bacterial-annotator 0.8.6 → 0.8.7

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Files changed (5) hide show
  1. checksums.yaml +5 -5
  2. data/bin/ba_fasta36 +8 -8
  3. data/bin/ba_mafft +2 -2
  4. data/bin/bacterial-annotator +1 -1
  5. metadata +3 -3
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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- SHA1:
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- metadata.gz: dc2f69e483c0756ebfabea8c0badf0058b2e1e2a
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- data.tar.gz: 0c4b2aeb231be810881677a791608515e8cfbad2
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+ SHA256:
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+ metadata.gz: ccd4ec38f8880905fd43dd868a29b790ef534690ba521eef4504e6e7f0e7741b
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+ data.tar.gz: a07de1a17b875da6b060e035a0e98f2576e8f60f4f938d7a21d560db00ca59a2
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  SHA512:
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- metadata.gz: d14c312a87bd7a3b49e360bd22804b1d42145ef7c948542fb7ae49d40a4a042d906d9ccd86975af703406ebf327b6c1d19e3324c4231475a2a80411ec4e61dac
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- data.tar.gz: d28eaae667a9d2c3ce77c77e0b2b05ec65ff87081a10082fbf328cb32545cd90e582634682b8bed9143812412971b01b568443b897b6b23df3be91eabc7a9a82
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+ metadata.gz: 94feca6e39fa592c77a835834d9488e6f149911bb0752c8375b86908f99a024e883687c2ee7b5739360eadcf2f3ad393019c2b39df74f5a7fd9f1d9b5a0c75d0
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+ data.tar.gz: 46c338b40f66563f4af1d97a86a92be9975c0f444a9584f26ab946ae1ce214829d23d939d971c24ea72ac0c386896183adff449e4d72370666587701198c3e87
data/bin/ba_fasta36 CHANGED
@@ -10,23 +10,23 @@
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  require 'open-uri'
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  ROOT_path = File.dirname(__FILE__)
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- # fasta36 URL = "https://github.com/wrpearson/fasta36/releases/download/v36.3.8d_13Apr16/fasta-36.3.8d-linux64.tar.gz"
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+ # fasta36 URL = "https://github.com/wrpearson/fasta36/releases/download/v36.3.8g_13Apr16/fasta-36.3.8g-linux64.tar.gz"
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  # Install fasta36 on the user system
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  def installFasta36
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  begin
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- resp = open("https://github.com/wrpearson/fasta36/releases/download/v36.3.8d_13Apr16/fasta-36.3.8d-linux64.tar.gz")
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- open("#{ROOT_path}/fasta-36.3.8d-linux64.tar.gz", "wb") do |file|
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+ resp = open("https://github.com/wrpearson/fasta36/releases/download/v36.3.8g_13Apr16/fasta-36.3.8g-linux64.tar.gz")
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+ open("#{ROOT_path}/fasta-36.3.8g-linux64.tar.gz", "wb") do |file|
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  file.write(resp.read)
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  end
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  Dir.chdir("#{ROOT_path}/")
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- `tar xvf fasta-36.3.8d-linux64.tar.gz; rm fasta-36.3.8d-linux64.tar.gz`
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- `cp fasta-36.3.8d/bin/fasta36 ./fasta36.linux`
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- `cp fasta-36.3.8d/bin/glsearch36 ./glsearch36.linux`
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- `cp fasta-36.3.8d/bin/tfastx36 ./tfastx36.linux`
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+ `tar xvf fasta-36.3.8g-linux64.tar.gz; rm fasta-36.3.8g-linux64.tar.gz`
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+ `cp fasta-36.3.8g/bin/fasta36 ./fasta36.linux`
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+ `cp fasta-36.3.8g/bin/glsearch36 ./glsearch36.linux`
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+ `cp fasta-36.3.8g/bin/tfastx36 ./tfastx36.linux`
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  File.chmod(0755, "#{ROOT_path}/fasta36.linux")
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- `rm -fr fasta-36.3.8d`
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+ `rm -fr fasta-36.3.8g`
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  rescue
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  abort "Problem installing Fasta36, aborting"
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  end
data/bin/ba_mafft CHANGED
@@ -10,12 +10,12 @@
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  require 'open-uri'
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  ROOT_path = File.dirname(__FILE__)
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- # mafft_url = http://mafft.cbrc.jp/alignment/software/mafft-7.222-without-extensions-src.tgz
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+ # mafft_url = https://mafft.cbrc.jp/alignment/software/mafft-7.222-without-extensions-src.tgz
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  # Install MAFFT on the user system
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  def installMafft
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  begin
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- resp = open("http://mafft.cbrc.jp/alignment/software/mafft-7.222-without-extensions-src.tgz")
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+ resp = open("https://mafft.cbrc.jp/alignment/software/mafft-7.222-without-extensions-src.tgz")
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  open("#{ROOT_path}/mafft-7.222-without-extensions-src.tgz", "wb") do |file|
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  file.write(resp.read)
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  end
data/bin/bacterial-annotator CHANGED
@@ -20,7 +20,7 @@ def print_version
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  version += " -- Prodigal v2.6.2\n"
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  version += " -- BLAT standalone version\n"
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  version += " -- MAFFT v7.222\n"
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- version += " -- fasta36 v36.3.8d\n"
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+ version += " -- fasta36 v36.3.8g\n"
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  version += " -- RAxML v8.2.11\n"
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  version += " -- FastTree v2.1.10\n"
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  version += " -- MASH v2.0\n"
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: bacterial-annotator
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  version: !ruby/object:Gem::Version
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- version: 0.8.6
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+ version: 0.8.7
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  platform: ruby
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  authors:
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  - Maxime Deraspe
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2018-07-31 00:00:00.000000000 Z
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+ date: 2018-08-01 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: bio
@@ -126,7 +126,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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  version: '0'
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  requirements: []
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  rubyforge_project:
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- rubygems_version: 2.6.14
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+ rubygems_version: 2.7.7
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  signing_key:
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  specification_version: 4
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  summary: Bacterial Annotator