bacterial-annotator 0.1.6 → 0.1.7
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- checksums.yaml +4 -4
- data/lib/bacterial-annotator/genbank-manip.rb +6 -2
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 2620736bb062558a4f44ee488f0c670945f42c85
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4
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+
data.tar.gz: 0ebfcfe4f935415818ade300927148a6cdcccff1
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: ea81aa3caad269501af23e31b5d6fa9157b1a291da6467b31b74faaf207038255c5f42cd50f8c2c560304c84754af00bbdaf710120c0a8c9c03b9f029134fb18
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7
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+
data.tar.gz: a89e07dc87b7c219f664be43fb17154ae7c40d19ffc23fdd84ae0ff89dc3d66867ba8cd8121c01b7c2a4b8fa14db7f2fbf65f03ac04e2c502bca180a31babd1d
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@@ -57,15 +57,19 @@ class GenbankManip
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57
57
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product = ftH["product"] if !ftH["product"].nil?
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58
58
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protId = ftH["protein_id"][0] if !ftH["protein_id"].nil?
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59
59
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locustag = ftH["locus_tag"][0] if !ftH["locus_tag"].nil?
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60
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-
dna = get_DNA(ft,@bioseq)
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61
60
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if ftH.has_key? "translation"
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62
61
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pep = ftH["translation"][0] if !ftH["translation"].nil?
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63
62
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else
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64
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-
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63
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+
dna = get_DNA(ft,@bioseq)
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64
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+
pep = dna.translate
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65
65
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end
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66
66
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67
67
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pepBioSeq = Bio::Sequence.auto(pep)
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68
68
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69
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+
if protId.strip == ""
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70
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+
protId = locustag
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71
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+
end
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72
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+
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69
73
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@coding_seq[protId] = {location: loc,
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70
74
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locustag: locustag,
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71
75
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gene: gene[0],
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: bacterial-annotator
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.1.
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4
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+
version: 0.1.7
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Maxime Deraspe
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8
8
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autorequire:
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9
9
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bindir: bin
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10
10
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cert_chain: []
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11
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-
date: 2015-
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11
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+
date: 2015-10-27 00:00:00.000000000 Z
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12
12
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dependencies:
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13
13
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- !ruby/object:Gem::Dependency
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14
14
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name: bio
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