bacterial-annotator 0.1.4 → 0.1.5
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- checksums.yaml +4 -4
- data/bin/ba_prodigal +1 -15
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 5515eba9f5210f5ab1ec8d32ec6c88f3ef1579b9
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4
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+
data.tar.gz: eb6abf3a4b876c8078c5dfb3c1e19ed9a17dc76e
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 4c55bca9cea54aaf3104a0b1bf7d34e3390b3971b234391f39ad95b043d1320ee2abbb0092a3a387d87b7ed258cd2be4bbc65ed37bf24811f434ca878f99ea60
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7
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+
data.tar.gz: b33840baec3794e1a9509026c1da43f3ac27438cd7c53be1cd4373548c22f9c760efab4f48a54e77c9e6341143d2c47834a26223afcb7fe38fe1cfcccd02d9af
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data/bin/ba_prodigal
CHANGED
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@@ -15,16 +15,6 @@ ROOT_path = File.dirname(__FILE__)
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15
15
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# Install prodigal on the user system
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16
16
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def installProdigal
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17
17
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18
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# begin
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19
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-
# resp = open("https://github.com/hyattpd/Prodigal/releases/download/v2.6.2/prodigal.linux")
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20
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-
# open("#{ROOT_path}/prodigal.linux", "wb") do |file|
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21
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# file.write(resp.read)
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22
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-
# end
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23
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-
# File.chmod(0755, "#{ROOT_path}/prodigal.linux")
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24
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-
# rescue
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25
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# abort "Problem installing Prodigal, aborting"
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26
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-
# end
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27
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-
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28
18
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begin
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29
19
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resp = open("https://github.com/hyattpd/Prodigal/archive/v2.6.2.tar.gz")
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30
20
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open("#{ROOT_path}/v2.6.2.tar.gz", "wb") do |file|
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@@ -52,11 +42,7 @@ if ! File.exists? "#{ROOT_path}/prodigal.linux"
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52
42
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puts "See https://github.com/hyattpd/Prodigal"
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53
43
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puts "The Licence is GPLv3"
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54
44
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installProdigal
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55
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-
puts "Prodigal successfully installed"
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45
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+
puts "Prodigal successfully installed in #{ROOT_path}/Prodigal-2.6.2"
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56
46
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puts ""
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57
47
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58
48
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end
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59
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-
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60
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-
# Main
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61
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-
# Dir.mkdir("Prodigal-Output") if ! File.exists? "Prodigal-Output"
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62
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-
# system("#{ROOT_path}/prodigal.linux -a Prodigal-Output/Proteins.fa -d Prodigal-Output/Genes.fa -o Prodigal-Output/Genbanks.gbk -i #{ARGV[0]}")
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