aws-sdk-omics 1.3.0 → 1.5.0

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@@ -275,6 +275,11 @@ module Aws::Omics
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  # in the future.
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  #
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  #
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+ # @option options [String] :sdk_ua_app_id
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+ # A unique and opaque application ID that is appended to the
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+ # User-Agent header as app/<sdk_ua_app_id>. It should have a
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+ # maximum length of 50.
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+ #
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  # @option options [String] :secret_access_key
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  #
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  # @option options [String] :session_token
@@ -368,6 +373,32 @@ module Aws::Omics
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  # @!group API Operations
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+ # Stops a multipart upload.
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+ #
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+ # @option params [required, String] :sequence_store_id
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+ # The sequence store ID for the store involved in the multipart upload.
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+ #
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+ # @option params [required, String] :upload_id
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+ # The ID for the multipart upload.
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+ #
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+ # @return [Struct] Returns an empty {Seahorse::Client::Response response}.
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+ #
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+ # @example Request syntax with placeholder values
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+ #
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+ # resp = client.abort_multipart_read_set_upload({
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+ # sequence_store_id: "SequenceStoreId", # required
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+ # upload_id: "UploadId", # required
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+ # })
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+ #
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+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/AbortMultipartReadSetUpload AWS API Documentation
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+ #
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+ # @overload abort_multipart_read_set_upload(params = {})
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+ # @param [Hash] params ({})
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+ def abort_multipart_read_set_upload(params = {}, options = {})
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+ req = build_request(:abort_multipart_read_set_upload, params)
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+ req.send_request(options)
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+ end
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+
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  # Deletes one or more read sets.
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  #
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  # @option params [required, Array<String>] :ids
@@ -390,8 +421,8 @@ module Aws::Omics
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  # @example Response structure
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  #
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  # resp.errors #=> Array
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- # resp.errors[0].code #=> String
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  # resp.errors[0].id #=> String
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+ # resp.errors[0].code #=> String
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  # resp.errors[0].message #=> String
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  #
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  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/BatchDeleteReadSet AWS API Documentation
@@ -469,16 +500,62 @@ module Aws::Omics
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  req.send_request(options)
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  end
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+ # Concludes a multipart upload once you have uploaded all the
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+ # components.
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+ #
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+ # @option params [required, String] :sequence_store_id
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+ # The sequence store ID for the store involved in the multipart upload.
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+ #
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+ # @option params [required, String] :upload_id
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+ # The ID for the multipart upload.
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+ #
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+ # @option params [required, Array<Types::CompleteReadSetUploadPartListItem>] :parts
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+ # The individual uploads or parts of a multipart upload.
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+ #
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+ # @return [Types::CompleteMultipartReadSetUploadResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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+ #
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+ # * {Types::CompleteMultipartReadSetUploadResponse#read_set_id #read_set_id} => String
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+ #
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+ # @example Request syntax with placeholder values
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+ #
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+ # resp = client.complete_multipart_read_set_upload({
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+ # sequence_store_id: "SequenceStoreId", # required
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+ # upload_id: "UploadId", # required
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+ # parts: [ # required
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+ # {
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+ # part_number: 1, # required
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+ # part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2
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+ # checksum: "String", # required
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+ # },
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+ # ],
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+ # })
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+ #
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+ # @example Response structure
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+ #
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+ # resp.read_set_id #=> String
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+ #
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+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CompleteMultipartReadSetUpload AWS API Documentation
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+ #
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+ # @overload complete_multipart_read_set_upload(params = {})
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+ # @param [Hash] params ({})
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+ def complete_multipart_read_set_upload(params = {}, options = {})
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+ req = build_request(:complete_multipart_read_set_upload, params)
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+ req.send_request(options)
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+ end
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+
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  # Creates an annotation store.
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  #
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- # @option params [String] :description
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- # A description for the store.
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+ # @option params [Types::ReferenceItem] :reference
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+ # The genome reference for the store's annotations.
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  #
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  # @option params [String] :name
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  # A name for the store.
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  #
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- # @option params [Types::ReferenceItem] :reference
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- # The genome reference for the store's annotations.
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+ # @option params [String] :description
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+ # A description for the store.
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+ #
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+ # @option params [Hash<String,String>] :tags
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+ # Tags for the store.
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  #
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  # @option params [Types::SseConfig] :sse_config
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  # Server-side encryption (SSE) settings for the store.
@@ -489,30 +566,30 @@ module Aws::Omics
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  # @option params [Types::StoreOptions] :store_options
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  # File parsing options for the annotation store.
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  #
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- # @option params [Hash<String,String>] :tags
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- # Tags for the store.
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- #
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  # @return [Types::CreateAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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  #
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- # * {Types::CreateAnnotationStoreResponse#creation_time #creation_time} => Time
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  # * {Types::CreateAnnotationStoreResponse#id #id} => String
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- # * {Types::CreateAnnotationStoreResponse#name #name} => String
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  # * {Types::CreateAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
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- # * {Types::CreateAnnotationStoreResponse#status #status} => String
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  # * {Types::CreateAnnotationStoreResponse#store_format #store_format} => String
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  # * {Types::CreateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
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+ # * {Types::CreateAnnotationStoreResponse#status #status} => String
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+ # * {Types::CreateAnnotationStoreResponse#name #name} => String
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+ # * {Types::CreateAnnotationStoreResponse#creation_time #creation_time} => Time
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  #
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  # @example Request syntax with placeholder values
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  #
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  # resp = client.create_annotation_store({
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- # description: "StoreDescription",
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- # name: "CreateAnnotationStoreRequestNameString",
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  # reference: {
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  # reference_arn: "ReferenceArn",
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  # },
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+ # name: "CreateAnnotationStoreRequestNameString",
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+ # description: "StoreDescription",
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+ # tags: {
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+ # "TagKey" => "TagValue",
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+ # },
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  # sse_config: {
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- # key_arn: "SseConfigKeyArnString",
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  # type: "KMS", # required, accepts KMS
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+ # key_arn: "SseConfigKeyArnString",
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  # },
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  # store_format: "GFF", # required, accepts GFF, TSV, VCF
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  # store_options: {
@@ -528,18 +605,12 @@ module Aws::Omics
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  # ],
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  # },
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  # },
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- # tags: {
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- # "TagKey" => "TagValue",
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- # },
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  # })
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  #
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  # @example Response structure
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  #
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- # resp.creation_time #=> Time
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  # resp.id #=> String
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- # resp.name #=> String
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  # resp.reference.reference_arn #=> String
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- # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
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  # resp.store_format #=> String, one of "GFF", "TSV", "VCF"
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  # resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
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  # resp.store_options.tsv_store_options.format_to_header #=> Hash
@@ -547,6 +618,9 @@ module Aws::Omics
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  # resp.store_options.tsv_store_options.schema #=> Array
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619
  # resp.store_options.tsv_store_options.schema[0] #=> Hash
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  # resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
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+ # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
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+ # resp.name #=> String
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+ # resp.creation_time #=> Time
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  #
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  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateAnnotationStore AWS API Documentation
552
626
  #
@@ -557,57 +631,146 @@ module Aws::Omics
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631
  req.send_request(options)
558
632
  end
559
633
 
560
- # Creates a reference store.
634
+ # Begins a multipart read set upload.
635
+ #
636
+ # @option params [required, String] :sequence_store_id
637
+ # The sequence store ID for the store that is the destination of the
638
+ # multipart uploads.
561
639
  #
562
640
  # @option params [String] :client_token
563
- # To ensure that requests don't run multiple times, specify a unique
564
- # token for each request.
641
+ # An idempotency token that can be used to avoid triggering multiple
642
+ # multipart uploads.
643
+ #
644
+ # @option params [required, String] :source_file_type
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+ # The type of file being uploaded.
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+ #
647
+ # @option params [required, String] :subject_id
648
+ # The source's subject ID.
649
+ #
650
+ # @option params [required, String] :sample_id
651
+ # The source's sample ID.
652
+ #
653
+ # @option params [String] :generated_from
654
+ # Where the source originated.
655
+ #
656
+ # @option params [required, String] :reference_arn
657
+ # The ARN of the reference.
658
+ #
659
+ # @option params [required, String] :name
660
+ # The name of the read set.
565
661
  #
566
662
  # @option params [String] :description
567
- # A description for the store.
663
+ # The description of the read set.
664
+ #
665
+ # @option params [Hash<String,String>] :tags
666
+ # Any tags to add to the read set.
667
+ #
668
+ # @return [Types::CreateMultipartReadSetUploadResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
669
+ #
670
+ # * {Types::CreateMultipartReadSetUploadResponse#sequence_store_id #sequence_store_id} => String
671
+ # * {Types::CreateMultipartReadSetUploadResponse#upload_id #upload_id} => String
672
+ # * {Types::CreateMultipartReadSetUploadResponse#source_file_type #source_file_type} => String
673
+ # * {Types::CreateMultipartReadSetUploadResponse#subject_id #subject_id} => String
674
+ # * {Types::CreateMultipartReadSetUploadResponse#sample_id #sample_id} => String
675
+ # * {Types::CreateMultipartReadSetUploadResponse#generated_from #generated_from} => String
676
+ # * {Types::CreateMultipartReadSetUploadResponse#reference_arn #reference_arn} => String
677
+ # * {Types::CreateMultipartReadSetUploadResponse#name #name} => String
678
+ # * {Types::CreateMultipartReadSetUploadResponse#description #description} => String
679
+ # * {Types::CreateMultipartReadSetUploadResponse#tags #tags} => Hash&lt;String,String&gt;
680
+ # * {Types::CreateMultipartReadSetUploadResponse#creation_time #creation_time} => Time
681
+ #
682
+ # @example Request syntax with placeholder values
683
+ #
684
+ # resp = client.create_multipart_read_set_upload({
685
+ # sequence_store_id: "SequenceStoreId", # required
686
+ # client_token: "ClientToken",
687
+ # source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
688
+ # subject_id: "SubjectId", # required
689
+ # sample_id: "SampleId", # required
690
+ # generated_from: "GeneratedFrom",
691
+ # reference_arn: "ReferenceArn", # required
692
+ # name: "ReadSetName", # required
693
+ # description: "ReadSetDescription",
694
+ # tags: {
695
+ # "TagKey" => "TagValue",
696
+ # },
697
+ # })
698
+ #
699
+ # @example Response structure
700
+ #
701
+ # resp.sequence_store_id #=> String
702
+ # resp.upload_id #=> String
703
+ # resp.source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
704
+ # resp.subject_id #=> String
705
+ # resp.sample_id #=> String
706
+ # resp.generated_from #=> String
707
+ # resp.reference_arn #=> String
708
+ # resp.name #=> String
709
+ # resp.description #=> String
710
+ # resp.tags #=> Hash
711
+ # resp.tags["TagKey"] #=> String
712
+ # resp.creation_time #=> Time
713
+ #
714
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateMultipartReadSetUpload AWS API Documentation
715
+ #
716
+ # @overload create_multipart_read_set_upload(params = {})
717
+ # @param [Hash] params ({})
718
+ def create_multipart_read_set_upload(params = {}, options = {})
719
+ req = build_request(:create_multipart_read_set_upload, params)
720
+ req.send_request(options)
721
+ end
722
+
723
+ # Creates a reference store.
568
724
  #
569
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  # @option params [required, String] :name
570
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  # A name for the store.
571
727
  #
728
+ # @option params [String] :description
729
+ # A description for the store.
730
+ #
572
731
  # @option params [Types::SseConfig] :sse_config
573
732
  # Server-side encryption (SSE) settings for the store.
574
733
  #
575
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  # @option params [Hash<String,String>] :tags
576
735
  # Tags for the store.
577
736
  #
737
+ # @option params [String] :client_token
738
+ # To ensure that requests don't run multiple times, specify a unique
739
+ # token for each request.
740
+ #
578
741
  # @return [Types::CreateReferenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
579
742
  #
580
- # * {Types::CreateReferenceStoreResponse#arn #arn} => String
581
- # * {Types::CreateReferenceStoreResponse#creation_time #creation_time} => Time
582
- # * {Types::CreateReferenceStoreResponse#description #description} => String
583
743
  # * {Types::CreateReferenceStoreResponse#id #id} => String
744
+ # * {Types::CreateReferenceStoreResponse#arn #arn} => String
584
745
  # * {Types::CreateReferenceStoreResponse#name #name} => String
746
+ # * {Types::CreateReferenceStoreResponse#description #description} => String
585
747
  # * {Types::CreateReferenceStoreResponse#sse_config #sse_config} => Types::SseConfig
748
+ # * {Types::CreateReferenceStoreResponse#creation_time #creation_time} => Time
586
749
  #
587
750
  # @example Request syntax with placeholder values
588
751
  #
589
752
  # resp = client.create_reference_store({
590
- # client_token: "ClientToken",
591
- # description: "ReferenceStoreDescription",
592
753
  # name: "ReferenceStoreName", # required
754
+ # description: "ReferenceStoreDescription",
593
755
  # sse_config: {
594
- # key_arn: "SseConfigKeyArnString",
595
756
  # type: "KMS", # required, accepts KMS
757
+ # key_arn: "SseConfigKeyArnString",
596
758
  # },
597
759
  # tags: {
598
760
  # "TagKey" => "TagValue",
599
761
  # },
762
+ # client_token: "ClientToken",
600
763
  # })
601
764
  #
602
765
  # @example Response structure
603
766
  #
604
- # resp.arn #=> String
605
- # resp.creation_time #=> Time
606
- # resp.description #=> String
607
767
  # resp.id #=> String
768
+ # resp.arn #=> String
608
769
  # resp.name #=> String
609
- # resp.sse_config.key_arn #=> String
770
+ # resp.description #=> String
610
771
  # resp.sse_config.type #=> String, one of "KMS"
772
+ # resp.sse_config.key_arn #=> String
773
+ # resp.creation_time #=> Time
611
774
  #
612
775
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateReferenceStore AWS API Documentation
613
776
  #
@@ -620,17 +783,20 @@ module Aws::Omics
620
783
 
621
784
  # Creates a run group.
622
785
  #
786
+ # @option params [String] :name
787
+ # A name for the group.
788
+ #
623
789
  # @option params [Integer] :max_cpus
624
790
  # The maximum number of CPUs to use in the group.
625
791
  #
626
- # @option params [Integer] :max_duration
627
- # A maximum run time for the group in minutes.
628
- #
629
792
  # @option params [Integer] :max_runs
630
793
  # The maximum number of concurrent runs for the group.
631
794
  #
632
- # @option params [String] :name
633
- # A name for the group.
795
+ # @option params [Integer] :max_duration
796
+ # A maximum run time for the group in minutes.
797
+ #
798
+ # @option params [Hash<String,String>] :tags
799
+ # Tags for the group.
634
800
  #
635
801
  # @option params [required, String] :request_id
636
802
  # To ensure that requests don't run multiple times, specify a unique ID
@@ -639,8 +805,8 @@ module Aws::Omics
639
805
  # **A suitable default value is auto-generated.** You should normally
640
806
  # not need to pass this option.**
641
807
  #
642
- # @option params [Hash<String,String>] :tags
643
- # Tags for the group.
808
+ # @option params [Integer] :max_gpus
809
+ # The maximum GPUs that can be used by a run group.
644
810
  #
645
811
  # @return [Types::CreateRunGroupResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
646
812
  #
@@ -651,14 +817,15 @@ module Aws::Omics
651
817
  # @example Request syntax with placeholder values
652
818
  #
653
819
  # resp = client.create_run_group({
820
+ # name: "RunGroupName",
654
821
  # max_cpus: 1,
655
- # max_duration: 1,
656
822
  # max_runs: 1,
657
- # name: "RunGroupName",
658
- # request_id: "RunGroupRequestId", # required
823
+ # max_duration: 1,
659
824
  # tags: {
660
825
  # "TagKey" => "TagValue",
661
826
  # },
827
+ # request_id: "RunGroupRequestId", # required
828
+ # max_gpus: 1,
662
829
  # })
663
830
  #
664
831
  # @example Response structure
@@ -679,55 +846,62 @@ module Aws::Omics
679
846
 
680
847
  # Creates a sequence store.
681
848
  #
682
- # @option params [String] :client_token
683
- # To ensure that requests don't run multiple times, specify a unique
684
- # token for each request.
849
+ # @option params [required, String] :name
850
+ # A name for the store.
685
851
  #
686
852
  # @option params [String] :description
687
853
  # A description for the store.
688
854
  #
689
- # @option params [required, String] :name
690
- # A name for the store.
691
- #
692
855
  # @option params [Types::SseConfig] :sse_config
693
856
  # Server-side encryption (SSE) settings for the store.
694
857
  #
695
858
  # @option params [Hash<String,String>] :tags
696
859
  # Tags for the store.
697
860
  #
861
+ # @option params [String] :client_token
862
+ # To ensure that requests don't run multiple times, specify a unique
863
+ # token for each request.
864
+ #
865
+ # @option params [String] :fallback_location
866
+ # An S3 location that is used to store files that have failed a direct
867
+ # upload.
868
+ #
698
869
  # @return [Types::CreateSequenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
699
870
  #
700
- # * {Types::CreateSequenceStoreResponse#arn #arn} => String
701
- # * {Types::CreateSequenceStoreResponse#creation_time #creation_time} => Time
702
- # * {Types::CreateSequenceStoreResponse#description #description} => String
703
871
  # * {Types::CreateSequenceStoreResponse#id #id} => String
872
+ # * {Types::CreateSequenceStoreResponse#arn #arn} => String
704
873
  # * {Types::CreateSequenceStoreResponse#name #name} => String
874
+ # * {Types::CreateSequenceStoreResponse#description #description} => String
705
875
  # * {Types::CreateSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig
876
+ # * {Types::CreateSequenceStoreResponse#creation_time #creation_time} => Time
877
+ # * {Types::CreateSequenceStoreResponse#fallback_location #fallback_location} => String
706
878
  #
707
879
  # @example Request syntax with placeholder values
708
880
  #
709
881
  # resp = client.create_sequence_store({
710
- # client_token: "ClientToken",
711
- # description: "SequenceStoreDescription",
712
882
  # name: "SequenceStoreName", # required
883
+ # description: "SequenceStoreDescription",
713
884
  # sse_config: {
714
- # key_arn: "SseConfigKeyArnString",
715
885
  # type: "KMS", # required, accepts KMS
886
+ # key_arn: "SseConfigKeyArnString",
716
887
  # },
717
888
  # tags: {
718
889
  # "TagKey" => "TagValue",
719
890
  # },
891
+ # client_token: "ClientToken",
892
+ # fallback_location: "S3Destination",
720
893
  # })
721
894
  #
722
895
  # @example Response structure
723
896
  #
724
- # resp.arn #=> String
725
- # resp.creation_time #=> Time
726
- # resp.description #=> String
727
897
  # resp.id #=> String
898
+ # resp.arn #=> String
728
899
  # resp.name #=> String
729
- # resp.sse_config.key_arn #=> String
900
+ # resp.description #=> String
730
901
  # resp.sse_config.type #=> String, one of "KMS"
902
+ # resp.sse_config.key_arn #=> String
903
+ # resp.creation_time #=> Time
904
+ # resp.fallback_location #=> String
731
905
  #
732
906
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateSequenceStore AWS API Documentation
733
907
  #
@@ -740,53 +914,53 @@ module Aws::Omics
740
914
 
