aws-sdk-omics 1.39.0 → 1.41.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/CHANGELOG.md +10 -0
- data/VERSION +1 -1
- data/lib/aws-sdk-omics/client.rb +566 -6
- data/lib/aws-sdk-omics/client_api.rb +352 -1
- data/lib/aws-sdk-omics/types.rb +694 -8
- data/lib/aws-sdk-omics.rb +1 -1
- data/sig/client.rbs +155 -2
- data/sig/types.rbs +168 -0
- metadata +2 -2
data/lib/aws-sdk-omics/types.rb
CHANGED
@@ -893,6 +893,106 @@ module Aws::Omics
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include Aws::Structure
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end
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# @!attribute [rw] cache_behavior
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# Default cache behavior for runs that use this cache. Supported
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# values are:
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#
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# `CACHE_ON_FAILURE`: Caches task outputs from completed tasks for
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# runs that fail. This setting is useful if you're debugging a
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# workflow that fails after several tasks completed successfully. The
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# subsequent run uses the cache outputs for previously-completed tasks
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# if the task definition, inputs, and container in ECR are identical
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# to the prior run.
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#
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# `CACHE_ALWAYS`: Caches task outputs from completed tasks for all
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# runs. This setting is useful in development mode, but do not use it
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# in a production setting.
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#
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# If you don't specify a value, the default behavior is
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# CACHE\_ON\_FAILURE. When you start a run that uses this cache, you
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# can override the default cache behavior.
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#
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# For more information, see [Run cache behavior][1] in the AWS
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# HealthOmics User Guide.
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#
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#
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#
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# [1]: https://docs.aws.amazon.com/omics/latest/dev/how-run-cache.html#run-cache-behavior
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# @return [String]
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#
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# @!attribute [rw] cache_s3_location
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# Specify the S3 location for storing the cached task outputs. This
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# data must be immediately accessible (not in an archived state).
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# @return [String]
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#
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# @!attribute [rw] description
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# Enter a description of the run cache.
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# @return [String]
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#
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# @!attribute [rw] name
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# Enter a user-friendly name for the run cache.
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# @return [String]
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#
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# @!attribute [rw] request_id
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# A unique request token, to ensure idempotency. If you don't specify
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# a token, HealthOmics automatically generates a universally unique
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# identifier (UUID) for the request.
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#
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# **A suitable default value is auto-generated.** You should normally
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# not need to pass this option.
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# @return [String]
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#
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# @!attribute [rw] tags
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# Specify one or more tags to associate with this run cache.
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# @return [Hash<String,String>]
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#
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# @!attribute [rw] cache_bucket_owner_id
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# The AWS account ID of the expected owner of the S3 bucket for the
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# run cache. If not provided, your account ID is set as the owner of
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# the bucket.
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# @return [String]
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateRunCacheRequest AWS API Documentation
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#
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class CreateRunCacheRequest < Struct.new(
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:cache_behavior,
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:cache_s3_location,
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:description,
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:name,
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:request_id,
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:tags,
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:cache_bucket_owner_id)
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SENSITIVE = []
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include Aws::Structure
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end
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# @!attribute [rw] arn
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# Unique resource identifier for the run cache.
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# @return [String]
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#
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# @!attribute [rw] id
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# Identifier for the run cache.
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# @return [String]
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#
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# @!attribute [rw] status
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# Run cache status.
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# @return [String]
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#
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# @!attribute [rw] tags
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# The tags associated with this run cache.
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# @return [Hash<String,String>]
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateRunCacheResponse AWS API Documentation
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#
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class CreateRunCacheResponse < Struct.new(
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:arn,
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:id,
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:status,
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:tags)
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SENSITIVE = []
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include Aws::Structure
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end
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# @!attribute [rw] name
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# A name for the group.
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# @return [String]
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@@ -983,6 +1083,9 @@ module Aws::Omics
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# @!attribute [rw] client_token
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# To ensure that requests don't run multiple times, specify a unique
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# token for each request.
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#
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# **A suitable default value is auto-generated.** You should normally
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# not need to pass this option.
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# @return [String]
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#
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# @!attribute [rw] fallback_location
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@@ -994,6 +1097,15 @@ module Aws::Omics
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# The ETag algorithm family to use for ingested read sets.
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# @return [String]
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#
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# @!attribute [rw] propagated_set_level_tags
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# The tags keys to propagate to the S3 objects associated with read
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# sets in the sequence store.
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# @return [Array<String>]
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#
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# @!attribute [rw] s3_access_config
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# S3 access configuration parameters
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# @return [Types::S3AccessConfig]
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateSequenceStoreRequest AWS API Documentation
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#
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class CreateSequenceStoreRequest < Struct.new(
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@@ -1003,7 +1115,9 @@ module Aws::Omics
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:tags,
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:client_token,
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:fallback_location,
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-
:e_tag_algorithm_family
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:e_tag_algorithm_family,
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:propagated_set_level_tags,
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:s3_access_config)
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SENSITIVE = []
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include Aws::Structure
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end
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@@ -1041,6 +1155,23 @@ module Aws::Omics
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# The algorithm family of the ETag.
