bacterial-annotator 0.1.3 → 0.1.4
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- checksums.yaml +4 -4
- data/bin/ba_prodigal +20 -3
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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|
3
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-
metadata.gz:
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|
4
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-
data.tar.gz:
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|
3
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+
metadata.gz: 35daa78965e345c7989b43cdd020075f923ea6e3
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|
4
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+
data.tar.gz: e4e6b3a695f113d93f7d2a9922b065cebf43daba
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5
5
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SHA512:
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|
6
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-
metadata.gz:
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|
7
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-
data.tar.gz:
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6
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+
metadata.gz: a761119f830c438235ab2bd36e3547277d70fe1652e3f3c4c13137213dddb7e9e8ca7a607bf6185bdccd7f5f8c2fcced53074ebf7e63e69d5e37403a5180a701
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|
7
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+
data.tar.gz: b77ecffa01a1d32f36c4c3fd7f0c4c81be356fcb30fa62410b80e572f43ae78005d4822e487214a1d6b3b7be6e4ff2bd2786e79fc86b7917787b999133a6192d
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data/bin/ba_prodigal
CHANGED
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@@ -15,16 +15,33 @@ ROOT_path = File.dirname(__FILE__)
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15
15
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# Install prodigal on the user system
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16
16
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def installProdigal
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|
17
17
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18
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+
# begin
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|
19
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+
# resp = open("https://github.com/hyattpd/Prodigal/releases/download/v2.6.2/prodigal.linux")
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|
20
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+
# open("#{ROOT_path}/prodigal.linux", "wb") do |file|
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21
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+
# file.write(resp.read)
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|
22
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+
# end
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|
23
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+
# File.chmod(0755, "#{ROOT_path}/prodigal.linux")
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|
24
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+
# rescue
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25
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+
# abort "Problem installing Prodigal, aborting"
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|
26
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+
# end
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|
27
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+
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|
18
28
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begin
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|
19
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-
resp = open("https://github.com/hyattpd/Prodigal/
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|
20
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-
open("#{ROOT_path}/
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|
29
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+
resp = open("https://github.com/hyattpd/Prodigal/archive/v2.6.2.tar.gz")
|
|
30
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+
open("#{ROOT_path}/v2.6.2.tar.gz", "wb") do |file|
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21
31
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file.write(resp.read)
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22
32
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end
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|
33
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+
Dir.chdir("#{ROOT_path}/")
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|
34
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+
`tar xvf v2.6.2.tar.gz; rm v2.6.2.tar.gz`
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|
35
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+
Dir.chdir("#{ROOT_path}/Prodigal-2.6.2")
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|
36
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+
`make`
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|
37
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+
`cp #{ROOT_path}/Prodigal-2.6.2/prodigal #{ROOT_path}/prodigal.linux`
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|
23
38
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File.chmod(0755, "#{ROOT_path}/prodigal.linux")
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|
39
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+
# Dir.chir("#{ROOT_path}")
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|
40
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+
# File.chmod(0755, "#{ROOT_path}/prodigal.linux")
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|
24
41
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rescue
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|
25
42
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abort "Problem installing Prodigal, aborting"
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|
26
43
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end
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|
27
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-
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|
44
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+
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|
28
45
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end
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|
29
46
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|
30
47
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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|
|
1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: bacterial-annotator
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|
3
3
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version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.1.
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|
4
|
+
version: 0.1.4
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|
5
5
|
platform: ruby
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|
6
6
|
authors:
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|
7
7
|
- Maxime Deraspe
|
|
8
8
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autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2015-
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|
11
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+
date: 2015-06-03 00:00:00.000000000 Z
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|
12
12
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dependencies:
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|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
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name: bio
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