bananomia 0.1.0 → 0.1.1

checksums.yaml

@@ -1,7 +1,7 @@
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data/.github/workflows/main.yml

@@ -10,7 +10,7 @@ jobs:
     - name: Set up Ruby
       uses: ruby/setup-ruby@v1
       with:
-        ruby-version: 3.1.3
+        ruby-version: 3.3.4
         bundler-cache: true
     - name: Run the default task
       run: bundle exec rake

data/.gitignore

@@ -6,4 +6,6 @@
 /doc/
 /pkg/
 /spec/reports/
-/tmp/
+/tmp/
+/logo
+Gemfile.lock

data/CHANGELOG.md

@@ -1,5 +1,10 @@
 ## [Unreleased]
 
+## [0.1.1] - 2024-09-11
+ - Updated documentation
+ - Removed Gemfile.lock
+ - Bumped development depency versions to avoid CVE-2024-43398
+
 ## [0.1.0] - 2022-01-20
 
 - Initial release

data/README.md

@@ -1,6 +1,8 @@
 # Bananomia
 
-This is a Ruby wrapper on the [Bionomia](https://bionomia.net) API. Code follow the spirit/approach of the Gem [serrano](https://github.com/sckott/serrano), and indeed much of the wrapping utility is copied 1:1 from that repo, thanks [@sckott](https://github.com/sckott).
+![Bananomia logo](https://github.com/SpeciesFileGroup/bananomia/assets/8573609/cb3f07e6-081f-4187-a11f-3aa1f8b24106)
+
+Bananomia is a Ruby wrapper on the [Bionomia](https://bionomia.net) API. Code follow the spirit/approach of the Gem [serrano](https://github.com/sckott/serrano), and indeed much of the wrapping utility is copied 1:1 from that repo, thanks [@sckott](https://github.com/sckott).
 
 ## Installation
 
@@ -105,7 +107,7 @@ Bananomia.occurrence('477976412') #  => JSON-LD object
 
 Parse authorships with names separated by `;` and each authorship set separated by `\r\n`:
 ```ruby
-Bananomia.parse(names: 'Henry Robert Nicollon des Abbayes; Groom Q\r\nMrs. John Errol Chandos Aberdeen') #  => MultiJson object
+Bananomia.parse('Henry Robert Nicollon des Abbayes; Groom Q\r\nMrs. John Errol Chandos Aberdeen') #  => MultiJson object
 ```
 
 ---
@@ -114,7 +116,7 @@ Bananomia.parse(names: 'Henry Robert Nicollon des Abbayes; Groom Q\r\nMrs. John
 
 After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake test` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment.
 
-To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and the created tag, and push the `.gem` file to [rubygems.org](https://rubygems.org).
+To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, update the `CHANGELOG.md`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and the created tag, and push the `.gem` file to [rubygems.org](https://rubygems.org).
 
 ## Contributing
 

data/bananomia.gemspec

@@ -12,7 +12,7 @@ Gem::Specification.new do |s|
   s.description   = "Bananomia is a low-level wrapper around the Bionomia API."
   s.homepage      = "https://github.com/SpeciesFileGroup/bananomia"
   s.license       = "NCSA"
-  s.required_ruby_version = ">= 2.4.0"
+  s.required_ruby_version = ">= 2.5.0"
 
  # s.metadata["allowed_push_host"] = "TODO: Set to 'https://mygemserver.com'"
 
@@ -33,22 +33,17 @@ Gem::Specification.new do |s|
   # s.add_dependency "example-gem", "~> 1.0"
 
   s.add_development_dependency "bundler", "~> 2.1", ">= 2.1.4"
-  # s.add_development_dependency "codecov", "~> 0.5.0"
-  # s.add_development_dependency "json", "~> 2.3", ">= 2.3.1"
   s.add_development_dependency "rake", "~> 13.0", ">= 13.0.1"
-  # s.add_development_dependency "standard", "~> 1.0"
-  # s.add_development_dependency "simplecov", "~> 0.21.2"
   s.add_development_dependency "test-unit", "~> 3.3", ">= 3.3.6"
   s.add_development_dependency "vcr", "~> 6.0"
   s.add_development_dependency "webmock", "~> 3.18"
+  s.add_development_dependency "rexml", "~> 3.3", ">= 3.3.6"
+  # s.add_development_dependency "byebug"
 
   s.add_runtime_dependency "faraday", "~> 2.2"
   s.add_runtime_dependency "faraday-follow_redirects", ">= 0.1", "< 0.4"
   s.add_runtime_dependency "multi_json", "~> 1.15"
 