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# @return [String]
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#
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# @!attribute [rw] status
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# The status of the sequence store.
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# @return [String]
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#
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# @!attribute [rw] status_message
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# The status message of the sequence store.
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# @return [String]
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#
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# @!attribute [rw] propagated_set_level_tags
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# The tags keys to propagate to the S3 objects associated with read
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# sets in the sequence store.
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# @return [Array<String>]
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#
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# @!attribute [rw] s3_access
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# The S3 access metadata of the sequence store.
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# @return [Types::SequenceStoreS3Access]
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateSequenceStoreResponse AWS API Documentation
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#
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class CreateSequenceStoreResponse < Struct.new(
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@@ -1051,7 +1182,11 @@ module Aws::Omics
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:sse_config,
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:creation_time,
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:fallback_location,
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-
:e_tag_algorithm_family
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:e_tag_algorithm_family,
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:status,
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:status_message,
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:propagated_set_level_tags,
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:s3_access)
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SENSITIVE = []
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include Aws::Structure
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end
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@@ -1361,6 +1496,18 @@ module Aws::Omics
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#
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class DeleteReferenceStoreResponse < Aws::EmptyStructure; end
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# @!attribute [rw] id
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# Run cache identifier for the cache you want to delete.
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# @return [String]
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteRunCacheRequest AWS API Documentation
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#
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class DeleteRunCacheRequest < Struct.new(
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:id)
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SENSITIVE = []
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include Aws::Structure
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end
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# @!attribute [rw] id
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# The run group's ID.
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# @return [String]
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@@ -1385,6 +1532,22 @@ module Aws::Omics
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include Aws::Structure
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end
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# @!attribute [rw] s3_access_point_arn
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# The S3 access point ARN that has the access policy.
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# @return [String]
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteS3AccessPolicyRequest AWS API Documentation
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#
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class DeleteS3AccessPolicyRequest < Struct.new(
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:s3_access_point_arn)
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SENSITIVE = []
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include Aws::Structure
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end
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteS3AccessPolicyResponse AWS API Documentation
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#
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class DeleteS3AccessPolicyResponse < Aws::EmptyStructure; end
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# @!attribute [rw] id
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# The sequence store's ID.
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# @return [String]
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@@ -2527,6 +2690,75 @@ module Aws::Omics
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include Aws::Structure
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end
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# @!attribute [rw] id
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# The identifier of the run cache to retrieve.
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# @return [String]
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetRunCacheRequest AWS API Documentation
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#
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class GetRunCacheRequest < Struct.new(
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:id)
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SENSITIVE = []
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include Aws::Structure
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end
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+
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# @!attribute [rw] arn
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# Unique resource identifier for the run cache.
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# @return [String]
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#
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# @!attribute [rw] cache_behavior
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# The default cache behavior for runs using this cache.
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# @return [String]
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#
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# @!attribute [rw] cache_bucket_owner_id
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# The identifier of the bucket owner.
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# @return [String]
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#
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# @!attribute [rw] cache_s3_uri
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# The S3 URI where the cache data is stored.
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# @return [String]
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#
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# @!attribute [rw] creation_time
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# Creation time of the run cache (an ISO 8601 formatted string).
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# @return [Time]
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#
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# @!attribute [rw] description
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# The run cache description.
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# @return [String]
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#
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# @!attribute [rw] id
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# The run cache ID.
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# @return [String]
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#
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# @!attribute [rw] name
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# The run cache name.
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# @return [String]
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#
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# @!attribute [rw] status
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# The run cache status.
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# @return [String]
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#
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# @!attribute [rw] tags
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# The tags associated with the run cache.
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# @return [Hash<String,String>]
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetRunCacheResponse AWS API Documentation
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#
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class GetRunCacheResponse < Struct.new(
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:arn,
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:cache_behavior,
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:cache_bucket_owner_id,
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:cache_s3_uri,
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:creation_time,
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:description,
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:id,
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:name,
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:status,
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:tags)
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SENSITIVE = []
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include Aws::Structure
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end
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+
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# @!attribute [rw] id
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# The group's ID.
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# @return [String]
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@@ -2616,6 +2848,18 @@ module Aws::Omics
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# The run's ID.
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# @return [String]
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#
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# @!attribute [rw] cache_id
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# The run cache associated with the run.
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# @return [String]
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#
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# @!attribute [rw] cache_behavior
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# The run cache behavior for the run.
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# @return [String]
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#
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+
# @!attribute [rw] engine_version
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# The workflow engine version.