741
915
  # Creates a variant store.
742
916
  #
743
- # @option params [String] :description
744
- # A description for the store.
917
+ # @option params [required, Types::ReferenceItem] :reference
918
+ # The genome reference for the store's variants.
745
919
  #
746
920
  # @option params [String] :name
747
921
  # A name for the store.
748
922
  #
749
- # @option params [required, Types::ReferenceItem] :reference
750
- # The genome reference for the store's variants.
751
- #
752
- # @option params [Types::SseConfig] :sse_config
753
- # Server-side encryption (SSE) settings for the store.
923
+ # @option params [String] :description
924
+ # A description for the store.
754
925
  #
755
926
  # @option params [Hash<String,String>] :tags
756
927
  # Tags for the store.
757
928
  #
929
+ # @option params [Types::SseConfig] :sse_config
930
+ # Server-side encryption (SSE) settings for the store.
931
+ #
758
932
  # @return [Types::CreateVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
759
933
  #
760
- # * {Types::CreateVariantStoreResponse#creation_time #creation_time} => Time
761
934
  # * {Types::CreateVariantStoreResponse#id #id} => String
762
- # * {Types::CreateVariantStoreResponse#name #name} => String
763
935
  # * {Types::CreateVariantStoreResponse#reference #reference} => Types::ReferenceItem
764
936
  # * {Types::CreateVariantStoreResponse#status #status} => String
937
+ # * {Types::CreateVariantStoreResponse#name #name} => String
938
+ # * {Types::CreateVariantStoreResponse#creation_time #creation_time} => Time
765
939
  #
766
940
  # @example Request syntax with placeholder values
767
941
  #
768
942
  # resp = client.create_variant_store({
769
- # description: "StoreDescription",
770
- # name: "CreateVariantStoreRequestNameString",
771
943
  # reference: { # required
772
944
  # reference_arn: "ReferenceArn",
773
945
  # },
774
- # sse_config: {
775
- # key_arn: "SseConfigKeyArnString",
776
- # type: "KMS", # required, accepts KMS
777
- # },
946
+ # name: "CreateVariantStoreRequestNameString",
947
+ # description: "StoreDescription",
778
948
  # tags: {
779
949
  # "TagKey" => "TagValue",
780
950
  # },
951
+ # sse_config: {
952
+ # type: "KMS", # required, accepts KMS
953
+ # key_arn: "SseConfigKeyArnString",
954
+ # },
781
955
  # })
782
956
  #
783
957
  # @example Response structure
784
958
  #
785
- # resp.creation_time #=> Time
786
959
  # resp.id #=> String
787
- # resp.name #=> String
788
960
  # resp.reference.reference_arn #=> String
789
961
  # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
962
+ # resp.name #=> String
963
+ # resp.creation_time #=> Time
790
964
  #
791
965
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateVariantStore AWS API Documentation
792
966
  #
@@ -799,11 +973,8 @@ module Aws::Omics
799
973
 
800
974
  # Creates a workflow.
801
975
  #
802
- # @option params [String] :definition_uri
803
- # The URI of a definition for the workflow.
804
- #
805
- # @option params [String, StringIO, File] :definition_zip
806
- # A ZIP archive for the workflow.
976
+ # @option params [String] :name
977
+ # A name for the workflow.
807
978
  #
808
979
  # @option params [String] :description
809
980
  # A description for the workflow.
@@ -811,28 +982,34 @@ module Aws::Omics
811
982
  # @option params [String] :engine
812
983
  # An engine for the workflow.
813
984
  #
985
+ # @option params [String, StringIO, File] :definition_zip
986
+ # A ZIP archive for the workflow.
987
+ #
988
+ # @option params [String] :definition_uri
989
+ # The URI of a definition for the workflow.
990
+ #
814
991
  # @option params [String] :main
815
992
  # The path of the main definition file for the workflow.
816
993
  #
817
- # @option params [String] :name
818
- # A name for the workflow.
819
- #
820
994
  # @option params [Hash<String,Types::WorkflowParameter>] :parameter_template
821
995
  # A parameter template for the workflow.
822
996
  #
823
- # @option params [required, String] :request_id
824
- # To ensure that requests don't run multiple times, specify a unique ID
825
- # for each request.
826
- #
827
- # **A suitable default value is auto-generated.** You should normally
828
- # not need to pass this option.**
829
- #
830
997
  # @option params [Integer] :storage_capacity
831
998
  # A storage capacity for the workflow in gigabytes.
832
999
  #
833
1000
  # @option params [Hash<String,String>] :tags
834
1001
  # Tags for the workflow.
835
1002
  #
1003
+ # @option params [required, String] :request_id
1004
+ # To ensure that requests don't run multiple times, specify a unique ID
1005
+ # for each request.
1006
+ #
1007
+ # **A suitable default value is auto-generated.** You should normally
1008
+ # not need to pass this option.**
1009
+ #
1010
+ # @option params [String] :accelerators
1011
+ # The computational accelerator specified to run the workflow.
1012
+ #
836
1013
  # @return [Types::CreateWorkflowResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
837
1014
  #
838
1015
  # * {Types::CreateWorkflowResponse#arn #arn} => String
@@ -843,30 +1020,31 @@ module Aws::Omics
843
1020
  # @example Request syntax with placeholder values
844
1021
  #
845
1022
  # resp = client.create_workflow({
846
- # definition_uri: "WorkflowDefinition",
847
- # definition_zip: "data",
1023
+ # name: "WorkflowName",
848
1024
  # description: "WorkflowDescription",
849
1025
  # engine: "WDL", # accepts WDL, NEXTFLOW
1026
+ # definition_zip: "data",
1027
+ # definition_uri: "WorkflowDefinition",
850
1028
  # main: "WorkflowMain",
851
- # name: "WorkflowName",
852
1029
  # parameter_template: {
853
1030
  # "WorkflowParameterName" => {
854
1031
  # description: "WorkflowParameterDescription",
855
1032
  # optional: false,
856
1033
  # },
857
1034
  # },
858
- # request_id: "WorkflowRequestId", # required
859
1035
  # storage_capacity: 1,
860
1036
  # tags: {
861
1037
  # "TagKey" => "TagValue",
862
1038
  # },
1039
+ # request_id: "WorkflowRequestId", # required
1040
+ # accelerators: "GPU", # accepts GPU
863
1041
  # })
864
1042
  #
865
1043
  # @example Response structure
866
1044
  #
867
1045
  # resp.arn #=> String
868
1046
  # resp.id #=> String
869
- # resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
1047
+ # resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
870
1048
  # resp.tags #=> Hash
871
1049
  # resp.tags["TagKey"] #=> String
872
1050
  #
@@ -881,12 +1059,12 @@ module Aws::Omics
881
1059
 
882
1060
  # Deletes an annotation store.
883
1061
  #
884
- # @option params [Boolean] :force
885
- # Whether to force deletion.
886
- #
887
1062
  # @option params [required, String] :name
888
1063
  # The store's name.
889
1064
  #
1065
+ # @option params [Boolean] :force
1066
+ # Whether to force deletion.
1067
+ #
890
1068
  # @return [Types::DeleteAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
891
1069
  #
892
1070
  # * {Types::DeleteAnnotationStoreResponse#status #status} => String
@@ -894,8 +1072,8 @@ module Aws::Omics
894
1072
  # @example Request syntax with placeholder values
895
1073
  #
896
1074
  # resp = client.delete_annotation_store({
897
- # force: false,
898
1075
  # name: "String", # required
1076
+ # force: false,
899
1077
  # })
900
1078
  #
901
1079
  # @example Response structure
@@ -1027,12 +1205,12 @@ module Aws::Omics
1027
1205
 
1028
1206
  # Deletes a variant store.
1029
1207
  #
1030
- # @option params [Boolean] :force
1031
- # Whether to force deletion.
1032
- #
1033
1208
  # @option params [required, String] :name
1034
1209
  # The store's name.
1035
1210
  #
1211
+ # @option params [Boolean] :force
1212
+ # Whether to force deletion.
1213
+ #
1036
1214
  # @return [Types::DeleteVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1037
1215
  #
1038
1216
  # * {Types::DeleteVariantStoreResponse#status #status} => String
@@ -1040,8 +1218,8 @@ module Aws::Omics
1040
1218
  # @example Request syntax with placeholder values
1041
1219
  #
1042
1220
  # resp = client.delete_variant_store({
1043
- # force: false,
1044
1221
  # name: "String", # required
1222
+ # force: false,
1045
1223
  # })
1046
1224
  #
1047
1225
  # @example Response structure
@@ -1086,17 +1264,18 @@ module Aws::Omics
1086
1264
  #
1087
1265
  # @return [Types::GetAnnotationImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1088
1266
  #
1089
- # * {Types::GetAnnotationImportResponse#completion_time #completion_time} => Time
1090
- # * {Types::GetAnnotationImportResponse#creation_time #creation_time} => Time
1091
- # * {Types::GetAnnotationImportResponse#destination_name #destination_name} => String
1092
- # * {Types::GetAnnotationImportResponse#format_options #format_options} => Types::FormatOptions
1093
1267
  # * {Types::GetAnnotationImportResponse#id #id} => String
1094
- # * {Types::GetAnnotationImportResponse#items #items} => Array&lt;Types::AnnotationImportItemDetail&gt;
1268
+ # * {Types::GetAnnotationImportResponse#destination_name #destination_name} => String
1095
1269
  # * {Types::GetAnnotationImportResponse#role_arn #role_arn} => String
1096
- # * {Types::GetAnnotationImportResponse#run_left_normalization #run_left_normalization} => Boolean
1097
1270
  # * {Types::GetAnnotationImportResponse#status #status} => String
1098
1271
  # * {Types::GetAnnotationImportResponse#status_message #status_message} => String
1272
+ # * {Types::GetAnnotationImportResponse#creation_time #creation_time} => Time
1099
1273
  # * {Types::GetAnnotationImportResponse#update_time #update_time} => Time
1274
+ # * {Types::GetAnnotationImportResponse#completion_time #completion_time} => Time
1275
+ # * {Types::GetAnnotationImportResponse#items #items} => Array&lt;Types::AnnotationImportItemDetail&gt;
1276
+ # * {Types::GetAnnotationImportResponse#run_left_normalization #run_left_normalization} => Boolean
1277
+ # * {Types::GetAnnotationImportResponse#format_options #format_options} => Types::FormatOptions
1278
+ # * {Types::GetAnnotationImportResponse#annotation_fields #annotation_fields} => Hash&lt;String,String&gt;
1100
1279
  #
1101
1280
  # @example Request syntax with placeholder values
1102
1281
  #
@@ -1106,29 +1285,31 @@ module Aws::Omics
1106
1285
  #
1107
1286
  # @example Response structure
1108
1287
  #
1109
- # resp.completion_time #=> Time
1110
- # resp.creation_time #=> Time
1288
+ # resp.id #=> String
1111
1289
  # resp.destination_name #=> String
1112
- # resp.format_options.tsv_options.read_options.comment #=> String
1290
+ # resp.role_arn #=> String
1291
+ # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
1292
+ # resp.status_message #=> String
1293
+ # resp.creation_time #=> Time
1294
+ # resp.update_time #=> Time
1295
+ # resp.completion_time #=> Time
1296
+ # resp.items #=> Array
1297
+ # resp.items[0].source #=> String
1298
+ # resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
1299
+ # resp.run_left_normalization #=> Boolean
1300
+ # resp.format_options.tsv_options.read_options.sep #=> String
1113
1301
  # resp.format_options.tsv_options.read_options.encoding #=> String
1302
+ # resp.format_options.tsv_options.read_options.quote #=> String
1303
+ # resp.format_options.tsv_options.read_options.quote_all #=> Boolean
1114
1304
  # resp.format_options.tsv_options.read_options.escape #=> String
1115
1305
  # resp.format_options.tsv_options.read_options.escape_quotes #=> Boolean
1306
+ # resp.format_options.tsv_options.read_options.comment #=> String
1116
1307
  # resp.format_options.tsv_options.read_options.header #=> Boolean
1117
1308
  # resp.format_options.tsv_options.read_options.line_sep #=> String
1118
- # resp.format_options.tsv_options.read_options.quote #=> String
1119
- # resp.format_options.tsv_options.read_options.quote_all #=> Boolean
1120
- # resp.format_options.tsv_options.read_options.sep #=> String
1121
- # resp.format_options.vcf_options.ignore_filter_field #=> Boolean
1122
1309
  # resp.format_options.vcf_options.ignore_qual_field #=> Boolean
1123
- # resp.id #=> String
1124
- # resp.items #=> Array
1125
- # resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
1126
- # resp.items[0].source #=> String
1127
- # resp.role_arn #=> String
1128
- # resp.run_left_normalization #=> Boolean
1129
- # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
1130
- # resp.status_message #=> String
1131
- # resp.update_time #=> Time
1310
+ # resp.format_options.vcf_options.ignore_filter_field #=> Boolean
1311
+ # resp.annotation_fields #=> Hash
1312
+ # resp.annotation_fields["AnnotationFieldMapKeyString"] #=> String
1132
1313
  #
1133
1314
  #
1134
1315
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1151,20 +1332,20 @@ module Aws::Omics
1151
1332
  #
1152
1333
  # @return [Types::GetAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1153
1334
  #
1154
- # * {Types::GetAnnotationStoreResponse#creation_time #creation_time} => Time
1155
- # * {Types::GetAnnotationStoreResponse#description #description} => String
1156
1335
  # * {Types::GetAnnotationStoreResponse#id #id} => String
1157
- # * {Types::GetAnnotationStoreResponse#name #name} => String
1158
1336
  # * {Types::GetAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
1159
- # * {Types::GetAnnotationStoreResponse#sse_config #sse_config} => Types::SseConfig
1160
1337
  # * {Types::GetAnnotationStoreResponse#status #status} => String
1161
- # * {Types::GetAnnotationStoreResponse#status_message #status_message} => String
1162
1338
  # * {Types::GetAnnotationStoreResponse#store_arn #store_arn} => String
1163
- # * {Types::GetAnnotationStoreResponse#store_format #store_format} => String
1339
+ # * {Types::GetAnnotationStoreResponse#name #name} => String
1340
+ # * {Types::GetAnnotationStoreResponse#description #description} => String
1341
+ # * {Types::GetAnnotationStoreResponse#sse_config #sse_config} => Types::SseConfig
1342
+ # * {Types::GetAnnotationStoreResponse#creation_time #creation_time} => Time
1343
+ # * {Types::GetAnnotationStoreResponse#update_time #update_time} => Time
1344
+ # * {Types::GetAnnotationStoreResponse#tags #tags} => Hash&lt;String,String&gt;
1164
1345
  # * {Types::GetAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
1346
+ # * {Types::GetAnnotationStoreResponse#store_format #store_format} => String
1347
+ # * {Types::GetAnnotationStoreResponse#status_message #status_message} => String
1165
1348
  # * {Types::GetAnnotationStoreResponse#store_size_bytes #store_size_bytes} => Integer
1166
- # * {Types::GetAnnotationStoreResponse#tags #tags} => Hash&lt;String,String&gt;
1167
- # * {Types::GetAnnotationStoreResponse#update_time #update_time} => Time
1168
1349
  #
1169
1350
  # @example Request syntax with placeholder values
1170
1351
  #
@@ -1174,27 +1355,27 @@ module Aws::Omics
1174
1355
  #
1175
1356
  # @example Response structure
1176
1357
  #
1177
- # resp.creation_time #=> Time
1178
- # resp.description #=> String
1179
1358
  # resp.id #=> String
1180
- # resp.name #=> String
1181
1359
  # resp.reference.reference_arn #=> String
1182
- # resp.sse_config.key_arn #=> String
1183
- # resp.sse_config.type #=> String, one of "KMS"
1184
1360
  # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
1185
- # resp.status_message #=> String
1186
1361
  # resp.store_arn #=> String
1187
- # resp.store_format #=> String, one of "GFF", "TSV", "VCF"
1362
+ # resp.name #=> String
1363
+ # resp.description #=> String
1364
+ # resp.sse_config.type #=> String, one of "KMS"
1365
+ # resp.sse_config.key_arn #=> String
1366
+ # resp.creation_time #=> Time
1367
+ # resp.update_time #=> Time
1368
+ # resp.tags #=> Hash
1369
+ # resp.tags["TagKey"] #=> String
1188
1370
  # resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
1189
1371
  # resp.store_options.tsv_store_options.format_to_header #=> Hash
1190
1372
  # resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
1191
1373
  # resp.store_options.tsv_store_options.schema #=> Array
1192
1374
  # resp.store_options.tsv_store_options.schema[0] #=> Hash
1193
1375
  # resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
1376
+ # resp.store_format #=> String, one of "GFF", "TSV", "VCF"
1377
+ # resp.status_message #=> String
1194
1378
  # resp.store_size_bytes #=> Integer
1195
- # resp.tags #=> Hash
1196
- # resp.tags["TagKey"] #=> String
1197
- # resp.update_time #=> Time
1198
1379
  #
1199
1380
  #
1200
1381
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1213,18 +1394,18 @@ module Aws::Omics
1213
1394
 
