bel 0.3.0.beta2 → 0.3.0.beta3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/bel.gemspec +3 -5
- data/lib/bel.rb +1 -0
- data/lib/bel/version.rb +3 -0
- data/lib/libbel.rb +48 -9
- metadata +73 -94
checksums.yaml
ADDED
@@ -0,0 +1,7 @@
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---
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SHA1:
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metadata.gz: 1e2c14f81c221242a5a14c473220410c36a4af27
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data.tar.gz: 83b4cd6dea6ccadc861d1e708106a3b4fde574f6
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SHA512:
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metadata.gz: 2f8bb3efbd5c10f13f80e786aa8fc935607c42dac905923c13e085f456ad2b952b30fee1e436a4add5aa4787ab52863427848867cffb72659ec998aa81816f89
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7
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data.tar.gz: dac427227db2d9fc47b1fb13c9dbc055eca3ac7a8fc28c1929c1d0a8cc56ca5ecfe44e9fe614f5351089710867ba4c0260badc3c821e9926ba6f88087088e322
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data/bel.gemspec
CHANGED
@@ -1,6 +1,6 @@
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Gem::Specification.new do |spec|
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spec.name = 'bel'
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spec.version = '0.3.0.
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spec.version = '0.3.0.beta3'
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spec.summary = '''
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Process BEL with ruby.
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'''.gsub(%r{^\s+}, ' ').gsub(%r{\n}, '')
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@@ -48,9 +48,7 @@ Gem::Specification.new do |spec|
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spec.required_ruby_version = '>= 1.9.2'
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# runtime
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-
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-
# - before upgrading check each platform gem is present in the new version
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spec.add_dependency 'ffi', '1.9.6'
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spec.add_dependency 'ffi', '1.9.8'
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# test rdf functionality
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spec.add_development_dependency 'uuid', '~> 2.3'
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@@ -61,9 +59,9 @@ Gem::Specification.new do |spec|
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spec.add_development_dependency 'bundler', '~> 1.7'
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spec.add_development_dependency 'rake', '~> 10.4'
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spec.add_development_dependency 'rake-compiler', '~> 0.9'
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spec.add_development_dependency 'rdoc', '~> 4.2'
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spec.add_development_dependency 'rspec', '~> 3.2'
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spec.add_development_dependency 'yard', '~> 0.8'
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spec.add_development_dependency 'rdoc', '~> 4.2'
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end
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# vim: ts=2 sw=2:
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# encoding: utf-8
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data/lib/bel.rb
CHANGED
data/lib/bel/version.rb
ADDED
data/lib/libbel.rb
CHANGED
@@ -6,6 +6,34 @@ module LibBEL
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defined?(RUBY_ENGINE) && ("rbx" == RUBY_ENGINE)
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end
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# @api_private
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# Determines the correct extension path for your ruby version
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def extension_path(ruby_version = RUBY_VERSION)
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version =
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case ruby_version
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when %r{1\.9}
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'1.9'
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when %r{2\.0}
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'2.0'
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when %r{2\.1}
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'2.1'
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when %r{2\.2}
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'2.1' # 2.2 is compatible with 2.1, but cannot cross compile 2.2
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else
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fail RuntimeError.new("Do not support Ruby #{RUBY_VERSION}.")
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end
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extension_path = File.join(
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File.expand_path(File.dirname(__FILE__)),
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version
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)
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if !File.readable?(extension_path)
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msg = "Extension path cannot be read: #{extension_path}"
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fail IOError.new(msg)
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end
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extension_path
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end
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# @api_private
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# Determine FFI constant for this ruby engine.
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def find_ffi
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end
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# @api_private
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# Loads the
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# Loads the libbel shared library.
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def load_libBEL
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ffi_module = find_ffi
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extend ffi_module::Library
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# libbel.bundle: Mac OSX
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messages = []
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library_loaded = ['libbel.so', 'libbel.bundle'].map { |library_file|
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-
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-
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-
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-
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-
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[
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library_file,
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File.join(
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File.expand_path(File.dirname(__FILE__)),
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library_file
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)
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]
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}.any? do |library_file, library_path|
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# Try loading top-level shared library.
