bacterial-annotator 0.8.3 → 0.8.4
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- checksums.yaml +4 -4
- data/lib/bacterial-comparator.rb +2 -6
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 40d2f200654b6d1df08886ea7ba5f01d05e8d2b589043138fcb164067679dab4
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4
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+
data.tar.gz: 33f9bdce9a193dadcc78a42d6e60a4b2b6d517d41c9a4020f5fe69a10c99c826
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 883e0141905a3bcc49fe440cb22b4222343ddb6b2606cf4b8e6740796de16e631b46e4ebba0b6f313011c89a250fbc79a215f622b132475d923128da82d83a01
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7
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+
data.tar.gz: 450052e5032a1e2a5aaf21d417e809f7e8e585aad61c681d8754d8d45354c1987cd3b43b3d632f74d9daa5c7877f32ee2993d231935327df4b35965673f04aa0
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data/lib/bacterial-comparator.rb
CHANGED
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@@ -303,8 +303,7 @@ class BacterialComparator
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303
303
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puts "# Sequence alignments - individual proteins a.a. (MAFFT) [DONE] (in #{c_time})"
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304
304
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305
305
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# FIXME ugly hack to find out the reference genome
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306
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-
Dir.chdir(
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307
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-
Dir.chdir("../")
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306
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+
Dir.chdir(ori_dir)
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308
307
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ref_id = Dir["#{@genomes_list[0]}/*.pep"][0].split('/')[-1].gsub(".pep","")
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309
308
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310
309
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concat_alignments "#{@outdir}/align-genes-pep.all.fasta", ref_id
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@@ -339,11 +338,8 @@ class BacterialComparator
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339
338
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end
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340
339
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341
340
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# ugly hack to find out the reference genome FIXME
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342
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-
Dir.chdir(
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343
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-
Dir.chdir("../")
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344
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-
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341
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+
Dir.chdir(ori_dir)
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345
342
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ref_id = Dir["#{@genomes_list[0]}/*.pep"][0].split('/')[-1].gsub(".pep","")
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346
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-
# ref_id = Dir["#{ori_dir}/#{@genomes_list[0]}/*.pep"][0].split('/')[-1].gsub(".pep","")
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347
343
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348
344
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end_time = Time.now
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349
345
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c_time = Helper.sec2str(end_time-start_time)
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: bacterial-annotator
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.8.
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4
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+
version: 0.8.4
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Maxime Deraspe
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8
8
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autorequire:
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9
9
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bindir: bin
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10
10
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cert_chain: []
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11
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-
date: 2018-05-
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11
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+
date: 2018-05-24 00:00:00.000000000 Z
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12
12
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dependencies:
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13
13
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- !ruby/object:Gem::Dependency
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14
14
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name: bio
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