1214
1395
  # Gets a file from a read set.
1215
1396
  #
1216
- # @option params [String] :file
1217
- # The file to retrieve.
1218
- #
1219
1397
  # @option params [required, String] :id
1220
1398
  # The read set's ID.
1221
1399
  #
1222
- # @option params [required, Integer] :part_number
1223
- # The part number to retrieve.
1224
- #
1225
1400
  # @option params [required, String] :sequence_store_id
1226
1401
  # The read set's sequence store ID.
1227
1402
  #
1403
+ # @option params [String] :file
1404
+ # The file to retrieve.
1405
+ #
1406
+ # @option params [required, Integer] :part_number
1407
+ # The part number to retrieve.
1408
+ #
1228
1409
  # @return [Types::GetReadSetResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1229
1410
  #
1230
1411
  # * {Types::GetReadSetResponse#payload #payload} => IO
@@ -1232,10 +1413,10 @@ module Aws::Omics
1232
1413
  # @example Request syntax with placeholder values
1233
1414
  #
1234
1415
  # resp = client.get_read_set({
1235
- # file: "SOURCE1", # accepts SOURCE1, SOURCE2, INDEX
1236
1416
  # id: "ReadSetId", # required
1237
- # part_number: 1, # required
1238
1417
  # sequence_store_id: "SequenceStoreId", # required
1418
+ # file: "SOURCE1", # accepts SOURCE1, SOURCE2, INDEX
1419
+ # part_number: 1, # required
1239
1420
  # })
1240
1421
  #
1241
1422
  # @example Response structure
@@ -1261,13 +1442,13 @@ module Aws::Omics
1261
1442
  #
1262
1443
  # @return [Types::GetReadSetActivationJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1263
1444
  #
1264
- # * {Types::GetReadSetActivationJobResponse#completion_time #completion_time} => Time
1265
- # * {Types::GetReadSetActivationJobResponse#creation_time #creation_time} => Time
1266
1445
  # * {Types::GetReadSetActivationJobResponse#id #id} => String
1267
1446
  # * {Types::GetReadSetActivationJobResponse#sequence_store_id #sequence_store_id} => String
1268
- # * {Types::GetReadSetActivationJobResponse#sources #sources} => Array&lt;Types::ActivateReadSetSourceItem&gt;
1269
1447
  # * {Types::GetReadSetActivationJobResponse#status #status} => String
1270
1448
  # * {Types::GetReadSetActivationJobResponse#status_message #status_message} => String
1449
+ # * {Types::GetReadSetActivationJobResponse#creation_time #creation_time} => Time
1450
+ # * {Types::GetReadSetActivationJobResponse#completion_time #completion_time} => Time
1451
+ # * {Types::GetReadSetActivationJobResponse#sources #sources} => Array&lt;Types::ActivateReadSetSourceItem&gt;
1271
1452
  #
1272
1453
  # @example Request syntax with placeholder values
1273
1454
  #
@@ -1278,16 +1459,16 @@ module Aws::Omics
1278
1459
  #
1279
1460
  # @example Response structure
1280
1461
  #
1281
- # resp.completion_time #=> Time
1282
- # resp.creation_time #=> Time
1283
1462
  # resp.id #=> String
1284
1463
  # resp.sequence_store_id #=> String
1464
+ # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1465
+ # resp.status_message #=> String
1466
+ # resp.creation_time #=> Time
1467
+ # resp.completion_time #=> Time
1285
1468
  # resp.sources #=> Array
1286
1469
  # resp.sources[0].read_set_id #=> String
1287
1470
  # resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
1288
1471
  # resp.sources[0].status_message #=> String
1289
- # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1290
- # resp.status_message #=> String
1291
1472
  #
1292
1473
  #
1293
1474
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1305,43 +1486,43 @@ module Aws::Omics
1305
1486
 
1306
1487
  # Gets information about a read set export job.
1307
1488
  #
1308
- # @option params [required, String] :id
1309
- # The job's ID.
1310
- #
1311
1489
  # @option params [required, String] :sequence_store_id
1312
1490
  # The job's sequence store ID.
1313
1491
  #
1492
+ # @option params [required, String] :id
1493
+ # The job's ID.
1494
+ #
1314
1495
  # @return [Types::GetReadSetExportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1315
1496
  #
1316
- # * {Types::GetReadSetExportJobResponse#completion_time #completion_time} => Time
1317
- # * {Types::GetReadSetExportJobResponse#creation_time #creation_time} => Time
1318
- # * {Types::GetReadSetExportJobResponse#destination #destination} => String
1319
1497
  # * {Types::GetReadSetExportJobResponse#id #id} => String
1320
- # * {Types::GetReadSetExportJobResponse#read_sets #read_sets} => Array&lt;Types::ExportReadSetDetail&gt;
1321
1498
  # * {Types::GetReadSetExportJobResponse#sequence_store_id #sequence_store_id} => String
1499
+ # * {Types::GetReadSetExportJobResponse#destination #destination} => String
1322
1500
  # * {Types::GetReadSetExportJobResponse#status #status} => String
1323
1501
  # * {Types::GetReadSetExportJobResponse#status_message #status_message} => String
1502
+ # * {Types::GetReadSetExportJobResponse#creation_time #creation_time} => Time
1503
+ # * {Types::GetReadSetExportJobResponse#completion_time #completion_time} => Time
1504
+ # * {Types::GetReadSetExportJobResponse#read_sets #read_sets} => Array&lt;Types::ExportReadSetDetail&gt;
1324
1505
  #
1325
1506
  # @example Request syntax with placeholder values
1326
1507
  #
1327
1508
  # resp = client.get_read_set_export_job({
1328
- # id: "ExportJobId", # required
1329
1509
  # sequence_store_id: "SequenceStoreId", # required
1510
+ # id: "ExportJobId", # required
1330
1511
  # })
1331
1512
  #
1332
1513
  # @example Response structure
1333
1514
  #
1334
- # resp.completion_time #=> Time
1335
- # resp.creation_time #=> Time
1336
- # resp.destination #=> String
1337
1515
  # resp.id #=> String
1516
+ # resp.sequence_store_id #=> String
1517
+ # resp.destination #=> String
1518
+ # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1519
+ # resp.status_message #=> String
1520
+ # resp.creation_time #=> Time
1521
+ # resp.completion_time #=> Time
1338
1522
  # resp.read_sets #=> Array
1339
1523
  # resp.read_sets[0].id #=> String
1340
1524
  # resp.read_sets[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
1341
1525
  # resp.read_sets[0].status_message #=> String
1342
- # resp.sequence_store_id #=> String
1343
- # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1344
- # resp.status_message #=> String
1345
1526
  #
1346
1527
  #
1347
1528
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1367,14 +1548,14 @@ module Aws::Omics
1367
1548
  #
1368
1549
  # @return [Types::GetReadSetImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1369
1550
  #
1370
- # * {Types::GetReadSetImportJobResponse#completion_time #completion_time} => Time
1371
- # * {Types::GetReadSetImportJobResponse#creation_time #creation_time} => Time
1372
1551
  # * {Types::GetReadSetImportJobResponse#id #id} => String
1373
- # * {Types::GetReadSetImportJobResponse#role_arn #role_arn} => String
1374
1552
  # * {Types::GetReadSetImportJobResponse#sequence_store_id #sequence_store_id} => String
1375
- # * {Types::GetReadSetImportJobResponse#sources #sources} => Array&lt;Types::ImportReadSetSourceItem&gt;
1553
+ # * {Types::GetReadSetImportJobResponse#role_arn #role_arn} => String
1376
1554
  # * {Types::GetReadSetImportJobResponse#status #status} => String
1377
1555
  # * {Types::GetReadSetImportJobResponse#status_message #status_message} => String
1556
+ # * {Types::GetReadSetImportJobResponse#creation_time #creation_time} => Time
1557
+ # * {Types::GetReadSetImportJobResponse#completion_time #completion_time} => Time
1558
+ # * {Types::GetReadSetImportJobResponse#sources #sources} => Array&lt;Types::ImportReadSetSourceItem&gt;
1378
1559
  #
1379
1560
  # @example Request syntax with placeholder values
1380
1561
  #
@@ -1385,27 +1566,27 @@ module Aws::Omics
1385
1566
  #
1386
1567
  # @example Response structure
1387
1568
  #
1388
- # resp.completion_time #=> Time
1389
- # resp.creation_time #=> Time
1390
1569
  # resp.id #=> String
1391
- # resp.role_arn #=> String
1392
1570
  # resp.sequence_store_id #=> String
1571
+ # resp.role_arn #=> String
1572
+ # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1573
+ # resp.status_message #=> String
1574
+ # resp.creation_time #=> Time
1575
+ # resp.completion_time #=> Time
1393
1576
  # resp.sources #=> Array
1394
- # resp.sources[0].description #=> String
1395
- # resp.sources[0].generated_from #=> String
1396
- # resp.sources[0].name #=> String
1397
- # resp.sources[0].reference_arn #=> String
1398
- # resp.sources[0].sample_id #=> String
1399
- # resp.sources[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
1400
1577
  # resp.sources[0].source_files.source1 #=> String
1401
1578
  # resp.sources[0].source_files.source2 #=> String
1579
+ # resp.sources[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
1402
1580
  # resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
1403
1581
  # resp.sources[0].status_message #=> String
1404
1582
  # resp.sources[0].subject_id #=> String
1583
+ # resp.sources[0].sample_id #=> String
1584
+ # resp.sources[0].generated_from #=> String
1585
+ # resp.sources[0].reference_arn #=> String
1586
+ # resp.sources[0].name #=> String
1587
+ # resp.sources[0].description #=> String
1405
1588
  # resp.sources[0].tags #=> Hash
1406
1589
  # resp.sources[0].tags["TagKey"] #=> String
1407
- # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1408
- # resp.status_message #=> String
1409
1590
  #
1410
1591
  #
1411
1592
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1431,19 +1612,20 @@ module Aws::Omics
1431
1612
  #
1432
1613
  # @return [Types::GetReadSetMetadataResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1433
1614
  #
1615
+ # * {Types::GetReadSetMetadataResponse#id #id} => String
1434
1616
  # * {Types::GetReadSetMetadataResponse#arn #arn} => String
1435
- # * {Types::GetReadSetMetadataResponse#creation_time #creation_time} => Time
1617
+ # * {Types::GetReadSetMetadataResponse#sequence_store_id #sequence_store_id} => String
1618
+ # * {Types::GetReadSetMetadataResponse#subject_id #subject_id} => String
1619
+ # * {Types::GetReadSetMetadataResponse#sample_id #sample_id} => String
1620
+ # * {Types::GetReadSetMetadataResponse#status #status} => String
1621
+ # * {Types::GetReadSetMetadataResponse#name #name} => String
1436
1622
  # * {Types::GetReadSetMetadataResponse#description #description} => String
1437
1623
  # * {Types::GetReadSetMetadataResponse#file_type #file_type} => String
1438
- # * {Types::GetReadSetMetadataResponse#files #files} => Types::ReadSetFiles
1439
- # * {Types::GetReadSetMetadataResponse#id #id} => String
1440
- # * {Types::GetReadSetMetadataResponse#name #name} => String
1441
- # * {Types::GetReadSetMetadataResponse#reference_arn #reference_arn} => String
1442
- # * {Types::GetReadSetMetadataResponse#sample_id #sample_id} => String
1624
+ # * {Types::GetReadSetMetadataResponse#creation_time #creation_time} => Time
1443
1625
  # * {Types::GetReadSetMetadataResponse#sequence_information #sequence_information} => Types::SequenceInformation
1444
- # * {Types::GetReadSetMetadataResponse#sequence_store_id #sequence_store_id} => String
1445
- # * {Types::GetReadSetMetadataResponse#status #status} => String
1446
- # * {Types::GetReadSetMetadataResponse#subject_id #subject_id} => String
1626
+ # * {Types::GetReadSetMetadataResponse#reference_arn #reference_arn} => String
1627
+ # * {Types::GetReadSetMetadataResponse#files #files} => Types::ReadSetFiles
1628
+ # * {Types::GetReadSetMetadataResponse#status_message #status_message} => String
1447
1629
  #
1448
1630
  # @example Request syntax with placeholder values
1449
1631
  #
@@ -1454,32 +1636,33 @@ module Aws::Omics
1454
1636
  #
1455
1637
  # @example Response structure
1456
1638
  #
1639
+ # resp.id #=> String
1457
1640
  # resp.arn #=> String
1458
- # resp.creation_time #=> Time
1641
+ # resp.sequence_store_id #=> String
1642
+ # resp.subject_id #=> String
1643
+ # resp.sample_id #=> String
1644
+ # resp.status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "PROCESSING_UPLOAD", "UPLOAD_FAILED"
1645
+ # resp.name #=> String
1459
1646
  # resp.description #=> String
1460
1647
  # resp.file_type #=> String, one of "FASTQ", "BAM", "CRAM"
1461
- # resp.files.index.content_length #=> Integer
1462
- # resp.files.index.part_size #=> Integer
1463
- # resp.files.index.total_parts #=> Integer
1464
- # resp.files.source1.content_length #=> Integer
1465
- # resp.files.source1.part_size #=> Integer
1648
+ # resp.creation_time #=> Time
1649
+ # resp.sequence_information.total_read_count #=> Integer
1650
+ # resp.sequence_information.total_base_count #=> Integer
1651
+ # resp.sequence_information.generated_from #=> String
1652
+ # resp.sequence_information.alignment #=> String
1653
+ # resp.reference_arn #=> String
1466
1654
  # resp.files.source1.total_parts #=> Integer
1467
- # resp.files.source2.content_length #=> Integer
1468
- # resp.files.source2.part_size #=> Integer
1655
+ # resp.files.source1.part_size #=> Integer
1656
+ # resp.files.source1.content_length #=> Integer
1469
1657
  # resp.files.source2.total_parts #=> Integer
1470
- # resp.id #=> String
1471
- # resp.name #=> String
1472
- # resp.reference_arn #=> String
1473
- # resp.sample_id #=> String
1474
- # resp.sequence_information.alignment #=> String
1475
- # resp.sequence_information.generated_from #=> String
1476
- # resp.sequence_information.total_base_count #=> Integer
1477
- # resp.sequence_information.total_read_count #=> Integer
1478
- # resp.sequence_store_id #=> String
1479
- # resp.status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED"
1480
- # resp.subject_id #=> String
1481
- #
1482
- # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetMetadata AWS API Documentation
1658
+ # resp.files.source2.part_size #=> Integer
1659
+ # resp.files.source2.content_length #=> Integer
1660
+ # resp.files.index.total_parts #=> Integer
1661
+ # resp.files.index.part_size #=> Integer
1662
+ # resp.files.index.content_length #=> Integer
1663
+ # resp.status_message #=> String
1664
+ #
1665
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetMetadata AWS API Documentation
1483
1666
  #
1484
1667
  # @overload get_read_set_metadata(params = {})
1485
1668
  # @param [Hash] params ({})
@@ -1490,20 +1673,20 @@ module Aws::Omics
1490
1673
 
