bel-search-sqlite 0.4.0 → 0.4.2

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Files changed (6) hide show
  1. checksums.yaml +4 -4
  2. data/.gemspec +2 -1
  3. data/CHANGELOG.md +12 -1
  4. data/lib/bel/resource/search/plugins/sqlite/sqlite3.rb +7 -6
  5. data/lib/bel/resource/search/plugins/sqlite/sqlite3_template.erb +4 -0
  6. metadata +17 -2
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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- metadata.gz: 5293683a9d227710257ccc18b90d4b0b0facfe79
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- data.tar.gz: 0ea715f709440efba97d0c0ab3c09e5dc06fef70
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+ metadata.gz: 5d0b288c14099de5c0981922e429fcac0245b4d6
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+ data.tar.gz: 205040f5df8000eccd882a5538501651fcd60017
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  SHA512:
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- metadata.gz: 8b75d1a25c878846f5bd52fffccccee56ab82188dc36031511841a686e9b1ef4d38cd23991e5cc2cfab55e08cf985cff0e337d01de391b01b5a7b93a008f3c81
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- data.tar.gz: 59b6e75a6683e22cee8ca386eff2194fab4ae9bc339c75af9c349a95842b7ba8622d98f84c174a3f3b6f3f1d4154f4d8f5811854efecd73586bbb165b5e378f3
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+ metadata.gz: 6af5cb895fccad063cf65cd6d26c05d0d63dc18a098a07ad938079f1b82a7e7ebc1bcac29c2f5c1b1a5157a0c959c6b0dfd4f41b61d409145443da2a28f1c62f
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+ data.tar.gz: d5c795cd27fd76f41237ef9d879ab3f2360c20b73ec449dceba3e5efc6fa87cd3963b0851e22ac217dd7dc3f8293360ef9a682215eea7027c1977b9c87c99ea3
data/.gemspec CHANGED
@@ -1,6 +1,6 @@
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  Gem::Specification.new do |spec|
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  spec.name = 'bel-search-sqlite'
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- spec.version = '0.4.0'
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+ spec.version = '0.4.2'
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  spec.summary = '''
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  Resource search plugin for bel.rb using Sqlite FTS.
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  '''.gsub(%r{^\s+}, ' ').gsub(%r{\n}, '')
@@ -38,6 +38,7 @@ Gem::Specification.new do |spec|
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  spec.platform = 'ruby'
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  spec.required_ruby_version = '>= 2.0.0'
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+ spec.add_runtime_dependency 'bel', '~> 0.4'
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  spec.add_runtime_dependency 'sequel', '4.28.0'
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  spec.add_runtime_dependency 'sqlite3', '1.3.11'
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  spec.post_install_message = %Q{
data/CHANGELOG.md CHANGED
@@ -3,6 +3,17 @@ All notable changes to bel-search-sqlite will be documented in this file. The cu
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  This project adheres to [Semantic Versioning](http://semver.org/).
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- ## [0.4.0][0.4.0] - 2015-12-14
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+ ## [0.4.2][0.4.2] - 2015-12-17
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+ ### Added
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+ - Added the :exclude_identifier_schemes option to search for concepts where their preferred label is not an identifier. This was added to allows more human-friendly biological identifiers to be returned.
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+ - Allow [bel.rb][bel.rb] gem dependency within version range 0.4.x < 0.5 (pessimistic version qualifier).
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+
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+ ## [0.4.1][0.4.1] - 2015-12-17
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+ ### Note
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+ - Yanked this version. Dependency on bel.rb was incorrect.
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+
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+ ## 0.4.0 - 2015-12-14
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  ### Added
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  - Added full-text-search of annotations and namespaces using SQLite. This implementation provides a solution for CRuby and JRuby using the wonderful "sequel" gem.
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+
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+ [0.4.2]: https://github.com/OpenBEL/bel.rb-search-sqlite/compare/0.4.0...0.4.2
data/lib/bel/resource/search/plugins/sqlite/sqlite3.rb CHANGED
@@ -31,12 +31,13 @@ module BEL::Resource::Search::Plugins
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  # optional SQL parameters
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  params = {
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- :match => query_expression.encode('UTF-8'),
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- :start => (options.delete(:start) || 0).to_i,
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- :size => size,
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- :concept_type => (concept_type ? concept_type.to_s.encode('UTF-8') : nil),
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- :scheme_uri => (scheme_uri ? scheme_uri.to_s.encode('UTF-8') : nil),
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- :species => (species ? species.to_s.encode('UTF-8') : nil),
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+ :match => query_expression.encode('UTF-8'),
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+ :start => (options.delete(:start) || 0).to_i,
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+ :size => size,
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+ :concept_type => (concept_type ? concept_type.to_s.encode('UTF-8') : nil),
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+ :scheme_uri => (scheme_uri ? scheme_uri.to_s.encode('UTF-8') : nil),
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+ :species => (species ? species.to_s.encode('UTF-8') : nil),
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+ :exclude_identifier_schemes => options.delete(:exclude_identifier_schemes)
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  }
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  query = QUERY_TEMPLATE.result(binding)
data/lib/bel/resource/search/plugins/sqlite/sqlite3_template.erb CHANGED
@@ -12,6 +12,10 @@ WHERE
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  <% end %>
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  <% end %>
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+
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+ <% if params[:exclude_identifier_schemes] %>
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+ AND identifier != pref_label
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+ <% end %>
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  ORDER BY
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  length(pref_label) ASC
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  LIMIT :size
metadata CHANGED
@@ -1,15 +1,29 @@
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  --- !ruby/object:Gem::Specification
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  name: bel-search-sqlite
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  version: !ruby/object:Gem::Version
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- version: 0.4.0
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+ version: 0.4.2
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  platform: ruby
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  authors:
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  - Anthony Bargnesi
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2015-12-14 00:00:00.000000000 Z
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+ date: 2015-12-17 00:00:00.000000000 Z
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  dependencies:
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+ - !ruby/object:Gem::Dependency
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '0.4'
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+ name: bel
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+ prerelease: false
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+ type: :runtime
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: '0.4'
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  - !ruby/object:Gem::Dependency
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
@@ -112,3 +126,4 @@ signing_key:
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  specification_version: 4
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  summary: Resource search plugin for bel.rb using Sqlite FTS.
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  test_files: []
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+ has_rdoc: