bacterial-annotator 0.8.4 → 0.8.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/bin/bacterial-annotator +20 -8
- metadata +3 -3
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: da5221d8f00eb6042cc1b7ea5f99101dc9acb7120c7e2c8f85833e3a1d52045f
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data.tar.gz: 2836e79ce4062db2cd8ae795cbdcfeba81a8dfcaa6c44bf4610d1a4da20e4786
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 93f660143c5c67ed505c9cdd9ba6d41e70bc788e6578c0fb440de4519b60ca9b79297f2c149f6489a10b205ea3767e1f3649cc369dd7f1c4122843562200f179
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7
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data.tar.gz: 88e3aa0ed0a1f15cb27fe9ad61a216ba2bbd2cd0654c61f4105273eb041cfbfb07ae89e5f9e079178cdc81946b8c7bb73f38eefecc7bbd523858338bfafa4996
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data/bin/bacterial-annotator
CHANGED
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@@ -38,6 +38,8 @@ bacterial-annotator [annotate | compare] [OPTIONS]
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# Choose either to annotate a genome or compare several genome annotations
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install Install the third parties dependencies
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identify [OPTIONS]
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.. see identify -h for OPTIONS
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@@ -281,15 +283,9 @@ def parseOptions_identify
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end
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def install_dep
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########
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# MAIN #
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########
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if ARGV.size >= 1
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ROOT = File.dirname(__FILE__)
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# requirement ruby, ruby-dev, unzip
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# Check for 3rd party dependencies : Prodigal, Blat, MAFFT, ...
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system("ba_prodigal")
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@@ -303,6 +299,18 @@ if ARGV.size >= 1
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system("ba_mash")
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system("ba_trnascan")
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end
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########
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# MAIN #
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########
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if ARGV.size >= 1
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ROOT = File.dirname(__FILE__)
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options = {}
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if ARGV[0] == "annotate"
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@@ -310,6 +318,8 @@ if ARGV.size >= 1
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ARGV.shift
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options = parseOptions_annotate
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install_dep
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if ! File.exist? ("#{ROOT}/blat.linux")
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puts "Exiting program because blat is missing"
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abort
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@@ -351,6 +361,8 @@ if ARGV.size >= 1
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print_version
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abort
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elsif ARGV[0] == "install"
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install_dep
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else
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usage
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: bacterial-annotator
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version: !ruby/object:Gem::Version
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version: 0.8.
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version: 0.8.5
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platform: ruby
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authors:
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- Maxime Deraspe
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2018-
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date: 2018-07-19 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bio
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@@ -126,7 +126,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 2.7.
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rubygems_version: 2.7.7
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signing_key:
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specification_version: 4
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summary: Bacterial Annotator
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