1491
1674
  # Gets a reference file.
1492
1675
  #
1493
- # @option params [String] :file
1494
- # The file to retrieve.
1495
- #
1496
1676
  # @option params [required, String] :id
1497
1677
  # The reference's ID.
1498
1678
  #
1499
- # @option params [required, Integer] :part_number
1500
- # The part number to retrieve.
1679
+ # @option params [required, String] :reference_store_id
1680
+ # The reference's store ID.
1501
1681
  #
1502
1682
  # @option params [String] :range
1503
1683
  # The range to retrieve.
1504
1684
  #
1505
- # @option params [required, String] :reference_store_id
1506
- # The reference's store ID.
1685
+ # @option params [required, Integer] :part_number
1686
+ # The part number to retrieve.
1687
+ #
1688
+ # @option params [String] :file
1689
+ # The file to retrieve.
1507
1690
  #
1508
1691
  # @return [Types::GetReferenceResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1509
1692
  #
@@ -1512,11 +1695,11 @@ module Aws::Omics
1512
1695
  # @example Request syntax with placeholder values
1513
1696
  #
1514
1697
  # resp = client.get_reference({
1515
- # file: "SOURCE", # accepts SOURCE, INDEX
1516
1698
  # id: "ReferenceId", # required
1517
- # part_number: 1, # required
1518
- # range: "Range",
1519
1699
  # reference_store_id: "ReferenceStoreId", # required
1700
+ # range: "Range",
1701
+ # part_number: 1, # required
1702
+ # file: "SOURCE", # accepts SOURCE, INDEX
1520
1703
  # })
1521
1704
  #
1522
1705
  # @example Response structure
@@ -1542,14 +1725,14 @@ module Aws::Omics
1542
1725
  #
1543
1726
  # @return [Types::GetReferenceImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1544
1727
  #
1545
- # * {Types::GetReferenceImportJobResponse#completion_time #completion_time} => Time
1546
- # * {Types::GetReferenceImportJobResponse#creation_time #creation_time} => Time
1547
1728
  # * {Types::GetReferenceImportJobResponse#id #id} => String
1548
1729
  # * {Types::GetReferenceImportJobResponse#reference_store_id #reference_store_id} => String
1549
1730
  # * {Types::GetReferenceImportJobResponse#role_arn #role_arn} => String
1550
- # * {Types::GetReferenceImportJobResponse#sources #sources} => Array&lt;Types::ImportReferenceSourceItem&gt;
1551
1731
  # * {Types::GetReferenceImportJobResponse#status #status} => String
1552
1732
  # * {Types::GetReferenceImportJobResponse#status_message #status_message} => String
1733
+ # * {Types::GetReferenceImportJobResponse#creation_time #creation_time} => Time
1734
+ # * {Types::GetReferenceImportJobResponse#completion_time #completion_time} => Time
1735
+ # * {Types::GetReferenceImportJobResponse#sources #sources} => Array&lt;Types::ImportReferenceSourceItem&gt;
1553
1736
  #
1554
1737
  # @example Request syntax with placeholder values
1555
1738
  #
@@ -1560,21 +1743,21 @@ module Aws::Omics
1560
1743
  #
1561
1744
  # @example Response structure
1562
1745
  #
1563
- # resp.completion_time #=> Time
1564
- # resp.creation_time #=> Time
1565
1746
  # resp.id #=> String
1566
1747
  # resp.reference_store_id #=> String
1567
1748
  # resp.role_arn #=> String
1749
+ # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1750
+ # resp.status_message #=> String
1751
+ # resp.creation_time #=> Time
1752
+ # resp.completion_time #=> Time
1568
1753
  # resp.sources #=> Array
1569
- # resp.sources[0].description #=> String
1570
- # resp.sources[0].name #=> String
1571
1754
  # resp.sources[0].source_file #=> String
1572
1755
  # resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
1573
1756
  # resp.sources[0].status_message #=> String
1757
+ # resp.sources[0].name #=> String
1758
+ # resp.sources[0].description #=> String
1574
1759
  # resp.sources[0].tags #=> Hash
1575
1760
  # resp.sources[0].tags["TagKey"] #=> String
1576
- # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1577
- # resp.status_message #=> String
1578
1761
  #
1579
1762
  #
1580
1763
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1600,16 +1783,16 @@ module Aws::Omics
1600
1783
  #
1601
1784
  # @return [Types::GetReferenceMetadataResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1602
1785
  #
1603
- # * {Types::GetReferenceMetadataResponse#arn #arn} => String
1604
- # * {Types::GetReferenceMetadataResponse#creation_time #creation_time} => Time
1605
- # * {Types::GetReferenceMetadataResponse#description #description} => String
1606
- # * {Types::GetReferenceMetadataResponse#files #files} => Types::ReferenceFiles
1607
1786
  # * {Types::GetReferenceMetadataResponse#id #id} => String
1608
- # * {Types::GetReferenceMetadataResponse#md5 #md5} => String
1609
- # * {Types::GetReferenceMetadataResponse#name #name} => String
1787
+ # * {Types::GetReferenceMetadataResponse#arn #arn} => String
1610
1788
  # * {Types::GetReferenceMetadataResponse#reference_store_id #reference_store_id} => String
1789
+ # * {Types::GetReferenceMetadataResponse#md5 #md5} => String
1611
1790
  # * {Types::GetReferenceMetadataResponse#status #status} => String
1791
+ # * {Types::GetReferenceMetadataResponse#name #name} => String
1792
+ # * {Types::GetReferenceMetadataResponse#description #description} => String
1793
+ # * {Types::GetReferenceMetadataResponse#creation_time #creation_time} => Time
1612
1794
  # * {Types::GetReferenceMetadataResponse#update_time #update_time} => Time
1795
+ # * {Types::GetReferenceMetadataResponse#files #files} => Types::ReferenceFiles
1613
1796
  #
1614
1797
  # @example Request syntax with placeholder values
1615
1798
  #
@@ -1620,21 +1803,21 @@ module Aws::Omics
1620
1803
  #
1621
1804
  # @example Response structure
1622
1805
  #
1623
- # resp.arn #=> String
1624
- # resp.creation_time #=> Time
1625
- # resp.description #=> String
1626
- # resp.files.index.content_length #=> Integer
1627
- # resp.files.index.part_size #=> Integer
1628
- # resp.files.index.total_parts #=> Integer
1629
- # resp.files.source.content_length #=> Integer
1630
- # resp.files.source.part_size #=> Integer
1631
- # resp.files.source.total_parts #=> Integer
1632
1806
  # resp.id #=> String
1633
- # resp.md5 #=> String
1634
- # resp.name #=> String
1807
+ # resp.arn #=> String
1635
1808
  # resp.reference_store_id #=> String
1809
+ # resp.md5 #=> String
1636
1810
  # resp.status #=> String, one of "ACTIVE", "DELETING", "DELETED"
1811
+ # resp.name #=> String
1812
+ # resp.description #=> String
1813
+ # resp.creation_time #=> Time
1637
1814
  # resp.update_time #=> Time
1815
+ # resp.files.source.total_parts #=> Integer
1816
+ # resp.files.source.part_size #=> Integer
1817
+ # resp.files.source.content_length #=> Integer
1818
+ # resp.files.index.total_parts #=> Integer
1819
+ # resp.files.index.part_size #=> Integer
1820
+ # resp.files.index.content_length #=> Integer
1638
1821
  #
1639
1822
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceMetadata AWS API Documentation
1640
1823
  #
@@ -1652,12 +1835,12 @@ module Aws::Omics
1652
1835
  #
1653
1836
  # @return [Types::GetReferenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1654
1837
  #
1655
- # * {Types::GetReferenceStoreResponse#arn #arn} => String
1656
- # * {Types::GetReferenceStoreResponse#creation_time #creation_time} => Time
1657
- # * {Types::GetReferenceStoreResponse#description #description} => String
1658
1838
  # * {Types::GetReferenceStoreResponse#id #id} => String
1839
+ # * {Types::GetReferenceStoreResponse#arn #arn} => String
1659
1840
  # * {Types::GetReferenceStoreResponse#name #name} => String
1841
+ # * {Types::GetReferenceStoreResponse#description #description} => String
1660
1842
  # * {Types::GetReferenceStoreResponse#sse_config #sse_config} => Types::SseConfig
1843
+ # * {Types::GetReferenceStoreResponse#creation_time #creation_time} => Time
1661
1844
  #
1662
1845
  # @example Request syntax with placeholder values
1663
1846
  #
@@ -1667,13 +1850,13 @@ module Aws::Omics
1667
1850
  #
1668
1851
  # @example Response structure
1669
1852
  #
1670
- # resp.arn #=> String
1671
- # resp.creation_time #=> Time
1672
- # resp.description #=> String
1673
1853
  # resp.id #=> String
1854
+ # resp.arn #=> String
1674
1855
  # resp.name #=> String
1675
- # resp.sse_config.key_arn #=> String
1856
+ # resp.description #=> String
1676
1857
  # resp.sse_config.type #=> String, one of "KMS"
1858
+ # resp.sse_config.key_arn #=> String
1859
+ # resp.creation_time #=> Time
1677
1860
  #
1678
1861
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceStore AWS API Documentation
1679
1862
  #
@@ -1686,71 +1869,73 @@ module Aws::Omics
1686
1869
 
1687
1870
  # Gets information about a workflow run.
1688
1871
  #
1689
- # @option params [Array<String>] :export
1690
- # The run's export format.
1691
- #
1692
1872
  # @option params [required, String] :id
1693
1873
  # The run's ID.
1694
1874
  #
1875
+ # @option params [Array<String>] :export
1876
+ # The run's export format.
1877
+ #
1695
1878
  # @return [Types::GetRunResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1696
1879
  #
1697
1880
  # * {Types::GetRunResponse#arn #arn} => String
1698
- # * {Types::GetRunResponse#creation_time #creation_time} => Time
1699
- # * {Types::GetRunResponse#definition #definition} => String
1700
- # * {Types::GetRunResponse#digest #digest} => String
1701
1881
  # * {Types::GetRunResponse#id #id} => String
1702
- # * {Types::GetRunResponse#log_level #log_level} => String
1882
+ # * {Types::GetRunResponse#status #status} => String
1883
+ # * {Types::GetRunResponse#workflow_id #workflow_id} => String
1884
+ # * {Types::GetRunResponse#workflow_type #workflow_type} => String
1885
+ # * {Types::GetRunResponse#run_id #run_id} => String
1886
+ # * {Types::GetRunResponse#role_arn #role_arn} => String
1703
1887
  # * {Types::GetRunResponse#name #name} => String
1704
- # * {Types::GetRunResponse#output_uri #output_uri} => String
1705
- # * {Types::GetRunResponse#parameters #parameters} => Hash,Array,String,Numeric,Boolean
1888
+ # * {Types::GetRunResponse#run_group_id #run_group_id} => String
1706
1889
  # * {Types::GetRunResponse#priority #priority} => Integer
1890
+ # * {Types::GetRunResponse#definition #definition} => String
1891
+ # * {Types::GetRunResponse#digest #digest} => String
1892
+ # * {Types::GetRunResponse#parameters #parameters} => Hash,Array,String,Numeric,Boolean
1893
+ # * {Types::GetRunResponse#storage_capacity #storage_capacity} => Integer
1894
+ # * {Types::GetRunResponse#output_uri #output_uri} => String
1895
+ # * {Types::GetRunResponse#log_level #log_level} => String
1707
1896
  # * {Types::GetRunResponse#resource_digests #resource_digests} => Hash&lt;String,String&gt;
1708
- # * {Types::GetRunResponse#role_arn #role_arn} => String
1709
- # * {Types::GetRunResponse#run_group_id #run_group_id} => String
1710
- # * {Types::GetRunResponse#run_id #run_id} => String
1711
- # * {Types::GetRunResponse#start_time #start_time} => Time
1712
1897
  # * {Types::GetRunResponse#started_by #started_by} => String
1713
- # * {Types::GetRunResponse#status #status} => String
1714
- # * {Types::GetRunResponse#status_message #status_message} => String
1898
+ # * {Types::GetRunResponse#creation_time #creation_time} => Time
1899
+ # * {Types::GetRunResponse#start_time #start_time} => Time
1715
1900
  # * {Types::GetRunResponse#stop_time #stop_time} => Time
1716
- # * {Types::GetRunResponse#storage_capacity #storage_capacity} => Integer
1901
+ # * {Types::GetRunResponse#status_message #status_message} => String
1717
1902
  # * {Types::GetRunResponse#tags #tags} => Hash&lt;String,String&gt;
1718
- # * {Types::GetRunResponse#workflow_id #workflow_id} => String
1719
- # * {Types::GetRunResponse#workflow_type #workflow_type} => String
1903
+ # * {Types::GetRunResponse#accelerators #accelerators} => String
1720
1904
  #
1721
1905
  # @example Request syntax with placeholder values
1722
1906
  #
1723
1907
  # resp = client.get_run({
1724
- # export: ["DEFINITION"], # accepts DEFINITION
1725
1908
  # id: "RunId", # required
1909
+ # export: ["DEFINITION"], # accepts DEFINITION
1726
1910
  # })
1727
1911
  #
1728
1912
  # @example Response structure
1729
1913
  #
1730
1914
  # resp.arn #=> String
1731
- # resp.creation_time #=> Time
1732
- # resp.definition #=> String
1733
- # resp.digest #=> String
1734
1915
  # resp.id #=> String
1735
- # resp.log_level #=> String, one of "OFF", "FATAL", "ERROR", "ALL"
1916
+ # resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
1917
+ # resp.workflow_id #=> String
1918
+ # resp.workflow_type #=> String, one of "PRIVATE", "READY2RUN"
1919
+ # resp.run_id #=> String
1920
+ # resp.role_arn #=> String
1736
1921
  # resp.name #=> String
1737
- # resp.output_uri #=> String
1922
+ # resp.run_group_id #=> String
1738
1923
  # resp.priority #=> Integer
1924
+ # resp.definition #=> String
1925
+ # resp.digest #=> String
1926
+ # resp.storage_capacity #=> Integer
1927
+ # resp.output_uri #=> String
1928
+ # resp.log_level #=> String, one of "OFF", "FATAL", "ERROR", "ALL"
1739
1929
  # resp.resource_digests #=> Hash
1740
1930
  # resp.resource_digests["RunResourceDigestKey"] #=> String
1741
- # resp.role_arn #=> String
1742
- # resp.run_group_id #=> String
1743
- # resp.run_id #=> String
1744
- # resp.start_time #=> Time
1745
1931
  # resp.started_by #=> String
1746
- # resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
1747
- # resp.status_message #=> String
1932
+ # resp.creation_time #=> Time
1933
+ # resp.start_time #=> Time
1748
1934
  # resp.stop_time #=> Time
1749
- # resp.storage_capacity #=> Integer
1935
+ # resp.status_message #=> String
1750
1936
  # resp.tags #=> Hash
1751
1937
  # resp.tags["TagKey"] #=> String
1752
- # resp.workflow_id #=> String
1753
- # resp.workflow_type #=> String, one of "PRIVATE"
1938
+ # resp.accelerators #=> String, one of "GPU"
1754
1939
  #
1755
1940
  #
1756
1941
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1775,13 +1960,14 @@ module Aws::Omics
1775
1960
  # @return [Types::GetRunGroupResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1776
1961
  #
1777
1962
  # * {Types::GetRunGroupResponse#arn #arn} => String
1778
- # * {Types::GetRunGroupResponse#creation_time #creation_time} => Time
1779
1963
  # * {Types::GetRunGroupResponse#id #id} => String
1964
+ # * {Types::GetRunGroupResponse#name #name} => String
1780
1965
  # * {Types::GetRunGroupResponse#max_cpus #max_cpus} => Integer
1781
- # * {Types::GetRunGroupResponse#max_duration #max_duration} => Integer
1782
1966
  # * {Types::GetRunGroupResponse#max_runs #max_runs} => Integer
1783
- # * {Types::GetRunGroupResponse#name #name} => String
1967
+ # * {Types::GetRunGroupResponse#max_duration #max_duration} => Integer
1968
+ # * {Types::GetRunGroupResponse#creation_time #creation_time} => Time
1784
1969
  # * {Types::GetRunGroupResponse#tags #tags} => Hash&lt;String,String&gt;
1970
+ # * {Types::GetRunGroupResponse#max_gpus #max_gpus} => Integer
1785
1971
  #
1786
1972
  # @example Request syntax with placeholder values
1787
1973
  #
@@ -1792,14 +1978,15 @@ module Aws::Omics
1792
1978
  # @example Response structure
1793
1979
  #
1794
1980
  # resp.arn #=> String
1795
- # resp.creation_time #=> Time
1796
1981
  # resp.id #=> String
1982
+ # resp.name #=> String
1797
1983
  # resp.max_cpus #=> Integer
1798
- # resp.max_duration #=> Integer
1799
1984
  # resp.max_runs #=> Integer
1800
- # resp.name #=> String
1985
+ # resp.max_duration #=> Integer
1986
+ # resp.creation_time #=> Time
1801
1987
  # resp.tags #=> Hash
1802
1988
  # resp.tags["TagKey"] #=> String
1989
+ # resp.max_gpus #=> Integer
1803
1990
  #
1804
1991
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetRunGroup AWS API Documentation
1805
1992
  #
@@ -1820,16 +2007,17 @@ module Aws::Omics
1820
2007
  #
1821
2008
  # @return [Types::GetRunTaskResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1822
2009
  #
2010
+ # * {Types::GetRunTaskResponse#task_id #task_id} => String
2011
+ # * {Types::GetRunTaskResponse#status #status} => String
2012
+ # * {Types::GetRunTaskResponse#name #name} => String
1823
2013
  # * {Types::GetRunTaskResponse#cpus #cpus} => Integer
1824
- # * {Types::GetRunTaskResponse#creation_time #creation_time} => Time
1825
- # * {Types::GetRunTaskResponse#log_stream #log_stream} => String
1826
2014
  # * {Types::GetRunTaskResponse#memory #memory} => Integer
1827
- # * {Types::GetRunTaskResponse#name #name} => String
2015
+ # * {Types::GetRunTaskResponse#creation_time #creation_time} => Time
1828
2016
  # * {Types::GetRunTaskResponse#start_time #start_time} => Time
1829
- # * {Types::GetRunTaskResponse#status #status} => String
1830
- # * {Types::GetRunTaskResponse#status_message #status_message} => String
1831
2017
  # * {Types::GetRunTaskResponse#stop_time #stop_time} => Time
1832
- # * {Types::GetRunTaskResponse#task_id #task_id} => String
2018
+ # * {Types::GetRunTaskResponse#status_message #status_message} => String
2019
+ # * {Types::GetRunTaskResponse#log_stream #log_stream} => String
2020
+ # * {Types::GetRunTaskResponse#gpus #gpus} => Integer
1833
2021
  #
1834
2022
  # @example Request syntax with placeholder values
1835
2023
  #
@@ -1840,16 +2028,17 @@ module Aws::Omics
1840
2028
  #
1841
2029
  # @example Response structure
1842
2030
  #
2031
+ # resp.task_id #=> String
2032
+ # resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
2033
+ # resp.name #=> String
1843
2034
  # resp.cpus #=> Integer
1844
- # resp.creation_time #=> Time
1845
- # resp.log_stream #=> String
1846
2035
  # resp.memory #=> Integer
1847
- # resp.name #=> String
2036
+ # resp.creation_time #=> Time
1848
2037
  # resp.start_time #=> Time
1849
- # resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
1850
- # resp.status_message #=> String
1851
2038
  # resp.stop_time #=> Time
1852
- # resp.task_id #=> String
2039
+ # resp.status_message #=> String
2040
+ # resp.log_stream #=> String
2041
+ # resp.gpus #=> Integer
1853
2042
  #
1854
2043
  #
1855
2044
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1873,12 +2062,13 @@ module Aws::Omics
1873
2062
  #
1874
2063
  # @return [Types::GetSequenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1875
2064
  #
1876
- # * {Types::GetSequenceStoreResponse#arn #arn} => String
1877
- # * {Types::GetSequenceStoreResponse#creation_time #creation_time} => Time
1878
- # * {Types::GetSequenceStoreResponse#description #description} => String
1879
2065
  # * {Types::GetSequenceStoreResponse#id #id} => String
2066
+ # * {Types::GetSequenceStoreResponse#arn #arn} => String
1880
2067
  # * {Types::GetSequenceStoreResponse#name #name} => String
2068
+ # * {Types::GetSequenceStoreResponse#description #description} => String
1881
2069
  # * {Types::GetSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig
2070
+ # * {Types::GetSequenceStoreResponse#creation_time #creation_time} => Time
2071
+ # * {Types::GetSequenceStoreResponse#fallback_location #fallback_location} => String
1882
2072
  #
1883
2073
  # @example Request syntax with placeholder values
1884
2074
  #
@@ -1888,13 +2078,14 @@ module Aws::Omics
1888
2078
  #
1889
2079
  # @example Response structure
1890
2080
  #
1891
- # resp.arn #=> String
1892
- # resp.creation_time #=> Time
1893
- # resp.description #=> String
1894
2081
  # resp.id #=> String
2082
+ # resp.arn #=> String
1895
2083
  # resp.name #=> String
1896
- # resp.sse_config.key_arn #=> String
2084
+ # resp.description #=> String
1897
2085
  # resp.sse_config.type #=> String, one of "KMS"
2086
+ # resp.sse_config.key_arn #=> String
2087
+ # resp.creation_time #=> Time
2088
+ # resp.fallback_location #=> String
1898
2089
  #
1899
2090
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetSequenceStore AWS API Documentation
1900
2091
  #
@@ -1912,16 +2103,17 @@ module Aws::Omics
1912
2103
  #
1913
2104
  # @return [Types::GetVariantImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1914
2105
  #
1915
- # * {Types::GetVariantImportResponse#completion_time #completion_time} => Time
1916
- # * {Types::GetVariantImportResponse#creation_time #creation_time} => Time
1917
- # * {Types::GetVariantImportResponse#destination_name #destination_name} => String
1918
2106
  # * {Types::GetVariantImportResponse#id #id} => String
1919
- # * {Types::GetVariantImportResponse#items #items} => Array&lt;Types::VariantImportItemDetail&gt;
2107
+ # * {Types::GetVariantImportResponse#destination_name #destination_name} => String
1920
2108
  # * {Types::GetVariantImportResponse#role_arn #role_arn} => String
1921
- # * {Types::GetVariantImportResponse#run_left_normalization #run_left_normalization} => Boolean
1922
2109
  # * {Types::GetVariantImportResponse#status #status} => String
1923
2110
  # * {Types::GetVariantImportResponse#status_message #status_message} => String
2111
+ # * {Types::GetVariantImportResponse#creation_time #creation_time} => Time
1924
2112
  # * {Types::GetVariantImportResponse#update_time #update_time} => Time
2113
+ # * {Types::GetVariantImportResponse#completion_time #completion_time} => Time
2114
+ # * {Types::GetVariantImportResponse#items #items} => Array&lt;Types::VariantImportItemDetail&gt;
2115
+ # * {Types::GetVariantImportResponse#run_left_normalization #run_left_normalization} => Boolean
2116
+ # * {Types::GetVariantImportResponse#annotation_fields #annotation_fields} => Hash&lt;String,String&gt;
1925
2117
  #
1926
2118
  # @example Request syntax with placeholder values
1927
2119
  #
@@ -1931,19 +2123,21 @@ module Aws::Omics
1931
2123
  #
1932
2124
  # @example Response structure
1933
2125
  #
1934
- # resp.completion_time #=> Time
1935
- # resp.creation_time #=> Time
1936
- # resp.destination_name #=> String
1937
2126
  # resp.id #=> String
1938
- # resp.items #=> Array
1939
- # resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
1940
- # resp.items[0].source #=> String
1941
- # resp.items[0].status_message #=> String
2127
+ # resp.destination_name #=> String
1942
2128
  # resp.role_arn #=> String
1943
- # resp.run_left_normalization #=> Boolean
1944
2129
  # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
1945
2130
  # resp.status_message #=> String
2131
+ # resp.creation_time #=> Time
1946
2132
  # resp.update_time #=> Time
2133
+ # resp.completion_time #=> Time
2134
+ # resp.items #=> Array
2135
+ # resp.items[0].source #=> String
2136
+ # resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
2137
+ # resp.items[0].status_message #=> String
2138
+ # resp.run_left_normalization #=> Boolean
2139
+ # resp.annotation_fields #=> Hash
2140
+ # resp.annotation_fields["AnnotationFieldMapKeyString"] #=> String
1947
2141
  #
1948
2142
  #
1949
2143
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1966,18 +2160,18 @@ module Aws::Omics
1966
2160
  #
1967
2161
  # @return [Types::GetVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1968
2162
  #
1969
- # * {Types::GetVariantStoreResponse#creation_time #creation_time} => Time
1970
- # * {Types::GetVariantStoreResponse#description #description} => String
1971
2163
  # * {Types::GetVariantStoreResponse#id #id} => String
1972
- # * {Types::GetVariantStoreResponse#name #name} => String
1973
2164
  # * {Types::GetVariantStoreResponse#reference #reference} => Types::ReferenceItem
1974
- # * {Types::GetVariantStoreResponse#sse_config #sse_config} => Types::SseConfig
1975
2165
  # * {Types::GetVariantStoreResponse#status #status} => String
1976
- # * {Types::GetVariantStoreResponse#status_message #status_message} => String
1977
2166
  # * {Types::GetVariantStoreResponse#store_arn #store_arn} => String
1978
- # * {Types::GetVariantStoreResponse#store_size_bytes #store_size_bytes} => Integer
1979
- # * {Types::GetVariantStoreResponse#tags #tags} => Hash&lt;String,String&gt;
2167
+ # * {Types::GetVariantStoreResponse#name #name} => String
2168
+ # * {Types::GetVariantStoreResponse#description #description} => String
2169
+ # * {Types::GetVariantStoreResponse#sse_config #sse_config} => Types::SseConfig
2170
+ # * {Types::GetVariantStoreResponse#creation_time #creation_time} => Time
1980
2171
  # * {Types::GetVariantStoreResponse#update_time #update_time} => Time
2172
+ # * {Types::GetVariantStoreResponse#tags #tags} => Hash&lt;String,String&gt;
2173
+ # * {Types::GetVariantStoreResponse#status_message #status_message} => String
2174
+ # * {Types::GetVariantStoreResponse#store_size_bytes #store_size_bytes} => Integer
1981
2175
  #
1982
2176
  # @example Request syntax with placeholder values
1983
2177
  #
@@ -1987,20 +2181,20 @@ module Aws::Omics
1987
2181
  #
1988
2182
  # @example Response structure
1989
2183
  #
1990
- # resp.creation_time #=> Time
1991
- # resp.description #=> String
1992
2184
  # resp.id #=> String
1993
- # resp.name #=> String
1994
2185
  # resp.reference.reference_arn #=> String
1995
- # resp.sse_config.key_arn #=> String
1996
- # resp.sse_config.type #=> String, one of "KMS"
1997
2186
  # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
1998
- # resp.status_message #=> String
1999
2187
  # resp.store_arn #=> String
2000
- # resp.store_size_bytes #=> Integer
2001
- # resp.tags #=> Hash
2002
- # resp.tags["TagKey"] #=> String
2188
+ # resp.name #=> String
2189
+ # resp.description #=> String
2190
+ # resp.sse_config.type #=> String, one of "KMS"
2191
+ # resp.sse_config.key_arn #=> String
2192
+ # resp.creation_time #=> Time
2003
2193
  # resp.update_time #=> Time
2194
+ # resp.tags #=> Hash
2195
+ # resp.tags["TagKey"] #=> String
2196
+ # resp.status_message #=> String
2197
+ # resp.store_size_bytes #=> Integer
2004
2198
  #
2005
2199
  #
2006
2200
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -2019,61 +2213,66 @@ module Aws::Omics
2019
2213
 