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# @return [String]
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#
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# @!attribute [rw] status
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# The run's status.
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# @return [String]
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@@ -2739,6 +2983,9 @@ module Aws::Omics
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class GetRunResponse < Struct.new(
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:arn,
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:id,
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:cache_id,
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+
:cache_behavior,
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:engine_version,
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:status,
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:workflow_id,
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:workflow_type,
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@@ -2805,6 +3052,15 @@ module Aws::Omics
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# The task's CPU usage.
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# @return [Integer]
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#
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+
# @!attribute [rw] cache_hit
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# Set to true if AWS HealthOmics found a matching entry in the run
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# cache for this task.
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# @return [Boolean]
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#
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# @!attribute [rw] cache_s3_uri
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# The S3 URI of the cache location.
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# @return [String]
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#
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# @!attribute [rw] memory
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# The task's memory use in gigabytes.
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# @return [Integer]
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@@ -2848,6 +3104,8 @@ module Aws::Omics
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:status,
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:name,
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:cpus,
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:cache_hit,
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:cache_s3_uri,
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:memory,
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:creation_time,
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:start_time,
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@@ -2861,6 +3119,50 @@ module Aws::Omics
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include Aws::Structure
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end
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+
# @!attribute [rw] s3_access_point_arn
|
3123
|
+
# The S3 access point ARN that has the access policy.
|
3124
|
+
# @return [String]
|
3125
|
+
#
|
3126
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetS3AccessPolicyRequest AWS API Documentation
|
3127
|
+
#
|
3128
|
+
class GetS3AccessPolicyRequest < Struct.new(
|
3129
|
+
:s3_access_point_arn)
|
3130
|
+
SENSITIVE = []
|
3131
|
+
include Aws::Structure
|
3132
|
+
end
|
3133
|
+
|
3134
|
+
# @!attribute [rw] s3_access_point_arn
|
3135
|
+
# The S3 access point ARN that has the access policy.
|
3136
|
+
# @return [String]
|
3137
|
+
#
|
3138
|
+
# @!attribute [rw] store_id
|
3139
|
+
# The AWS-generated Sequence Store or Reference Store ID.
|
3140
|
+
# @return [String]
|
3141
|
+
#
|
3142
|
+
# @!attribute [rw] store_type
|
3143
|
+
# The type of store associated with the access point.
|
3144
|
+
# @return [String]
|
3145
|
+
#
|
3146
|
+
# @!attribute [rw] update_time
|
3147
|
+
# The time when the policy was last updated.
|
3148
|
+
# @return [Time]
|
3149
|
+
#
|
3150
|
+
# @!attribute [rw] s3_access_policy
|
3151
|
+
# The current resource policy that controls S3 access on the store.
|
3152
|
+
# @return [String]
|
3153
|
+
#
|
3154
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetS3AccessPolicyResponse AWS API Documentation
|
3155
|
+
#
|
3156
|
+
class GetS3AccessPolicyResponse < Struct.new(
|
3157
|
+
:s3_access_point_arn,
|
3158
|
+
:store_id,
|
3159
|
+
:store_type,
|
3160
|
+
:update_time,
|
3161
|
+
:s3_access_policy)
|
3162
|
+
SENSITIVE = []
