aws-sdk-omics 1.63.0 → 1.65.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -406,6 +406,83 @@ module Aws::Omics
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  include Aws::Structure
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  end
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+ # A summary of a batch returned by `ListBatch`.
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+ #
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+ # @!attribute [rw] id
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+ # The batch identifier.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] name
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+ # The batch name.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] status
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+ # The current batch status.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] created_at
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+ # The timestamp when the batch was created.
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+ # @return [Time]
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+ #
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+ # @!attribute [rw] total_runs
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+ # The total number of runs in the batch.
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+ # @return [Integer]
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+ #
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+ # @!attribute [rw] workflow_id
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+ # The identifier of the workflow used for the batch.
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+ # @return [String]
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+ #
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+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/BatchListItem AWS API Documentation
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+ #
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+ class BatchListItem < Struct.new(
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+ :id,
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+ :name,
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+ :status,
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+ :created_at,
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+ :total_runs,
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+ :workflow_id)
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+ SENSITIVE = []
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+ include Aws::Structure
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+ end
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+
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+ # A union type representing per-run configurations for the batch.
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+ # Specify exactly one of the following members.
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+ #
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+ # @note BatchRunSettings is a union - when making an API calls you must set exactly one of the members.
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+ #
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+ # @!attribute [rw] inline_settings
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+ # A list of per-run configurations provided inline in the request.
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+ # Each entry must include a unique `runSettingId`. Supports up to 100
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+ # entries. For batches with more than 100 runs, use `s3UriSettings`.
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+ # @return [Array<Types::InlineSetting>]
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+ #
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+ # @!attribute [rw] s3_uri_settings
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+ # An Amazon S3 URI pointing to a JSON file containing per-run
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+ # configurations. The file must be a JSON array in the same format as
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+ # `inlineSettings`. Supports up to 100,000 run configurations. The
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+ # maximum file size is 6 GB.
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+ #
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+ # The IAM service role in `roleArn` must have read access to this S3
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+ # object. HealthOmics validates access to the file during the
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+ # synchronous API call and records the file's ETag. If the file is
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+ # modified after submission, the batch fails.
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+ # @return [String]
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+ #
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+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/BatchRunSettings AWS API Documentation
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+ #
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+ class BatchRunSettings < Struct.new(
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+ :inline_settings,
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+ :s3_uri_settings,
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+ :unknown)
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+ SENSITIVE = []
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+ include Aws::Structure
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+ include Aws::Structure::Union
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+
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+ class InlineSettings < BatchRunSettings; end
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+ class S3UriSettings < BatchRunSettings; end
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+ class Unknown < BatchRunSettings; end
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+ end
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+
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  # @!attribute [rw] job_id
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  # The job's ID.
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  # @return [String]
@@ -422,6 +499,22 @@ module Aws::Omics
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  #
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  class CancelAnnotationImportResponse < Aws::EmptyStructure; end
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+ # @!attribute [rw] batch_id
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+ # The identifier portion of the run batch ARN.
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+ # @return [String]
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+ #
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+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CancelRunBatchRequest AWS API Documentation
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+ #
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+ class CancelRunBatchRequest < Struct.new(
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+ :batch_id)
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+ SENSITIVE = []
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+ include Aws::Structure
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+ end
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+
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+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CancelRunBatchResponse AWS API Documentation
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+ #
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+ class CancelRunBatchResponse < Aws::EmptyStructure; end
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+
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  # @!attribute [rw] id
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  # The run's ID.
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  # @return [String]
@@ -511,6 +604,64 @@ module Aws::Omics
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  include Aws::Structure
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  end
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+ # Minimal details for a configuration resource.
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+ #
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+ # @!attribute [rw] name
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+ # User-friendly name for the configuration.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] arn
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+ # Unique resource identifier for the configuration.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] uuid
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+ # Unique identifier for the configuration.
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+ # @return [String]
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+ #
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+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ConfigurationDetails AWS API Documentation
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+ #
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+ class ConfigurationDetails < Struct.new(
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+ :name,
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+ :arn,
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+ :uuid)
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+ SENSITIVE = []
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+ include Aws::Structure
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+ end
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+
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+ # Configuration list item with summary information.
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+ #
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+ # @!attribute [rw] arn
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+ # Unique resource identifier for the configuration.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] name
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+ # User-friendly name for the configuration.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] description
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+ # Description for the configuration.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] status
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+ # Current configuration status.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] creation_time
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+ # Configuration creation timestamp.
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+ # @return [Time]
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+ #
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+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ConfigurationListItem AWS API Documentation
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+ #
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+ class ConfigurationListItem < Struct.new(
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+ :arn,
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+ :name,
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+ :description,
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+ :status,
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+ :creation_time)
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+ SENSITIVE = []
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+ include Aws::Structure
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+ end
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+
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  # The request cannot be applied to the target resource in its current
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  # state.
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  #
@@ -729,6 +880,90 @@ module Aws::Omics
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  include Aws::Structure
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  end
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+ # @!attribute [rw] name
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+ # User-friendly name for the configuration.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] description
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+ # Optional description for the configuration.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] run_configurations
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+ # Required run-specific configurations.
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+ # @return [Types::RunConfigurations]
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+ #
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+ # @!attribute [rw] tags
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+ # Optional tags for the configuration.
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+ # @return [Hash<String,String>]
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+ #
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+ # @!attribute [rw] request_id
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+ # Optional request idempotency token. If not specified, a universally
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+ # unique identifier (UUID) will be automatically generated for the
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+ # request.
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+ #
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+ # **A suitable default value is auto-generated.** You should normally
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+ # not need to pass this option.
