bayesnet 0.0.1 → 0.1.0
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- checksums.yaml +4 -4
- data/.ruby-version +1 -1
- data/CHANGELOG.md +16 -1
- data/Gemfile +1 -1
- data/Gemfile.lock +6 -29
- data/README.md +68 -6
- data/Rakefile +5 -2
- data/bayesnet.gemspec +1 -2
- data/doc/morning-mood-model.png +0 -0
- data/lib/bayesnet/dsl.rb +4 -0
- data/lib/bayesnet/error.rb +2 -0
- data/lib/bayesnet/factor.rb +47 -33
- data/lib/bayesnet/graph.rb +24 -8
- data/lib/bayesnet/node.rb +16 -4
- data/lib/bayesnet/parsers/bif.rb +2484 -0
- data/lib/bayesnet/parsers/bif.treetop +250 -0
- data/lib/bayesnet/parsers/builder.rb +37 -0
- data/lib/bayesnet/version.rb +1 -1
- data/lib/bayesnet.rb +5 -0
- metadata +8 -18
@@ -0,0 +1,250 @@
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require "treetop"
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module Bayesnet
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module Parsers
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grammar Bif
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include Bayesnet::Parsers::Builder
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7
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rule CompilationUnit
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SEP NetworkDeclaration list:( VariableDeclaration / ProbabilityDeclaration )* SEP {
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def nodes
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list.elements.select { |e| e.respond_to?(:node) }.map(&:node)
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end
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def cpts
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list.elements.select { |e| e.respond_to?(:cpt) }.map(&:cpt)
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end
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}
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end
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rule NetworkDeclaration
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SEP NETWORK SEP WORD SEP NetworkContent SEP
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end
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rule NetworkContent
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SEP "{" ( SEP Property )* SEP "}" SEP
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end
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rule VariableDeclaration
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SEP VARIABLE SEP probabilityVariableName SEP variableContent SEP {
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def node
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values = variableContent.values
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[probabilityVariableName.text_value.to_sym, values]
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end
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}
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end
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rule variableContent
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SEP "{" list:(SEP Property / variableDiscrete )* SEP "}" SEP {
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def values
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list.elements.select { |e| e.respond_to?(:values) }.map(&:values).flatten
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end
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}
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end
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rule variableDiscrete
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SEP VARIABLETYPE SEP DISCRETE SEP "[" SEP DECIMAL_LITERAL SEP "]" SEP "{" SEP variableValuesList SEP "}" SEP ";" SEP {
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def values
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variableValuesList.values
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end
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}
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end
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rule variableValuesList
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SEP probabilityVariableValue list:( SEP probabilityVariableValue )* {
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def values
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[probabilityVariableValue.value] + list.elements.map { |e| e.elements[1].value }.flatten
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end
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}
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end
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rule probabilityVariableValue
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VALUE {
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def value
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self.text_value.to_sym
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end
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}
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end
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rule ProbabilityDeclaration
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SEP PROBABILITY SEP probabilityVariablesList SEP probabilityContent SEP {
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def cpt
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{ variable: probabilityVariablesList.value,
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parents: probabilityVariablesList.parents,
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cpt: probabilityContent.cpt}
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end
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}
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end
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rule probabilityVariablesList
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SEP "(" SEP probabilityVariableName list:( SEP probabilityVariableName )* SEP ")" SEP {
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def value
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probabilityVariableName.value
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end
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def parents
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list.elements.map { |e| e.elements[1].value }.flatten
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end
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}
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end
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rule probabilityVariableName
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WORD {
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def value
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self.text_value.to_sym
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end
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}
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end
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rule probabilityContent
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SEP "{" SEP list:( SEP Property / ProbabilityDefaultEntry / ProbabilityEntry / ProbabilityTable )* SEP "}" SEP {
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def cpt
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distributions = list.elements.select { |e| e.respond_to?(:given) }.map do |e|
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{given: e.given,
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distribution: e.distribution}
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end
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table = list.elements.select { |e| e.respond_to?(:table) }.map do |e|
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{table: e.table}
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end
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if distributions.empty? && !table.empty?
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return table.first
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elsif !distributions.empty? && table.empty?
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return distributions
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elsif distributions.empty? && table.empty?
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raise "Either distributions or table must be provided"
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else
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raise "Both - distributions or table cannot be provided at the same time"
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end
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end
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}
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end
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rule ProbabilityEntry
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SEP probabilityValuesList SEP floatingPointList SEP ";" SEP {
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def given
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probabilityValuesList.values
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end
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def distribution
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floatingPointList.values
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end
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}
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end
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rule probabilityValuesList
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SEP "(" SEP probabilityVariableValue list:( SEP probabilityVariableValue )* SEP ")" {
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def values
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[probabilityVariableValue.value] + list.elements.map { |e| e.elements[1].value }
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end
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}
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end
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rule ProbabilityDefaultEntry
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SEP floatingPointList SEP ";" SEP {
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def values
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floatingPointList.values
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end
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}
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end
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rule ProbabilityTable
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SEP TABLEVALUE SEP floatingPointList SEP ";" SEP {
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def table
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floatingPointList.values
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end
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}
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end
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rule floatingPointList
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SEP floatingPointToken list:( SEP floatingPointToken )* {
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def values
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[floatingPointToken.value] + list.elements.map {|e| e.elements[1]}.select { |e| e.respond_to?(:value) }.map(&:value)
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end
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}
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end
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rule floatingPointToken
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FLOATING_POINT_LITERAL {
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def value
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self.text_value.to_f
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end
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}
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end
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rule Property
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PROPERTYSTRING
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end
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rule NETWORK
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'network'
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end
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rule VARIABLE
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'variable'
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end
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rule PROBABILITY
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'probability'
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end
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rule PROPERTY
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'property'
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end
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rule VARIABLETYPE
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'type'
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end
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rule DISCRETE
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'discrete'
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end
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rule DEFAULTVALUE
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'default'
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end
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rule TABLEVALUE
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'table'
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end
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rule WORD
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LETTER (LETTER / DIGIT)*
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end
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rule LETTER
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[a-zA-Z_-]
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end
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rule VALUE
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[/<>=.+a-zA-Z_0-9-]+
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end
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rule DIGIT
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[0-9]
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end
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rule DECIMAL_LITERAL
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DIGIT DIGIT*
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end
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rule FLOATING_POINT_LITERAL
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DIGIT+ '.' DIGIT* EXPONENT?