|
3163
|
+
include Aws::Structure
|
3164
|
+
end
|
3165
|
+
|
2864
3166
|
# @!attribute [rw] id
|
2865
3167
|
# The store's ID.
|
2866
3168
|
# @return [String]
|
@@ -2911,6 +3213,23 @@ module Aws::Omics
|
|
2911
3213
|
# The algorithm family of the ETag.
|
2912
3214
|
# @return [String]
|
2913
3215
|
#
|
3216
|
+
# @!attribute [rw] status
|
3217
|
+
# The status of the sequence store.
|
3218
|
+
# @return [String]
|
3219
|
+
#
|
3220
|
+
# @!attribute [rw] status_message
|
3221
|
+
# The status message of the sequence store.
|
3222
|
+
# @return [String]
|
3223
|
+
#
|
3224
|
+
# @!attribute [rw] propagated_set_level_tags
|
3225
|
+
# The tags keys to propagate to the S3 objects associated with read
|
3226
|
+
# sets in the sequence store.
|
3227
|
+
# @return [Array<String>]
|
3228
|
+
#
|
3229
|
+
# @!attribute [rw] update_time
|
3230
|
+
# The last-updated time of the sequence store.
|
3231
|
+
# @return [Time]
|
3232
|
+
#
|
2914
3233
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetSequenceStoreResponse AWS API Documentation
|
2915
3234
|
#
|
2916
3235
|
class GetSequenceStoreResponse < Struct.new(
|
@@ -2922,7 +3241,11 @@ module Aws::Omics
|
|
2922
3241
|
:creation_time,
|
2923
3242
|
:fallback_location,
|
2924
3243
|
:s3_access,
|
2925
|
-
:e_tag_algorithm_family
|
3244
|
+
:e_tag_algorithm_family,
|
3245
|
+
:status,
|
3246
|
+
:status_message,
|
3247
|
+
:propagated_set_level_tags,
|
3248
|
+
:update_time)
|
2926
3249
|
SENSITIVE = []
|
2927
3250
|
include Aws::Structure
|
2928
3251
|
end
|
@@ -4074,6 +4397,43 @@ module Aws::Omics
|
|
4074
4397
|
include Aws::Structure
|
4075
4398
|
end
|
4076
4399
|
|
4400
|
+
# @!attribute [rw] max_results
|
4401
|
+
# The maximum number of results to return.
|
4402
|
+
# @return [Integer]
|
4403
|
+
#
|
4404
|
+
# @!attribute [rw] starting_token
|
4405
|
+
# Optional pagination token returned from a prior call to the
|
4406
|
+
# `ListRunCaches` API operation.
|
4407
|
+
# @return [String]
|
4408
|
+
#
|
4409
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunCachesRequest AWS API Documentation
|
4410
|
+
#
|
4411
|
+
class ListRunCachesRequest < Struct.new(
|
4412
|
+
:max_results,
|
4413
|
+
:starting_token)
|
4414
|
+
SENSITIVE = []
|
4415
|
+
include Aws::Structure
|
4416
|
+
end
|
4417
|
+
|
4418
|
+
# @!attribute [rw] items
|
4419
|
+
# Details about each run cache in the response.
|
4420
|
+
# @return [Array<Types::RunCacheListItem>]
|
4421
|
+
#
|
4422
|
+
# @!attribute [rw] next_token
|
4423
|
+
# Pagination token to retrieve additional run caches. If the response
|
4424
|
+
# does not have a `nextToken`value, you have reached to the end of the
|
4425
|
+
# list.
|
4426
|
+
# @return [String]
|
4427
|
+
#
|
4428
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunCachesResponse AWS API Documentation
|
4429
|
+
#
|
4430
|
+
class ListRunCachesResponse < Struct.new(
|
4431
|
+
:items,
|
4432
|
+
:next_token)
|
4433
|
+
SENSITIVE = []
|
4434
|
+
include Aws::Structure
|
4435
|
+
end
|
4436
|
+
|
4077
4437
|
# @!attribute [rw] name
|
4078
4438
|
# The run groups' name.
|
4079
4439
|
# @return [String]
|
@@ -4568,6 +4928,45 @@ module Aws::Omics
|
|
4568
4928
|
include Aws::Structure
|
4569
4929
|
end
|
4570
4930
|
|
4931
|
+
# @!attribute [rw] s3_access_point_arn
|
4932
|
+
# The S3 access point ARN where you want to put the access policy.
|
4933
|
+
# @return [String]
|
4934
|
+
#
|
4935
|
+
# @!attribute [rw] s3_access_policy
|
4936
|
+
# The resource policy that controls S3 access to the store.
|
4937
|
+
# @return [String]
|
4938
|
+
#
|
4939
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/PutS3AccessPolicyRequest AWS API Documentation
|
4940
|
+
#
|
4941
|
+
class PutS3AccessPolicyRequest < Struct.new(
|
4942
|
+
:s3_access_point_arn,
|
4943
|
+
:s3_access_policy)
|
4944
|
+
SENSITIVE = []
|
4945
|
+
include Aws::Structure
|
4946
|
+
end
|
4947
|
+
|
4948
|
+
# @!attribute [rw] s3_access_point_arn
|
4949
|
+
# The S3 access point ARN that now has the access policy.
|
4950
|
+
# @return [String]
|
4951
|
+
#
|
4952
|
+
# @!attribute [rw] store_id
|
4953
|
+
# The AWS-generated Sequence Store or Reference Store ID.
|
4954
|
+
# @return [String]
|
4955
|
+
#
|
4956
|
+
# @!attribute [rw] store_type
|
4957
|
+
# The type of store associated with the access point.
|
4958
|
+
# @return [String]
|
4959
|
+
#
|
4960
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/PutS3AccessPolicyResponse AWS API Documentation
|
4961
|
+
#
|
4962
|
+
class PutS3AccessPolicyResponse < Struct.new(
|
4963
|
+
:s3_access_point_arn,
|
4964
|
+
:store_id,
|
4965
|
+
:store_type)
|
4966
|
+
SENSITIVE = []