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begin
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ffi_lib library_path
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true
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rescue LoadError =>
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-
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-
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rescue LoadError => exception1
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# Try loading version-specific shared library.
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begin
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ffi_lib File.join(extension_path, library_file)
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true
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rescue LoadError => exception2
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messages << exception1.to_s
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messages << exception2.to_s
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false
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end
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end
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end
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metadata
CHANGED
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--- !ruby/object:Gem::Specification
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name: bel
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version: !ruby/object:Gem::Version
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version: 0.3.0.
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prerelease: 6
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version: 0.3.0.beta3
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platform: ruby
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authors:
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- Anthony Bargnesi
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2015-03-
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date: 2015-03-16 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: ffi
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - '='
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- !ruby/object:Gem::Version
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version: 1.9.
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version: 1.9.8
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - '='
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- !ruby/object:Gem::Version
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version: 1.9.
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version: 1.9.8
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- !ruby/object:Gem::Dependency
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name: uuid
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '2.3'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '2.3'
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- !ruby/object:Gem::Dependency
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name: addressable
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '2.3'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '2.3'
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- !ruby/object:Gem::Dependency
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name: rdf
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.1'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.1'
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- !ruby/object:Gem::Dependency
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name: bundler
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.7'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.7'
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- !ruby/object:Gem::Dependency
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name: rake
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '10.4'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '10.4'
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- !ruby/object:Gem::Dependency
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name: rake-compiler
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '0.9'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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+
- - "~>"
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- !ruby/object:Gem::Version
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version: '0.9'
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- !ruby/object:Gem::Dependency
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name:
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name: rdoc
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '
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version: '4.2'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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+
- - "~>"
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- !ruby/object:Gem::Version
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version: '
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version: '4.2'
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- !ruby/object:Gem::Dependency
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name:
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name: rspec
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '
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version: '3.2'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '
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version: '3.2'
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- !ruby/object:Gem::Dependency