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+ # @return [String]
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+ #
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+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateConfigurationRequest AWS API Documentation
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+ #
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+ class CreateConfigurationRequest < Struct.new(
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+ :name,
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+ :description,
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+ :run_configurations,
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+ :tags,
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+ :request_id)
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+ SENSITIVE = []
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+ include Aws::Structure
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+ end
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+
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+ # @!attribute [rw] arn
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+ # Unique resource identifier for the configuration.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] uuid
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+ # Unique identifier for the configuration.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] name
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+ # User-friendly name for the configuration.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] description
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+ # Description for the configuration.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] run_configurations
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+ # Run-specific configurations.
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+ # @return [Types::RunConfigurationsResponse]
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+ #
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+ # @!attribute [rw] status
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+ # Current configuration status.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] creation_time
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+ # Configuration creation timestamp.
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+ # @return [Time]
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+ #
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+ # @!attribute [rw] tags
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+ # Tags for the configuration.
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+ # @return [Hash<String,String>]
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+ #
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+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateConfigurationResponse AWS API Documentation
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+ #
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+ class CreateConfigurationResponse < Struct.new(
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+ :arn,
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+ :uuid,
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+ :name,
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+ :description,
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+ :run_configurations,
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+ :status,
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+ :creation_time,
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+ :tags)
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+ SENSITIVE = []
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+ include Aws::Structure
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+ end
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+
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  # @!attribute [rw] sequence_store_id
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  # The sequence store ID for the store that is the destination of the
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  # multipart uploads.
@@ -1351,10 +1586,20 @@ module Aws::Omics
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  # @return [String]
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  #
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  # @!attribute [rw] engine
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- # The workflow engine for the workflow. This is only required if you
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- # have workflow definition files from more than one engine in your zip
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- # file. Otherwise, the service can detect the engine automatically
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- # from your workflow definition.
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+ # The workflow engine for the workflow. By default, Amazon Web
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+ # Services HealthOmics detects the engine automatically from your
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+ # workflow definition. Provide a value if you have workflow definition
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+ # files from more than one engine in your zip file, or to use WDL
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+ # lenient.
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+ #
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+ # WDL lenient is designed to handle workflows migrated from Cromwell.
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+ # It supports customer Cromwell directives and some non-conformant
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+ # logic. For details, see [Implicit type conversion in WDL lenient][1]
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+ # in the *Amazon Web Services HealthOmics User Guide*.
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+ #
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+ #
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+ #
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+ # [1]: https://docs.aws.amazon.com/omics/latest/dev/workflow-wdl-type-conversion.html
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  # @return [String]
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1604
  #
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  # @!attribute [rw] definition_zip
@@ -1786,6 +2031,125 @@ module Aws::Omics
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  include Aws::Structure
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  end
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2033
 
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+ # Shared configuration applied to all runs in a batch. Fields specified
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+ # in a per-run `InlineSetting` entry override the corresponding fields
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+ # in this object for that run. The `parameters` and `runTags` fields are
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+ # merged rather than replaced — run-specific values take precedence when
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+ # keys overlap.
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+ #
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+ # @!attribute [rw] workflow_id
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+ # The identifier of the workflow to run.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] workflow_type
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+ # The type of the originating workflow. Batch runs are not supported
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+ # with `READY2RUN` workflows.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] role_arn
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+ # The IAM role ARN that grants HealthOmics permissions to access
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+ # required AWS resources such as Amazon S3 and CloudWatch. The role
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+ # must have the same permissions required for individual `StartRun`
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+ # calls.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] name
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+ # An optional user-friendly name applied to each workflow run. Can be
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+ # overridden per run.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] cache_id
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+ # The identifier of the run cache to associate with the runs.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] cache_behavior
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+ # The cache behavior for the runs. Requires `cacheId` to be set.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] run_group_id
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+ # The ID of the run group to contain all workflow runs in the batch.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] priority
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+ # An integer priority for the workflow runs. Higher values correspond
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+ # to higher priority. A value of 0 corresponds to the lowest priority.
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+ # Can be overridden per run.
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+ # @return [Integer]
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+ #
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+ # @!attribute [rw] parameters
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+ # Workflow parameter names and values shared across all runs. Merged
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+ # with per-run parameters; run-specific values take precedence when
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+ # keys overlap. Can be overridden per run.
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+ # @return [Hash,Array,String,Numeric,Boolean]
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+ #
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+ # @!attribute [rw] storage_capacity
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+ # The filesystem size in gibibytes (GiB) provisioned for each workflow
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+ # run and shared by all tasks in that run. Defaults to 1200 GiB if not
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+ # specified.
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+ # @return [Integer]
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+ #
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+ # @!attribute [rw] output_uri
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+ # The destination S3 URI for workflow outputs. Must begin with
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+ # `s3://`. The `roleArn` must grant write permissions to this bucket.
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+ # Can be overridden per run.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] log_level
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+ # The verbosity level for CloudWatch Logs emitted during each run.
2099
+ # @return [String]
2100
+ #
2101
+ # @!attribute [rw] run_tags
2102
+ # AWS tags to associate with each workflow run. Merged with per-run
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+ # `runTags`; run-specific values take precedence when keys overlap.
2104
+ # @return [Hash<String,String>]
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+ #
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+ # @!attribute [rw] retention_mode
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+ # The retention behavior for runs after completion.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] storage_type
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+ # The storage type for the workflow runs.
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+ # @return [String]
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+ #
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+ # @!attribute [rw] workflow_owner_id
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+ # The AWS account ID of the workflow owner, used for cross-account
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+ # workflow sharing.
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+ # @return [String]
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+ #
2119
+ # @!attribute [rw] output_bucket_owner_id
2120
+ # The expected AWS account ID of the owner of the output S3 bucket.
2121
+ # Can be overridden per run.
2122
+ # @return [String]
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+ #
2124
+ # @!attribute [rw] workflow_version_name
2125
+ # The version name of the specified workflow.