2020
2214
  # Gets information about a workflow.
2021
2215
  #
2022
- # @option params [Array<String>] :export
2023
- # The export format for the workflow.
2024
- #
2025
2216
  # @option params [required, String] :id
2026
2217
  # The workflow's ID.
2027
2218
  #
2028
2219
  # @option params [String] :type
2029
2220
  # The workflow's type.
2030
2221
  #
2222
+ # @option params [Array<String>] :export
2223
+ # The export format for the workflow.
2224
+ #
2031
2225
  # @return [Types::GetWorkflowResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2032
2226
  #
2033
2227
  # * {Types::GetWorkflowResponse#arn #arn} => String
2034
- # * {Types::GetWorkflowResponse#creation_time #creation_time} => Time
2035
- # * {Types::GetWorkflowResponse#definition #definition} => String
2228
+ # * {Types::GetWorkflowResponse#id #id} => String
2229
+ # * {Types::GetWorkflowResponse#status #status} => String
2230
+ # * {Types::GetWorkflowResponse#type #type} => String
2231
+ # * {Types::GetWorkflowResponse#name #name} => String
2036
2232
  # * {Types::GetWorkflowResponse#description #description} => String
2037
- # * {Types::GetWorkflowResponse#digest #digest} => String
2038
2233
  # * {Types::GetWorkflowResponse#engine #engine} => String
2039
- # * {Types::GetWorkflowResponse#id #id} => String
2234
+ # * {Types::GetWorkflowResponse#definition #definition} => String
2040
2235
  # * {Types::GetWorkflowResponse#main #main} => String
2041
- # * {Types::GetWorkflowResponse#name #name} => String
2236
+ # * {Types::GetWorkflowResponse#digest #digest} => String
2042
2237
  # * {Types::GetWorkflowResponse#parameter_template #parameter_template} => Hash&lt;String,Types::WorkflowParameter&gt;
2043
- # * {Types::GetWorkflowResponse#status #status} => String
2044
- # * {Types::GetWorkflowResponse#status_message #status_message} => String
2045
2238
  # * {Types::GetWorkflowResponse#storage_capacity #storage_capacity} => Integer
2239
+ # * {Types::GetWorkflowResponse#creation_time #creation_time} => Time
2240
+ # * {Types::GetWorkflowResponse#status_message #status_message} => String
2046
2241
  # * {Types::GetWorkflowResponse#tags #tags} => Hash&lt;String,String&gt;
2047
- # * {Types::GetWorkflowResponse#type #type} => String
2242
+ # * {Types::GetWorkflowResponse#metadata #metadata} => Hash&lt;String,String&gt;
2243
+ # * {Types::GetWorkflowResponse#accelerators #accelerators} => String
2048
2244
  #
2049
2245
  # @example Request syntax with placeholder values
2050
2246
  #
2051
2247
  # resp = client.get_workflow({
2052
- # export: ["DEFINITION"], # accepts DEFINITION
2053
2248
  # id: "WorkflowId", # required
2054
- # type: "PRIVATE", # accepts PRIVATE
2249
+ # type: "PRIVATE", # accepts PRIVATE, READY2RUN
2250
+ # export: ["DEFINITION"], # accepts DEFINITION
2055
2251
  # })
2056
2252
  #
2057
2253
  # @example Response structure
2058
2254
  #
2059
2255
  # resp.arn #=> String
2060
- # resp.creation_time #=> Time
2061
- # resp.definition #=> String
2256
+ # resp.id #=> String
2257
+ # resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
2258
+ # resp.type #=> String, one of "PRIVATE", "READY2RUN"
2259
+ # resp.name #=> String
2062
2260
  # resp.description #=> String
2063
- # resp.digest #=> String
2064
2261
  # resp.engine #=> String, one of "WDL", "NEXTFLOW"
2065
- # resp.id #=> String
2262
+ # resp.definition #=> String
2066
2263
  # resp.main #=> String
2067
- # resp.name #=> String
2264
+ # resp.digest #=> String
2068
2265
  # resp.parameter_template #=> Hash
2069
2266
  # resp.parameter_template["WorkflowParameterName"].description #=> String
2070
2267
  # resp.parameter_template["WorkflowParameterName"].optional #=> Boolean
2071
- # resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
2072
- # resp.status_message #=> String
2073
2268
  # resp.storage_capacity #=> Integer
2269
+ # resp.creation_time #=> Time
2270
+ # resp.status_message #=> String
2074
2271
  # resp.tags #=> Hash
2075
2272
  # resp.tags["TagKey"] #=> String
2076
- # resp.type #=> String, one of "PRIVATE"
2273
+ # resp.metadata #=> Hash
2274
+ # resp.metadata["WorkflowMetadataKey"] #=> String
2275
+ # resp.accelerators #=> String, one of "GPU"
2077
2276
  #
2078
2277
  #
2079
2278
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -2091,19 +2290,19 @@ module Aws::Omics
2091
2290
 
2092
2291
  # Retrieves a list of annotation import jobs.
2093
2292
  #
2094
- # @option params [Types::ListAnnotationImportJobsFilter] :filter
2095
- # A filter to apply to the list.
2293
+ # @option params [Integer] :max_results
2294
+ # The maximum number of jobs to return in one page of results.
2096
2295
  #
2097
2296
  # @option params [Array<String>] :ids
2098
2297
  # IDs of annotation import jobs to retrieve.
2099
2298
  #
2100
- # @option params [Integer] :max_results
2101
- # The maximum number of jobs to return in one page of results.
2102
- #
2103
2299
  # @option params [String] :next_token
2104
2300
  # Specify the pagination token from a previous request to retrieve the
2105
2301
  # next page of results.
2106
2302
  #
2303
+ # @option params [Types::ListAnnotationImportJobsFilter] :filter
2304
+ # A filter to apply to the list.
2305
+ #
2107
2306
  # @return [Types::ListAnnotationImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2108
2307
  #
2109
2308
  # * {Types::ListAnnotationImportJobsResponse#annotation_import_jobs #annotation_import_jobs} => Array&lt;Types::AnnotationImportJobItem&gt;
@@ -2114,26 +2313,28 @@ module Aws::Omics
2114
2313
  # @example Request syntax with placeholder values
2115
2314
  #
2116
2315
  # resp = client.list_annotation_import_jobs({
2316
+ # max_results: 1,
2317
+ # ids: ["ResourceIdentifier"],
2318
+ # next_token: "ListAnnotationImportJobsRequestNextTokenString",
2117
2319
  # filter: {
2118
2320
  # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED, COMPLETED_WITH_FAILURES
2119
2321
  # store_name: "String",
2120
2322
  # },
2121
- # ids: ["ResourceIdentifier"],
2122
- # max_results: 1,
2123
- # next_token: "ListAnnotationImportJobsRequestNextTokenString",
2124
2323
  # })
2125
2324
  #
2126
2325
  # @example Response structure
2127
2326
  #
2128
2327
  # resp.annotation_import_jobs #=> Array
2129
- # resp.annotation_import_jobs[0].completion_time #=> Time
2130
- # resp.annotation_import_jobs[0].creation_time #=> Time
2131
- # resp.annotation_import_jobs[0].destination_name #=> String
2132
2328
  # resp.annotation_import_jobs[0].id #=> String
2329
+ # resp.annotation_import_jobs[0].destination_name #=> String
2133
2330
  # resp.annotation_import_jobs[0].role_arn #=> String
2134
- # resp.annotation_import_jobs[0].run_left_normalization #=> Boolean
2135
2331
  # resp.annotation_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
2332
+ # resp.annotation_import_jobs[0].creation_time #=> Time
2136
2333
  # resp.annotation_import_jobs[0].update_time #=> Time
2334
+ # resp.annotation_import_jobs[0].completion_time #=> Time
2335
+ # resp.annotation_import_jobs[0].run_left_normalization #=> Boolean
2336
+ # resp.annotation_import_jobs[0].annotation_fields #=> Hash
2337
+ # resp.annotation_import_jobs[0].annotation_fields["AnnotationFieldMapKeyString"] #=> String
2137
2338
  # resp.next_token #=> String
2138
2339
  #
2139
2340
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationImportJobs AWS API Documentation
@@ -2147,9 +2348,6 @@ module Aws::Omics
2147
2348
 
2148
2349
  # Retrieves a list of annotation stores.
2149
2350
  #
2150
- # @option params [Types::ListAnnotationStoresFilter] :filter
2151
- # A filter to apply to the list.
2152
- #
2153
2351
  # @option params [Array<String>] :ids
2154
2352
  # IDs of stores to list.
2155
2353
  #
@@ -2160,6 +2358,9 @@ module Aws::Omics
2160
2358
  # Specify the pagination token from a previous request to retrieve the
2161
2359
  # next page of results.
2162
2360
  #
2361
+ # @option params [Types::ListAnnotationStoresFilter] :filter
2362
+ # A filter to apply to the list.
2363
+ #
2163
2364
  # @return [Types::ListAnnotationStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2164
2365
  #
2165
2366
  # * {Types::ListAnnotationStoresResponse#annotation_stores #annotation_stores} => Array&lt;Types::AnnotationStoreItem&gt;
@@ -2170,30 +2371,30 @@ module Aws::Omics
2170
2371
  # @example Request syntax with placeholder values
2171
2372
  #
2172
2373
  # resp = client.list_annotation_stores({
2173
- # filter: {
2174
- # status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
2175
- # },
2176
2374
  # ids: ["ResourceIdentifier"],
2177
2375
  # max_results: 1,
2178
2376
  # next_token: "ListAnnotationStoresRequestNextTokenString",
2377
+ # filter: {
2378
+ # status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
2379
+ # },
2179
2380
  # })
2180
2381
  #
2181
2382
  # @example Response structure
2182
2383
  #
2183
2384
  # resp.annotation_stores #=> Array
2184
- # resp.annotation_stores[0].creation_time #=> Time
2185
- # resp.annotation_stores[0].description #=> String
2186
2385
  # resp.annotation_stores[0].id #=> String
2187
- # resp.annotation_stores[0].name #=> String
2188
2386
  # resp.annotation_stores[0].reference.reference_arn #=> String
2189
- # resp.annotation_stores[0].sse_config.key_arn #=> String
2190
- # resp.annotation_stores[0].sse_config.type #=> String, one of "KMS"
2191
2387
  # resp.annotation_stores[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
2192
- # resp.annotation_stores[0].status_message #=> String
2193
2388
  # resp.annotation_stores[0].store_arn #=> String
2389
+ # resp.annotation_stores[0].name #=> String
2194
2390
  # resp.annotation_stores[0].store_format #=> String, one of "GFF", "TSV", "VCF"
2195
- # resp.annotation_stores[0].store_size_bytes #=> Integer
2391
+ # resp.annotation_stores[0].description #=> String
2392
+ # resp.annotation_stores[0].sse_config.type #=> String, one of "KMS"
2393
+ # resp.annotation_stores[0].sse_config.key_arn #=> String
2394
+ # resp.annotation_stores[0].creation_time #=> Time
2196
2395
  # resp.annotation_stores[0].update_time #=> Time
2396
+ # resp.annotation_stores[0].status_message #=> String
2397
+ # resp.annotation_stores[0].store_size_bytes #=> Integer
2197
2398
  # resp.next_token #=> String
2198
2399
  #
2199
2400
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationStores AWS API Documentation
@@ -2205,10 +2406,64 @@ module Aws::Omics
2205
2406
  req.send_request(options)
2206
2407
  end
2207
2408
 
