bacterial-annotator 0.6.0 → 0.6.1

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 1ef156f21da883b7175715d94f734fe2cadb3d02
-  data.tar.gz: 2620a56039162760e875242c1225bac333d78be1
+  metadata.gz: 110718bf7fe99545dd5418522eb463b51e6b483f
+  data.tar.gz: 631d8765e3ecdcdd04497bbbccb589d6ab6688c5
 SHA512:
-  metadata.gz: 44d3900f5b482a0bf66b87662384553603b7862d8c85b10c6eb71c498df18b9aba98fc792f590601faf6b50f03d638786b8e6515b05dc9444ef15c44412f1824
-  data.tar.gz: dc65c44722a63fc21b3a87a3bad9770942788eb16da89d3c79d4a1ec154a095fa0304465fe1c5e5f076b8c57d04d8cddb765492678e48e212d4f32a805ddb52f
+  metadata.gz: cd532e9139c817b75d835bab7cd3124574d311b6484289f8c642c5f823411cdca5427c6088f93f0ed01c291a782ad0100b40f8bfe15d3a75234b6deb7a21ffa6
+  data.tar.gz: 0187bc5c3faa8e52184b00a12496e06ca6cc36b51d995a273a76f4728707e589cd011532f7060ac10146a78f8b466e28dcfd0ebf8552819d3c78a349083c32a6

data/bin/ba_cdhit

@@ -29,6 +29,7 @@ def installcdhit
     `mv ./cd-hit-v4.6.8-2017-0621/cd-hit-2d ./cdhit2d.linux`
     File.chmod(0755, "#{ROOT_path}/cdhit.linux")
     File.chmod(0755, "#{ROOT_path}/cdhit2d.linux")
+    `rm -fr cd-hit-v4.6.8-2017-0621`
   rescue
     abort "Problem installing cdhit, aborting"
   end

data/bin/ba_fasta36

@@ -26,6 +26,7 @@ def installFasta36
     `cp fasta-36.3.8d/bin/glsearch36 ./glsearch36.linux`
     `cp fasta-36.3.8d/bin/tfastx36 ./tfastx36.linux`
     File.chmod(0755, "#{ROOT_path}/fasta36.linux")
+    `rm -fr fasta-36.3.8d`
   rescue
     abort "Problem installing Fasta36, aborting"
   end

data/bin/ba_mafft

@@ -20,7 +20,7 @@ def installMafft
       file.write(resp.read)
     end
     Dir.chdir("#{ROOT_path}/")
-    `tar xvf mafft-7.222-without-extensions-src.tgz`
+    `tar xvf mafft-7.222-without-extensions-src.tgz && rm mafft-7.222-without-extensions-src.tgz`
     Dir.chdir("#{ROOT_path}/mafft-7.222-without-extensions/core")
     `make`
     `make install PREFIX=$(pwd -P)/../`
@@ -28,6 +28,7 @@ def installMafft
     `echo export MAFFT_BINARIES=$(pwd -P)/../binaries >> #{ROOT_path}/mafft.linux`
     `tail -n +2 #{ROOT_path}/mafft-7.222-without-extensions/bin/mafft >> #{ROOT_path}/mafft.linux`
     File.chmod(0755, "#{ROOT_path}/mafft.linux")
+    `rm -fr mafft-7.222-without-extensions`
   rescue
     abort "Problem in stalling MAFFT, aborting"
   end

data/bin/ba_prodigal

@@ -27,8 +27,7 @@ def installProdigal
     Dir.chdir("../")
     `cp Prodigal-2.6.2/prodigal prodigal.linux`
     File.chmod(0755, "#{ROOT_path}/prodigal.linux")
-    # Dir.chir("#{ROOT_path}")
-    # File.chmod(0755, "#{ROOT_path}/prodigal.linux")
+    `rm -fr Prodigal-2.6.2`
   rescue
     abort "Problem installing Prodigal, aborting"
   end

data/bin/ba_raxml

@@ -20,7 +20,7 @@ def installRaxml
       file.write(resp.read)
     end
     Dir.chdir("#{ROOT_path}/")
-    `unzip master.zip`
+    `unzip master.zip && rm master.zip`
     Dir.chdir("#{ROOT_path}/standard-RAxML-master")
     `make -f Makefile.PTHREADS.gcc`
     `rm *.o`

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bacterial-annotator
 version: !ruby/object:Gem::Version
-  version: 0.6.0
+  version: 0.6.1
 platform: ruby
 authors:
 - Maxime Deraspe