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+ # @return [String]
2127
+ #
2128
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DefaultRunSetting AWS API Documentation
2129
+ #
2130
+ class DefaultRunSetting < Struct.new(
2131
+ :workflow_id,
2132
+ :workflow_type,
2133
+ :role_arn,
2134
+ :name,
2135
+ :cache_id,
2136
+ :cache_behavior,
2137
+ :run_group_id,
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+ :priority,
2139
+ :parameters,
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+ :storage_capacity,
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+ :output_uri,
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+ :log_level,
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+ :run_tags,
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+ :retention_mode,
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+ :storage_type,
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+ :workflow_owner_id,
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+ :output_bucket_owner_id,
2148
+ :workflow_version_name)
2149
+ SENSITIVE = []
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+ include Aws::Structure
2151
+ end
2152
+
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2153
  # Contains information about a source code repository that hosts the
1790
2154
  # workflow definition files.
1791
2155
  #
@@ -1925,6 +2289,30 @@ module Aws::Omics
1925
2289
  include Aws::Structure
1926
2290
  end
1927
2291
 
2292
+ # @!attribute [rw] batch_id
2293
+ # The identifier portion of the run batch ARN.
2294
+ # @return [String]
2295
+ #
2296
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteBatchRequest AWS API Documentation
2297
+ #
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+ class DeleteBatchRequest < Struct.new(
2299
+ :batch_id)
2300
+ SENSITIVE = []
2301
+ include Aws::Structure
2302
+ end
2303
+
2304
+ # @!attribute [rw] name
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+ # Configuration name to delete.
2306
+ # @return [String]
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+ #
2308
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteConfigurationRequest AWS API Documentation
2309
+ #
2310
+ class DeleteConfigurationRequest < Struct.new(
2311
+ :name)
2312
+ SENSITIVE = []
2313
+ include Aws::Structure
2314
+ end
2315
+
1928
2316
  # @!attribute [rw] id
1929
2317
  # The reference's ID.
1930
2318
  # @return [String]
@@ -1962,6 +2350,22 @@ module Aws::Omics
1962
2350
  #
1963
2351
  class DeleteReferenceStoreResponse < Aws::EmptyStructure; end
1964
2352
 
2353
+ # @!attribute [rw] batch_id
2354
+ # The identifier portion of the run batch ARN.
2355
+ # @return [String]
2356
+ #
2357
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteRunBatchRequest AWS API Documentation
2358
+ #
2359
+ class DeleteRunBatchRequest < Struct.new(
2360
+ :batch_id)
2361
+ SENSITIVE = []
2362
+ include Aws::Structure
2363
+ end
2364
+
2365
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteRunBatchResponse AWS API Documentation
2366
+ #
2367
+ class DeleteRunBatchResponse < Aws::EmptyStructure; end
2368
+
1965
2369
  # @!attribute [rw] id
1966
2370
  # Run cache identifier for the cache you want to delete.
1967
2371
  # @return [String]
@@ -2595,6 +2999,164 @@ module Aws::Omics
2595
2999
  include Aws::Structure
2596
3000
  end
2597
3001
 
3002
+ # @!attribute [rw] batch_id
3003
+ # The identifier portion of the run batch ARN.
3004
+ # @return [String]
3005
+ #
3006
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetBatchRequest AWS API Documentation
3007
+ #
3008
+ class GetBatchRequest < Struct.new(
3009
+ :batch_id)
3010
+ SENSITIVE = []
3011
+ include Aws::Structure
3012
+ end
3013
+
3014
+ # @!attribute [rw] id
3015
+ # The identifier portion of the run batch ARN.
3016
+ # @return [String]
3017
+ #
3018
+ # @!attribute [rw] arn
3019
+ # The unique ARN of the run batch.
3020
+ # @return [String]
3021
+ #
3022
+ # @!attribute [rw] uuid
3023
+ # The universally unique identifier (UUID) for the run batch.
3024
+ # @return [String]
3025
+ #
3026
+ # @!attribute [rw] name
3027
+ # The optional user-friendly name of the batch.
3028
+ # @return [String]
3029
+ #
3030
+ # @!attribute [rw] status
3031
+ # The current status of the run batch.
3032
+ # @return [String]
3033
+ #
3034
+ # @!attribute [rw] tags
3035
+ # AWS tags associated with the run batch.
3036
+ # @return [Hash<String,String>]
3037
+ #
3038
+ # @!attribute [rw] total_runs
3039
+ # The total number of runs in the batch.
3040
+ # @return [Integer]
3041
+ #
3042
+ # @!attribute [rw] default_run_setting
3043
+ # The shared configuration applied to all runs in the batch. See
3044
+ # `DefaultRunSetting`.
3045
+ # @return [Types::DefaultRunSetting]
3046
+ #
3047
+ # @!attribute [rw] submission_summary
3048
+ # A summary of run submission outcomes. See `SubmissionSummary`.
3049
+ # @return [Types::SubmissionSummary]
3050
+ #
3051
+ # @!attribute [rw] run_summary
3052
+ # A summary of run execution states. Run execution counts are
3053
+ # eventually consistent and may lag behind actual run states. Final
3054
+ # counts are accurate once the batch reaches `PROCESSED` status. See
3055
+ # `RunSummary`.
3056
+ # @return [Types::RunSummary]
3057
+ #
3058
+ # @!attribute [rw] creation_time
3059
+ # The timestamp when the batch was created.
3060
+ # @return [Time]
3061
+ #
3062
+ # @!attribute [rw] submitted_time
3063
+ # The timestamp when all run submissions completed.
3064
+ # @return [Time]
3065
+ #
3066
+ # @!attribute [rw] processed_time
3067
+ # The timestamp when all run executions completed.
3068
+ # @return [Time]
3069
+ #
3070
+ # @!attribute [rw] failed_time
3071
+ # The timestamp when the batch transitioned to a `FAILED` status.
3072
+ # @return [Time]
3073
+ #
3074
+ # @!attribute [rw] failure_reason
3075
+ # A description of the batch failure. Present only when status is
3076
+ # `FAILED`.
