEL::Model::Statement.new(
42735
+ statement = BEL::Nanopub::Statement.new(
42736
42736
  @statement.subject, :hasMember, arg, @statement.comment
42737
42737
  )
42738
42738
  statement.annotations = @statement.annotations
@@ -42768,7 +42768,7 @@ n = 0 end
42768
42768
 
42769
42769
  if @statement.relationship == :hasComponents
42770
42770
  @statement.object.arguments.each do |arg|
42771
- statement = BEL::Model::Statement.new(
42771
+ statement = BEL::Nanopub::Statement.new(
42772
42772
  @statement.subject, :hasComponent, arg, @statement.comment
42773
42773
  )
42774
42774
  statement.annotations = @statement.annotations
@@ -42776,7 +42776,7 @@ n = 0 end
42776
42776
  end
42777
42777
  elsif @statement.relationship == :hasMembers
42778
42778
  @statement.object.arguments.each do |arg|
42779
- statement = BEL::Model::Statement.new(
42779
+ statement = BEL::Nanopub::Statement.new(
42780
42780
  @statement.subject, :hasMember, arg, @statement.comment
42781
42781
  )
42782
42782
  statement.annotations = @statement.annotations
@@ -42825,7 +42825,7 @@ n = 0 end
42825
42825
  end
42826
42826
  begin
42827
42827
 
42828
- nested = BEL::Model::Statement.new()
42828
+ nested = BEL::Nanopub::Statement.new()
42829
42829
  @statement_stack.last.object = nested
42830
42830
  @statement_stack.push nested
42831
42831
  end
@@ -42869,7 +42869,7 @@ n = 0 end
42869
42869
  @cmtbuffer << data[p].ord end
42870
42870
  begin
42871
42871
 
42872
- nested = BEL::Model::Statement.new()
42872
+ nested = BEL::Nanopub::Statement.new()
42873
42873
  @statement_stack.last.object = nested
42874
42874
  @statement_stack.push nested
42875
42875
  end
@@ -42910,7 +42910,7 @@ n = 0 end
42910
42910
 
42911
42911
  if @statement.relationship == :hasComponents
42912
42912
  @statement.object.arguments.each do |arg|
42913
- statement = BEL::Model::Statement.new(
42913
+ statement = BEL::Nanopub::Statement.new(
42914
42914
  @statement.subject, :hasComponent, arg, @statement.comment
42915
42915
  )
42916
42916
  statement.annotations = @statement.annotations
@@ -42918,7 +42918,7 @@ n = 0 end
42918
42918
  end
42919
42919
  elsif @statement.relationship == :hasMembers
42920
42920
  @statement.object.arguments.each do |arg|
42921
- statement = BEL::Model::Statement.new(
42921
+ statement = BEL::Nanopub::Statement.new(
42922
42922
  @statement.subject, :hasMember, arg, @statement.comment
42923
42923
  )
42924
42924
  statement.annotations = @statement.annotations
@@ -42955,7 +42955,7 @@ n = 0 end
42955
42955
 
42956
42956
  if @statement.relationship == :hasComponents
42957
42957
  @statement.object.arguments.each do |arg|
42958
- statement = BEL::Model::Statement.new(
42958
+ statement = BEL::Nanopub::Statement.new(
42959
42959
  @statement.subject, :hasComponent, arg, @statement.comment
42960
42960
  )
42961
42961
  statement.annotations = @statement.annotations
@@ -42963,7 +42963,7 @@ n = 0 end
42963
42963
  end
42964
42964
  elsif @statement.relationship == :hasMembers
42965
42965
  @statement.object.arguments.each do |arg|
42966
- statement = BEL::Model::Statement.new(
42966
+ statement = BEL::Nanopub::Statement.new(
42967
42967
  @statement.subject, :hasMember, arg, @statement.comment
42968
42968
  )
42969
42969
  statement.annotations = @statement.annotations
@@ -42989,7 +42989,7 @@ n = 0 end
42989
42989
  begin
42990
42990
 
42991
42991
  fx = @name.to_sym
42992
- @term_stack.push(BEL::Model::Term.new(fx, []))
42992
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
42993
42993
  @pfx = nil
42994
42994
  @pbuf = []
42995
42995
  end
@@ -43018,7 +43018,7 @@ n = 0 end
43018
43018
  p -= 1; end
43019
43019
  begin
43020
43020
 
43021
- @statement = BEL::Model::Statement.new()
43021
+ @statement = BEL::Nanopub::Statement.new()
43022
43022
  @statement_stack = [@statement]
43023
43023
  end
43024
43024
  begin
@@ -43042,7 +43042,7 @@ p -= 1; end
43042
43042
  begin
43043
43043
 
43044
43044
  fx = @name.to_sym
43045
- @term_stack.push(BEL::Model::Term.new(fx, []))
43045
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
43046
43046
  @pfx = nil
43047
43047
  @pbuf = []
43048
43048
  end
@@ -43100,7 +43100,7 @@ p -= 1; end
43100
43100
  p -= 1; end
43101
43101
  begin
43102
43102
 
43103
- @statement = BEL::Model::Statement.new()
43103
+ @statement = BEL::Nanopub::Statement.new()
43104
43104
  @statement_stack = [@statement]
43105
43105
  end
43106
43106
  begin
@@ -43128,7 +43128,7 @@ p -= 1; end
43128
43128
  p -= 1; end
43129
43129
  begin
43130
43130
 
43131
- @statement = BEL::Model::Statement.new()
43131
+ @statement = BEL::Nanopub::Statement.new()
43132
43132
  @statement_stack = [@statement]
43133
43133
  end
43134
43134
  begin
@@ -43156,7 +43156,7 @@ p -= 1; end
43156
43156
  p -= 1; end
43157
43157
  begin
43158
43158
 
43159
- @statement = BEL::Model::Statement.new()
43159
+ @statement = BEL::Nanopub::Statement.new()
43160
43160
  @statement_stack = [@statement]
43161
43161
  end
43162
43162
  begin
@@ -43184,7 +43184,7 @@ p -= 1; end
43184
43184
  p -= 1; end
43185
43185
  begin
43186
43186
 
43187
- @statement = BEL::Model::Statement.new()
43187
+ @statement = BEL::Nanopub::Statement.new()
43188
43188
  @statement_stack = [@statement]
43189
43189
  end
43190
43190
  begin
@@ -43212,7 +43212,7 @@ p -= 1; end
43212
43212
 
43213
43213
  if @statement.relationship == :hasComponents
43214
43214
  @statement.object.arguments.each do |arg|
43215
- statement = BEL::Model::Statement.new(
43215
+ statement = BEL::Nanopub::Statement.new(
43216
43216
  @statement.subject, :hasComponent, arg, @statement.comment
43217
43217
  )
43218
43218
  statement.annotations = @statement.annotations
@@ -43220,7 +43220,7 @@ p -= 1; end
43220
43220
  end
43221
43221
  elsif @statement.relationship == :hasMembers
43222
43222
  @statement.object.arguments.each do |arg|
43223
- statement = BEL::Model::Statement.new(
43223
+ statement = BEL::Nanopub::Statement.new(
43224
43224
  @statement.subject, :hasMember, arg, @statement.comment
43225
43225
  )
43226
43226
  statement.annotations = @statement.annotations
@@ -43256,7 +43256,7 @@ n = 0 end
43256
43256
 
43257
43257
  if @statement.relationship == :hasComponents
43258
43258
  @statement.object.arguments.each do |arg|
43259
- statement = BEL::Model::Statement.new(
43259
+ statement = BEL::Nanopub::Statement.new(
43260
43260
  @statement.subject, :hasComponent, arg, @statement.comment
43261
43261
  )
43262
43262
  statement.annotations = @statement.annotations
@@ -43264,7 +43264,7 @@ n = 0 end
43264
43264
  end
43265
43265
  elsif @statement.relationship == :hasMembers
43266
43266
  @statement.object.arguments.each do |arg|
43267
- statement = BEL::Model::Statement.new(
43267
+ statement = BEL::Nanopub::Statement.new(
43268
43268
  @statement.subject, :hasMember, arg, @statement.comment
43269
43269
  )
43270
43270
  statement.annotations = @statement.annotations
@@ -43326,7 +43326,7 @@ n = 0 end
43326
43326
  end
43327
43327
  begin
43328
43328
 