-  # TODO: comment out
-  s.add_development_dependency "byebug"
-
   #  s.add_runtime_dependency "thor", "~> 1.0", ">= 1.0.1"
 
   # For more information and examples about making a new gem, checkout our

data/lib/bananomia/error.rb

@@ -21,4 +21,4 @@ module Bananomia
   
     # Raised when Bionomia returns the HTTP status code 504
     class GatewayTimeout < Error; end
-  end
+end

data/lib/bananomia/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 module Bananomia
-  VERSION = "0.1.0"
+  VERSION = "0.1.1"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: bananomia
 version: !ruby/object:Gem::Version
-  version: 0.1.0
+  version: 0.1.1
 platform: ruby
 authors:
 - Geoff Ower, Matt Yoder
 autorequire:
 bindir: exe
 cert_chain: []
-date: 2023-08-30 00:00:00.000000000 Z
+date: 2024-09-11 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
@@ -98,6 +98,26 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: '3.18'
+- !ruby/object:Gem::Dependency
+  name: rexml
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.3'
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 3.3.6
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.3'
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: 3.3.6
 - !ruby/object:Gem::Dependency
   name: faraday
   requirement: !ruby/object:Gem::Requirement
@@ -146,20 +166,6 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: '1.15'
-- !ruby/object:Gem::Dependency
-  name: byebug
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
 description: Bananomia is a low-level wrapper around the Bionomia API.
 email:
 - gdower@illinois.edu
@@ -172,7 +178,6 @@ files:
 - CHANGELOG.md
 - CODE_OF_CONDUCT.md
 - Gemfile
-- Gemfile.lock
 - LICENSE.txt
 - README.md
 - Rakefile
@@ -192,7 +197,7 @@ licenses:
 metadata:
   homepage_uri: https://github.com/SpeciesFileGroup/bananomia
   source_code_uri: https://github.com/SpeciesFileGroup/bananomia
-  changelog_uri: https://github.com/SpeciesFileGroup/bananomia/releases/tag/v0.1.0
+  changelog_uri: https://github.com/SpeciesFileGroup/bananomia/releases/tag/v0.1.1
 post_install_message:
 rdoc_options: []
 require_paths:
@@ -201,14 +206,14 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
-      version: 2.4.0
+      version: 2.5.0
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.4.10
+rubygems_version: 3.5.11
 signing_key:
 specification_version: 4
 summary: Bionomia Client

data/Gemfile.lock

@@ -1,53 +0,0 @@
-PATH
-  remote: .
-  specs:
-    bananomia (0.1.0)
-      faraday (~> 2.2)
-      faraday-follow_redirects (>= 0.1, < 0.4)
-      multi_json (~> 1.15)
-
-GEM
-  remote: https://rubygems.org/
-  specs:
-    addressable (2.8.1)
-      public_suffix (>= 2.0.2, < 6.0)
-    byebug (11.1.3)
-    crack (0.4.5)
-      rexml
-    faraday (2.7.10)
-      faraday-net_http (>= 2.0, < 3.1)
-      ruby2_keywords (>= 0.0.4)
-    faraday-follow_redirects (0.3.0)
-      faraday (>= 1, < 3)
-    faraday-net_http (3.0.2)
-    hashdiff (1.0.1)
-    minitest (5.15.0)
-    multi_json (1.15.0)
-    power_assert (2.0.1)
-    public_suffix (5.0.1)
-    rake (13.0.6)
-    rexml (3.2.5)
-    ruby2_keywords (0.0.5)
-    test-unit (3.5.3)
-      power_assert
-    vcr (6.0.0)
-    webmock (3.18.1)
-      addressable (>= 2.8.0)
-      crack (>= 0.3.2)
-      hashdiff (>= 0.4.0, < 2.0.0)
-
-PLATFORMS
-  x86_64-linux
-
-DEPENDENCIES
-  bananomia!
-  bundler (~> 2.1, >= 2.1.4)
-  byebug
-  minitest (~> 5.0)
-  rake (~> 13.0)
-  test-unit (~> 3.3, >= 3.3.6)
-  vcr (~> 6.0)
-  webmock (~> 3.18)
-
-BUNDLED WITH
-   2.3.24