3077
+ # @return [String]
3078
+ #
3079
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetBatchResponse AWS API Documentation
3080
+ #
3081
+ class GetBatchResponse < Struct.new(
3082
+ :id,
3083
+ :arn,
3084
+ :uuid,
3085
+ :name,
3086
+ :status,
3087
+ :tags,
3088
+ :total_runs,
3089
+ :default_run_setting,
3090
+ :submission_summary,
3091
+ :run_summary,
3092
+ :creation_time,
3093
+ :submitted_time,
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+ :processed_time,
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+ :failed_time,
3096
+ :failure_reason)
3097
+ SENSITIVE = []
3098
+ include Aws::Structure
3099
+ end
3100
+
3101
+ # @!attribute [rw] name
3102
+ # Configuration name to retrieve.
3103
+ # @return [String]
3104
+ #
3105
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetConfigurationRequest AWS API Documentation
3106
+ #
3107
+ class GetConfigurationRequest < Struct.new(
3108
+ :name)
3109
+ SENSITIVE = []
3110
+ include Aws::Structure
3111
+ end
3112
+
3113
+ # @!attribute [rw] arn
3114
+ # Unique resource identifier for the configuration.
3115
+ # @return [String]
3116
+ #
3117
+ # @!attribute [rw] uuid
3118
+ # Unique identifier for the configuration.
3119
+ # @return [String]
3120
+ #
3121
+ # @!attribute [rw] name
3122
+ # User-friendly name for the configuration.
3123
+ # @return [String]
3124
+ #
3125
+ # @!attribute [rw] description
3126
+ # Description for the configuration.
3127
+ # @return [String]
3128
+ #
3129
+ # @!attribute [rw] run_configurations
3130
+ # Run-specific configurations.
3131
+ # @return [Types::RunConfigurationsResponse]
3132
+ #
3133
+ # @!attribute [rw] status
3134
+ # Current configuration status.
3135
+ # @return [String]
3136
+ #
3137
+ # @!attribute [rw] creation_time
3138
+ # Configuration creation timestamp.
3139
+ # @return [Time]
3140
+ #
3141
+ # @!attribute [rw] tags
3142
+ # Tags for the configuration.
3143
+ # @return [Hash<String,String>]
3144
+ #
3145
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetConfigurationResponse AWS API Documentation
3146
+ #
3147
+ class GetConfigurationResponse < Struct.new(
3148
+ :arn,
3149
+ :uuid,
3150
+ :name,
3151
+ :description,
3152
+ :run_configurations,
3153
+ :status,
3154
+ :creation_time,
3155
+ :tags)
3156
+ SENSITIVE = []
3157
+ include Aws::Structure
3158
+ end
3159
+
2598
3160
  # @!attribute [rw] id
2599
3161
  # The job's ID.
2600
3162
  # @return [String]
@@ -3373,6 +3935,10 @@ module Aws::Omics
3373
3935
  # The run's group ID.
3374
3936
  # @return [String]
3375
3937
  #
3938
+ # @!attribute [rw] batch_id
3939
+ # The run's batch ID.
3940
+ # @return [String]
3941
+ #
3376
3942
  # @!attribute [rw] priority
3377
3943
  # The run's priority.
3378
3944
  # @return [Integer]
@@ -3471,6 +4037,19 @@ module Aws::Omics
3471
4037
  # The universally unique identifier (UUID) value for the workflow.
3472
4038
  # @return [String]
3473
4039
  #
4040
+ # @!attribute [rw] networking_mode
4041
+ # Configuration for run networking behavior. If absent, this will
4042
+ # default to RESTRICTED.
4043
+ # @return [String]
4044
+ #
4045
+ # @!attribute [rw] configuration
4046
+ # Configuration details for the workflow run.
4047
+ # @return [Types::ConfigurationDetails]
4048
+ #
4049
+ # @!attribute [rw] vpc_config
4050
+ # VPC configuration for the workflow run.
4051
+ # @return [Types::VpcConfigResponse]
4052
+ #
3474
4053
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetRunResponse AWS API Documentation
3475
4054
  #
3476
4055
  class GetRunResponse < Struct.new(
@@ -3486,6 +4065,7 @@ module Aws::Omics
3486
4065
  :role_arn,
3487
4066
  :name,
3488
4067
  :run_group_id,
4068
+ :batch_id,
3489
4069
  :priority,
3490
4070
  :definition,
3491
4071
  :digest,
@@ -3509,7 +4089,10 @@ module Aws::Omics
3509
4089
  :storage_type,
3510
4090
  :workflow_owner_id,
3511
4091
  :workflow_version_name,
3512
- :workflow_uuid)
4092
+ :workflow_uuid,
4093
+ :networking_mode,
4094
+ :configuration,
4095
+ :vpc_config)
3513
4096
  SENSITIVE = []
3514
4097
  include Aws::Structure
3515
4098
  end
@@ -4536,9 +5119,60 @@ module Aws::Omics
4536
5119
  :status,
4537
5120
  :status_message,
4538
5121
  :name,
4539
- :description,
4540
- :tags,
4541
- :reference_id)
5122
+ :description,
5123
+ :tags,
5124
+ :reference_id)
5125
+ SENSITIVE = []
5126
+ include Aws::Structure
5127
+ end
5128
+
5129
+ # A per-run configuration that overrides or merges with fields from
5130
+ # `DefaultRunSetting` for a specific run.
5131
+ #
5132
+ # @!attribute [rw] run_setting_id
5133
+ # A customer-provided unique identifier for this run configuration
5134
+ # within the batch. After submission, use `ListRunsInBatch` to map
5135
+ # each `runSettingId` to the HealthOmics-generated `runId`.
5136
+ # @return [String]
5137
+ #
5138
+ # @!attribute [rw] name
5139
+ # An optional user-friendly name for this run.