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name:
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name: yard
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '
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version: '0.8'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '
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-
description:
|
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-
Expression Language) with a natural DSL.
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version: '0.8'
|
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description: " The BEL gem allows the reading, writing, and processing of BEL (Biological
|
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+
Expression Language) with a natural DSL. "
|
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email:
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- abargnesi@selventa.com
|
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- ncatlett@selventa.com
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@@ -193,54 +172,56 @@ extensions:
|
|
193
172
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- ext/mri/extconf.rb
|
194
173
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extra_rdoc_files: []
|
195
174
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files:
|
196
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-
- lib/util.rb
|
197
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-
- lib/libbel.rb
|
198
|
-
- lib/bel/quoting.rb
|
199
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-
- lib/bel/rdf.rb
|
200
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-
- lib/bel/completion.rb
|
201
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-
- lib/bel/completion_rule.rb
|
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-
- lib/bel/script.rb
|
203
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-
- lib/bel/language.rb
|
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-
- lib/bel/namespace.rb
|
205
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-
- lib/features.rb
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206
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-
- lib/bel.rb
|
207
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-
- ext/mri/bel-token.c
|
208
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-
- ext/mri/bel-ast.c
|
209
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-
- ext/mri/bel-tokenize-term.c
|
210
|
-
- ext/mri/libbel.c
|
211
|
-
- ext/mri/bel-parser.c
|
212
|
-
- ext/mri/bel-parse-statement.c
|
213
|
-
- ext/mri/bel-parse-term.c
|
214
|
-
- ext/mri/bel-node-stack.c
|
215
|
-
- ext/mri/bel-token.h
|
216
|
-
- ext/mri/bel-node-stack.h
|
217
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-
- ext/mri/bel-parser.h
|
218
|
-
- ext/mri/bel-ast.h
|
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-
- ext/mri/libbel.def
|
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-
- bel.gemspec
|
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|
-
- LICENSE
|
222
175
|
- INSTALL.md
|
223
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- INSTALL_RUBY.md
|
177
|
+
- LICENSE
|
224
178
|
- README.md
|
225
|
-
-
|
226
|
-
- bin/bel_rdfschema
|
227
|
-
- bin/bel_upgrade_term
|
179
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+
- bel.gemspec
|
228
180
|
- bin/bel2rdf
|
229
|
-
- bin/bel_parse
|
230
181
|
- bin/bel_compare
|
182
|
+
- bin/bel_parse
|
183
|
+
- bin/bel_rdfschema
|
184
|
+
- bin/bel_summarize
|
231
185
|
- bin/bel_upgrade
|
186
|
+
- bin/bel_upgrade_term
|
187
|
+
- ext/mri/bel-ast.c
|
188
|
+
- ext/mri/bel-ast.h
|
189
|
+
- ext/mri/bel-node-stack.c
|
190
|
+
- ext/mri/bel-node-stack.h
|
191
|
+
- ext/mri/bel-parse-statement.c
|
192
|
+
- ext/mri/bel-parse-term.c
|
193
|
+
- ext/mri/bel-parser.c
|
194
|
+
- ext/mri/bel-parser.h
|
195
|
+
- ext/mri/bel-token.c
|
196
|
+
- ext/mri/bel-token.h
|
197
|
+
- ext/mri/bel-tokenize-term.c
|
232
198
|
- ext/mri/extconf.rb
|
199
|
+
- ext/mri/libbel.c
|
200
|
+
- ext/mri/libbel.def
|
201
|
+
- lib/bel.rb
|
202
|
+
- lib/bel/completion.rb
|
203
|
+
- lib/bel/completion_rule.rb
|
204
|
+
- lib/bel/language.rb
|
205
|
+
- lib/bel/namespace.rb
|
206
|
+
- lib/bel/quoting.rb
|
207
|
+
- lib/bel/rdf.rb
|
208
|
+
- lib/bel/script.rb
|
209
|
+
- lib/bel/version.rb
|
210
|
+
- lib/features.rb
|
211
|
+
- lib/libbel.rb
|
212
|
+
- lib/util.rb
|
233
213
|
homepage: https://github.com/OpenBEL/bel.rb
|
234
214
|
licenses:
|
235
215
|
- Apache-2.0
|
216
|
+
metadata: {}
|
236
217
|
post_install_message:
|
237
218
|
rdoc_options:
|
238
|
-
- --title
|
219
|
+
- "--title"
|
239
220
|
- BEL Ruby Documentation
|
240
|
-
- --main
|
221
|
+
- "--main"
|
241
222
|
- README.md
|
242
|
-
- --line-numbers
|
243
|
-
- --exclude
|
223
|
+
- "--line-numbers"
|
224
|
+
- "--exclude"
|
244
225
|
- lib/bel/script.rb
|
245
226
|
- README.md
|
246
227
|
- INSTALL.md
|
@@ -249,22 +230,20 @@ rdoc_options:
|
|
249
230
|
require_paths:
|
250
231
|
- lib
|
251
232
|
required_ruby_version: !ruby/object:Gem::Requirement
|
252
|
-
none: false
|
253
233
|
requirements:
|
254
|
-
- -
|
234
|
+
- - ">="
|
255
235
|
- !ruby/object:Gem::Version
|
256
236
|
version: 1.9.2
|
257
237
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
258
|
-
none: false
|
259
238
|
requirements:
|
260
|
-
- -
|
239
|
+
- - ">"
|
261
240
|
- !ruby/object:Gem::Version
|
262
241
|
version: 1.3.1
|
263
242
|
requirements: []
|
264
243
|
rubyforge_project:
|
265
|
-
rubygems_version:
|
244
|
+
rubygems_version: 2.2.2
|
266
245
|
signing_key:
|
267
|
-
specification_version:
|
246
|
+
specification_version: 4
|
268
247
|
summary: Process BEL with ruby.
|
269
248
|
test_files: []
|
270
249
|
has_rdoc:
|