bacterial-annotator 0.1.5 → 0.1.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 394e3bf854b173d4998e9d26aad260ba63ecc4fd
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data.tar.gz: 34de847a44130804fd4886e64cc6b51d3e568991
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: baea5e38ce01916a1e9f0444b238ee62c9f6915139e2d8109ec1590948a52081accdfbca1897cc5af826bfc7a59a51b9eeb3c9f5e6c5d5689766a6d6be517283
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data.tar.gz: 2c834356aec685bdc2bd910cf7150ee5212e075d0f4ef253da18577a96243aed51015b9a56ef20c9f3992d9bc3d5ff435af473045c9a728d2e97a25845d3dd39
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@@ -86,13 +86,13 @@ class FastaManip
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day = "%02d" % date.day
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year = date.year
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locus = "LOCUS #{file_name}#{spacer}#{seq_length.to_s} bp DNA linear BCT #{day}-#{month}-#{year}\n"
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locus += "DEFINITION #{file_name}\n"
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fopen = File.open("#{outdir}/single-genbank/#{file_name}.gbk", "w")
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fopen.write(locus)
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fopen.write(l)
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elsif l[0..1] == "//"
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fopen.write(outseq)
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fopen.close
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-
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elsif ! l.include? " /note="
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fopen.write(l)
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end
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end
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@@ -106,11 +106,8 @@ class GenbankManip
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nb_of_added_ft = 0
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i = 0
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-
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delete("\"").
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delete("=").
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split(" ")[0]
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contig = @gbk.definition
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# iterate through
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@gbk.features.each_with_index do |cds, ft_index|
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@@ -119,6 +116,7 @@ class GenbankManip
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if mode == 0
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ftArray = []
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cds.qualifiers = []
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else
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ftArray = cds.qualifiers
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end
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: bacterial-annotator
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version: !ruby/object:Gem::Version
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version: 0.1.
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version: 0.1.6
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platform: ruby
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authors:
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- Maxime Deraspe
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2015-06-
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date: 2015-06-04 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bio
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