5140
+ # @return [String]
5141
+ #
5142
+ # @!attribute [rw] output_uri
5143
+ # Override the destination S3 URI for this run's outputs.
5144
+ # @return [String]
5145
+ #
5146
+ # @!attribute [rw] priority
5147
+ # Override the priority for this run.
5148
+ # @return [Integer]
5149
+ #
5150
+ # @!attribute [rw] parameters
5151
+ # Per-run workflow parameters. Merged with
5152
+ # `defaultRunSetting.parameters`; values in this object take
5153
+ # precedence when keys overlap.
5154
+ # @return [Hash,Array,String,Numeric,Boolean]
5155
+ #
5156
+ # @!attribute [rw] output_bucket_owner_id
5157
+ # The expected AWS account ID of the owner of the output S3 bucket for
5158
+ # this run.
5159
+ # @return [String]
5160
+ #
5161
+ # @!attribute [rw] run_tags
5162
+ # Per-run AWS tags. Merged with `defaultRunSetting.runTags`; values in
5163
+ # this object take precedence when keys overlap.
5164
+ # @return [Hash<String,String>]
5165
+ #
5166
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/InlineSetting AWS API Documentation
5167
+ #
5168
+ class InlineSetting < Struct.new(
5169
+ :run_setting_id,
5170
+ :name,
5171
+ :output_uri,
5172
+ :priority,
5173
+ :parameters,
5174
+ :output_bucket_owner_id,
5175
+ :run_tags)
4542
5176
  SENSITIVE = []
4543
5177
  include Aws::Structure
4544
5178
  end
@@ -4742,6 +5376,91 @@ module Aws::Omics
4742
5376
  include Aws::Structure
4743
5377
  end
4744
5378
 
5379
+ # @!attribute [rw] max_items
5380
+ # The maximum number of batches to return. If not specified, defaults
5381
+ # to 100.
5382
+ # @return [Integer]
5383
+ #
5384
+ # @!attribute [rw] starting_token
5385
+ # A pagination token returned from a prior `ListBatch` call.
5386
+ # @return [String]
5387
+ #
5388
+ # @!attribute [rw] status
5389
+ # Filter batches by status.
5390
+ # @return [String]
5391
+ #
5392
+ # @!attribute [rw] name
5393
+ # Filter batches by name.
5394
+ # @return [String]
5395
+ #
5396
+ # @!attribute [rw] run_group_id
5397
+ # Filter batches by run group ID.
5398
+ # @return [String]
5399
+ #
5400
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListBatchRequest AWS API Documentation
5401
+ #
5402
+ class ListBatchRequest < Struct.new(
5403
+ :max_items,
5404
+ :starting_token,
5405
+ :status,
5406
+ :name,
5407
+ :run_group_id)
5408
+ SENSITIVE = []
5409
+ include Aws::Structure
5410
+ end
5411
+
5412
+ # @!attribute [rw] items
5413
+ # A list of batch summary objects. See `BatchListItem`.
5414
+ # @return [Array<Types::BatchListItem>]
5415
+ #
5416
+ # @!attribute [rw] next_token
5417
+ # A pagination token to retrieve the next page of results. Absent when
5418
+ # no further results are available.
5419
+ # @return [String]
5420
+ #
5421
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListBatchResponse AWS API Documentation
5422
+ #
5423
+ class ListBatchResponse < Struct.new(
5424
+ :items,
5425
+ :next_token)
5426
+ SENSITIVE = []
5427
+ include Aws::Structure
5428
+ end
5429
+
5430
+ # @!attribute [rw] max_results
5431
+ # Maximum number of results to return.
5432
+ # @return [Integer]
5433
+ #
5434
+ # @!attribute [rw] starting_token
5435
+ # Pagination token for retrieving next page of results.
5436
+ # @return [String]
5437
+ #
5438
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListConfigurationsRequest AWS API Documentation
5439
+ #
5440
+ class ListConfigurationsRequest < Struct.new(
5441
+ :max_results,
5442
+ :starting_token)
5443
+ SENSITIVE = []
5444
+ include Aws::Structure
5445
+ end
5446
+
5447
+ # @!attribute [rw] items
5448
+ # List of configuration items.
5449
+ # @return [Array<Types::ConfigurationListItem>]
5450
+ #
5451
+ # @!attribute [rw] next_token
5452
+ # Token for retrieving next page of results.
5453
+ # @return [String]
5454
+ #
5455
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListConfigurationsResponse AWS API Documentation
5456
+ #
5457
+ class ListConfigurationsResponse < Struct.new(
5458
+ :items,
5459
+ :next_token)
5460
+ SENSITIVE = []
5461
+ include Aws::Structure
5462
+ end
5463
+
4745
5464
  # @!attribute [rw] sequence_store_id
4746
5465
  # The Sequence Store ID used for the multipart uploads.
4747
5466
  # @return [String]
@@ -5276,6 +5995,61 @@ module Aws::Omics
5276
5995
  include Aws::Structure
5277
5996
  end
5278
5997
 
5998
+ # @!attribute [rw] batch_id
5999
+ # The identifier portion of the run batch ARN.
6000
+ # @return [String]
6001
+ #
6002
+ # @!attribute [rw] max_items
6003
+ # The maximum number of runs to return.
6004
+ # @return [Integer]
6005
+ #
6006
+ # @!attribute [rw] starting_token
6007
+ # A pagination token returned from a prior `ListRunsInBatch` call.
6008
+ # @return [String]
6009
+ #
6010
+ # @!attribute [rw] submission_status
6011
+ # Filter runs by submission status.
6012
+ # @return [String]
6013
+ #
6014
+ # @!attribute [rw] run_setting_id
6015
+ # Filter runs by the customer-provided run setting ID.
6016
+ # @return [String]
6017
+ #
6018
+ # @!attribute [rw] run_id
6019
+ # Filter runs by the HealthOmics-generated run ID.
