bacterial-annotator 0.8.3 → 0.8.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/bacterial-comparator.rb +2 -6
- metadata +2 -2
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 40d2f200654b6d1df08886ea7ba5f01d05e8d2b589043138fcb164067679dab4
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data.tar.gz: 33f9bdce9a193dadcc78a42d6e60a4b2b6d517d41c9a4020f5fe69a10c99c826
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 883e0141905a3bcc49fe440cb22b4222343ddb6b2606cf4b8e6740796de16e631b46e4ebba0b6f313011c89a250fbc79a215f622b132475d923128da82d83a01
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data.tar.gz: 450052e5032a1e2a5aaf21d417e809f7e8e585aad61c681d8754d8d45354c1987cd3b43b3d632f74d9daa5c7877f32ee2993d231935327df4b35965673f04aa0
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data/lib/bacterial-comparator.rb
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@@ -303,8 +303,7 @@ class BacterialComparator
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puts "# Sequence alignments - individual proteins a.a. (MAFFT) [DONE] (in #{c_time})"
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# FIXME ugly hack to find out the reference genome
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Dir.chdir(
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Dir.chdir("../")
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Dir.chdir(ori_dir)
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ref_id = Dir["#{@genomes_list[0]}/*.pep"][0].split('/')[-1].gsub(".pep","")
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concat_alignments "#{@outdir}/align-genes-pep.all.fasta", ref_id
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@@ -339,11 +338,8 @@ class BacterialComparator
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end
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# ugly hack to find out the reference genome FIXME
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Dir.chdir(
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Dir.chdir("../")
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Dir.chdir(ori_dir)
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ref_id = Dir["#{@genomes_list[0]}/*.pep"][0].split('/')[-1].gsub(".pep","")
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# ref_id = Dir["#{ori_dir}/#{@genomes_list[0]}/*.pep"][0].split('/')[-1].gsub(".pep","")
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end_time = Time.now
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c_time = Helper.sec2str(end_time-start_time)
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metadata
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: bacterial-annotator
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version: !ruby/object:Gem::Version
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version: 0.8.
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version: 0.8.4
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platform: ruby
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authors:
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- Maxime Deraspe
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2018-05-
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date: 2018-05-24 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bio
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