43329
- nested = BEL::Model::Statement.new()
43329
+ nested = BEL::Nanopub::Statement.new()
43330
43330
  @statement_stack.last.object = nested
43331
43331
  @statement_stack.push nested
43332
43332
  end
@@ -43362,7 +43362,7 @@ n = 0 end
43362
43362
 
43363
43363
  if @statement.relationship == :hasComponents
43364
43364
  @statement.object.arguments.each do |arg|
43365
- statement = BEL::Model::Statement.new(
43365
+ statement = BEL::Nanopub::Statement.new(
43366
43366
  @statement.subject, :hasComponent, arg, @statement.comment
43367
43367
  )
43368
43368
  statement.annotations = @statement.annotations
@@ -43370,7 +43370,7 @@ n = 0 end
43370
43370
  end
43371
43371
  elsif @statement.relationship == :hasMembers
43372
43372
  @statement.object.arguments.each do |arg|
43373
- statement = BEL::Model::Statement.new(
43373
+ statement = BEL::Nanopub::Statement.new(
43374
43374
  @statement.subject, :hasMember, arg, @statement.comment
43375
43375
  )
43376
43376
  statement.annotations = @statement.annotations
@@ -43403,7 +43403,7 @@ n = 0 end
43403
43403
 
43404
43404
  if @statement.relationship == :hasComponents
43405
43405
  @statement.object.arguments.each do |arg|
43406
- statement = BEL::Model::Statement.new(
43406
+ statement = BEL::Nanopub::Statement.new(
43407
43407
  @statement.subject, :hasComponent, arg, @statement.comment
43408
43408
  )
43409
43409
  statement.annotations = @statement.annotations
@@ -43411,7 +43411,7 @@ n = 0 end
43411
43411
  end
43412
43412
  elsif @statement.relationship == :hasMembers
43413
43413
  @statement.object.arguments.each do |arg|
43414
- statement = BEL::Model::Statement.new(
43414
+ statement = BEL::Nanopub::Statement.new(
43415
43415
  @statement.subject, :hasMember, arg, @statement.comment
43416
43416
  )
43417
43417
  statement.annotations = @statement.annotations
@@ -43454,7 +43454,7 @@ n = 0 end
43454
43454
 
43455
43455
  if @statement.relationship == :hasComponents
43456
43456
  @statement.object.arguments.each do |arg|
43457
- statement = BEL::Model::Statement.new(
43457
+ statement = BEL::Nanopub::Statement.new(
43458
43458
  @statement.subject, :hasComponent, arg, @statement.comment
43459
43459
  )
43460
43460
  statement.annotations = @statement.annotations
@@ -43462,7 +43462,7 @@ n = 0 end
43462
43462
  end
43463
43463
  elsif @statement.relationship == :hasMembers
43464
43464
  @statement.object.arguments.each do |arg|
43465
- statement = BEL::Model::Statement.new(
43465
+ statement = BEL::Nanopub::Statement.new(
43466
43466
  @statement.subject, :hasMember, arg, @statement.comment
43467
43467
  )
43468
43468
  statement.annotations = @statement.annotations
@@ -43482,7 +43482,7 @@ n = 0 end
43482
43482
  begin
43483
43483
 
43484
43484
  fx = @name.to_sym
43485
- @term_stack.push(BEL::Model::Term.new(fx, []))
43485
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
43486
43486
  @pfx = nil
43487
43487
  @pbuf = []
43488
43488
  end
@@ -43512,7 +43512,7 @@ n = 0 end
43512
43512
 
43513
43513
  if @statement.relationship == :hasComponents
43514
43514
  @statement.object.arguments.each do |arg|
43515
- statement = BEL::Model::Statement.new(
43515
+ statement = BEL::Nanopub::Statement.new(
43516
43516
  @statement.subject, :hasComponent, arg, @statement.comment
43517
43517
  )
43518
43518
  statement.annotations = @statement.annotations
@@ -43520,7 +43520,7 @@ n = 0 end
43520
43520
  end
43521
43521
  elsif @statement.relationship == :hasMembers
43522
43522
  @statement.object.arguments.each do |arg|
43523
- statement = BEL::Model::Statement.new(
43523
+ statement = BEL::Nanopub::Statement.new(
43524
43524
  @statement.subject, :hasMember, arg, @statement.comment
43525
43525
  )
43526
43526
  statement.annotations = @statement.annotations
@@ -43557,7 +43557,7 @@ n = 0 end
43557
43557
 
43558
43558
  if @statement.relationship == :hasComponents
43559
43559
  @statement.object.arguments.each do |arg|
43560
- statement = BEL::Model::Statement.new(
43560
+ statement = BEL::Nanopub::Statement.new(
43561
43561
  @statement.subject, :hasComponent, arg, @statement.comment
43562
43562
  )
43563
43563
  statement.annotations = @statement.annotations
@@ -43565,7 +43565,7 @@ n = 0 end
43565
43565
  end
43566
43566
  elsif @statement.relationship == :hasMembers
43567
43567
  @statement.object.arguments.each do |arg|
43568
- statement = BEL::Model::Statement.new(
43568
+ statement = BEL::Nanopub::Statement.new(
43569
43569
  @statement.subject, :hasMember, arg, @statement.comment
43570
43570
  )
43571
43571
  statement.annotations = @statement.annotations
@@ -43634,7 +43634,7 @@ n = 0 end
43634
43634
  p -= 1; end
43635
43635
  begin
43636
43636
 
43637
- @statement = BEL::Model::Statement.new()
43637
+ @statement = BEL::Nanopub::Statement.new()
43638
43638
  @statement_stack = [@statement]
43639
43639
  end
43640
43640
  begin
@@ -43660,7 +43660,7 @@ p -= 1; end
43660
43660
  begin
43661
43661
 
43662
43662
  fx = @name.to_sym
43663
- @term_stack.push(BEL::Model::Term.new(fx, []))
43663
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
43664
43664
  @pfx = nil
43665
43665
  @pbuf = []
43666
43666
  end
@@ -43720,7 +43720,7 @@ p -= 1; end
43720
43720
 
43721
43721
  if @statement.relationship == :hasComponents
43722
43722
  @statement.object.arguments.each do |arg|
43723
- statement = BEL::Model::Statement.new(
43723
+ statement = BEL::Nanopub::Statement.new(
43724
43724
  @statement.subject, :hasComponent, arg, @statement.comment
43725
43725
  )
43726
43726
  statement.annotations = @statement.annotations
@@ -43728,7 +43728,7 @@ p -= 1; end
43728
43728
  end
43729
43729
  elsif @statement.relationship == :hasMembers
43730
43730
  @statement.object.arguments.each do |arg|
43731
- statement = BEL::Model::Statement.new(
43731
+ statement = BEL::Nanopub::Statement.new(
43732
43732
  @statement.subject, :hasMember, arg, @statement.comment
43733
43733
  )
43734
43734
  statement.annotations = @statement.annotations
@@ -43769,7 +43769,7 @@ n = 0 end
43769
43769
 
43770
43770
  if @statement.relationship == :hasComponents
43771
43771
  @statement.object.arguments.each do |arg|
43772
- statement = BEL::Model::Statement.new(
43772
+ statement = BEL::Nanopub::Statement.new(
43773
43773
  @statement.subject, :hasComponent, arg, @statement.comment
43774
43774
  )
43775
43775
  statement.annotations = @statement.annotations
@@ -43777,7 +43777,7 @@ n = 0 end
43777
43777
  end
43778
43778
  elsif @statement.relationship == :hasMembers
43779
43779
  @statement.object.arguments.each do |arg|
43780
- statement = BEL::Model::Statement.new(
43780
+ statement = BEL::Nanopub::Statement.new(
43781
43781
  @statement.subject, :hasMember, arg, @statement.comment
43782
43782
  )
43783
43783
  statement.annotations = @statement.annotations
@@ -43812,12 +43812,12 @@ n = 0 end
43812
43812
 
43813
43813
  ns =
43814
43814
  if @pfx
43815
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
43815
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
43816
43816
  else
43817
43817
  nil
43818
43818
  end
43819
43819
 
43820
- param = BEL::Model::Parameter.new(ns, val)
43820
+ param = BEL::Nanopub::Parameter.new(ns, val)
43821
43821
  @term_stack.last << param
43822
43822
 
