bacterial-annotator 0.6.0 → 0.6.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/bin/ba_cdhit +1 -0
- data/bin/ba_fasta36 +1 -0
- data/bin/ba_mafft +2 -1
- data/bin/ba_prodigal +1 -2
- data/bin/ba_raxml +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA1:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 110718bf7fe99545dd5418522eb463b51e6b483f
|
|
4
|
+
data.tar.gz: 631d8765e3ecdcdd04497bbbccb589d6ab6688c5
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: cd532e9139c817b75d835bab7cd3124574d311b6484289f8c642c5f823411cdca5427c6088f93f0ed01c291a782ad0100b40f8bfe15d3a75234b6deb7a21ffa6
|
|
7
|
+
data.tar.gz: 0187bc5c3faa8e52184b00a12496e06ca6cc36b51d995a273a76f4728707e589cd011532f7060ac10146a78f8b466e28dcfd0ebf8552819d3c78a349083c32a6
|
data/bin/ba_cdhit
CHANGED
|
@@ -29,6 +29,7 @@ def installcdhit
|
|
|
29
29
|
`mv ./cd-hit-v4.6.8-2017-0621/cd-hit-2d ./cdhit2d.linux`
|
|
30
30
|
File.chmod(0755, "#{ROOT_path}/cdhit.linux")
|
|
31
31
|
File.chmod(0755, "#{ROOT_path}/cdhit2d.linux")
|
|
32
|
+
`rm -fr cd-hit-v4.6.8-2017-0621`
|
|
32
33
|
rescue
|
|
33
34
|
abort "Problem installing cdhit, aborting"
|
|
34
35
|
end
|
data/bin/ba_fasta36
CHANGED
|
@@ -26,6 +26,7 @@ def installFasta36
|
|
|
26
26
|
`cp fasta-36.3.8d/bin/glsearch36 ./glsearch36.linux`
|
|
27
27
|
`cp fasta-36.3.8d/bin/tfastx36 ./tfastx36.linux`
|
|
28
28
|
File.chmod(0755, "#{ROOT_path}/fasta36.linux")
|
|
29
|
+
`rm -fr fasta-36.3.8d`
|
|
29
30
|
rescue
|
|
30
31
|
abort "Problem installing Fasta36, aborting"
|
|
31
32
|
end
|
data/bin/ba_mafft
CHANGED
|
@@ -20,7 +20,7 @@ def installMafft
|
|
|
20
20
|
file.write(resp.read)
|
|
21
21
|
end
|
|
22
22
|
Dir.chdir("#{ROOT_path}/")
|
|
23
|
-
`tar xvf mafft-7.222-without-extensions-src.tgz`
|
|
23
|
+
`tar xvf mafft-7.222-without-extensions-src.tgz && rm mafft-7.222-without-extensions-src.tgz`
|
|
24
24
|
Dir.chdir("#{ROOT_path}/mafft-7.222-without-extensions/core")
|
|
25
25
|
`make`
|
|
26
26
|
`make install PREFIX=$(pwd -P)/../`
|
|
@@ -28,6 +28,7 @@ def installMafft
|
|
|
28
28
|
`echo export MAFFT_BINARIES=$(pwd -P)/../binaries >> #{ROOT_path}/mafft.linux`
|
|
29
29
|
`tail -n +2 #{ROOT_path}/mafft-7.222-without-extensions/bin/mafft >> #{ROOT_path}/mafft.linux`
|
|
30
30
|
File.chmod(0755, "#{ROOT_path}/mafft.linux")
|
|
31
|
+
`rm -fr mafft-7.222-without-extensions`
|
|
31
32
|
rescue
|
|
32
33
|
abort "Problem in stalling MAFFT, aborting"
|
|
33
34
|
end
|
data/bin/ba_prodigal
CHANGED
|
@@ -27,8 +27,7 @@ def installProdigal
|
|
|
27
27
|
Dir.chdir("../")
|
|
28
28
|
`cp Prodigal-2.6.2/prodigal prodigal.linux`
|
|
29
29
|
File.chmod(0755, "#{ROOT_path}/prodigal.linux")
|
|
30
|
-
|
|
31
|
-
# File.chmod(0755, "#{ROOT_path}/prodigal.linux")
|
|
30
|
+
`rm -fr Prodigal-2.6.2`
|
|
32
31
|
rescue
|
|
33
32
|
abort "Problem installing Prodigal, aborting"
|
|
34
33
|
end
|
data/bin/ba_raxml
CHANGED