6020
+ # @return [String]
6021
+ #
6022
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunsInBatchRequest AWS API Documentation
6023
+ #
6024
+ class ListRunsInBatchRequest < Struct.new(
6025
+ :batch_id,
6026
+ :max_items,
6027
+ :starting_token,
6028
+ :submission_status,
6029
+ :run_setting_id,
6030
+ :run_id)
6031
+ SENSITIVE = []
6032
+ include Aws::Structure
6033
+ end
6034
+
6035
+ # @!attribute [rw] runs
6036
+ # A list of run entries in the batch. See `RunBatchListItem`.
6037
+ # @return [Array<Types::RunBatchListItem>]
6038
+ #
6039
+ # @!attribute [rw] next_token
6040
+ # A pagination token to retrieve the next page of results. Absent when
6041
+ # the last run has been returned.
6042
+ # @return [String]
6043
+ #
6044
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunsInBatchResponse AWS API Documentation
6045
+ #
6046
+ class ListRunsInBatchResponse < Struct.new(
6047
+ :runs,
6048
+ :next_token)
6049
+ SENSITIVE = []
6050
+ include Aws::Structure
6051
+ end
6052
+
5279
6053
  # @!attribute [rw] name
5280
6054
  # Filter the list by run name.
5281
6055
  # @return [String]
@@ -5284,6 +6058,10 @@ module Aws::Omics
5284
6058
  # Filter the list by run group ID.
5285
6059
  # @return [String]
5286
6060
  #
6061
+ # @!attribute [rw] batch_id
6062
+ # Filter by batch ID.
6063
+ # @return [String]
6064
+ #
5287
6065
  # @!attribute [rw] starting_token
5288
6066
  # Specify the pagination token from a previous request to retrieve the
5289
6067
  # next page of results.
@@ -5302,6 +6080,7 @@ module Aws::Omics
5302
6080
  class ListRunsRequest < Struct.new(
5303
6081
  :name,
5304
6082
  :run_group_id,
6083
+ :batch_id,
5305
6084
  :starting_token,
5306
6085
  :max_results,
5307
6086
  :status)
@@ -6354,6 +7133,55 @@ module Aws::Omics
6354
7133
  include Aws::Structure
6355
7134
  end
6356
7135
 
7136
+ # A single run entry returned by `ListRunsInBatch`.
7137
+ #
7138
+ # @!attribute [rw] run_setting_id
7139
+ # The customer-provided identifier for the run configuration. Use this
7140
+ # to correlate results back to the input configuration provided in
7141
+ # `inlineSettings` or `s3UriSettings`.
7142
+ # @return [String]
7143
+ #
7144
+ # @!attribute [rw] run_id
7145
+ # The HealthOmics-generated identifier for the workflow run. Empty if
7146
+ # submission failed.
7147
+ # @return [String]
7148
+ #
7149
+ # @!attribute [rw] run_internal_uuid
7150
+ # The universally unique identifier (UUID) for the run.
7151
+ # @return [String]
7152
+ #
7153
+ # @!attribute [rw] run_arn
7154
+ # The unique ARN of the workflow run.
7155
+ # @return [String]
7156
+ #
7157
+ # @!attribute [rw] submission_status
7158
+ # The submission outcome for this run.
7159
+ # @return [String]
7160
+ #
7161
+ # @!attribute [rw] submission_failure_reason
7162
+ # The error category for a failed submission. See the run-level
7163
+ # failure table in the HealthOmics User Guide for details on each
7164
+ # value.
7165
+ # @return [String]
7166
+ #
7167
+ # @!attribute [rw] submission_failure_message
7168
+ # A detailed message describing the submission failure.
7169
+ # @return [String]
7170
+ #
7171
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/RunBatchListItem AWS API Documentation
7172
+ #
7173
+ class RunBatchListItem < Struct.new(
7174
+ :run_setting_id,
7175
+ :run_id,
7176
+ :run_internal_uuid,
7177
+ :run_arn,
7178
+ :submission_status,
7179
+ :submission_failure_reason,
7180
+ :submission_failure_message)
7181
+ SENSITIVE = []
7182
+ include Aws::Structure
7183
+ end
7184
+
6357
7185
  # List entry for one run cache.
6358
7186
  #
6359
7187
  # @!attribute [rw] arn
@@ -6399,6 +7227,34 @@ module Aws::Omics
6399
7227
  include Aws::Structure
6400
7228
  end
6401
7229
 
7230
+ # Run-specific configuration settings.
7231
+ #
7232
+ # @!attribute [rw] vpc_config
7233
+ # VPC configuration for workflow runs.
7234
+ # @return [Types::VpcConfig]
7235
+ #
7236
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/RunConfigurations AWS API Documentation
7237
+ #
7238
+ class RunConfigurations < Struct.new(
7239
+ :vpc_config)
7240
+ SENSITIVE = []
7241
+ include Aws::Structure
7242
+ end
7243
+
7244
+ # Run-specific configuration settings with computed values.
7245
+ #
7246
+ # @!attribute [rw] vpc_config
7247
+ # VPC configuration for workflow runs with computed VPC ID.
7248
+ # @return [Types::VpcConfigResponse]
7249
+ #
7250
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/RunConfigurationsResponse AWS API Documentation
7251
+ #
7252
+ class RunConfigurationsResponse < Struct.new(
7253
+ :vpc_config)
7254
+ SENSITIVE = []
7255
+ include Aws::Structure
7256
+ end
7257
+
6402
7258
  # A run group.
6403
7259
  #
6404
7260
  # @!attribute [rw] arn
@@ -6466,6 +7322,10 @@ module Aws::Omics
6466
7322
  # The run's workflow ID.
6467
7323
  # @return [String]
6468
7324
  #
7325
+ # @!attribute [rw] batch_id
7326
+ # The run's batch ID.