43823
43823
  yield param
@@ -43867,12 +43867,12 @@ n = 0 end
43867
43867
 
43868
43868
  ns =
43869
43869
  if @pfx
43870
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
43870
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
43871
43871
  else
43872
43872
  nil
43873
43873
  end
43874
43874
 
43875
- param = BEL::Model::Parameter.new(ns, val)
43875
+ param = BEL::Nanopub::Parameter.new(ns, val)
43876
43876
  @term_stack.last << param
43877
43877
 
43878
43878
  yield param
@@ -43994,7 +43994,7 @@ end
43994
43994
 
43995
43995
  require_relative 'language'
43996
43996
  require_relative 'namespace'
43997
- require_relative 'evidence_model'
43997
+ require_relative 'nanopub'
43998
43998
  require_relative 'nonblocking_io_wrapper'
43999
43999
 
44000
44000
  module BEL
@@ -52916,7 +52916,7 @@ begin
52916
52916
 
52917
52917
  if @statement.relationship == :hasComponents
52918
52918
  @statement.object.arguments.each do |arg|
52919
- statement = BEL::Model::Statement.new(
52919
+ statement = BEL::Nanopub::Statement.new(
52920
52920
  @statement.subject, :hasComponent, arg, @statement.comment
52921
52921
  )
52922
52922
  statement.annotations = @statement.annotations
@@ -52924,7 +52924,7 @@ begin
52924
52924
  end
52925
52925
  elsif @statement.relationship == :hasMembers
52926
52926
  @statement.object.arguments.each do |arg|
52927
- statement = BEL::Model::Statement.new(
52927
+ statement = BEL::Nanopub::Statement.new(
52928
52928
  @statement.subject, :hasMember, arg, @statement.comment
52929
52929
  )
52930
52930
  statement.annotations = @statement.annotations
@@ -52977,12 +52977,12 @@ begin
52977
52977
 
52978
52978
  ns =
52979
52979
  if @pfx
52980
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
52980
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
52981
52981
  else
52982
52982
  nil
52983
52983
  end
52984
52984
 
52985
- param = BEL::Model::Parameter.new(ns, val)
52985
+ param = BEL::Nanopub::Parameter.new(ns, val)
52986
52986
  @term_stack.last << param
52987
52987
 
52988
52988
  yield param
@@ -53111,12 +53111,12 @@ begin
53111
53111
 
53112
53112
  ns =
53113
53113
  if @pfx
53114
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
53114
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
53115
53115
  else
53116
53116
  nil
53117
53117
  end
53118
53118
 
53119
- param = BEL::Model::Parameter.new(ns, val)
53119
+ param = BEL::Nanopub::Parameter.new(ns, val)
53120
53120
  @term_stack.last << param
53121
53121
 
53122
53122
  yield param
@@ -53302,7 +53302,7 @@ begin
53302
53302
 
53303
53303
  if @statement.relationship == :hasComponents
53304
53304
  @statement.object.arguments.each do |arg|
53305
- statement = BEL::Model::Statement.new(
53305
+ statement = BEL::Nanopub::Statement.new(
53306
53306
  @statement.subject, :hasComponent, arg, @statement.comment
53307
53307
  )
53308
53308
  statement.annotations = @statement.annotations
@@ -53310,7 +53310,7 @@ begin
53310
53310
  end
53311
53311
  elsif @statement.relationship == :hasMembers
53312
53312
  @statement.object.arguments.each do |arg|
53313
- statement = BEL::Model::Statement.new(
53313
+ statement = BEL::Nanopub::Statement.new(
53314
53314
  @statement.subject, :hasMember, arg, @statement.comment
53315
53315
  )
53316
53316
  statement.annotations = @statement.annotations
@@ -53331,7 +53331,7 @@ begin
53331
53331
  when 110 then
53332
53332
  begin
53333
53333
 
53334
- @statement = BEL::Model::Statement.new()
53334
+ @statement = BEL::Nanopub::Statement.new()
53335
53335
  @statement_stack = [@statement]
53336
53336
  end
53337
53337
  begin
@@ -53372,7 +53372,7 @@ p -= 1; begin
53372
53372
 
53373
53373
  if @statement.relationship == :hasComponents
53374
53374
  @statement.object.arguments.each do |arg|
53375
- statement = BEL::Model::Statement.new(
53375
+ statement = BEL::Nanopub::Statement.new(
53376
53376
  @statement.subject, :hasComponent, arg, @statement.comment
53377
53377
  )
53378
53378
  statement.annotations = @statement.annotations
@@ -53380,7 +53380,7 @@ p -= 1; begin
53380
53380
  end
53381
53381
  elsif @statement.relationship == :hasMembers
53382
53382
  @statement.object.arguments.each do |arg|
53383
- statement = BEL::Model::Statement.new(
53383
+ statement = BEL::Nanopub::Statement.new(
53384
53384
  @statement.subject, :hasMember, arg, @statement.comment
53385
53385
  )
53386
53386
  statement.annotations = @statement.annotations
@@ -53393,7 +53393,7 @@ p -= 1; begin
53393
53393
  when 63 then
53394
53394
  begin
53395
53395
 
53396
- nested = BEL::Model::Statement.new()
53396
+ nested = BEL::Nanopub::Statement.new()
53397
53397
  @statement_stack.last.object = nested
53398
53398
  @statement_stack.push nested
53399
53399
  end
@@ -53422,7 +53422,7 @@ p -= 1; begin
53422
53422
 
53423
53423
  if @statement.relationship == :hasComponents
53424
53424
  @statement.object.arguments.each do |arg|
53425
- statement = BEL::Model::Statement.new(
53425
+ statement = BEL::Nanopub::Statement.new(
53426
53426
  @statement.subject, :hasComponent, arg, @statement.comment
53427
53427
  )
53428
53428
  statement.annotations = @statement.annotations
@@ -53430,7 +53430,7 @@ p -= 1; begin
53430
53430
  end
53431
53431
  elsif @statement.relationship == :hasMembers
53432
53432
  @statement.object.arguments.each do |arg|
53433
- statement = BEL::Model::Statement.new(
53433
+ statement = BEL::Nanopub::Statement.new(
53434
53434
  @statement.subject, :hasMember, arg, @statement.comment
53435
53435
  )
53436
53436
  statement.annotations = @statement.annotations
@@ -53519,7 +53519,7 @@ p -= 1; begin
53519
53519
  begin
53520
53520
 
53521
53521
  fx = @name.to_sym
53522
- @term_stack.push(BEL::Model::Term.new(fx, []))
53522
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
53523
53523
  @pfx = nil
53524
53524
  @pbuf = []
53525
53525
  end
@@ -53543,12 +53543,12 @@ p -= 1; begin
53543
53543
 
53544
53544
  ns =
53545
53545
  if @pfx
53546
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
53546
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
53547
53547
  else
53548
53548
  nil
53549
53549
  end
53550
53550
 
53551
- param = BEL::Model::Parameter.new(ns, val)
53551
+ param = BEL::Nanopub::Parameter.new(ns, val)
53552
53552
  @term_stack.last << param
53553
53553
 
53554
53554
  yield param
@@ -53654,7 +53654,7 @@ n = 0 end
53654
53654
  begin
53655
53655
 
53656
53656
  fx = @name.to_sym
53657
- @term_stack.push(BEL::Model::Term.new(fx, []))
53657
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
53658
53658
  @pfx = nil
53659
53659
  @pbuf = []
53660
53660
  end
@@ -53844,7 +53844,7 @@ n = 0 end
53844
53844
 
53845
53845
  if @statement.relationship == :hasComponents
53846
53846
  @statement.object.arguments.each do |arg|
53847
- statement = BEL::Model::Statement.new(
53847
+ statement = BEL::Nanopub::Statement.new(
53848
53848
  @statement.subject, :hasComponent, arg, @statement.comment
53849
53849
  )
53850
53850
  statement.annotations = @statement.annotations
@@ -53852,7 +53852,7 @@ n = 0 end
53852
53852
  end
53853
53853
  elsif @statement.relationship == :hasMembers
53854
53854
  @statement.object.arguments.each do |arg|
53855
- statement = BEL::Model::Statement.new(
53855
+ statement = BEL::Nanopub::Statement.new(
53856
53856
  @statement.subject, :hasMember, arg, @statement.comment
53857
53857
  )
53858
53858
  statement.annotations = @statement.annotations
@@ -53888,7 +53888,7 @@ n = 0 end
53888
53888
 