|
4967
|
+
include Aws::Structure
|
4968
|
+
end
|
4969
|
+
|
4571
4970
|
# The ranges specified in the request are not valid.
|
4572
4971
|
#
|
4573
4972
|
# @!attribute [rw] message
|
@@ -5113,6 +5512,51 @@ module Aws::Omics
|
|
5113
5512
|
include Aws::Structure
|
5114
5513
|
end
|
5115
5514
|
|
5515
|
+
# List entry for one run cache.
|
5516
|
+
#
|
5517
|
+
# @!attribute [rw] arn
|
5518
|
+
# Unique resource identifier for the run cache.
|
5519
|
+
# @return [String]
|
5520
|
+
#
|
5521
|
+
# @!attribute [rw] cache_behavior
|
5522
|
+
# Default cache behavior for the run cache.
|
5523
|
+
# @return [String]
|
5524
|
+
#
|
5525
|
+
# @!attribute [rw] cache_s3_uri
|
5526
|
+
# The S3 uri for the run cache data.
|
5527
|
+
# @return [String]
|
5528
|
+
#
|
5529
|
+
# @!attribute [rw] creation_time
|
5530
|
+
# The time that this run cache was created (an ISO 8601 formatted
|
5531
|
+
# string).
|
5532
|
+
# @return [Time]
|
5533
|
+
#
|
5534
|
+
# @!attribute [rw] id
|
5535
|
+
# The identifier for this run cache.
|
5536
|
+
# @return [String]
|
5537
|
+
#
|
5538
|
+
# @!attribute [rw] name
|
5539
|
+
# The name of the run cache.
|
5540
|
+
# @return [String]
|
5541
|
+
#
|
5542
|
+
# @!attribute [rw] status
|
5543
|
+
# The run cache status.
|
5544
|
+
# @return [String]
|
5545
|
+
#
|
5546
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/RunCacheListItem AWS API Documentation
|
5547
|
+
#
|
5548
|
+
class RunCacheListItem < Struct.new(
|
5549
|
+
:arn,
|
5550
|
+
:cache_behavior,
|
5551
|
+
:cache_s3_uri,
|
5552
|
+
:creation_time,
|
5553
|
+
:id,
|
5554
|
+
:name,
|
5555
|
+
:status)
|
5556
|
+
SENSITIVE = []
|
5557
|
+
include Aws::Structure
|
5558
|
+
end
|
5559
|
+
|
5116
5560
|
# A run group.
|
5117
5561
|
#
|
5118
5562
|
# @!attribute [rw] arn
|
@@ -5247,6 +5691,20 @@ module Aws::Omics
|
|
5247
5691
|
include Aws::Structure
|
5248
5692
|
end
|
5249
5693
|
|
5694
|
+
# S3 access configuration parameters.
|
5695
|
+
#
|
5696
|
+
# @!attribute [rw] access_log_location
|
5697
|
+
# Location of the access logs.
|
5698
|
+
# @return [String]
|
5699
|
+
#
|
5700
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/S3AccessConfig AWS API Documentation
|
5701
|
+
#
|
5702
|
+
class S3AccessConfig < Struct.new(
|
5703
|
+
:access_log_location)
|
5704
|
+
SENSITIVE = []
|
5705
|
+
include Aws::Structure
|
5706
|
+
end
|
5707
|
+
|
5250
5708
|
# Details about a sequence.
|
5251
5709
|
#
|
5252
5710
|
# @!attribute [rw] total_read_count
|
@@ -5311,6 +5769,18 @@ module Aws::Omics
|
|
5311
5769
|
# The algorithm family of the ETag.
|
5312
5770
|
# @return [String]
|
5313
5771
|
#
|
5772
|
+
# @!attribute [rw] status
|
5773
|
+
# Status of the sequence store.
|
5774
|
+
# @return [String]
|
5775
|
+
#
|
5776
|
+
# @!attribute [rw] status_message
|
5777
|
+
# The status message of the sequence store.
|
5778
|
+
# @return [String]
|
5779
|
+
#
|
5780
|
+
# @!attribute [rw] update_time
|
5781
|
+
# The last-updated time of the Sequence Store.
|
5782
|
+
# @return [Time]
|
5783
|
+
#
|
5314
5784
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/SequenceStoreDetail AWS API Documentation
|
5315
5785
|
#
|
5316
5786
|
class SequenceStoreDetail < Struct.new(
|
@@ -5321,7 +5791,10 @@ module Aws::Omics
|
|
5321
5791
|
:sse_config,
|
5322
5792
|
:creation_time,
|
5323
5793
|
:fallback_location,
|
5324
|
-
:e_tag_algorithm_family
|
5794
|
+
:e_tag_algorithm_family,
|
5795
|
+
:status,
|
5796
|
+
:status_message,
|
5797
|
+
:update_time)
|
5325
5798
|
SENSITIVE = []
