bacterial-annotator 0.1.3 → 0.1.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/bin/ba_prodigal +20 -3
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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2
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SHA1:
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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metadata.gz: 35daa78965e345c7989b43cdd020075f923ea6e3
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4
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data.tar.gz: e4e6b3a695f113d93f7d2a9922b065cebf43daba
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SHA512:
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6
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-
metadata.gz:
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7
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data.tar.gz:
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6
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metadata.gz: a761119f830c438235ab2bd36e3547277d70fe1652e3f3c4c13137213dddb7e9e8ca7a607bf6185bdccd7f5f8c2fcced53074ebf7e63e69d5e37403a5180a701
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7
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data.tar.gz: b77ecffa01a1d32f36c4c3fd7f0c4c81be356fcb30fa62410b80e572f43ae78005d4822e487214a1d6b3b7be6e4ff2bd2786e79fc86b7917787b999133a6192d
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data/bin/ba_prodigal
CHANGED
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@@ -15,16 +15,33 @@ ROOT_path = File.dirname(__FILE__)
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# Install prodigal on the user system
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def installProdigal
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# begin
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19
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# resp = open("https://github.com/hyattpd/Prodigal/releases/download/v2.6.2/prodigal.linux")
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# open("#{ROOT_path}/prodigal.linux", "wb") do |file|
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# file.write(resp.read)
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# end
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# File.chmod(0755, "#{ROOT_path}/prodigal.linux")
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# rescue
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# abort "Problem installing Prodigal, aborting"
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# end
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begin
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resp = open("https://github.com/hyattpd/Prodigal/
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open("#{ROOT_path}/
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resp = open("https://github.com/hyattpd/Prodigal/archive/v2.6.2.tar.gz")
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open("#{ROOT_path}/v2.6.2.tar.gz", "wb") do |file|
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file.write(resp.read)
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end
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Dir.chdir("#{ROOT_path}/")
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`tar xvf v2.6.2.tar.gz; rm v2.6.2.tar.gz`
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Dir.chdir("#{ROOT_path}/Prodigal-2.6.2")
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`make`
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`cp #{ROOT_path}/Prodigal-2.6.2/prodigal #{ROOT_path}/prodigal.linux`
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File.chmod(0755, "#{ROOT_path}/prodigal.linux")
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# Dir.chir("#{ROOT_path}")
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# File.chmod(0755, "#{ROOT_path}/prodigal.linux")
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rescue
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abort "Problem installing Prodigal, aborting"
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end
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-
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: bacterial-annotator
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version: !ruby/object:Gem::Version
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-
version: 0.1.
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version: 0.1.4
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platform: ruby
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authors:
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- Maxime Deraspe
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2015-
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date: 2015-06-03 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bio
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