53889
53889
  if @statement.relationship == :hasComponents
53890
53890
  @statement.object.arguments.each do |arg|
53891
- statement = BEL::Model::Statement.new(
53891
+ statement = BEL::Nanopub::Statement.new(
53892
53892
  @statement.subject, :hasComponent, arg, @statement.comment
53893
53893
  )
53894
53894
  statement.annotations = @statement.annotations
@@ -53896,7 +53896,7 @@ n = 0 end
53896
53896
  end
53897
53897
  elsif @statement.relationship == :hasMembers
53898
53898
  @statement.object.arguments.each do |arg|
53899
- statement = BEL::Model::Statement.new(
53899
+ statement = BEL::Nanopub::Statement.new(
53900
53900
  @statement.subject, :hasMember, arg, @statement.comment
53901
53901
  )
53902
53902
  statement.annotations = @statement.annotations
@@ -53945,7 +53945,7 @@ n = 0 end
53945
53945
  end
53946
53946
  begin
53947
53947
 
53948
- nested = BEL::Model::Statement.new()
53948
+ nested = BEL::Nanopub::Statement.new()
53949
53949
  @statement_stack.last.object = nested
53950
53950
  @statement_stack.push nested
53951
53951
  end
@@ -53989,7 +53989,7 @@ n = 0 end
53989
53989
  @cmtbuffer << data[p].ord end
53990
53990
  begin
53991
53991
 
53992
- nested = BEL::Model::Statement.new()
53992
+ nested = BEL::Nanopub::Statement.new()
53993
53993
  @statement_stack.last.object = nested
53994
53994
  @statement_stack.push nested
53995
53995
  end
@@ -54030,7 +54030,7 @@ n = 0 end
54030
54030
 
54031
54031
  if @statement.relationship == :hasComponents
54032
54032
  @statement.object.arguments.each do |arg|
54033
- statement = BEL::Model::Statement.new(
54033
+ statement = BEL::Nanopub::Statement.new(
54034
54034
  @statement.subject, :hasComponent, arg, @statement.comment
54035
54035
  )
54036
54036
  statement.annotations = @statement.annotations
@@ -54038,7 +54038,7 @@ n = 0 end
54038
54038
  end
54039
54039
  elsif @statement.relationship == :hasMembers
54040
54040
  @statement.object.arguments.each do |arg|
54041
- statement = BEL::Model::Statement.new(
54041
+ statement = BEL::Nanopub::Statement.new(
54042
54042
  @statement.subject, :hasMember, arg, @statement.comment
54043
54043
  )
54044
54044
  statement.annotations = @statement.annotations
@@ -54075,7 +54075,7 @@ n = 0 end
54075
54075
 
54076
54076
  if @statement.relationship == :hasComponents
54077
54077
  @statement.object.arguments.each do |arg|
54078
- statement = BEL::Model::Statement.new(
54078
+ statement = BEL::Nanopub::Statement.new(
54079
54079
  @statement.subject, :hasComponent, arg, @statement.comment
54080
54080
  )
54081
54081
  statement.annotations = @statement.annotations
@@ -54083,7 +54083,7 @@ n = 0 end
54083
54083
  end
54084
54084
  elsif @statement.relationship == :hasMembers
54085
54085
  @statement.object.arguments.each do |arg|
54086
- statement = BEL::Model::Statement.new(
54086
+ statement = BEL::Nanopub::Statement.new(
54087
54087
  @statement.subject, :hasMember, arg, @statement.comment
54088
54088
  )
54089
54089
  statement.annotations = @statement.annotations
@@ -54109,7 +54109,7 @@ n = 0 end
54109
54109
  begin
54110
54110
 
54111
54111
  fx = @name.to_sym
54112
- @term_stack.push(BEL::Model::Term.new(fx, []))
54112
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
54113
54113
  @pfx = nil
54114
54114
  @pbuf = []
54115
54115
  end
@@ -54138,7 +54138,7 @@ n = 0 end
54138
54138
  p -= 1; end
54139
54139
  begin
54140
54140
 
54141
- @statement = BEL::Model::Statement.new()
54141
+ @statement = BEL::Nanopub::Statement.new()
54142
54142
  @statement_stack = [@statement]
54143
54143
  end
54144
54144
  begin
@@ -54162,7 +54162,7 @@ p -= 1; end
54162
54162
  begin
54163
54163
 
54164
54164
  fx = @name.to_sym
54165
- @term_stack.push(BEL::Model::Term.new(fx, []))
54165
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
54166
54166
  @pfx = nil
54167
54167
  @pbuf = []
54168
54168
  end
@@ -54220,7 +54220,7 @@ p -= 1; end
54220
54220
  p -= 1; end
54221
54221
  begin
54222
54222
 
54223
- @statement = BEL::Model::Statement.new()
54223
+ @statement = BEL::Nanopub::Statement.new()
54224
54224
  @statement_stack = [@statement]
54225
54225
  end
54226
54226
  begin
@@ -54248,7 +54248,7 @@ p -= 1; end
54248
54248
  p -= 1; end
54249
54249
  begin
54250
54250
 
54251
- @statement = BEL::Model::Statement.new()
54251
+ @statement = BEL::Nanopub::Statement.new()
54252
54252
  @statement_stack = [@statement]
54253
54253
  end
54254
54254
  begin
@@ -54276,7 +54276,7 @@ p -= 1; end
54276
54276
  p -= 1; end
54277
54277
  begin
54278
54278
 
54279
- @statement = BEL::Model::Statement.new()
54279
+ @statement = BEL::Nanopub::Statement.new()
54280
54280
  @statement_stack = [@statement]
54281
54281
  end
54282
54282
  begin
@@ -54304,7 +54304,7 @@ p -= 1; end
54304
54304
  p -= 1; end
54305
54305
  begin
54306
54306
 
54307
- @statement = BEL::Model::Statement.new()
54307
+ @statement = BEL::Nanopub::Statement.new()
54308
54308
  @statement_stack = [@statement]
54309
54309
  end
54310
54310
  begin
@@ -54332,7 +54332,7 @@ p -= 1; end
54332
54332
 
54333
54333
  if @statement.relationship == :hasComponents
54334
54334
  @statement.object.arguments.each do |arg|
54335
- statement = BEL::Model::Statement.new(
54335
+ statement = BEL::Nanopub::Statement.new(
54336
54336
  @statement.subject, :hasComponent, arg, @statement.comment
54337
54337
  )
54338
54338
  statement.annotations = @statement.annotations
@@ -54340,7 +54340,7 @@ p -= 1; end
54340
54340
  end
54341
54341
  elsif @statement.relationship == :hasMembers
54342
54342
  @statement.object.arguments.each do |arg|
54343
- statement = BEL::Model::Statement.new(
54343
+ statement = BEL::Nanopub::Statement.new(
54344
54344
  @statement.subject, :hasMember, arg, @statement.comment
54345
54345
  )
54346
54346
  statement.annotations = @statement.annotations
@@ -54376,7 +54376,7 @@ n = 0 end
54376
54376
 
54377
54377
  if @statement.relationship == :hasComponents
54378
54378
  @statement.object.arguments.each do |arg|
54379
- statement = BEL::Model::Statement.new(
54379
+ statement = BEL::Nanopub::Statement.new(
54380
54380
  @statement.subject, :hasComponent, arg, @statement.comment
54381
54381
  )
54382
54382
  statement.annotations = @statement.annotations
@@ -54384,7 +54384,7 @@ n = 0 end
54384
54384
  end
54385
54385
  elsif @statement.relationship == :hasMembers
54386
54386
  @statement.object.arguments.each do |arg|
54387
- statement = BEL::Model::Statement.new(
54387
+ statement = BEL::Nanopub::Statement.new(
54388
54388
  @statement.subject, :hasMember, arg, @statement.comment
54389
54389
  )
54390
54390
  statement.annotations = @statement.annotations
@@ -54446,7 +54446,7 @@ n = 0 end
54446
54446
  end
54447
54447
  begin
54448
54448
 
54449
- nested = BEL::Model::Statement.new()
54449
+ nested = BEL::Nanopub::Statement.new()
54450
54450
  @statement_stack.last.object = nested
54451
54451
  @statement_stack.push nested
54452
54452
  end
@@ -54482,7 +54482,7 @@ n = 0 end
54482
54482
 