7327
+ # @return [String]
7328
+ #
6469
7329
  # @!attribute [rw] name
6470
7330
  # The run's name.
6471
7331
  # @return [String]
@@ -6507,6 +7367,7 @@ module Aws::Omics
6507
7367
  :id,
6508
7368
  :status,
6509
7369
  :workflow_id,
7370
+ :batch_id,
6510
7371
  :name,
6511
7372
  :priority,
6512
7373
  :storage_capacity,
@@ -6538,6 +7399,55 @@ module Aws::Omics
6538
7399
  include Aws::Structure
6539
7400
  end
6540
7401
 
7402
+ # A summary of the runs in a batch.
7403
+ #
7404
+ # @!attribute [rw] pending_run_count
7405
+ # The number of pending runs.
7406
+ # @return [Integer]
7407
+ #
7408
+ # @!attribute [rw] starting_run_count
7409
+ # The number of starting runs.
7410
+ # @return [Integer]
7411
+ #
7412
+ # @!attribute [rw] running_run_count
7413
+ # The number of running runs.
7414
+ # @return [Integer]
7415
+ #
7416
+ # @!attribute [rw] stopping_run_count
7417
+ # The number of stopping runs.
7418
+ # @return [Integer]
7419
+ #
7420
+ # @!attribute [rw] completed_run_count
7421
+ # The number of completed runs.
7422
+ # @return [Integer]
7423
+ #
7424
+ # @!attribute [rw] deleted_run_count
7425
+ # The number of deleted runs.
7426
+ # @return [Integer]
7427
+ #
7428
+ # @!attribute [rw] failed_run_count
7429
+ # The number of failed runs.
7430
+ # @return [Integer]
7431
+ #
7432
+ # @!attribute [rw] cancelled_run_count
7433
+ # The number of cancelled runs.
7434
+ # @return [Integer]
7435
+ #
7436
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/RunSummary AWS API Documentation
7437
+ #
7438
+ class RunSummary < Struct.new(
7439
+ :pending_run_count,
7440
+ :starting_run_count,
7441
+ :running_run_count,
7442
+ :stopping_run_count,
7443
+ :completed_run_count,
7444
+ :deleted_run_count,
7445
+ :failed_run_count,
7446
+ :cancelled_run_count)
7447
+ SENSITIVE = []
7448
+ include Aws::Structure
7449
+ end
7450
+
6541
7451
  # S3 access configuration parameters.
6542
7452
  #
6543
7453
  # @!attribute [rw] access_log_location
@@ -7230,6 +8140,78 @@ module Aws::Omics
7230
8140
  include Aws::Structure
7231
8141
  end
7232
8142
 
8143
+ # @!attribute [rw] batch_name
8144
+ # An optional user-friendly name for the run batch.
8145
+ # @return [String]
8146
+ #
8147
+ # @!attribute [rw] request_id
8148
+ # A client token used to deduplicate retry requests and prevent
8149
+ # duplicate batches from being created.
8150
+ #
8151
+ # **A suitable default value is auto-generated.** You should normally
8152
+ # not need to pass this option.
8153
+ # @return [String]
8154
+ #
8155
+ # @!attribute [rw] tags
8156
+ # AWS tags to associate with the batch resource. These tags are not
8157
+ # inherited by individual runs. To tag individual runs, use
8158
+ # `defaultRunSetting.runTags`.
8159
+ # @return [Hash<String,String>]
8160
+ #
8161
+ # @!attribute [rw] default_run_setting
8162
+ # Shared configuration applied to all runs in the batch. See
8163
+ # `DefaultRunSetting`.
8164
+ # @return [Types::DefaultRunSetting]
8165
+ #
8166
+ # @!attribute [rw] batch_run_settings
8167
+ # The individual run configurations. Specify exactly one of
8168
+ # `inlineSettings` or `s3UriSettings`. See `BatchRunSettings`.
8169
+ # @return [Types::BatchRunSettings]
8170
+ #
8171
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartRunBatchRequest AWS API Documentation
8172
+ #
8173
+ class StartRunBatchRequest < Struct.new(
8174
+ :batch_name,
8175
+ :request_id,
8176
+ :tags,
8177
+ :default_run_setting,
8178
+ :batch_run_settings)
8179
+ SENSITIVE = []
8180
+ include Aws::Structure
8181
+ end
8182
+
8183
+ # @!attribute [rw] id
8184
+ # The identifier portion of the run batch ARN.
8185
+ # @return [String]
8186
+ #
8187
+ # @!attribute [rw] arn
8188
+ # The unique ARN of the run batch.
8189
+ # @return [String]
8190
+ #
8191
+ # @!attribute [rw] status
8192
+ # The initial status of the run batch.
8193
+ # @return [String]
8194
+ #
8195
+ # @!attribute [rw] uuid
8196
+ # The universally unique identifier (UUID) for the run batch.
8197
+ # @return [String]
8198
+ #
8199
+ # @!attribute [rw] tags
8200
+ # AWS tags associated with the run batch.
8201
+ # @return [Hash<String,String>]
8202
+ #
8203
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartRunBatchResponse AWS API Documentation
8204
+ #
8205
+ class StartRunBatchResponse < Struct.new(
8206
+ :id,
8207
+ :arn,
8208
+ :status,
8209
+ :uuid,
8210
+ :tags)
8211
+ SENSITIVE = []
8212
+ include Aws::Structure
8213
+ end
8214
+
7233
8215
  # @!attribute [rw] workflow_id
7234
8216
  # The run's workflow ID. The `workflowId` is not the UUID.
7235
8217
  # @return [String]
@@ -7395,6 +8377,15 @@ module Aws::Omics
7395
8377
  # [1]: https://docs.aws.amazon.com/omics/latest/dev/workflow-versions.html
7396
8378
  # @return [String]
7397
8379
  #
8380
+ # @!attribute [rw] networking_mode
8381
+ # Optional configuration for run networking behavior. If not
8382
+ # specified, this will default to RESTRICTED.