2409
+ # Lists all multipart read set uploads and their statuses.
2410
+ #
2411
+ # @option params [required, String] :sequence_store_id
2412
+ # The Sequence Store ID used for the multipart uploads.
2413
+ #
2414
+ # @option params [Integer] :max_results
2415
+ # The maximum number of multipart uploads returned in a page.
2416
+ #
2417
+ # @option params [String] :next_token
2418
+ # Next token returned in the response of a previous
2419
+ # ListMultipartReadSetUploads call. Used to get the next page of
2420
+ # results.
2421
+ #
2422
+ # @return [Types::ListMultipartReadSetUploadsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2423
+ #
2424
+ # * {Types::ListMultipartReadSetUploadsResponse#next_token #next_token} => String
2425
+ # * {Types::ListMultipartReadSetUploadsResponse#uploads #uploads} => Array&lt;Types::MultipartReadSetUploadListItem&gt;
2426
+ #
2427
+ # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2428
+ #
2429
+ # @example Request syntax with placeholder values
2430
+ #
2431
+ # resp = client.list_multipart_read_set_uploads({
2432
+ # sequence_store_id: "SequenceStoreId", # required
2433
+ # max_results: 1,
2434
+ # next_token: "NextToken",
2435
+ # })
2436
+ #
2437
+ # @example Response structure
2438
+ #
2439
+ # resp.next_token #=> String
2440
+ # resp.uploads #=> Array
2441
+ # resp.uploads[0].sequence_store_id #=> String
2442
+ # resp.uploads[0].upload_id #=> String
2443
+ # resp.uploads[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
2444
+ # resp.uploads[0].subject_id #=> String
2445
+ # resp.uploads[0].sample_id #=> String
2446
+ # resp.uploads[0].generated_from #=> String
2447
+ # resp.uploads[0].reference_arn #=> String
2448
+ # resp.uploads[0].name #=> String
2449
+ # resp.uploads[0].description #=> String
2450
+ # resp.uploads[0].tags #=> Hash
2451
+ # resp.uploads[0].tags["TagKey"] #=> String
2452
+ # resp.uploads[0].creation_time #=> Time
2453
+ #
2454
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListMultipartReadSetUploads AWS API Documentation
2455
+ #
2456
+ # @overload list_multipart_read_set_uploads(params = {})
2457
+ # @param [Hash] params ({})
2458
+ def list_multipart_read_set_uploads(params = {}, options = {})
2459
+ req = build_request(:list_multipart_read_set_uploads, params)
2460
+ req.send_request(options)
2461
+ end
2462
+
2208
2463
  # Retrieves a list of read set activation jobs.
2209
2464
  #
2210
- # @option params [Types::ActivateReadSetFilter] :filter
2211
- # A filter to apply to the list.
2465
+ # @option params [required, String] :sequence_store_id
2466
+ # The read set's sequence store ID.
2212
2467
  #
2213
2468
  # @option params [Integer] :max_results
2214
2469
  # The maximum number of read set activation jobs to return in one page
@@ -2218,38 +2473,38 @@ module Aws::Omics
2218
2473
  # Specify the pagination token from a previous request to retrieve the
2219
2474
  # next page of results.
2220
2475
  #
2221
- # @option params [required, String] :sequence_store_id
2222
- # The read set's sequence store ID.
2476
+ # @option params [Types::ActivateReadSetFilter] :filter
2477
+ # A filter to apply to the list.
2223
2478
  #
2224
2479
  # @return [Types::ListReadSetActivationJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2225
2480
  #
2226
- # * {Types::ListReadSetActivationJobsResponse#activation_jobs #activation_jobs} => Array&lt;Types::ActivateReadSetJobItem&gt;
2227
2481
  # * {Types::ListReadSetActivationJobsResponse#next_token #next_token} => String
2482
+ # * {Types::ListReadSetActivationJobsResponse#activation_jobs #activation_jobs} => Array&lt;Types::ActivateReadSetJobItem&gt;
2228
2483
  #
2229
2484
  # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2230
2485
  #
2231
2486
  # @example Request syntax with placeholder values
2232
2487
  #
2233
2488
  # resp = client.list_read_set_activation_jobs({
2489
+ # sequence_store_id: "SequenceStoreId", # required
2490
+ # max_results: 1,
2491
+ # next_token: "NextToken",
2234
2492
  # filter: {
2493
+ # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2235
2494
  # created_after: Time.now,
2236
2495
  # created_before: Time.now,
2237
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2238
2496
  # },
2239
- # max_results: 1,
2240
- # next_token: "NextToken",
2241
- # sequence_store_id: "SequenceStoreId", # required
2242
2497
  # })
2243
2498
  #
2244
2499
  # @example Response structure
2245
2500
  #
2501
+ # resp.next_token #=> String
2246
2502
  # resp.activation_jobs #=> Array
2247
- # resp.activation_jobs[0].completion_time #=> Time
2248
- # resp.activation_jobs[0].creation_time #=> Time
2249
2503
  # resp.activation_jobs[0].id #=> String
2250
2504
  # resp.activation_jobs[0].sequence_store_id #=> String
2251
2505
  # resp.activation_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
2252
- # resp.next_token #=> String
2506
+ # resp.activation_jobs[0].creation_time #=> Time
2507
+ # resp.activation_jobs[0].completion_time #=> Time
2253
2508
  #
2254
2509
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetActivationJobs AWS API Documentation
2255
2510
  #
@@ -2262,8 +2517,8 @@ module Aws::Omics
2262
2517
 
2263
2518
  # Retrieves a list of read set export jobs.
2264
2519
  #
2265
- # @option params [Types::ExportReadSetFilter] :filter
2266
- # A filter to apply to the list.
2520
+ # @option params [required, String] :sequence_store_id
2521
+ # The jobs' sequence store ID.
2267
2522
  #
2268
2523
  # @option params [Integer] :max_results
2269
2524
  # The maximum number of jobs to return in one page of results.
@@ -2272,39 +2527,39 @@ module Aws::Omics
2272
2527
  # Specify the pagination token from a previous request to retrieve the
2273
2528
  # next page of results.
2274
2529
  #
2275
- # @option params [required, String] :sequence_store_id
2276
- # The jobs' sequence store ID.
2530
+ # @option params [Types::ExportReadSetFilter] :filter
2531
+ # A filter to apply to the list.
2277
2532
  #
2278
2533
  # @return [Types::ListReadSetExportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2279
2534
  #
2280
- # * {Types::ListReadSetExportJobsResponse#export_jobs #export_jobs} => Array&lt;Types::ExportReadSetJobDetail&gt;
2281
2535
  # * {Types::ListReadSetExportJobsResponse#next_token #next_token} => String
2536
+ # * {Types::ListReadSetExportJobsResponse#export_jobs #export_jobs} => Array&lt;Types::ExportReadSetJobDetail&gt;
2282
2537
  #
2283
2538
  # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2284
2539
  #
2285
2540
  # @example Request syntax with placeholder values
2286
2541
  #
2287
2542
  # resp = client.list_read_set_export_jobs({
2543
+ # sequence_store_id: "SequenceStoreId", # required
2544
+ # max_results: 1,
2545
+ # next_token: "NextToken",
2288
2546
  # filter: {
2547
+ # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2289
2548
  # created_after: Time.now,
2290
2549
  # created_before: Time.now,
2291
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2292
2550
  # },
2293
- # max_results: 1,
2294
- # next_token: "NextToken",
2295
- # sequence_store_id: "SequenceStoreId", # required
2296
2551
  # })
2297
2552
  #
2298
2553
  # @example Response structure
2299
2554
  #
2555
+ # resp.next_token #=> String
2300
2556
  # resp.export_jobs #=> Array
2301
- # resp.export_jobs[0].completion_time #=> Time
2302
- # resp.export_jobs[0].creation_time #=> Time
2303
- # resp.export_jobs[0].destination #=> String
2304
2557
  # resp.export_jobs[0].id #=> String
2305
2558
  # resp.export_jobs[0].sequence_store_id #=> String
2559
+ # resp.export_jobs[0].destination #=> String
2306
2560
  # resp.export_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
2307
- # resp.next_token #=> String
2561
+ # resp.export_jobs[0].creation_time #=> Time
2562
+ # resp.export_jobs[0].completion_time #=> Time
2308
2563
  #
2309
2564
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetExportJobs AWS API Documentation
2310
2565
  #
@@ -2317,9 +2572,6 @@ module Aws::Omics
2317
2572
 
2318
2573
  # Retrieves a list of read set import jobs.
2319
2574
  #
2320
- # @option params [Types::ImportReadSetFilter] :filter
2321
- # A filter to apply to the list.
2322
- #
2323
2575
  # @option params [Integer] :max_results
2324
2576
  # The maximum number of jobs to return in one page of results.
2325
2577
  #
@@ -2330,36 +2582,39 @@ module Aws::Omics
2330
2582
  # @option params [required, String] :sequence_store_id
2331
2583
  # The jobs' sequence store ID.
2332
2584
  #
2585
+ # @option params [Types::ImportReadSetFilter] :filter
2586
+ # A filter to apply to the list.
2587
+ #
2333
2588
  # @return [Types::ListReadSetImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2334
2589
  #
2335
- # * {Types::ListReadSetImportJobsResponse#import_jobs #import_jobs} => Array&lt;Types::ImportReadSetJobItem&gt;
2336
2590
  # * {Types::ListReadSetImportJobsResponse#next_token #next_token} => String
2591
+ # * {Types::ListReadSetImportJobsResponse#import_jobs #import_jobs} => Array&lt;Types::ImportReadSetJobItem&gt;
2337
2592
  #
2338
2593
  # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2339
2594
  #
2340
2595
  # @example Request syntax with placeholder values
2341
2596
  #
2342
2597
  # resp = client.list_read_set_import_jobs({
2598
+ # max_results: 1,
2599
+ # next_token: "NextToken",
2600
+ # sequence_store_id: "SequenceStoreId", # required
2343
2601
  # filter: {
2602
+ # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2344
2603
  # created_after: Time.now,
2345
2604
  # created_before: Time.now,
2346
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2347
2605
  # },
2348
- # max_results: 1,
2349
- # next_token: "NextToken",
2350
- # sequence_store_id: "SequenceStoreId", # required
2351
2606
  # })
2352
2607
  #
2353
2608
  # @example Response structure
2354
2609
  #
2610
+ # resp.next_token #=> String
2355
2611
  # resp.import_jobs #=> Array
2356
- # resp.import_jobs[0].completion_time #=> Time
2357
- # resp.import_jobs[0].creation_time #=> Time
2358
2612
  # resp.import_jobs[0].id #=> String
2359
- # resp.import_jobs[0].role_arn #=> String
2360
2613
  # resp.import_jobs[0].sequence_store_id #=> String
2614
+ # resp.import_jobs[0].role_arn #=> String
2361
2615
  # resp.import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
2362
- # resp.next_token #=> String
2616
+ # resp.import_jobs[0].creation_time #=> Time
2617
+ # resp.import_jobs[0].completion_time #=> Time
2363
2618
  #
2364
2619
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetImportJobs AWS API Documentation
2365
2620
  #
@@ -2370,10 +2625,75 @@ module Aws::Omics
2370
2625
  req.send_request(options)
2371
2626
  end
2372
2627
 
2628
+ # This operation will list all parts in a requested multipart upload for
2629
+ # a sequence store.
2630
+ #
2631
+ # @option params [required, String] :sequence_store_id
2632
+ # The Sequence Store ID used for the multipart uploads.
2633
+ #
2634
+ # @option params [required, String] :upload_id
2635
+ # The ID for the initiated multipart upload.
2636
+ #
2637
+ # @option params [required, String] :part_source
2638
+ # The source file for the upload part.
2639
+ #
2640
+ # @option params [Integer] :max_results
2641
+ # The maximum number of read set upload parts returned in a page.
2642
+ #
2643
+ # @option params [String] :next_token
2644
+ # Next token returned in the response of a previous
2645
+ # ListReadSetUploadPartsRequest call. Used to get the next page of
2646
+ # results.
2647
+ #
2648
+ # @option params [Types::ReadSetUploadPartListFilter] :filter
2649
+ # Attributes used to filter for a specific subset of read set part
2650
+ # uploads.
2651
+ #
2652
+ # @return [Types::ListReadSetUploadPartsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2653
+ #
2654
+ # * {Types::ListReadSetUploadPartsResponse#next_token #next_token} => String
2655
+ # * {Types::ListReadSetUploadPartsResponse#parts #parts} => Array&lt;Types::ReadSetUploadPartListItem&gt;
2656
+ #
2657
+ # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2658
+ #
2659
+ # @example Request syntax with placeholder values
2660
+ #
2661
+ # resp = client.list_read_set_upload_parts({
2662
+ # sequence_store_id: "SequenceStoreId", # required
2663
+ # upload_id: "UploadId", # required
2664
+ # part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2
2665
+ # max_results: 1,
2666
+ # next_token: "NextToken",
2667
+ # filter: {
2668
+ # created_after: Time.now,
2669
+ # created_before: Time.now,
2670
+ # },
2671
+ # })
2672
+ #
2673
+ # @example Response structure
2674
+ #
2675
+ # resp.next_token #=> String
2676
+ # resp.parts #=> Array
2677
+ # resp.parts[0].part_number #=> Integer
2678
+ # resp.parts[0].part_size #=> Integer
2679
+ # resp.parts[0].part_source #=> String, one of "SOURCE1", "SOURCE2"
2680
+ # resp.parts[0].checksum #=> String
2681
+ # resp.parts[0].creation_time #=> Time
2682
+ # resp.parts[0].last_updated_time #=> Time
2683
+ #
2684
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetUploadParts AWS API Documentation
2685
+ #
2686
+ # @overload list_read_set_upload_parts(params = {})
2687
+ # @param [Hash] params ({})
2688
+ def list_read_set_upload_parts(params = {}, options = {})
2689
+ req = build_request(:list_read_set_upload_parts, params)
2690
+ req.send_request(options)
2691
+ end
2692
+
2373
2693
  # Retrieves a list of read sets.
2374
2694
  #
2375
- # @option params [Types::ReadSetFilter] :filter
2376
- # A filter to apply to the list.
2695
+ # @option params [required, String] :sequence_store_id
2696
+ # The jobs' sequence store ID.
2377
2697
  #
2378
2698
  # @option params [Integer] :max_results
2379
2699
  # The maximum number of read sets to return in one page of results.
@@ -2382,8 +2702,8 @@ module Aws::Omics
2382
2702
  # Specify the pagination token from a previous request to retrieve the
2383
2703
  # next page of results.
2384
2704
  #
2385
- # @option params [required, String] :sequence_store_id
2386
- # The jobs' sequence store ID.
2705
+ # @option params [Types::ReadSetFilter] :filter
2706
+ # A filter to apply to the list.
2387
2707
  #
2388
2708
  # @return [Types::ListReadSetsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2389
2709
  #
@@ -2395,37 +2715,41 @@ module Aws::Omics
2395
2715
  # @example Request syntax with placeholder values
2396
2716
  #
2397
2717
  # resp = client.list_read_sets({
2718
+ # sequence_store_id: "SequenceStoreId", # required
2719
+ # max_results: 1,
2720
+ # next_token: "NextToken",
2398
2721
  # filter: {
2399
- # created_after: Time.now,
2400
- # created_before: Time.now,
2401
2722
  # name: "ReadSetName",
2723
+ # status: "ARCHIVED", # accepts ARCHIVED, ACTIVATING, ACTIVE, DELETING, DELETED, PROCESSING_UPLOAD, UPLOAD_FAILED
2402
2724
  # reference_arn: "ReferenceArn",
2403
- # status: "ARCHIVED", # accepts ARCHIVED, ACTIVATING, ACTIVE, DELETING, DELETED
2725
+ # created_after: Time.now,
2726
+ # created_before: Time.now,
2727
+ # sample_id: "SampleId",
2728
+ # subject_id: "SubjectId",
2729
+ # generated_from: "GeneratedFrom",
2404
2730
  # },
2405
- # max_results: 1,
2406
- # next_token: "NextToken",
2407
- # sequence_store_id: "SequenceStoreId", # required
2408
2731
  # })
2409
2732
  #
2410
2733
  # @example Response structure
2411
2734
  #
2412
2735
  # resp.next_token #=> String
2413
2736
  # resp.read_sets #=> Array
2414
- # resp.read_sets[0].arn #=> String
2415
- # resp.read_sets[0].creation_time #=> Time
2416
- # resp.read_sets[0].description #=> String
2417
- # resp.read_sets[0].file_type #=> String, one of "FASTQ", "BAM", "CRAM"
2418
2737
  # resp.read_sets[0].id #=> String
2738
+ # resp.read_sets[0].arn #=> String
2739
+ # resp.read_sets[0].sequence_store_id #=> String
2740
+ # resp.read_sets[0].subject_id #=> String
2741
+ # resp.read_sets[0].sample_id #=> String
2742
+ # resp.read_sets[0].status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "PROCESSING_UPLOAD", "UPLOAD_FAILED"
2419
2743
  # resp.read_sets[0].name #=> String
2744
+ # resp.read_sets[0].description #=> String
2420
2745
  # resp.read_sets[0].reference_arn #=> String
2421
- # resp.read_sets[0].sample_id #=> String
2422
- # resp.read_sets[0].sequence_information.alignment #=> String
2423
- # resp.read_sets[0].sequence_information.generated_from #=> String
2424
- # resp.read_sets[0].sequence_information.total_base_count #=> Integer
2746
+ # resp.read_sets[0].file_type #=> String, one of "FASTQ", "BAM", "CRAM"
2425
2747
  # resp.read_sets[0].sequence_information.total_read_count #=> Integer
2426
- # resp.read_sets[0].sequence_store_id #=> String
2427
- # resp.read_sets[0].status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED"
2428
- # resp.read_sets[0].subject_id #=> String
2748
+ # resp.read_sets[0].sequence_information.total_base_count #=> Integer
2749
+ # resp.read_sets[0].sequence_information.generated_from #=> String
2750
+ # resp.read_sets[0].sequence_information.alignment #=> String
2751
+ # resp.read_sets[0].creation_time #=> Time
2752
+ # resp.read_sets[0].status_message #=> String
2429
2753
  #
2430
2754
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSets AWS API Documentation
2431
2755
  #
@@ -2438,9 +2762,6 @@ module Aws::Omics
2438
2762
 