54483
54483
  if @statement.relationship == :hasComponents
54484
54484
  @statement.object.arguments.each do |arg|
54485
- statement = BEL::Model::Statement.new(
54485
+ statement = BEL::Nanopub::Statement.new(
54486
54486
  @statement.subject, :hasComponent, arg, @statement.comment
54487
54487
  )
54488
54488
  statement.annotations = @statement.annotations
@@ -54490,7 +54490,7 @@ n = 0 end
54490
54490
  end
54491
54491
  elsif @statement.relationship == :hasMembers
54492
54492
  @statement.object.arguments.each do |arg|
54493
- statement = BEL::Model::Statement.new(
54493
+ statement = BEL::Nanopub::Statement.new(
54494
54494
  @statement.subject, :hasMember, arg, @statement.comment
54495
54495
  )
54496
54496
  statement.annotations = @statement.annotations
@@ -54523,7 +54523,7 @@ n = 0 end
54523
54523
 
54524
54524
  if @statement.relationship == :hasComponents
54525
54525
  @statement.object.arguments.each do |arg|
54526
- statement = BEL::Model::Statement.new(
54526
+ statement = BEL::Nanopub::Statement.new(
54527
54527
  @statement.subject, :hasComponent, arg, @statement.comment
54528
54528
  )
54529
54529
  statement.annotations = @statement.annotations
@@ -54531,7 +54531,7 @@ n = 0 end
54531
54531
  end
54532
54532
  elsif @statement.relationship == :hasMembers
54533
54533
  @statement.object.arguments.each do |arg|
54534
- statement = BEL::Model::Statement.new(
54534
+ statement = BEL::Nanopub::Statement.new(
54535
54535
  @statement.subject, :hasMember, arg, @statement.comment
54536
54536
  )
54537
54537
  statement.annotations = @statement.annotations
@@ -54574,7 +54574,7 @@ n = 0 end
54574
54574
 
54575
54575
  if @statement.relationship == :hasComponents
54576
54576
  @statement.object.arguments.each do |arg|
54577
- statement = BEL::Model::Statement.new(
54577
+ statement = BEL::Nanopub::Statement.new(
54578
54578
  @statement.subject, :hasComponent, arg, @statement.comment
54579
54579
  )
54580
54580
  statement.annotations = @statement.annotations
@@ -54582,7 +54582,7 @@ n = 0 end
54582
54582
  end
54583
54583
  elsif @statement.relationship == :hasMembers
54584
54584
  @statement.object.arguments.each do |arg|
54585
- statement = BEL::Model::Statement.new(
54585
+ statement = BEL::Nanopub::Statement.new(
54586
54586
  @statement.subject, :hasMember, arg, @statement.comment
54587
54587
  )
54588
54588
  statement.annotations = @statement.annotations
@@ -54602,7 +54602,7 @@ n = 0 end
54602
54602
  begin
54603
54603
 
54604
54604
  fx = @name.to_sym
54605
- @term_stack.push(BEL::Model::Term.new(fx, []))
54605
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
54606
54606
  @pfx = nil
54607
54607
  @pbuf = []
54608
54608
  end
@@ -54632,7 +54632,7 @@ n = 0 end
54632
54632
 
54633
54633
  if @statement.relationship == :hasComponents
54634
54634
  @statement.object.arguments.each do |arg|
54635
- statement = BEL::Model::Statement.new(
54635
+ statement = BEL::Nanopub::Statement.new(
54636
54636
  @statement.subject, :hasComponent, arg, @statement.comment
54637
54637
  )
54638
54638
  statement.annotations = @statement.annotations
@@ -54640,7 +54640,7 @@ n = 0 end
54640
54640
  end
54641
54641
  elsif @statement.relationship == :hasMembers
54642
54642
  @statement.object.arguments.each do |arg|
54643
- statement = BEL::Model::Statement.new(
54643
+ statement = BEL::Nanopub::Statement.new(
54644
54644
  @statement.subject, :hasMember, arg, @statement.comment
54645
54645
  )
54646
54646
  statement.annotations = @statement.annotations
@@ -54677,7 +54677,7 @@ n = 0 end
54677
54677
 
54678
54678
  if @statement.relationship == :hasComponents
54679
54679
  @statement.object.arguments.each do |arg|
54680
- statement = BEL::Model::Statement.new(
54680
+ statement = BEL::Nanopub::Statement.new(
54681
54681
  @statement.subject, :hasComponent, arg, @statement.comment
54682
54682
  )
54683
54683
  statement.annotations = @statement.annotations
@@ -54685,7 +54685,7 @@ n = 0 end
54685
54685
  end
54686
54686
  elsif @statement.relationship == :hasMembers
54687
54687
  @statement.object.arguments.each do |arg|
54688
- statement = BEL::Model::Statement.new(
54688
+ statement = BEL::Nanopub::Statement.new(
54689
54689
  @statement.subject, :hasMember, arg, @statement.comment
54690
54690
  )
54691
54691
  statement.annotations = @statement.annotations
@@ -54754,7 +54754,7 @@ n = 0 end
54754
54754
  p -= 1; end
54755
54755
  begin
54756
54756
 
54757
- @statement = BEL::Model::Statement.new()
54757
+ @statement = BEL::Nanopub::Statement.new()
54758
54758
  @statement_stack = [@statement]
54759
54759
  end
54760
54760
  begin
@@ -54780,7 +54780,7 @@ p -= 1; end
54780
54780
  begin
54781
54781
 
54782
54782
  fx = @name.to_sym
54783
- @term_stack.push(BEL::Model::Term.new(fx, []))
54783
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
54784
54784
  @pfx = nil
54785
54785
  @pbuf = []
54786
54786
  end
@@ -54840,7 +54840,7 @@ p -= 1; end
54840
54840
 
54841
54841
  if @statement.relationship == :hasComponents
54842
54842
  @statement.object.arguments.each do |arg|
54843
- statement = BEL::Model::Statement.new(
54843
+ statement = BEL::Nanopub::Statement.new(
54844
54844
  @statement.subject, :hasComponent, arg, @statement.comment
54845
54845
  )
54846
54846
  statement.annotations = @statement.annotations
@@ -54848,7 +54848,7 @@ p -= 1; end
54848
54848
  end
54849
54849
  elsif @statement.relationship == :hasMembers
54850
54850
  @statement.object.arguments.each do |arg|
54851
- statement = BEL::Model::Statement.new(
54851
+ statement = BEL::Nanopub::Statement.new(
54852
54852
  @statement.subject, :hasMember, arg, @statement.comment
54853
54853
  )
54854
54854
  statement.annotations = @statement.annotations
@@ -54889,7 +54889,7 @@ n = 0 end
54889
54889
 
54890
54890
  if @statement.relationship == :hasComponents
54891
54891
  @statement.object.arguments.each do |arg|
54892
- statement = BEL::Model::Statement.new(
54892
+ statement = BEL::Nanopub::Statement.new(
54893
54893
  @statement.subject, :hasComponent, arg, @statement.comment
54894
54894
  )
54895
54895
  statement.annotations = @statement.annotations
@@ -54897,7 +54897,7 @@ n = 0 end
54897
54897
  end
54898
54898
  elsif @statement.relationship == :hasMembers
54899
54899
  @statement.object.arguments.each do |arg|
54900
- statement = BEL::Model::Statement.new(
54900
+ statement = BEL::Nanopub::Statement.new(
54901
54901
  @statement.subject, :hasMember, arg, @statement.comment
54902
54902
  )
54903
54903
  statement.annotations = @statement.annotations
@@ -54932,12 +54932,12 @@ n = 0 end
54932
54932
 
54933
54933
  ns =
54934
54934
  if @pfx
54935
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
54935
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
54936
54936
  else
54937
54937
  nil
54938
54938
  end
54939
54939
 
54940
- param = BEL::Model::Parameter.new(ns, val)
54940
+ param = BEL::Nanopub::Parameter.new(ns, val)
54941
54941
  @term_stack.last << param
54942
54942
 
54943
54943
  yield param
@@ -54987,12 +54987,12 @@ n = 0 end
54987
54987
 
54988
54988
  ns =
54989
54989
  if @pfx
54990
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
54990
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
54991
54991
  else
54992
54992
  nil
54993
54993
  end
54994
54994
 
54995
- param = BEL::Model::Parameter.new(ns, val)
54995
+ param = BEL::Nanopub::Parameter.new(ns, val)
54996
54996
  @term_stack.last << param
54997
54997
 
54998
54998
  yield param
@@ -63947,7 +63947,7 @@ begin
63947
63947
 
63948
63948
  if @statement.relationship == :hasComponents
63949
63949
  @statement.object.arguments.each do |arg|
63950
- statement = BEL::Model::Statement.new(
63950
+ statement = BEL::Nanopub::Statement.new(
63951
63951
  @statement.subject, :hasComponent, arg, @statement.comment
63952
63952
  )
63953
63953
  statement.annotations = @statement.annotations
@@ -63955,7 +63955,7 @@ begin
63955
63955
  end
63956
63956
  elsif @statement.relationship == :hasMembers
63957
63957
  @statement.object.arguments.each do |arg|
63958
- statement = BEL::Model::Statement.new(
63958
+ statement = BEL::Nanopub::Statement.new(
63959
63959
  @statement.subject, :hasMember, arg, @statement.comment
63960
63960
  )
63961
63961
  statement.annotations = @statement.annotations
@@ -64008,12 +64008,12 @@ begin
64008
64008
 
64009
64009
  ns =
64010
64010
  if @pfx
64011
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
64011
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
64012
64012
  else
64013
64013
  nil
64014
64014
  end
64015
64015
 
64016
- param = BEL::Model::Parameter.new(ns, val)
64016
+ param = BEL::Nanopub::Parameter.new(ns, val)
64017
64017
  @term_stack.last << param
64018
64018
 
64019
64019
  yield param
@@ -64142,12 +64142,12 @@ begin
64142
64142
 
64143
64143
  ns =
64144
64144
  if @pfx
64145
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
64145
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
64146
64146
  else
64147
64147
  nil
64148
64148
  end
64149
64149
 
64150
- param = BEL::Model::Parameter.new(ns, val)
64150
+ param = BEL::Nanopub::Parameter.new(ns, val)
64151
64151
  @term_stack.last << param
64152
64152
 
64153
64153
  yield param
@@ -64333,7 +64333,7 @@ begin
64333
64333
 
64334
64334
  if @statement.relationship == :hasComponents
64335
64335
  @statement.object.arguments.each do |arg|
64336
- statement = BEL::Model::Statement.new(
64336
+ statement = BEL::Nanopub::Statement.new(
64337
64337
  @statement.subject, :hasComponent, arg, @statement.comment
64338
64338
  )
64339
64339
  statement.annotations = @statement.annotations
@@ -64341,7 +64341,7 @@ begin
64341
64341
  end
64342
64342
  elsif @statement.relationship == :hasMembers
64343
64343
  @statement.object.arguments.each do |arg|
64344
- statement = BEL::Model::Statement.new(
64344
+ statement = BEL::Nanopub::Statement.new(
64345
64345
  @statement.subject, :hasMember, arg, @statement.comment
64346
64346
  )
64347
64347
  statement.annotations = @statement.annotations
@@ -64362,7 +64362,7 @@ begin
64362
64362
  when 110 then
64363
64363
  begin
64364
64364
 
64365
- @statement = BEL::Model::Statement.new()
64365
+ @statement = BEL::Nanopub::Statement.new()
64366
64366
  @statement_stack = [@statement]
64367
64367
  end
64368
64368
  begin
@@ -64403,7 +64403,7 @@ p -= 1; begin
64403
64403
 
64404
64404
  if @statement.relationship == :hasComponents
64405
64405
  @statement.object.arguments.each do |arg|
64406
- statement = BEL::Model::Statement.new(
64406
+ statement = BEL::Nanopub::Statement.new(
64407
64407
  @statement.subject, :hasComponent, arg, @statement.comment
64408
64408
  )
64409
64409
  statement.annotations = @statement.annotations
@@ -64411,7 +64411,7 @@ p -= 1; begin
64411
64411
  end
64412
64412
  elsif @statement.relationship == :hasMembers
64413
64413
  @statement.object.arguments.each do |arg|
64414
- statement = BEL::Model::Statement.new(
64414
+ statement = BEL::Nanopub::Statement.new(
64415
64415
  @statement.subject, :hasMember, arg, @statement.comment
64416
64416
  )
64417
64417
  statement.annotations = @statement.annotations
@@ -64424,7 +64424,7 @@ p -= 1; begin
64424
64424
  when 63 then
64425
64425
  begin
64426
64426
 
64427
- nested = BEL::Model::Statement.new()
64427
+ nested = BEL::Nanopub::Statement.new()
64428
64428
  @statement_stack.last.object = nested
64429
64429
  @statement_stack.push nested
64430
64430
  end
@@ -64453,7 +64453,7 @@ p -= 1; begin
64453
64453
 
64454
64454
  if @statement.relationship == :hasComponents
64455
64455
  @statement.object.arguments.each do |arg|
64456
- statement = BEL::Model::Statement.new(
64456
+ statement = BEL::Nanopub::Statement.new(
64457
64457
  @statement.subject, :hasComponent, arg, @statement.comment
64458
64458
  )
64459
64459
  statement.annotations = @statement.annotations
@@ -64461,7 +64461,7 @@ p -= 1; begin
64461
64461
  end
64462
64462
  elsif @statement.relationship == :hasMembers
64463
64463
  @statement.object.arguments.each do |arg|
64464
- statement = BEL::Model::Statement.new(
64464
+ statement = BEL::Nanopub::Statement.new(
64465
64465
  @statement.subject, :hasMember, arg, @statement.comment
64466
64466
  )
64467
64467
  statement.annotations = @statement.annotations
@@ -64550,7 +64550,7 @@ p -= 1; begin
64550
64550
  begin
64551
64551
 
64552
64552
  fx = @name.to_sym
64553
- @term_stack.push(BEL::Model::Term.new(fx, []))
64553
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
64554
64554
  @pfx = nil
64555
64555
  @pbuf = []
64556
64556
  end
@@ -64574,12 +64574,12 @@ p -= 1; begin
64574
64574
 
64575
64575
  ns =
64576
64576
  if @pfx
64577
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
64577
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
64578
64578
  else
64579
64579
  nil
64580
64580
  end
64581
64581
 
64582
- param = BEL::Model::Parameter.new(ns, val)
64582
+ param = BEL::Nanopub::Parameter.new(ns, val)
64583
64583
  @term_stack.last << param
64584
64584
 
64585
64585
  yield param
@@ -64685,7 +64685,7 @@ n = 0 end
64685
64685
  begin
64686
64686
 
64687
64687
  fx = @name.to_sym
64688
- @term_stack.push(BEL::Model::Term.new(fx, []))
64688
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
64689
64689
  @pfx = nil
64690
64690
  @pbuf = []
64691
64691
  end
@@ -64875,7 +64875,7 @@ n = 0 end
64875
64875
 
64876
64876
  if @statement.relationship == :hasComponents
64877
64877
  @statement.object.arguments.each do |arg|
64878
- statement = BEL::Model::Statement.new(
64878
+ statement = BEL::Nanopub::Statement.new(
64879
64879
  @statement.subject, :hasComponent, arg, @statement.comment
64880
64880
  )
64881
64881
  statement.annotations = @statement.annotations
@@ -64883,7 +64883,7 @@ n = 0 end
64883
64883
  end
64884
64884
  elsif @statement.relationship == :hasMembers
64885
64885
  @statement.object.arguments.each do |arg|
64886
- statement = BEL::Model::Statement.new(
64886
+ statement = BEL::Nanopub::Statement.new(
64887
64887
  @statement.subject, :hasMember, arg, @statement.comment
64888
64888
  )
64889
64889
  statement.annotations = @statement.annotations
@@ -64919,7 +64919,7 @@ n = 0 end
64919
64919
 
