bel 0.3.1-x64-mingw32 → 0.3.2-x64-mingw32
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- checksums.yaml +5 -13
- data/README.md +13 -1
- data/bel.gemspec +4 -1
- data/bin/bel +1 -0
- data/bin/bel2rdf.rb +2 -2
- data/bin/bel_compare.rb +2 -2
- data/bin/bel_parse.rb +1 -1
- data/bin/bel_summarize.rb +1 -1
- data/bin/bel_upgrade.rb +2 -2
- data/lib/bel/2.0/libbel.so +0 -0
- data/lib/bel/2.1/libbel.so +0 -0
- data/lib/bel/2.2/libbel.so +0 -0
- data/lib/bel/evidence_model/bel_parameter.rb +1 -1
- data/lib/bel/evidence_model/bel_term.rb +48 -1
- data/lib/bel/extensions/jgf.rb +5 -3
- data/lib/bel/extensions/rdf/bel_rdf.rb +93 -77
- data/lib/bel/extensions/rdf/rdf.rb +247 -11
- data/lib/bel/namespace.rb +16 -4
- data/lib/bel/nonblocking_io_wrapper.rb +52 -0
- data/lib/bel/script.rb +138159 -138382
- data/lib/bel/version.rb +1 -1
- metadata +112 -69
data/lib/bel/version.rb
CHANGED
metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: bel
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.3.
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4
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+
version: 0.3.2
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5
5
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platform: x64-mingw32
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6
6
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authors:
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7
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- Anthony Bargnesi
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@@ -11,7 +11,7 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2015-
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14
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+
date: 2015-07-31 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: ffi
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@@ -28,7 +28,7 @@ dependencies:
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- !ruby/object:Gem::Version
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version: 1.9.8
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- !ruby/object:Gem::Dependency
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-
name:
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+
name: addressable
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ~>
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@@ -42,21 +42,21 @@ dependencies:
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- !ruby/object:Gem::Version
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version: '2.3'
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- !ruby/object:Gem::Dependency
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-
name:
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45
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+
name: rdf
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ~>
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- !ruby/object:Gem::Version
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-
version: '
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+
version: '1.1'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ~>
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- !ruby/object:Gem::Version
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-
version: '
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+
version: '1.1'
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- !ruby/object:Gem::Dependency
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-
name: rdf
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+
name: rdf-turtle
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ~>
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@@ -70,19 +70,61 @@ dependencies:
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- !ruby/object:Gem::Version
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version: '1.1'
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- !ruby/object:Gem::Dependency
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-
name:
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+
name: uuid
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ~>
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- !ruby/object:Gem::Version
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-
version: '
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+
version: '2.3'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ~>
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- !ruby/object:Gem::Version
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-
version: '
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85
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+
version: '2.3'
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86
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+
- !ruby/object:Gem::Dependency
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+
name: byebug
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88
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+
requirement: !ruby/object:Gem::Requirement
|
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+
requirements:
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90
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+
- - ~>
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+
- !ruby/object:Gem::Version
|
92
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+
version: '5.0'
|
93
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+
type: :development
|
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+
prerelease: false
|
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+
version_requirements: !ruby/object:Gem::Requirement
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+
requirements:
|
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+
- - ~>
|
98
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+
- !ruby/object:Gem::Version
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+
version: '5.0'
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100
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+
- !ruby/object:Gem::Dependency
|
101
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+
name: minitest
|
102
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+
requirement: !ruby/object:Gem::Requirement
|
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+
requirements:
|
104
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+
- - ~>
|
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+
- !ruby/object:Gem::Version
|
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+
version: '5.7'
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+
type: :development
|
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+
prerelease: false
|
109
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+
version_requirements: !ruby/object:Gem::Requirement
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+
requirements:
|
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+
- - ~>
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+
- !ruby/object:Gem::Version
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+
version: '5.7'
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+
- !ruby/object:Gem::Dependency
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+
name: pry-byebug
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+
requirement: !ruby/object:Gem::Requirement
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requirements:
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+
- - ~>
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+
- !ruby/object:Gem::Version
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+
version: '3.2'
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+
type: :development
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+
prerelease: false
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+