|
5326
5799
|
include Aws::Structure
|
5327
5800
|
end
|
@@ -5340,12 +5813,27 @@ module Aws::Omics
|
|
5340
5813
|
# The filter's end date.
|
5341
5814
|
# @return [Time]
|
5342
5815
|
#
|
5816
|
+
# @!attribute [rw] status
|
5817
|
+
# Filter results based on status.
|
5818
|
+
# @return [String]
|
5819
|
+
#
|
5820
|
+
# @!attribute [rw] updated_after
|
5821
|
+
# Filter results based on stores updated after the specified time.
|
5822
|
+
# @return [Time]
|
5823
|
+
#
|
5824
|
+
# @!attribute [rw] updated_before
|
5825
|
+
# Filter results based on stores updated before the specified time.
|
5826
|
+
# @return [Time]
|
5827
|
+
#
|
5343
5828
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/SequenceStoreFilter AWS API Documentation
|
5344
5829
|
#
|
5345
5830
|
class SequenceStoreFilter < Struct.new(
|
5346
5831
|
:name,
|
5347
5832
|
:created_after,
|
5348
|
-
:created_before
|
5833
|
+
:created_before,
|
5834
|
+
:status,
|
5835
|
+
:updated_after,
|
5836
|
+
:updated_before)
|
5349
5837
|
SENSITIVE = []
|
5350
5838
|
include Aws::Structure
|
5351
5839
|
end
|
@@ -5361,11 +5849,16 @@ module Aws::Omics
|
|
5361
5849
|
# storing read sets.
|
5362
5850
|
# @return [String]
|
5363
5851
|
#
|
5852
|
+
# @!attribute [rw] access_log_location
|
5853
|
+
# Location of the access logs.
|
5854
|
+
# @return [String]
|
5855
|
+
#
|
5364
5856
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/SequenceStoreS3Access AWS API Documentation
|
5365
5857
|
#
|
5366
5858
|
class SequenceStoreS3Access < Struct.new(
|
5367
5859
|
:s3_uri,
|
5368
|
-
:s3_access_point_arn
|
5860
|
+
:s3_access_point_arn,
|
5861
|
+
:access_log_location)
|
5369
5862
|
SENSITIVE = []