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/ '.' DIGIT+ EXPONENT?
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/ DIGIT+ EXPONENT
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end
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rule EXPONENT
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[eE] [+-]? DIGIT+
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end
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rule PROPERTYSTRING
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PROPERTY .* ';'
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end
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rule SEP
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[\r\n\t ,|]*
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end
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end
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end
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end
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@@ -0,0 +1,37 @@
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# lib/builder.rb
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module Bayesnet::Parsers
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module Builder
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def build(input)
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parsed = parse(input)
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nodes = parsed.nodes.to_h
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net = Bayesnet.define do
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end
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parsed.cpts.each do |cpt|
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variable = cpt[:variable]
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case cpt[:cpt]
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when Array
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net.node(variable, parents: cpt[:parents]) do
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values nodes[variable] do
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cpt[:cpt].each do |entry|
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as entry[:distribution], given: entry[:given]
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end
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end
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end
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when Hash
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raise 'Table CPT for variable with parents is not supported' unless cpt[:parents].empty?
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table = cpt[:cpt][:table]
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net.node(variable, parents: []) do
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values nodes[variable].zip(table).to_h
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end
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end
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end
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net.resolve_factors
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net
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end
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end
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end
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data/lib/bayesnet/version.rb
CHANGED
data/lib/bayesnet.rb
CHANGED
@@ -2,11 +2,16 @@
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3
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require "set"
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# net
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require_relative "bayesnet/dsl"
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require_relative "bayesnet/error"
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require_relative "bayesnet/factor"
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require_relative "bayesnet/version"
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# parsing
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require_relative "bayesnet/parsers/builder"
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require_relative "bayesnet/parsers/bif"
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module Bayesnet
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extend Bayesnet::DSL
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end
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metadata
CHANGED
@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: bayesnet
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3
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version: !ruby/object:Gem::Version
|
4
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-
version: 0.0
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version: 0.1.0
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5
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platform: ruby
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authors:
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- Aleksandr Furmanov
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autorequire:
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9
9
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bindir: exe
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cert_chain: []
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-
date:
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date: 2022-02-26 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
|
14
14
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name: m
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@@ -52,20 +52,6 @@ dependencies:
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52
52
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- - "~>"
|
53
53
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- !ruby/object:Gem::Version
|
54
54
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version: 3.9.0
|
55
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-
- !ruby/object:Gem::Dependency
|
56
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-
name: standard
|
57
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-
requirement: !ruby/object:Gem::Requirement
|
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-
requirements:
|
59
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-
- - "~>"
|
60
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-
- !ruby/object:Gem::Version
|
61
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-
version: '1.3'
|
62
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-
type: :development
|
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-
prerelease: false
|
64
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-
version_requirements: !ruby/object:Gem::Requirement
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-
requirements:
|
66
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-
- - "~>"
|
67
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-
- !ruby/object:Gem::Version
|
68
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-
version: '1.3'
|
69
55
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description:
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70
56
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email:
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71
57
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- aleksandr.furmanov@gmail.com
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@@ -85,12 +71,16 @@ files:
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85
71
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- bayesnet.gemspec
|
86
72
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- bin/console
|
87
73
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- bin/setup
|
74
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+
- doc/morning-mood-model.png
|
88
75
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- lib/bayesnet.rb
|
89
76
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- lib/bayesnet/dsl.rb
|
90
77
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- lib/bayesnet/error.rb
|
91
78
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- lib/bayesnet/factor.rb
|
92
79
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- lib/bayesnet/graph.rb
|
93
80
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- lib/bayesnet/node.rb
|
81
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+
- lib/bayesnet/parsers/bif.rb
|
82
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+
- lib/bayesnet/parsers/bif.treetop
|
83
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+
- lib/bayesnet/parsers/builder.rb
|
94
84
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- lib/bayesnet/version.rb
|
95
85
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homepage: https://github.com/afurmanov/bayesnet
|
96
86
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licenses:
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@@ -98,7 +88,7 @@ licenses:
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98
88
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metadata:
|
99
89
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homepage_uri: https://github.com/afurmanov/bayesnet
|
100
90
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source_code_uri: https://github.com/afurmanov/bayesnet
|
101
|
-
changelog_uri: https://github.com/afurmanov/bayesnet/blob/
|
91
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+
changelog_uri: https://github.com/afurmanov/bayesnet/blob/master/CHANGELOG.md
|
102
92
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post_install_message:
|
103
93
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rdoc_options: []
|
104
94
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require_paths:
|
@@ -114,7 +104,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
114
104
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- !ruby/object:Gem::Version
|
115
105
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version: '0'
|
116
106
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requirements: []
|
117
|
-
rubygems_version: 3.
|
107
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+
rubygems_version: 3.3.3
|
118
108
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signing_key:
|
119
109
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specification_version: 4
|
120
110
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summary: Byesian network DSL + inference API
|