64920
64920
  if @statement.relationship == :hasComponents
64921
64921
  @statement.object.arguments.each do |arg|
64922
- statement = BEL::Model::Statement.new(
64922
+ statement = BEL::Nanopub::Statement.new(
64923
64923
  @statement.subject, :hasComponent, arg, @statement.comment
64924
64924
  )
64925
64925
  statement.annotations = @statement.annotations
@@ -64927,7 +64927,7 @@ n = 0 end
64927
64927
  end
64928
64928
  elsif @statement.relationship == :hasMembers
64929
64929
  @statement.object.arguments.each do |arg|
64930
- statement = BEL::Model::Statement.new(
64930
+ statement = BEL::Nanopub::Statement.new(
64931
64931
  @statement.subject, :hasMember, arg, @statement.comment
64932
64932
  )
64933
64933
  statement.annotations = @statement.annotations
@@ -64976,7 +64976,7 @@ n = 0 end
64976
64976
  end
64977
64977
  begin
64978
64978
 
64979
- nested = BEL::Model::Statement.new()
64979
+ nested = BEL::Nanopub::Statement.new()
64980
64980
  @statement_stack.last.object = nested
64981
64981
  @statement_stack.push nested
64982
64982
  end
@@ -65020,7 +65020,7 @@ n = 0 end
65020
65020
  @cmtbuffer << data[p].ord end
65021
65021
  begin
65022
65022
 
65023
- nested = BEL::Model::Statement.new()
65023
+ nested = BEL::Nanopub::Statement.new()
65024
65024
  @statement_stack.last.object = nested
65025
65025
  @statement_stack.push nested
65026
65026
  end
@@ -65061,7 +65061,7 @@ n = 0 end
65061
65061
 
65062
65062
  if @statement.relationship == :hasComponents
65063
65063
  @statement.object.arguments.each do |arg|
65064
- statement = BEL::Model::Statement.new(
65064
+ statement = BEL::Nanopub::Statement.new(
65065
65065
  @statement.subject, :hasComponent, arg, @statement.comment
65066
65066
  )
65067
65067
  statement.annotations = @statement.annotations
@@ -65069,7 +65069,7 @@ n = 0 end
65069
65069
  end
65070
65070
  elsif @statement.relationship == :hasMembers
65071
65071
  @statement.object.arguments.each do |arg|
65072
- statement = BEL::Model::Statement.new(
65072
+ statement = BEL::Nanopub::Statement.new(
65073
65073
  @statement.subject, :hasMember, arg, @statement.comment
65074
65074
  )
65075
65075
  statement.annotations = @statement.annotations
@@ -65106,7 +65106,7 @@ n = 0 end
65106
65106
 
65107
65107
  if @statement.relationship == :hasComponents
65108
65108
  @statement.object.arguments.each do |arg|
65109
- statement = BEL::Model::Statement.new(
65109
+ statement = BEL::Nanopub::Statement.new(
65110
65110
  @statement.subject, :hasComponent, arg, @statement.comment
65111
65111
  )
65112
65112
  statement.annotations = @statement.annotations
@@ -65114,7 +65114,7 @@ n = 0 end
65114
65114
  end
65115
65115
  elsif @statement.relationship == :hasMembers
65116
65116
  @statement.object.arguments.each do |arg|
65117
- statement = BEL::Model::Statement.new(
65117
+ statement = BEL::Nanopub::Statement.new(
65118
65118
  @statement.subject, :hasMember, arg, @statement.comment
65119
65119
  )
65120
65120
  statement.annotations = @statement.annotations
@@ -65140,7 +65140,7 @@ n = 0 end
65140
65140
  begin
65141
65141
 
65142
65142
  fx = @name.to_sym
65143
- @term_stack.push(BEL::Model::Term.new(fx, []))
65143
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
65144
65144
  @pfx = nil
65145
65145
  @pbuf = []
65146
65146
  end
@@ -65169,7 +65169,7 @@ n = 0 end
65169
65169
  p -= 1; end
65170
65170
  begin
65171
65171
 
65172
- @statement = BEL::Model::Statement.new()
65172
+ @statement = BEL::Nanopub::Statement.new()
65173
65173
  @statement_stack = [@statement]
65174
65174
  end
65175
65175
  begin
@@ -65193,7 +65193,7 @@ p -= 1; end
65193
65193
  begin
65194
65194
 
65195
65195
  fx = @name.to_sym
65196
- @term_stack.push(BEL::Model::Term.new(fx, []))
65196
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
65197
65197
  @pfx = nil
65198
65198
  @pbuf = []
65199
65199
  end
@@ -65251,7 +65251,7 @@ p -= 1; end
65251
65251
  p -= 1; end
65252
65252
  begin
65253
65253
 
65254
- @statement = BEL::Model::Statement.new()
65254
+ @statement = BEL::Nanopub::Statement.new()
65255
65255
  @statement_stack = [@statement]
65256
65256
  end
65257
65257
  begin
@@ -65279,7 +65279,7 @@ p -= 1; end
65279
65279
  p -= 1; end
65280
65280
  begin
65281
65281
 
65282
- @statement = BEL::Model::Statement.new()
65282
+ @statement = BEL::Nanopub::Statement.new()
65283
65283
  @statement_stack = [@statement]
65284
65284
  end
65285
65285
  begin
@@ -65307,7 +65307,7 @@ p -= 1; end
65307
65307
  p -= 1; end
65308
65308
  begin
65309
65309
 
65310
- @statement = BEL::Model::Statement.new()
65310
+ @statement = BEL::Nanopub::Statement.new()
65311
65311
  @statement_stack = [@statement]
65312
65312
  end
65313
65313
  begin
@@ -65335,7 +65335,7 @@ p -= 1; end
65335
65335
  p -= 1; end
65336
65336
  begin
65337
65337
 
65338
- @statement = BEL::Model::Statement.new()
65338
+ @statement = BEL::Nanopub::Statement.new()
65339
65339
  @statement_stack = [@statement]
65340
65340
  end
65341
65341
  begin
@@ -65363,7 +65363,7 @@ p -= 1; end
65363
65363
 
65364
65364
  if @statement.relationship == :hasComponents
65365
65365
  @statement.object.arguments.each do |arg|
65366
- statement = BEL::Model::Statement.new(
65366
+ statement = BEL::Nanopub::Statement.new(
65367
65367
  @statement.subject, :hasComponent, arg, @statement.comment
65368
65368
  )
65369
65369
  statement.annotations = @statement.annotations
@@ -65371,7 +65371,7 @@ p -= 1; end
65371
65371
  end
65372
65372
  elsif @statement.relationship == :hasMembers
65373
65373
  @statement.object.arguments.each do |arg|
65374
- statement = BEL::Model::Statement.new(
65374
+ statement = BEL::Nanopub::Statement.new(
65375
65375
  @statement.subject, :hasMember, arg, @statement.comment
65376
65376
  )
65377
65377
  statement.annotations = @statement.annotations
@@ -65407,7 +65407,7 @@ n = 0 end
65407
65407
 
65408
65408
  if @statement.relationship == :hasComponents
65409
65409
  @statement.object.arguments.each do |arg|
65410
- statement = BEL::Model::Statement.new(
65410
+ statement = BEL::Nanopub::Statement.new(
65411
65411
  @statement.subject, :hasComponent, arg, @statement.comment
65412
65412
  )
65413
65413
  statement.annotations = @statement.annotations
@@ -65415,7 +65415,7 @@ n = 0 end
65415
65415
  end
65416
65416
  elsif @statement.relationship == :hasMembers
65417
65417
  @statement.object.arguments.each do |arg|
65418
- statement = BEL::Model::Statement.new(
65418
+ statement = BEL::Nanopub::Statement.new(
65419
65419
  @statement.subject, :hasMember, arg, @statement.comment
65420
65420
  )
65421
65421
  statement.annotations = @statement.annotations
@@ -65477,7 +65477,7 @@ n = 0 end
65477
65477
  end
65478
65478
  begin
65479
65479
 
65480
- nested = BEL::Model::Statement.new()
65480
+ nested = BEL::Nanopub::Statement.new()
65481
65481
  @statement_stack.last.object = nested
65482
65482
  @statement_stack.push nested
65483
65483
  end
@@ -65513,7 +65513,7 @@ n = 0 end
65513
65513
 