version_requirements: !ruby/object:Gem::Requirement
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+
requirements:
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+
- - ~>
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+
- !ruby/object:Gem::Version
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+
version: '3.2'
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86
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- !ruby/object:Gem::Dependency
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name: rake
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requirement: !ruby/object:Gem::Requirement
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@@ -153,7 +195,7 @@ dependencies:
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- - ~>
|
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- !ruby/object:Gem::Version
|
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197
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version: '0.8'
|
156
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-
description:
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198
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+
description: ' The BEL gem allows the reading, writing, and processing of BEL (Biological
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157
199
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Expression Language) with a natural DSL. '
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email:
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- abargnesi@selventa.com
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@@ -171,77 +213,78 @@ executables:
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171
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extensions: []
|
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extra_rdoc_files: []
|
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files:
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174
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-
- INSTALL.md
|
175
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-
- INSTALL_RUBY.md
|
176
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-
- LICENSE
|
177
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-
- README.md
|
178
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-
- bel.gemspec
|
179
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-
- bin/bel
|
180
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-
- bin/bel2rdf.rb
|
181
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-
- bin/bel_compare.rb
|
182
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-
- bin/bel_parse.rb
|
183
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-
- bin/bel_rdfschema.rb
|
184
|
-
- bin/bel_summarize.rb
|
185
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-
- bin/bel_upgrade.rb
|
186
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-
- ext/mri/bel-ast.c
|
187
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-
- ext/mri/bel-ast.h
|
188
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-
- ext/mri/bel-node-stack.c
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-
- ext/mri/bel-node-stack.h
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-
- ext/mri/bel-parse-statement.c
|
191
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-
- ext/mri/bel-parse-term.c
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-
- ext/mri/bel-parser.c
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-
- ext/mri/bel-parser.h
|
194
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-
- ext/mri/bel-token.c
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195
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-
- ext/mri/bel-token.h
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196
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-
- ext/mri/bel-tokenize-term.c
|
197
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-
- ext/mri/extconf.rb
|
198
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-
- ext/mri/libbel.c
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199
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-
- ext/mri/libbel.def
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216
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- lib/bel.rb
|
201
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-
- lib/bel/
|
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-
- lib/bel/2.1/libbel.so
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203
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-
- lib/bel/2.2/libbel.so
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204
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-
- lib/bel/completion.rb
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205
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-
- lib/bel/completion_rule.rb
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206
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-
- lib/bel/evidence_model.rb
|
207
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-
- lib/bel/evidence_model/bel_parameter.rb
|
217
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+
- lib/bel/util.rb
|
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218
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- lib/bel/evidence_model/bel_statement.rb
|
209
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-
- lib/bel/evidence_model/bel_term.rb
|
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219
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- lib/bel/evidence_model/citation.rb
|
211
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-
- lib/bel/evidence_model/
|
212
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-
- lib/bel/evidence_model/experiment_context.rb
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+
- lib/bel/evidence_model/bel_parameter.rb
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221
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- lib/bel/evidence_model/metadata.rb
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-
- lib/bel/evidence_model/
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+
- lib/bel/evidence_model/bel_term.rb
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223
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- lib/bel/evidence_model/summary_text.rb
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216
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-
- lib/bel/
|
224
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+
- lib/bel/evidence_model/evidence.rb
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225
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+
- lib/bel/evidence_model/references.rb
|
226
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+
- lib/bel/evidence_model/experiment_context.rb
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+
- lib/bel/evidence_model.rb
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+
- lib/bel/nonblocking_io_wrapper.rb
|
217
229
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- lib/bel/extension_format.rb
|
230
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+
- lib/bel/script.rb
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231
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+
- lib/bel/extensions/rdf/bel_rdf.rb
|
232
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+
- lib/bel/extensions/rdf/rdf.rb
|
218
233
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- lib/bel/extensions/bel.rb
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219
234
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- lib/bel/extensions/jgf.rb
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220
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-
- lib/bel/extensions/json/jrjackson.rb
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221
235
