bacterial-annotator 0.8.6 → 0.8.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +5 -5
- data/bin/ba_fasta36 +8 -8
- data/bin/ba_mafft +2 -2
- data/bin/bacterial-annotator +1 -1
- metadata +3 -3
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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-
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metadata.gz:
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data.tar.gz:
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2
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SHA256:
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metadata.gz: ccd4ec38f8880905fd43dd868a29b790ef534690ba521eef4504e6e7f0e7741b
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4
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data.tar.gz: a07de1a17b875da6b060e035a0e98f2576e8f60f4f938d7a21d560db00ca59a2
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 94feca6e39fa592c77a835834d9488e6f149911bb0752c8375b86908f99a024e883687c2ee7b5739360eadcf2f3ad393019c2b39df74f5a7fd9f1d9b5a0c75d0
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7
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data.tar.gz: 46c338b40f66563f4af1d97a86a92be9975c0f444a9584f26ab946ae1ce214829d23d939d971c24ea72ac0c386896183adff449e4d72370666587701198c3e87
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data/bin/ba_fasta36
CHANGED
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@@ -10,23 +10,23 @@
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require 'open-uri'
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ROOT_path = File.dirname(__FILE__)
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# fasta36 URL = "https://github.com/wrpearson/fasta36/releases/download/v36.3.
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# fasta36 URL = "https://github.com/wrpearson/fasta36/releases/download/v36.3.8g_13Apr16/fasta-36.3.8g-linux64.tar.gz"
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# Install fasta36 on the user system
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def installFasta36
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begin
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resp = open("https://github.com/wrpearson/fasta36/releases/download/v36.3.
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open("#{ROOT_path}/fasta-36.3.
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resp = open("https://github.com/wrpearson/fasta36/releases/download/v36.3.8g_13Apr16/fasta-36.3.8g-linux64.tar.gz")
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open("#{ROOT_path}/fasta-36.3.8g-linux64.tar.gz", "wb") do |file|
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file.write(resp.read)
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end
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Dir.chdir("#{ROOT_path}/")
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`tar xvf fasta-36.3.
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`cp fasta-36.3.
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`cp fasta-36.3.
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`cp fasta-36.3.
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`tar xvf fasta-36.3.8g-linux64.tar.gz; rm fasta-36.3.8g-linux64.tar.gz`
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`cp fasta-36.3.8g/bin/fasta36 ./fasta36.linux`
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`cp fasta-36.3.8g/bin/glsearch36 ./glsearch36.linux`
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`cp fasta-36.3.8g/bin/tfastx36 ./tfastx36.linux`
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File.chmod(0755, "#{ROOT_path}/fasta36.linux")
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`rm -fr fasta-36.3.
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`rm -fr fasta-36.3.8g`
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rescue
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abort "Problem installing Fasta36, aborting"
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end
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data/bin/ba_mafft
CHANGED
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@@ -10,12 +10,12 @@
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require 'open-uri'
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ROOT_path = File.dirname(__FILE__)
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# mafft_url =
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# mafft_url = https://mafft.cbrc.jp/alignment/software/mafft-7.222-without-extensions-src.tgz
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# Install MAFFT on the user system
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def installMafft
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begin
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resp = open("
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resp = open("https://mafft.cbrc.jp/alignment/software/mafft-7.222-without-extensions-src.tgz")
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open("#{ROOT_path}/mafft-7.222-without-extensions-src.tgz", "wb") do |file|
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file.write(resp.read)
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end
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data/bin/bacterial-annotator
CHANGED
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@@ -20,7 +20,7 @@ def print_version
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version += " -- Prodigal v2.6.2\n"
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version += " -- BLAT standalone version\n"
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version += " -- MAFFT v7.222\n"
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version += " -- fasta36 v36.3.
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version += " -- fasta36 v36.3.8g\n"
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version += " -- RAxML v8.2.11\n"
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version += " -- FastTree v2.1.10\n"
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version += " -- MASH v2.0\n"
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: bacterial-annotator
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version: !ruby/object:Gem::Version
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version: 0.8.
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version: 0.8.7
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platform: ruby
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authors:
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- Maxime Deraspe
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2018-
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date: 2018-08-01 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bio
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@@ -126,7 +126,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 2.
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rubygems_version: 2.7.7
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signing_key:
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specification_version: 4
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summary: Bacterial Annotator
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