65514
65514
  if @statement.relationship == :hasComponents
65515
65515
  @statement.object.arguments.each do |arg|
65516
- statement = BEL::Model::Statement.new(
65516
+ statement = BEL::Nanopub::Statement.new(
65517
65517
  @statement.subject, :hasComponent, arg, @statement.comment
65518
65518
  )
65519
65519
  statement.annotations = @statement.annotations
@@ -65521,7 +65521,7 @@ n = 0 end
65521
65521
  end
65522
65522
  elsif @statement.relationship == :hasMembers
65523
65523
  @statement.object.arguments.each do |arg|
65524
- statement = BEL::Model::Statement.new(
65524
+ statement = BEL::Nanopub::Statement.new(
65525
65525
  @statement.subject, :hasMember, arg, @statement.comment
65526
65526
  )
65527
65527
  statement.annotations = @statement.annotations
@@ -65554,7 +65554,7 @@ n = 0 end
65554
65554
 
65555
65555
  if @statement.relationship == :hasComponents
65556
65556
  @statement.object.arguments.each do |arg|
65557
- statement = BEL::Model::Statement.new(
65557
+ statement = BEL::Nanopub::Statement.new(
65558
65558
  @statement.subject, :hasComponent, arg, @statement.comment
65559
65559
  )
65560
65560
  statement.annotations = @statement.annotations
@@ -65562,7 +65562,7 @@ n = 0 end
65562
65562
  end
65563
65563
  elsif @statement.relationship == :hasMembers
65564
65564
  @statement.object.arguments.each do |arg|
65565
- statement = BEL::Model::Statement.new(
65565
+ statement = BEL::Nanopub::Statement.new(
65566
65566
  @statement.subject, :hasMember, arg, @statement.comment
65567
65567
  )
65568
65568
  statement.annotations = @statement.annotations
@@ -65605,7 +65605,7 @@ n = 0 end
65605
65605
 
65606
65606
  if @statement.relationship == :hasComponents
65607
65607
  @statement.object.arguments.each do |arg|
65608
- statement = BEL::Model::Statement.new(
65608
+ statement = BEL::Nanopub::Statement.new(
65609
65609
  @statement.subject, :hasComponent, arg, @statement.comment
65610
65610
  )
65611
65611
  statement.annotations = @statement.annotations
@@ -65613,7 +65613,7 @@ n = 0 end
65613
65613
  end
65614
65614
  elsif @statement.relationship == :hasMembers
65615
65615
  @statement.object.arguments.each do |arg|
65616
- statement = BEL::Model::Statement.new(
65616
+ statement = BEL::Nanopub::Statement.new(
65617
65617
  @statement.subject, :hasMember, arg, @statement.comment
65618
65618
  )
65619
65619
  statement.annotations = @statement.annotations
@@ -65633,7 +65633,7 @@ n = 0 end
65633
65633
  begin
65634
65634
 
65635
65635
  fx = @name.to_sym
65636
- @term_stack.push(BEL::Model::Term.new(fx, []))
65636
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
65637
65637
  @pfx = nil
65638
65638
  @pbuf = []
65639
65639
  end
@@ -65663,7 +65663,7 @@ n = 0 end
65663
65663
 
65664
65664
  if @statement.relationship == :hasComponents
65665
65665
  @statement.object.arguments.each do |arg|
65666
- statement = BEL::Model::Statement.new(
65666
+ statement = BEL::Nanopub::Statement.new(
65667
65667
  @statement.subject, :hasComponent, arg, @statement.comment
65668
65668
  )
65669
65669
  statement.annotations = @statement.annotations
@@ -65671,7 +65671,7 @@ n = 0 end
65671
65671
  end
65672
65672
  elsif @statement.relationship == :hasMembers
65673
65673
  @statement.object.arguments.each do |arg|
65674
- statement = BEL::Model::Statement.new(
65674
+ statement = BEL::Nanopub::Statement.new(
65675
65675
  @statement.subject, :hasMember, arg, @statement.comment
65676
65676
  )
65677
65677
  statement.annotations = @statement.annotations
@@ -65708,7 +65708,7 @@ n = 0 end
65708
65708
 
65709
65709
  if @statement.relationship == :hasComponents
65710
65710
  @statement.object.arguments.each do |arg|
65711
- statement = BEL::Model::Statement.new(
65711
+ statement = BEL::Nanopub::Statement.new(
65712
65712
  @statement.subject, :hasComponent, arg, @statement.comment
65713
65713
  )
65714
65714
  statement.annotations = @statement.annotations
@@ -65716,7 +65716,7 @@ n = 0 end
65716
65716
  end
65717
65717
  elsif @statement.relationship == :hasMembers
65718
65718
  @statement.object.arguments.each do |arg|
65719
- statement = BEL::Model::Statement.new(
65719
+ statement = BEL::Nanopub::Statement.new(
65720
65720
  @statement.subject, :hasMember, arg, @statement.comment
65721
65721
  )
65722
65722
  statement.annotations = @statement.annotations
@@ -65785,7 +65785,7 @@ n = 0 end
65785
65785
  p -= 1; end
65786
65786
  begin
65787
65787
 
65788
- @statement = BEL::Model::Statement.new()
65788
+ @statement = BEL::Nanopub::Statement.new()
65789
65789
  @statement_stack = [@statement]
65790
65790
  end
65791
65791
  begin
@@ -65811,7 +65811,7 @@ p -= 1; end
65811
65811
  begin
65812
65812
 
65813
65813
  fx = @name.to_sym
65814
- @term_stack.push(BEL::Model::Term.new(fx, []))
65814
+ @term_stack.push(BEL::Nanopub::Term.new(fx, []))
65815
65815
  @pfx = nil
65816
65816
  @pbuf = []
65817
65817
  end
@@ -65871,7 +65871,7 @@ p -= 1; end
65871
65871
 
65872
65872
  if @statement.relationship == :hasComponents
65873
65873
  @statement.object.arguments.each do |arg|
65874
- statement = BEL::Model::Statement.new(
65874
+ statement = BEL::Nanopub::Statement.new(
65875
65875
  @statement.subject, :hasComponent, arg, @statement.comment
65876
65876
  )
65877
65877
  statement.annotations = @statement.annotations
@@ -65879,7 +65879,7 @@ p -= 1; end
65879
65879
  end
65880
65880
  elsif @statement.relationship == :hasMembers
65881
65881
  @statement.object.arguments.each do |arg|
65882
- statement = BEL::Model::Statement.new(
65882
+ statement = BEL::Nanopub::Statement.new(
65883
65883
  @statement.subject, :hasMember, arg, @statement.comment
65884
65884
  )
65885
65885
  statement.annotations = @statement.annotations
@@ -65920,7 +65920,7 @@ n = 0 end
65920
65920
 
65921
65921
  if @statement.relationship == :hasComponents
65922
65922
  @statement.object.arguments.each do |arg|
65923
- statement = BEL::Model::Statement.new(
65923
+ statement = BEL::Nanopub::Statement.new(
65924
65924
  @statement.subject, :hasComponent, arg, @statement.comment
65925
65925
  )
65926
65926
  statement.annotations = @statement.annotations
@@ -65928,7 +65928,7 @@ n = 0 end
65928
65928
  end
65929
65929
  elsif @statement.relationship == :hasMembers
65930
65930
  @statement.object.arguments.each do |arg|
65931
- statement = BEL::Model::Statement.new(
65931
+ statement = BEL::Nanopub::Statement.new(
65932
65932
  @statement.subject, :hasMember, arg, @statement.comment
65933
65933
  )
65934
65934
  statement.annotations = @statement.annotations
@@ -65963,12 +65963,12 @@ n = 0 end
65963
65963
 
65964
65964
  ns =
65965
65965
  if @pfx
65966
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
65966
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
65967
65967
  else
65968
65968
  nil
65969
65969
  end
65970
65970
 
65971
- param = BEL::Model::Parameter.new(ns, val)
65971
+ param = BEL::Nanopub::Parameter.new(ns, val)
65972
65972
  @term_stack.last << param
65973
65973
 
65974
65974
  yield param
@@ -66018,12 +66018,12 @@ n = 0 end
66018
66018
 
66019
66019
  ns =
66020
66020
  if @pfx
66021
- @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil, nil)
66021
+ @namespaces[@pfx.to_sym] ||= BEL::Namespace::NamespaceDefinition.new(@pfx, nil)
66022
66022
  else
66023
66023
  nil
66024
66024
  end
66025
66025
 
66026
- param = BEL::Model::Parameter.new(ns, val)
66026
+ param = BEL::Nanopub::Parameter.new(ns, val)
66027
66027
  @term_stack.last << param
66028
66028
 
66029
66029
  yield param