2439
2763
  # Retrieves a list of reference import jobs.
2440
2764
  #
2441
- # @option params [Types::ImportReferenceFilter] :filter
2442
- # A filter to apply to the list.
2443
- #
2444
2765
  # @option params [Integer] :max_results
2445
2766
  # The maximum number of jobs to return in one page of results.
2446
2767
  #
@@ -2451,36 +2772,39 @@ module Aws::Omics
2451
2772
  # @option params [required, String] :reference_store_id
2452
2773
  # The job's reference store ID.
2453
2774
  #
2775
+ # @option params [Types::ImportReferenceFilter] :filter
2776
+ # A filter to apply to the list.
2777
+ #
2454
2778
  # @return [Types::ListReferenceImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2455
2779
  #
2456
- # * {Types::ListReferenceImportJobsResponse#import_jobs #import_jobs} => Array&lt;Types::ImportReferenceJobItem&gt;
2457
2780
  # * {Types::ListReferenceImportJobsResponse#next_token #next_token} => String
2781
+ # * {Types::ListReferenceImportJobsResponse#import_jobs #import_jobs} => Array&lt;Types::ImportReferenceJobItem&gt;
2458
2782
  #
2459
2783
  # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2460
2784
  #
2461
2785
  # @example Request syntax with placeholder values
2462
2786
  #
2463
2787
  # resp = client.list_reference_import_jobs({
2788
+ # max_results: 1,
2789
+ # next_token: "NextToken",
2790
+ # reference_store_id: "ReferenceStoreId", # required
2464
2791
  # filter: {
2792
+ # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2465
2793
  # created_after: Time.now,
2466
2794
  # created_before: Time.now,
2467
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2468
2795
  # },
2469
- # max_results: 1,
2470
- # next_token: "NextToken",
2471
- # reference_store_id: "ReferenceStoreId", # required
2472
2796
  # })
2473
2797
  #
2474
2798
  # @example Response structure
2475
2799
  #
2800
+ # resp.next_token #=> String
2476
2801
  # resp.import_jobs #=> Array
2477
- # resp.import_jobs[0].completion_time #=> Time
2478
- # resp.import_jobs[0].creation_time #=> Time
2479
2802
  # resp.import_jobs[0].id #=> String
2480
2803
  # resp.import_jobs[0].reference_store_id #=> String
2481
2804
  # resp.import_jobs[0].role_arn #=> String
2482
2805
  # resp.import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
2483
- # resp.next_token #=> String
2806
+ # resp.import_jobs[0].creation_time #=> Time
2807
+ # resp.import_jobs[0].completion_time #=> Time
2484
2808
  #
2485
2809
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferenceImportJobs AWS API Documentation
2486
2810
  #
@@ -2493,9 +2817,6 @@ module Aws::Omics
2493
2817
 
2494
2818
  # Retrieves a list of reference stores.
2495
2819
  #
2496
- # @option params [Types::ReferenceStoreFilter] :filter
2497
- # A filter to apply to the list.
2498
- #
2499
2820
  # @option params [Integer] :max_results
2500
2821
  # The maximum number of stores to return in one page of results.
2501
2822
  #
@@ -2503,6 +2824,9 @@ module Aws::Omics
2503
2824
  # Specify the pagination token from a previous request to retrieve the
2504
2825
  # next page of results.
2505
2826
  #
2827
+ # @option params [Types::ReferenceStoreFilter] :filter
2828
+ # A filter to apply to the list.
2829
+ #
2506
2830
  # @return [Types::ListReferenceStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2507
2831
  #
2508
2832
  # * {Types::ListReferenceStoresResponse#next_token #next_token} => String
@@ -2513,13 +2837,13 @@ module Aws::Omics
2513
2837
  # @example Request syntax with placeholder values
2514
2838
  #
2515
2839
  # resp = client.list_reference_stores({
2840
+ # max_results: 1,
2841
+ # next_token: "NextToken",
2516
2842
  # filter: {
2843
+ # name: "ReferenceStoreName",
2517
2844
  # created_after: Time.now,
2518
2845
  # created_before: Time.now,
2519
- # name: "ReferenceStoreName",
2520
2846
  # },
2521
- # max_results: 1,
2522
- # next_token: "NextToken",
2523
2847
  # })
2524
2848
  #
2525
2849
  # @example Response structure
@@ -2527,12 +2851,12 @@ module Aws::Omics
2527
2851
  # resp.next_token #=> String
2528
2852
  # resp.reference_stores #=> Array
2529
2853
  # resp.reference_stores[0].arn #=> String
2530
- # resp.reference_stores[0].creation_time #=> Time
2531
- # resp.reference_stores[0].description #=> String
2532
2854
  # resp.reference_stores[0].id #=> String
2533
2855
  # resp.reference_stores[0].name #=> String
2534
- # resp.reference_stores[0].sse_config.key_arn #=> String
2856
+ # resp.reference_stores[0].description #=> String
2535
2857
  # resp.reference_stores[0].sse_config.type #=> String, one of "KMS"
2858
+ # resp.reference_stores[0].sse_config.key_arn #=> String
2859
+ # resp.reference_stores[0].creation_time #=> Time
2536
2860
  #
2537
2861
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferenceStores AWS API Documentation
2538
2862
  #
@@ -2545,8 +2869,8 @@ module Aws::Omics
2545
2869
 
2546
2870
  # Retrieves a list of references.
2547
2871
  #
2548
- # @option params [Types::ReferenceFilter] :filter
2549
- # A filter to apply to the list.
2872
+ # @option params [required, String] :reference_store_id
2873
+ # The references' reference store ID.
2550
2874
  #
2551
2875
  # @option params [Integer] :max_results
2552
2876
  # The maximum number of references to return in one page of results.
@@ -2555,8 +2879,8 @@ module Aws::Omics
2555
2879
  # Specify the pagination token from a previous request to retrieve the
2556
2880
  # next page of results.
2557
2881
  #
2558
- # @option params [required, String] :reference_store_id
2559
- # The references' reference store ID.
2882
+ # @option params [Types::ReferenceFilter] :filter
2883
+ # A filter to apply to the list.
2560
2884
  #
2561
2885
  # @return [Types::ListReferencesResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2562
2886
  #
@@ -2568,29 +2892,29 @@ module Aws::Omics
2568
2892
  # @example Request syntax with placeholder values
2569
2893
  #
2570
2894
  # resp = client.list_references({
2895
+ # reference_store_id: "ReferenceStoreId", # required
2896
+ # max_results: 1,
2897
+ # next_token: "NextToken",
2571
2898
  # filter: {
2899
+ # name: "ReferenceName",
2900
+ # md5: "Md5",
2572
2901
  # created_after: Time.now,
2573
2902
  # created_before: Time.now,
2574
- # md5: "Md5",
2575
- # name: "ReferenceName",
2576
2903
  # },
2577
- # max_results: 1,
2578
- # next_token: "NextToken",
2579
- # reference_store_id: "ReferenceStoreId", # required
2580
2904
  # })
2581
2905
  #
2582
2906
  # @example Response structure
2583
2907
  #
2584
2908
  # resp.next_token #=> String
2585
2909
  # resp.references #=> Array
2586
- # resp.references[0].arn #=> String
2587
- # resp.references[0].creation_time #=> Time
2588
- # resp.references[0].description #=> String
2589
2910
  # resp.references[0].id #=> String
2590
- # resp.references[0].md5 #=> String
2591
- # resp.references[0].name #=> String
2911
+ # resp.references[0].arn #=> String
2592
2912
  # resp.references[0].reference_store_id #=> String
2913
+ # resp.references[0].md5 #=> String
2593
2914
  # resp.references[0].status #=> String, one of "ACTIVE", "DELETING", "DELETED"
2915
+ # resp.references[0].name #=> String
2916
+ # resp.references[0].description #=> String
2917
+ # resp.references[0].creation_time #=> Time
2594
2918
  # resp.references[0].update_time #=> Time
2595
2919
  #
2596
2920
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferences AWS API Documentation
@@ -2604,9 +2928,6 @@ module Aws::Omics
2604
2928
 
2605
2929
  # Retrieves a list of run groups.
2606
2930
  #
2607
- # @option params [Integer] :max_results
2608
- # The maximum number of run groups to return in one page of results.
2609
- #
2610
2931
  # @option params [String] :name
2611
2932
  # The run groups' name.
2612
2933
  #
@@ -2614,6 +2935,9 @@ module Aws::Omics
2614
2935
  # Specify the pagination token from a previous request to retrieve the
2615
2936
  # next page of results.
2616
2937
  #
2938
+ # @option params [Integer] :max_results
2939
+ # The maximum number of run groups to return in one page of results.
2940
+ #
2617
2941
  # @return [Types::ListRunGroupsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2618
2942
  #
2619
2943
  # * {Types::ListRunGroupsResponse#items #items} => Array&lt;Types::RunGroupListItem&gt;
@@ -2624,21 +2948,22 @@ module Aws::Omics
2624
2948
  # @example Request syntax with placeholder values
2625
2949
  #
2626
2950
  # resp = client.list_run_groups({
2627
- # max_results: 1,
2628
2951
  # name: "RunGroupName",
2629
2952
  # starting_token: "RunGroupListToken",
2953
+ # max_results: 1,
2630
2954
  # })
2631
2955
  #
2632
2956
  # @example Response structure
2633
2957
  #
2634
2958
  # resp.items #=> Array
2635
2959
  # resp.items[0].arn #=> String
2636
- # resp.items[0].creation_time #=> Time
2637
2960
  # resp.items[0].id #=> String
2961
+ # resp.items[0].name #=> String
2638
2962
  # resp.items[0].max_cpus #=> Integer
2639
- # resp.items[0].max_duration #=> Integer
2640
2963
  # resp.items[0].max_runs #=> Integer
2641
- # resp.items[0].name #=> String
2964
+ # resp.items[0].max_duration #=> Integer
2965
+ # resp.items[0].creation_time #=> Time
2966
+ # resp.items[0].max_gpus #=> Integer
2642
2967
  # resp.next_token #=> String
2643
2968
  #
2644
2969
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunGroups AWS API Documentation
@@ -2655,15 +2980,15 @@ module Aws::Omics
2655
2980
  # @option params [required, String] :id
2656
2981
  # The run's ID.
2657
2982
  #
2658
- # @option params [Integer] :max_results
2659
- # The maximum number of run tasks to return in one page of results.
2983
+ # @option params [String] :status
2984
+ # Filter the list by status.
2660
2985
  #
2661
2986
  # @option params [String] :starting_token
2662
2987
  # Specify the pagination token from a previous request to retrieve the
2663
2988
  # next page of results.
2664
2989
  #
2665
- # @option params [String] :status
2666
- # Filter the list by status.
2990
+ # @option params [Integer] :max_results
2991
+ # The maximum number of run tasks to return in one page of results.
2667
2992
  #
2668
2993
  # @return [Types::ListRunTasksResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2669
2994
  #
@@ -2676,22 +3001,23 @@ module Aws::Omics
2676
3001
  #
2677
3002
  # resp = client.list_run_tasks({
2678
3003
  # id: "RunId", # required
2679
- # max_results: 1,
2680
- # starting_token: "TaskListToken",
2681
3004
  # status: "PENDING", # accepts PENDING, STARTING, RUNNING, STOPPING, COMPLETED, CANCELLED, FAILED
3005
+ # starting_token: "TaskListToken",
3006
+ # max_results: 1,
2682
3007
  # })
2683
3008
  #
2684
3009
  # @example Response structure
2685
3010
  #
2686
3011
  # resp.items #=> Array
3012
+ # resp.items[0].task_id #=> String
3013
+ # resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
3014
+ # resp.items[0].name #=> String
2687
3015
  # resp.items[0].cpus #=> Integer
2688
- # resp.items[0].creation_time #=> Time
2689
3016
  # resp.items[0].memory #=> Integer
2690
- # resp.items[0].name #=> String
3017
+ # resp.items[0].creation_time #=> Time
2691
3018
  # resp.items[0].start_time #=> Time
2692
- # resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
2693
3019
  # resp.items[0].stop_time #=> Time
2694
- # resp.items[0].task_id #=> String
3020
+ # resp.items[0].gpus #=> Integer
2695
3021
  # resp.next_token #=> String
2696
3022
  #
2697
3023
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunTasks AWS API Documentation
@@ -2705,9 +3031,6 @@ module Aws::Omics
2705
3031
 
2706
3032
  # Retrieves a list of runs.
2707
3033
  #
2708
- # @option params [Integer] :max_results
2709
- # The maximum number of runs to return in one page of results.
2710
- #
2711
3034
  # @option params [String] :name
2712
3035
  # Filter the list by run name.
2713
3036
  #
@@ -2718,6 +3041,12 @@ module Aws::Omics
2718
3041
  # Specify the pagination token from a previous request to retrieve the
2719
3042
  # next page of results.
2720
3043
  #
3044
+ # @option params [Integer] :max_results
3045
+ # The maximum number of runs to return in one page of results.
3046
+ #
3047
+ # @option params [String] :status
3048
+ # The status of a run.
3049
+ #
2721
3050
  # @return [Types::ListRunsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2722
3051
  #
2723
3052
  # * {Types::ListRunsResponse#items #items} => Array&lt;Types::RunListItem&gt;
@@ -2728,25 +3057,26 @@ module Aws::Omics
2728
3057
  # @example Request syntax with placeholder values
2729
3058
  #
2730
3059
  # resp = client.list_runs({
2731
- # max_results: 1,
2732
3060
  # name: "RunName",
2733
3061
  # run_group_id: "RunGroupId",
2734
3062
  # starting_token: "RunListToken",
3063
+ # max_results: 1,
3064
+ # status: "PENDING", # accepts PENDING, STARTING, RUNNING, STOPPING, COMPLETED, DELETED, CANCELLED, FAILED
2735
3065
  # })
2736
3066
  #
2737
3067
  # @example Response structure
2738
3068
  #
2739
3069
  # resp.items #=> Array
2740
3070
  # resp.items[0].arn #=> String
2741
- # resp.items[0].creation_time #=> Time
2742
3071
  # resp.items[0].id #=> String
3072
+ # resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
3073
+ # resp.items[0].workflow_id #=> String
2743
3074
  # resp.items[0].name #=> String
2744
3075
  # resp.items[0].priority #=> Integer
3076
+ # resp.items[0].storage_capacity #=> Integer
3077
+ # resp.items[0].creation_time #=> Time
2745
3078
  # resp.items[0].start_time #=> Time
2746
- # resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
2747
3079
  # resp.items[0].stop_time #=> Time
2748
- # resp.items[0].storage_capacity #=> Integer
2749
- # resp.items[0].workflow_id #=> String
2750
3080
  # resp.next_token #=> String
2751
3081
  #
2752
3082
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRuns AWS API Documentation
@@ -2760,9 +3090,6 @@ module Aws::Omics
2760
3090
 
2761
3091
  # Retrieves a list of sequence stores.
2762
3092
  #
2763
- # @option params [Types::SequenceStoreFilter] :filter
2764
- # A filter to apply to the list.
2765
- #
2766
3093
  # @option params [Integer] :max_results
2767
3094
  # The maximum number of stores to return in one page of results.
2768
3095
  #
@@ -2770,6 +3097,9 @@ module Aws::Omics
2770
3097
  # Specify the pagination token from a previous request to retrieve the
2771
3098
  # next page of results.
2772
3099
  #
3100
+ # @option params [Types::SequenceStoreFilter] :filter
3101
+ # A filter to apply to the list.
3102
+ #
2773
3103
  # @return [Types::ListSequenceStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2774
3104
  #
2775
3105
  # * {Types::ListSequenceStoresResponse#next_token #next_token} => String
@@ -2780,13 +3110,13 @@ module Aws::Omics
2780
3110
  # @example Request syntax with placeholder values
2781
3111
  #
2782
3112
  # resp = client.list_sequence_stores({
3113
+ # max_results: 1,
3114
+ # next_token: "NextToken",
2783
3115
  # filter: {
3116
+ # name: "SequenceStoreName",
2784
3117
  # created_after: Time.now,
2785
3118
  # created_before: Time.now,
2786
- # name: "SequenceStoreName",
2787
3119
  # },
2788
- # max_results: 1,
2789
- # next_token: "NextToken",
2790
3120
  # })
2791
3121
  #
2792
3122
  # @example Response structure
@@ -2794,12 +3124,13 @@ module Aws::Omics
2794
3124
  # resp.next_token #=> String
2795
3125
  # resp.sequence_stores #=> Array
2796
3126
  # resp.sequence_stores[0].arn #=> String
2797
- # resp.sequence_stores[0].creation_time #=> Time
2798
- # resp.sequence_stores[0].description #=> String
2799
3127
  # resp.sequence_stores[0].id #=> String
2800
3128
  # resp.sequence_stores[0].name #=> String
2801
- # resp.sequence_stores[0].sse_config.key_arn #=> String
3129
+ # resp.sequence_stores[0].description #=> String
2802
3130
  # resp.sequence_stores[0].sse_config.type #=> String, one of "KMS"
3131
+ # resp.sequence_stores[0].sse_config.key_arn #=> String
3132
+ # resp.sequence_stores[0].creation_time #=> Time
3133
+ # resp.sequence_stores[0].fallback_location #=> String
2803
3134
  #
2804
3135
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListSequenceStores AWS API Documentation
2805
3136
  #
@@ -2841,50 +3172,52 @@ module Aws::Omics
2841
3172
 