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- lib/bel/extensions/json/json.rb
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236
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- lib/bel/extensions/json/multi_json.rb
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-
- lib/bel/extensions/json/oj.rb
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237
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- lib/bel/extensions/json/ruby_json.rb
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225
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-
- lib/bel/extensions/
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-
- lib/bel/extensions/
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+
- lib/bel/extensions/json/jrjackson.rb
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+
- lib/bel/extensions/json/oj.rb
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240
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- lib/bel/extensions/xbel.rb
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-
- lib/bel/
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-
- lib/bel/
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-
- lib/bel/libbel.rb
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-
- lib/bel/libbel/bel_ast_structs.rb
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232
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-
- lib/bel/libbel/bel_token.rb
|
233
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-
- lib/bel/libbel/bel_token_iterator.rb
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+
- lib/bel/extension.rb
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242
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+
- lib/bel/libbel/node_traversal.rb
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243
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+
- lib/bel/libbel/node_transformation.rb
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244
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- lib/bel/libbel/bel_token_list.rb
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+
- lib/bel/libbel/bel_token.rb
|
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246
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- lib/bel/libbel/node_test.rb
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-
- lib/bel/libbel/
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-
- lib/bel/libbel/
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-
- lib/bel/
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+
- lib/bel/libbel/bel_ast_structs.rb
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+
- lib/bel/libbel/bel_token_iterator.rb
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+
- lib/bel/completion_rule.rb
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- lib/bel/parser.rb
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-
- lib/bel/quoting.rb
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-
- lib/bel/script.rb
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-
- lib/bel/util.rb
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-
- lib/bel/vendor/trollop.rb
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- lib/bel/version.rb
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+
- lib/bel/format.rb
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+
- lib/bel/namespace.rb
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+
- lib/bel/vendor/trollop.rb
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+
- lib/bel/libbel.rb
|
256
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+
- lib/bel/language.rb
|
257
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+
- lib/bel/quoting.rb
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+
- lib/bel/completion.rb
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+
- ext/mri/bel-token.c
|
260
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+
- ext/mri/libbel.c
|
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+
- ext/mri/bel-parse-term.c
|
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+
- ext/mri/bel-node-stack.c
|
263
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+
- ext/mri/bel-parser.c
|
264
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+
- ext/mri/bel-parse-statement.c
|
265
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+
- ext/mri/bel-tokenize-term.c
|
266
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+
- ext/mri/bel-ast.c
|
267
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+
- ext/mri/bel-parser.h
|
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+
- ext/mri/bel-node-stack.h
|
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+
- ext/mri/bel-token.h
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270
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+
- ext/mri/bel-ast.h
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+
- ext/mri/libbel.def
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+
- bel.gemspec
|
273
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+
- LICENSE
|
274
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+
- INSTALL.md
|
275
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+
- INSTALL_RUBY.md
|
276
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+
- README.md
|
277
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+
- bin/bel_summarize.rb
|
278
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+
- bin/bel_upgrade.rb
|
279
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+
- bin/bel_parse.rb
|
280
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+
- bin/bel
|
281
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+
- bin/bel2rdf.rb
|
282
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+
- bin/bel_compare.rb
|
283
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+
- bin/bel_rdfschema.rb
|
284
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+
- ext/mri/extconf.rb
|
285
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+
- lib/bel/2.0/libbel.so
|
286
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+
- lib/bel/2.1/libbel.so
|
287
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+
- lib/bel/2.2/libbel.so
|
245
288
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homepage: https://github.com/OpenBEL/bel.rb
|
246
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licenses:
|
247
290
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- Apache-2.0
|
@@ -271,17 +314,17 @@ require_paths:
|
|
271
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- lib
|
272
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required_ruby_version: !ruby/object:Gem::Requirement
|
273
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requirements:
|
274
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-
- -
|
317
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+
- - '>='
|
275
318
|
- !ruby/object:Gem::Version
|
276
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|
version: 2.0.0
|
277
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required_rubygems_version: !ruby/object:Gem::Requirement
|
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requirements:
|
279
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-
- -
|
322
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+
- - '>='
|
280
323
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- !ruby/object:Gem::Version
|
281
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version: '0'
|
282
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requirements: []
|
283
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|
rubyforge_project:
|
284
|
-
rubygems_version: 2.
|
327
|
+
rubygems_version: 2.0.14
|
285
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signing_key:
|
286
329
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specification_version: 4
|
287
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summary: Process BEL with ruby.
|