|
5370
5863
|
include Aws::Structure
|
5371
5864
|
end
|
@@ -5889,6 +6382,22 @@ module Aws::Omics
|
|
5889
6382
|
# A name for the run.
|
5890
6383
|
# @return [String]
|
5891
6384
|
#
|
6385
|
+
# @!attribute [rw] cache_id
|
6386
|
+
# Identifier of the cache associated with this run. If you don't
|
6387
|
+
# specify a cache ID, no task outputs are cached for this run.
|
6388
|
+
# @return [String]
|
6389
|
+
#
|
6390
|
+
# @!attribute [rw] cache_behavior
|
6391
|
+
# The cache behavior for the run. You specify this value if you want
|
6392
|
+
# to override the default behavior for the cache. You had set the
|
6393
|
+
# default value when you created the cache. For more information, see
|
6394
|
+
# [Run cache behavior][1] in the AWS HealthOmics User Guide.
|
6395
|
+
#
|
6396
|
+
#
|
6397
|
+
#
|
6398
|
+
# [1]: https://docs.aws.amazon.com/omics/latest/dev/how-run-cache.html#run-cache-behavior
|
6399
|
+
# @return [String]
|
6400
|
+
#
|
5892
6401
|
# @!attribute [rw] run_group_id
|
5893
6402
|
# The run's group ID.
|
5894
6403
|
# @return [String]
|
@@ -5928,7 +6437,22 @@ module Aws::Omics
|
|
5928
6437
|
# @return [String]
|
5929
6438
|
#
|
5930
6439
|
# @!attribute [rw] retention_mode
|
5931
|
-
# The retention mode for the run.
|
6440
|
+
# The retention mode for the run. The default value is RETAIN.
|
6441
|
+
#
|
6442
|
+
# HealthOmics stores a fixed number of runs that are available to the
|
6443
|
+
# console and API. In the default mode (RETAIN), you need to remove
|
6444
|
+
# runs manually when the number of run exceeds the maximum. If you set
|
6445
|
+
# the retention mode to `REMOVE`, HealthOmics automatically removes
|
6446
|
+
# runs (that have mode set to REMOVE) when the number of run exceeds
|
6447
|
+
# the maximum. All run logs are available in CloudWatch logs, if you
|
6448
|
+
# need information about a run that is no longer available to the API.
|
6449
|
+
#
|
6450
|
+
# For more information about retention mode, see [Specifying run
|
6451
|
+
# retention mode][1] in the *AWS HealthOmics User Guide*.
|
6452
|
+
#
|
6453
|
+
#
|
6454
|
+
#
|
6455
|
+
# [1]: https://docs.aws.amazon.com/omics/latest/dev/starting-a-run.html
|
5932
6456
|
# @return [String]
|
5933
6457
|
#
|
5934
6458
|
# @!attribute [rw] storage_type
|
@@ -5950,6 +6474,8 @@ module Aws::Omics
|
|
5950
6474
|
:run_id,
|
5951
6475
|
:role_arn,
|
5952
6476
|
:name,
|
6477
|
+
:cache_id,
|
6478
|
+
:cache_behavior,
|
5953
6479
|
:run_group_id,
|
5954
6480
|
:priority,
|
5955
6481
|
:parameters,
|
@@ -5966,7 +6492,7 @@ module Aws::Omics
|
|
5966
6492
|
end
|
5967
6493
|
|
5968
6494
|
# @!attribute [rw] arn
|
5969
|
-
#
|
6495
|
+
# Unique resource identifier for the run.
|
5970
6496
|
# @return [String]
|
5971
6497
|
#
|
5972
6498
|
# @!attribute [rw] id
|
@@ -6108,6 +6634,15 @@ module Aws::Omics
|
|
6108
6634
|
# The task's CPU count.
|
6109
6635
|
# @return [Integer]
|
6110
6636
|
#
|
6637
|
+
# @!attribute [rw] cache_hit
|
6638
|
+
# Set to true if AWS HealthOmics found a matching entry in the run
|
6639
|
+
# cache for this task.
|
6640
|
+
# @return [Boolean]
|
6641
|
+
#
|
6642
|
+
# @!attribute [rw] cache_s3_uri
|
6643
|
+
# The S3 URI of the cache location.
|
6644
|
+
# @return [String]
|
6645
|
+
#
|
6111
6646
|
# @!attribute [rw] memory
|
6112
6647
|
# The task's memory use in gigabyes.
|
6113
6648
|
# @return [Integer]
|
@@ -6140,6 +6675,8 @@ module Aws::Omics
|
|
6140
6675
|
:status,
|
6141
6676
|
:name,
|
6142
6677
|
:cpus,
|
6678
|
+
:cache_hit,
|
6679
|
+
:cache_s3_uri,
|
6143
6680
|
:memory,
|
6144
6681
|
:creation_time,
|
6145
6682
|
:start_time,
|
@@ -6384,6 +6921,33 @@ module Aws::Omics
|
|
6384
6921
|
include Aws::Structure
|
6385
6922
|
end
|
6386
6923
|
|
6924
|
+
# @!attribute [rw] cache_behavior
|
6925
|
+
# Update the default run cache behavior.
|
6926
|
+
# @return [String]
|
6927
|
+
#
|
6928
|
+
# @!attribute [rw] description
|
6929
|
+
# Update the run cache description.
|
6930
|
+
# @return [String]
|
6931
|
+
#
|
6932
|
+
# @!attribute [rw] id
|
6933
|
+
# The identifier of the run cache you want to update.
|
6934
|
+
# @return [String]
|
6935
|
+
#
|
6936
|
+
# @!attribute [rw] name
|
6937
|
+
# Update the name of the run cache.
|
6938
|
+
# @return [String]
|
6939
|
+
#
|
6940
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateRunCacheRequest AWS API Documentation
|
6941
|
+
#
|
6942
|
+
class UpdateRunCacheRequest < Struct.new(
|
6943
|
+
:cache_behavior,
|
6944
|
+
:description,
|
6945
|
+
:id,
|
6946
|
+
:name)
|
6947
|
+
SENSITIVE = []