8383
+ # @return [String]
8384
+ #
8385
+ # @!attribute [rw] configuration_name
8386
+ # Optional configuration name to use for the workflow run.
8387
+ # @return [String]
8388
+ #
7398
8389
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartRunRequest AWS API Documentation
7399
8390
  #
7400
8391
  class StartRunRequest < Struct.new(
@@ -7416,7 +8407,9 @@ module Aws::Omics
7416
8407
  :retention_mode,
7417
8408
  :storage_type,
7418
8409
  :workflow_owner_id,
7419
- :workflow_version_name)
8410
+ :workflow_version_name,
8411
+ :networking_mode,
8412
+ :configuration_name)
7420
8413
  SENSITIVE = []
7421
8414
  include Aws::Structure
7422
8415
  end
@@ -7445,6 +8438,14 @@ module Aws::Omics
7445
8438
  # The destination for workflow outputs.
7446
8439
  # @return [String]
7447
8440
  #
8441
+ # @!attribute [rw] configuration
8442
+ # Configuration details for the workflow run.
8443
+ # @return [Types::ConfigurationDetails]
8444
+ #
8445
+ # @!attribute [rw] networking_mode
8446
+ # Networking mode for the workflow run.
8447
+ # @return [String]
8448
+ #
7448
8449
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartRunResponse AWS API Documentation
7449
8450
  #
7450
8451
  class StartRunResponse < Struct.new(
@@ -7453,7 +8454,9 @@ module Aws::Omics
7453
8454
  :status,
7454
8455
  :tags,
7455
8456
  :uuid,
7456
- :run_output_uri)
8457
+ :run_output_uri,
8458
+ :configuration,
8459
+ :networking_mode)
7457
8460
  SENSITIVE = []
7458
8461
  include Aws::Structure
7459
8462
  end
@@ -7525,6 +8528,50 @@ module Aws::Omics
7525
8528
  class Unknown < StoreOptions; end
7526
8529
  end
7527
8530
 
8531
+ # A summary of the submissions in a batch.
8532
+ #
8533
+ # @!attribute [rw] successful_start_submission_count
8534
+ # The number of successful start submissions.
8535
+ # @return [Integer]
8536
+ #
8537
+ # @!attribute [rw] failed_start_submission_count
8538
+ # The number of failed start submissions.
8539
+ # @return [Integer]
8540
+ #
8541
+ # @!attribute [rw] pending_start_submission_count
8542
+ # The number of pending start submissions.
8543
+ # @return [Integer]
8544
+ #
8545
+ # @!attribute [rw] successful_cancel_submission_count
8546
+ # The number of successful cancel submissions.
8547
+ # @return [Integer]
8548
+ #
8549
+ # @!attribute [rw] failed_cancel_submission_count
8550
+ # The number of failed cancel submissions.
8551
+ # @return [Integer]
8552
+ #
8553
+ # @!attribute [rw] successful_delete_submission_count
8554
+ # The number of successful delete submissions.
8555
+ # @return [Integer]
8556
+ #
8557
+ # @!attribute [rw] failed_delete_submission_count
8558
+ # The number of failed delete submissions.
8559
+ # @return [Integer]
8560
+ #
8561
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/SubmissionSummary AWS API Documentation
8562
+ #
8563
+ class SubmissionSummary < Struct.new(
8564
+ :successful_start_submission_count,
8565
+ :failed_start_submission_count,
8566
+ :pending_start_submission_count,
8567
+ :successful_cancel_submission_count,
8568
+ :failed_cancel_submission_count,
8569
+ :successful_delete_submission_count,
8570
+ :failed_delete_submission_count)
8571
+ SENSITIVE = []
8572
+ include Aws::Structure
8573
+ end
8574
+
7528
8575
  # @!attribute [rw] resource_arn
7529
8576
  # The resource's ARN.
7530
8577
  # @return [String]
@@ -8472,6 +9519,49 @@ module Aws::Omics
8472
9519
  class Unknown < VersionOptions; end
8473
9520
  end
8474
9521
 
9522
+ # VPC configuration for workflow runs.
9523
+ #
9524
+ # @!attribute [rw] security_group_ids
9525
+ # List of security group IDs. Maximum of 5 security groups allowed.
9526
+ # @return [Array<String>]
9527
+ #
9528
+ # @!attribute [rw] subnet_ids
9529
+ # List of subnet IDs. Maximum of 16 subnets allowed.
9530
+ # @return [Array<String>]
9531
+ #
9532
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/VpcConfig AWS API Documentation
9533
+ #
9534
+ class VpcConfig < Struct.new(
9535
+ :security_group_ids,
9536
+ :subnet_ids)
9537
+ SENSITIVE = []
9538
+ include Aws::Structure
9539
+ end
9540
+
9541
+ # VPC configuration for workflow runs with computed VPC ID.
9542
+ #
9543
+ # @!attribute [rw] security_group_ids
9544
+ # List of security group IDs.
9545
+ # @return [Array<String>]
9546
+ #
9547
+ # @!attribute [rw] subnet_ids
9548
+ # List of subnet IDs.
9549
+ # @return [Array<String>]
9550
+ #
9551
+ # @!attribute [rw] vpc_id
9552
+ # VPC ID computed from the provided subnet IDs.
9553
+ # @return [String]
9554
+ #
9555
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/VpcConfigResponse AWS API Documentation
9556
+ #
9557
+ class VpcConfigResponse < Struct.new(
9558
+ :security_group_ids,
9559
+ :subnet_ids,
9560
+ :vpc_id)
9561
+ SENSITIVE = []
9562
+ include Aws::Structure
9563
+ end
9564
+
8475
9565
  # A workflow.
8476
9566
  #
8477
9567
  # @!attribute [rw] arn