|
6948
|
+
include Aws::Structure
|
6949
|
+
end
|
6950
|
+
|
6387
6951
|
# @!attribute [rw] id
|
6388
6952
|
# The group's ID.
|
6389
6953
|
# @return [String]
|
@@ -6421,6 +6985,128 @@ module Aws::Omics
|
|
6421
6985
|
include Aws::Structure
|
6422
6986
|
end
|
6423
6987
|
|
6988
|
+
# @!attribute [rw] id
|
6989
|
+
# The ID of the sequence store.
|
6990
|
+
# @return [String]
|
6991
|
+
#
|
6992
|
+
# @!attribute [rw] name
|
6993
|
+
# A name for the sequence store.
|
6994
|
+
# @return [String]
|
6995
|
+
#
|
6996
|
+
# @!attribute [rw] description
|
6997
|
+
# A description for the sequence store.
|
6998
|
+
# @return [String]
|
6999
|
+
#
|
7000
|
+
# @!attribute [rw] client_token
|
7001
|
+
# To ensure that requests don't run multiple times, specify a unique
|
7002
|
+
# token for each request.
|
7003
|
+
#
|
7004
|
+
# **A suitable default value is auto-generated.** You should normally
|
7005
|
+
# not need to pass this option.
|
7006
|
+
# @return [String]
|
7007
|
+
#
|
7008
|
+
# @!attribute [rw] fallback_location
|
7009
|
+
# The S3 URI of a bucket and folder to store Read Sets that fail to
|
7010
|
+
# upload.
|
7011
|
+
# @return [String]
|
7012
|
+
#
|
7013
|
+
# @!attribute [rw] propagated_set_level_tags
|
7014
|
+
# The tags keys to propagate to the S3 objects associated with read
|
7015
|
+
# sets in the sequence store.
|
7016
|
+
# @return [Array<String>]
|
7017
|
+
#
|
7018
|
+
# @!attribute [rw] s3_access_config
|
7019
|
+
# S3 access configuration parameters.
|
7020
|
+
# @return [Types::S3AccessConfig]
|
7021
|
+
#
|
7022
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateSequenceStoreRequest AWS API Documentation
|
7023
|
+
#
|
7024
|
+
class UpdateSequenceStoreRequest < Struct.new(
|
7025
|
+
:id,
|
7026
|
+
:name,
|
7027
|
+
:description,
|
7028
|
+
:client_token,
|
7029
|
+
:fallback_location,
|
7030
|
+
:propagated_set_level_tags,
|
7031
|
+
:s3_access_config)
|
7032
|
+
SENSITIVE = []
|
7033
|
+
include Aws::Structure
|
7034
|
+
end
|
7035
|
+
|
7036
|
+
# @!attribute [rw] id
|
7037
|
+
# The ID of the sequence store.
|
7038
|
+
# @return [String]
|
7039
|
+
#
|
7040
|
+
# @!attribute [rw] arn
|
7041
|
+
# The ARN of the sequence store.
|
7042
|
+
# @return [String]
|
7043
|
+
#
|
7044
|
+
# @!attribute [rw] name
|
7045
|
+
# The name of the sequence store.
|
7046
|
+
# @return [String]
|
7047
|
+
#
|
7048
|
+
# @!attribute [rw] description
|
7049
|
+
# Description of the sequence store.
|
7050
|
+
# @return [String]
|
7051
|
+
#
|
7052
|
+
# @!attribute [rw] sse_config
|
7053
|
+
# Server-side encryption (SSE) settings for a store.
|
7054
|
+
# @return [Types::SseConfig]
|
7055
|
+
#
|
7056
|
+
# @!attribute [rw] creation_time
|
7057
|
+
# The time when the store was created.
|
7058
|
+
# @return [Time]
|
7059
|
+
#
|
7060
|
+
# @!attribute [rw] update_time
|
7061
|
+
# The last-updated time of the Sequence Store.
|
7062
|
+
# @return [Time]
|
7063
|
+
#
|
7064
|
+
# @!attribute [rw] propagated_set_level_tags
|
7065
|
+
# The tags keys to propagate to the S3 objects associated with read
|
7066
|
+
# sets in the sequence store.
|
7067
|
+
# @return [Array<String>]
|
7068
|
+
#
|
7069
|
+
# @!attribute [rw] status
|
7070
|
+
# The status of the sequence store.
|
7071
|
+
# @return [String]
|
7072
|
+
#
|
7073
|
+
# @!attribute [rw] status_message
|
7074
|
+
# The status message of the sequence store.
|
7075
|
+
# @return [String]
|
7076
|
+
#
|
7077
|
+
# @!attribute [rw] fallback_location
|
7078
|
+
# The S3 URI of a bucket and folder to store Read Sets that fail to
|
7079
|
+
# upload.
|
7080
|
+
# @return [String]
|
7081
|
+
#
|
7082
|
+
# @!attribute [rw] s3_access
|
7083
|
+
# The S3 access metadata of the sequence store.
|
7084
|
+
# @return [Types::SequenceStoreS3Access]
|
7085
|
+
#
|
7086
|
+
# @!attribute [rw] e_tag_algorithm_family
|
7087
|
+
# The ETag algorithm family to use on ingested read sets.
|
7088
|
+
# @return [String]
|
7089
|
+
#
|
7090
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateSequenceStoreResponse AWS API Documentation
|
7091
|
+
#
|
7092
|
+
class UpdateSequenceStoreResponse < Struct.new(
|
7093
|
+
:id,
|
7094
|
+
:arn,
|
7095
|
+
:name,
|
7096
|
+
:description,
|
7097
|
+
:sse_config,
|
7098
|
+
:creation_time,
|
7099
|
+
:update_time,
|
7100
|
+
:propagated_set_level_tags,
|
7101
|
+
:status,
|
7102
|
+
:status_message,
|
7103
|
+
:fallback_location,
|
7104
|
+
:s3_access,
|
7105
|
+
:e_tag_algorithm_family)
|
7106
|
+
SENSITIVE = []
|
7107
|
+
include Aws::Structure
|
7108
|
+
end
|
7109
|
+
|
6424
7110
|
# @!attribute [rw] name
|
6425
7111
|
# A name for the store.
|
6426
7112
|
# @return [String]
|