2842
3173
  # Retrieves a list of variant import jobs.
2843
3174
  #
2844
- # @option params [Types::ListVariantImportJobsFilter] :filter
2845
- # A filter to apply to the list.
3175
+ # @option params [Integer] :max_results
3176
+ # The maximum number of import jobs to return in one page of results.
2846
3177
  #
2847
3178
  # @option params [Array<String>] :ids
2848
3179
  # A list of job IDs.
2849
3180
  #
2850
- # @option params [Integer] :max_results
2851
- # The maximum number of import jobs to return in one page of results.
2852
- #
2853
3181
  # @option params [String] :next_token
2854
3182
  # Specify the pagination token from a previous request to retrieve the
2855
3183
  # next page of results.
2856
3184
  #
3185
+ # @option params [Types::ListVariantImportJobsFilter] :filter
3186
+ # A filter to apply to the list.
3187
+ #
2857
3188
  # @return [Types::ListVariantImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2858
3189
  #
2859
- # * {Types::ListVariantImportJobsResponse#next_token #next_token} => String
2860
3190
  # * {Types::ListVariantImportJobsResponse#variant_import_jobs #variant_import_jobs} => Array&lt;Types::VariantImportJobItem&gt;
3191
+ # * {Types::ListVariantImportJobsResponse#next_token #next_token} => String
2861
3192
  #
2862
3193
  # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2863
3194
  #
2864
3195
  # @example Request syntax with placeholder values
2865
3196
  #
2866
3197
  # resp = client.list_variant_import_jobs({
3198
+ # max_results: 1,
3199
+ # ids: ["ResourceIdentifier"],
3200
+ # next_token: "ListVariantImportJobsRequestNextTokenString",
2867
3201
  # filter: {
2868
3202
  # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED, COMPLETED_WITH_FAILURES
2869
3203
  # store_name: "String",
2870
3204
  # },
2871
- # ids: ["ResourceIdentifier"],
2872
- # max_results: 1,
2873
- # next_token: "ListVariantImportJobsRequestNextTokenString",
2874
3205
  # })
2875
3206
  #
2876
3207
  # @example Response structure
2877
3208
  #
2878
- # resp.next_token #=> String
2879
3209
  # resp.variant_import_jobs #=> Array
2880
- # resp.variant_import_jobs[0].completion_time #=> Time
2881
- # resp.variant_import_jobs[0].creation_time #=> Time
2882
- # resp.variant_import_jobs[0].destination_name #=> String
2883
3210
  # resp.variant_import_jobs[0].id #=> String
3211
+ # resp.variant_import_jobs[0].destination_name #=> String
2884
3212
  # resp.variant_import_jobs[0].role_arn #=> String
2885
- # resp.variant_import_jobs[0].run_left_normalization #=> Boolean
2886
3213
  # resp.variant_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
3214
+ # resp.variant_import_jobs[0].creation_time #=> Time
2887
3215
  # resp.variant_import_jobs[0].update_time #=> Time
3216
+ # resp.variant_import_jobs[0].completion_time #=> Time
3217
+ # resp.variant_import_jobs[0].run_left_normalization #=> Boolean
3218
+ # resp.variant_import_jobs[0].annotation_fields #=> Hash
3219
+ # resp.variant_import_jobs[0].annotation_fields["AnnotationFieldMapKeyString"] #=> String
3220
+ # resp.next_token #=> String
2888
3221
  #
2889
3222
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListVariantImportJobs AWS API Documentation
2890
3223
  #
@@ -2897,53 +3230,53 @@ module Aws::Omics
2897
3230
 
2898
3231
  # Retrieves a list of variant stores.
2899
3232
  #
2900
- # @option params [Types::ListVariantStoresFilter] :filter
2901
- # A filter to apply to the list.
3233
+ # @option params [Integer] :max_results
3234
+ # The maximum number of stores to return in one page of results.
2902
3235
  #
2903
3236
  # @option params [Array<String>] :ids
2904
3237
  # A list of store IDs.
2905
3238
  #
2906
- # @option params [Integer] :max_results
2907
- # The maximum number of stores to return in one page of results.
2908
- #
2909
3239
  # @option params [String] :next_token
2910
3240
  # Specify the pagination token from a previous request to retrieve the
2911
3241
  # next page of results.
2912
3242
  #
3243
+ # @option params [Types::ListVariantStoresFilter] :filter
3244
+ # A filter to apply to the list.
3245
+ #
2913
3246
  # @return [Types::ListVariantStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2914
3247
  #
2915
- # * {Types::ListVariantStoresResponse#next_token #next_token} => String
2916
3248
  # * {Types::ListVariantStoresResponse#variant_stores #variant_stores} => Array&lt;Types::VariantStoreItem&gt;
3249
+ # * {Types::ListVariantStoresResponse#next_token #next_token} => String
2917
3250
  #
2918
3251
  # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2919
3252
  #
2920
3253
  # @example Request syntax with placeholder values
2921
3254
  #
2922
3255
  # resp = client.list_variant_stores({
3256
+ # max_results: 1,
3257
+ # ids: ["ResourceIdentifier"],
3258
+ # next_token: "ListVariantStoresRequestNextTokenString",
2923
3259
  # filter: {
2924
3260
  # status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
2925
3261
  # },
2926
- # ids: ["ResourceIdentifier"],
2927
- # max_results: 1,
2928
- # next_token: "ListVariantStoresRequestNextTokenString",
2929
3262
  # })
2930
3263
  #
2931
3264
  # @example Response structure
2932
3265
  #
2933
- # resp.next_token #=> String
2934
3266
  # resp.variant_stores #=> Array
2935
- # resp.variant_stores[0].creation_time #=> Time
2936
- # resp.variant_stores[0].description #=> String
2937
3267
  # resp.variant_stores[0].id #=> String
2938
- # resp.variant_stores[0].name #=> String
2939
3268
  # resp.variant_stores[0].reference.reference_arn #=> String
2940
- # resp.variant_stores[0].sse_config.key_arn #=> String
2941
- # resp.variant_stores[0].sse_config.type #=> String, one of "KMS"
2942
3269
  # resp.variant_stores[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
2943
- # resp.variant_stores[0].status_message #=> String
2944
3270
  # resp.variant_stores[0].store_arn #=> String
2945
- # resp.variant_stores[0].store_size_bytes #=> Integer
3271
+ # resp.variant_stores[0].name #=> String
3272
+ # resp.variant_stores[0].description #=> String
3273
+ # resp.variant_stores[0].sse_config.type #=> String, one of "KMS"
3274
+ # resp.variant_stores[0].sse_config.key_arn #=> String
3275
+ # resp.variant_stores[0].creation_time #=> Time
2946
3276
  # resp.variant_stores[0].update_time #=> Time
3277
+ # resp.variant_stores[0].status_message #=> String
3278
+ # resp.variant_stores[0].store_size_bytes #=> Integer
3279
+ # resp.next_token #=> String
2947
3280
  #
2948
3281
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListVariantStores AWS API Documentation
2949
3282
  #
@@ -2956,8 +3289,8 @@ module Aws::Omics
2956
3289
 
2957
3290
  # Retrieves a list of workflows.
2958
3291
  #
2959
- # @option params [Integer] :max_results
2960
- # The maximum number of workflows to return in one page of results.
3292
+ # @option params [String] :type
3293
+ # The workflows' type.
2961
3294
  #
2962
3295
  # @option params [String] :name
2963
3296
  # The workflows' name.
@@ -2966,8 +3299,8 @@ module Aws::Omics
2966
3299
  # Specify the pagination token from a previous request to retrieve the
2967
3300
  # next page of results.
2968
3301
  #
2969
- # @option params [String] :type
2970
- # The workflows' type.
3302
+ # @option params [Integer] :max_results
3303
+ # The maximum number of workflows to return in one page of results.
2971
3304
  #
2972
3305
  # @return [Types::ListWorkflowsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2973
3306
  #
@@ -2979,22 +3312,24 @@ module Aws::Omics
2979
3312
  # @example Request syntax with placeholder values
2980
3313
  #
2981
3314
  # resp = client.list_workflows({
2982
- # max_results: 1,
3315
+ # type: "PRIVATE", # accepts PRIVATE, READY2RUN
2983
3316
  # name: "WorkflowName",
2984
3317
  # starting_token: "WorkflowListToken",
2985
- # type: "PRIVATE", # accepts PRIVATE
3318
+ # max_results: 1,
2986
3319
  # })
2987
3320
  #
2988
3321
  # @example Response structure
2989
3322
  #
2990
3323
  # resp.items #=> Array
2991
3324
  # resp.items[0].arn #=> String
2992
- # resp.items[0].creation_time #=> Time
2993
- # resp.items[0].digest #=> String
2994
3325
  # resp.items[0].id #=> String
2995
3326
  # resp.items[0].name #=> String
2996
- # resp.items[0].status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
2997
- # resp.items[0].type #=> String, one of "PRIVATE"
3327
+ # resp.items[0].status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
3328
+ # resp.items[0].type #=> String, one of "PRIVATE", "READY2RUN"
3329
+ # resp.items[0].digest #=> String
3330
+ # resp.items[0].creation_time #=> Time
3331
+ # resp.items[0].metadata #=> Hash
3332
+ # resp.items[0].metadata["WorkflowMetadataKey"] #=> String
2998
3333
  # resp.next_token #=> String
2999
3334
  #
3000
3335
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListWorkflows AWS API Documentation
@@ -3011,18 +3346,21 @@ module Aws::Omics
3011
3346
  # @option params [required, String] :destination_name
3012
3347
  # A destination annotation store for the job.
3013
3348
  #
3014
- # @option params [Types::FormatOptions] :format_options
3015
- # Formatting options for the annotation file.
3349
+ # @option params [required, String] :role_arn
3350
+ # A service role for the job.
3016
3351
  #
3017
3352
  # @option params [required, Array<Types::AnnotationImportItemSource>] :items
3018
3353
  # Items to import.
3019
3354
  #
3020
- # @option params [required, String] :role_arn
3021
- # A service role for the job.
3355
+ # @option params [Types::FormatOptions] :format_options
3356
+ # Formatting options for the annotation file.
3022
3357
  #
3023
3358
  # @option params [Boolean] :run_left_normalization
3024
3359
  # The job's left normalization setting.
3025
3360
  #
3361
+ # @option params [Hash<String,String>] :annotation_fields
3362
+ # The annotation schema generated by the parsed annotation data.
3363
+ #
3026
3364
  # @return [Types::StartAnnotationImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3027
3365
  #
3028
3366
  # * {Types::StartAnnotationImportResponse#job_id #job_id} => String
@@ -3031,32 +3369,35 @@ module Aws::Omics
3031
3369
  #
3032
3370
  # resp = client.start_annotation_import_job({
3033
3371
  # destination_name: "StoreName", # required
3372
+ # role_arn: "Arn", # required
3373
+ # items: [ # required
3374
+ # {
3375
+ # source: "S3Uri", # required
3376
+ # },
3377
+ # ],
3034
3378
  # format_options: {
3035
3379
  # tsv_options: {
3036
3380
  # read_options: {
3037
- # comment: "CommentChar",
3381
+ # sep: "Separator",
3038
3382
  # encoding: "Encoding",
3383
+ # quote: "Quote",
3384
+ # quote_all: false,
3039
3385
  # escape: "EscapeChar",
3040
3386
  # escape_quotes: false,
3387
+ # comment: "CommentChar",
3041
3388
  # header: false,
3042
3389
  # line_sep: "LineSep",
3043
- # quote: "Quote",
3044
- # quote_all: false,
3045
- # sep: "Separator",
3046
3390
  # },
3047
3391
  # },
3048
3392
  # vcf_options: {
3049
- # ignore_filter_field: false,
3050
3393
  # ignore_qual_field: false,
3394
+ # ignore_filter_field: false,
3051
3395
  # },
3052
3396
  # },
3053
- # items: [ # required
3054
- # {
3055
- # source: "S3Uri", # required
3056
- # },
3057
- # ],
3058
- # role_arn: "Arn", # required
3059
3397
  # run_left_normalization: false,
3398
+ # annotation_fields: {
3399
+ # "AnnotationFieldMapKeyString" => "AnnotationFieldMapValueString",
3400
+ # },
3060
3401
  # })
3061
3402
  #
3062
3403
  # @example Response structure
@@ -3075,28 +3416,28 @@ module Aws::Omics
3075
3416
  # Activates an archived read set. To reduce storage charges, Amazon
3076
3417
  # Omics archives unused read sets after 30 days.
3077
3418
  #
3078
- # @option params [String] :client_token
3079
- # To ensure that jobs don't run multiple times, specify a unique token
3080
- # for each job.
3081
- #
3082
3419
  # @option params [required, String] :sequence_store_id
3083
3420
  # The read set's sequence store ID.
3084
3421
  #
3422
+ # @option params [String] :client_token
3423
+ # To ensure that jobs don't run multiple times, specify a unique token
3424
+ # for each job.
3425
+ #
3085
3426
  # @option params [required, Array<Types::StartReadSetActivationJobSourceItem>] :sources
3086
3427
  # The job's source files.
3087
3428
  #
3088
3429
  # @return [Types::StartReadSetActivationJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3089
3430
  #
3090
- # * {Types::StartReadSetActivationJobResponse#creation_time #creation_time} => Time
3091
3431
  # * {Types::StartReadSetActivationJobResponse#id #id} => String
3092
3432
  # * {Types::StartReadSetActivationJobResponse#sequence_store_id #sequence_store_id} => String
3093
3433
  # * {Types::StartReadSetActivationJobResponse#status #status} => String
3434
+ # * {Types::StartReadSetActivationJobResponse#creation_time #creation_time} => Time
3094
3435
  #
3095
3436
  # @example Request syntax with placeholder values
3096
3437
  #
3097
3438
  # resp = client.start_read_set_activation_job({
3098
- # client_token: "ClientToken",
3099
3439
  # sequence_store_id: "SequenceStoreId", # required
3440
+ # client_token: "ClientToken",
3100
3441
  # sources: [ # required
3101
3442
  # {
3102
3443
  # read_set_id: "ReadSetId", # required
@@ -3106,10 +3447,10 @@ module Aws::Omics
3106
3447
  #
3107
3448
  # @example Response structure
3108
3449
  #
3109
- # resp.creation_time #=> Time
3110
3450
  # resp.id #=> String
3111
3451
  # resp.sequence_store_id #=> String
3112
3452
  # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
3453
+ # resp.creation_time #=> Time
3113
3454
  #
3114
3455
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetActivationJob AWS API Documentation
3115
3456
  #
@@ -3122,9 +3463,8 @@ module Aws::Omics
3122
3463
 
3123
3464
  # Exports a read set to Amazon S3.
3124
3465
  #
3125
- # @option params [String] :client_token
3126
- # To ensure that jobs don't run multiple times, specify a unique token
3127
- # for each job.
3466
+ # @option params [required, String] :sequence_store_id
3467
+ # The read set's sequence store ID.
3128
3468
  #
3129
3469
  # @option params [required, String] :destination
3130
3470
  # A location for exported files in Amazon S3.
@@ -3132,27 +3472,28 @@ module Aws::Omics
3132
3472
  # @option params [required, String] :role_arn
3133
3473
  # A service role for the job.
3134
3474
  #
3135
- # @option params [required, String] :sequence_store_id
3136
- # The read set's sequence store ID.
3475
+ # @option params [String] :client_token
3476
+ # To ensure that jobs don't run multiple times, specify a unique token
3477
+ # for each job.
3137
3478
  #
3138
3479
  # @option params [required, Array<Types::ExportReadSet>] :sources
3139
3480
  # The job's source files.
3140
3481
  #
3141
3482
  # @return [Types::StartReadSetExportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3142
3483
  #
3143
- # * {Types::StartReadSetExportJobResponse#creation_time #creation_time} => Time
3144
- # * {Types::StartReadSetExportJobResponse#destination #destination} => String
3145
3484
  # * {Types::StartReadSetExportJobResponse#id #id} => String
3146
3485
  # * {Types::StartReadSetExportJobResponse#sequence_store_id #sequence_store_id} => String
3486
+ # * {Types::StartReadSetExportJobResponse#destination #destination} => String
3147
3487
  # * {Types::StartReadSetExportJobResponse#status #status} => String
3488
+ # * {Types::StartReadSetExportJobResponse#creation_time #creation_time} => Time
3148
3489
  #
3149
3490
  # @example Request syntax with placeholder values
3150
3491
  #
3151
3492
  # resp = client.start_read_set_export_job({
3152
- # client_token: "ClientToken",
3493
+ # sequence_store_id: "SequenceStoreId", # required
3153
3494
  # destination: "S3Destination", # required
3154
3495
  # role_arn: "RoleArn", # required
3155
- # sequence_store_id: "SequenceStoreId", # required
3496
+ # client_token: "ClientToken",
3156
3497
  # sources: [ # required
3157
3498
  # {
3158
3499
  # read_set_id: "ReadSetId", # required
@@ -3162,11 +3503,11 @@ module Aws::Omics
3162
3503
  #
3163
3504
  # @example Response structure
3164
3505
  #
3165
- # resp.creation_time #=> Time
3166
- # resp.destination #=> String
3167
3506
  # resp.id #=> String
3168
3507
  # resp.sequence_store_id #=> String
3508
+ # resp.destination #=> String
3169
3509
  # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
3510
+ # resp.creation_time #=> Time
3170
3511
  #
3171
3512
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetExportJob AWS API Documentation
3172
3513
  #
@@ -3179,46 +3520,46 @@ module Aws::Omics
3179
3520
 
3180
3521
  # Starts a read set import job.
3181
3522
  #
3182
- # @option params [String] :client_token
3183
- # To ensure that jobs don't run multiple times, specify a unique token
3184
- # for each job.
3523
+ # @option params [required, String] :sequence_store_id
3524
+ # The read set's sequence store ID.
3185
3525
  #
3186
3526
  # @option params [required, String] :role_arn
3187
3527
  # A service role for the job.
3188
3528
  #
3189
- # @option params [required, String] :sequence_store_id
3190
- # The read set's sequence store ID.
3529
+ # @option params [String] :client_token
3530
+ # To ensure that jobs don't run multiple times, specify a unique token
3531
+ # for each job.
3191
3532
  #
3192
3533
  # @option params [required, Array<Types::StartReadSetImportJobSourceItem>] :sources
3193
3534
  # The job's source files.
3194
3535
  #
3195
3536
  # @return [Types::StartReadSetImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3196
3537
  #
3197
- # * {Types::StartReadSetImportJobResponse#creation_time #creation_time} => Time
3198
3538
  # * {Types::StartReadSetImportJobResponse#id #id} => String
3199
- # * {Types::StartReadSetImportJobResponse#role_arn #role_arn} => String
3200
3539
  # * {Types::StartReadSetImportJobResponse#sequence_store_id #sequence_store_id} => String
3540
+ # * {Types::StartReadSetImportJobResponse#role_arn #role_arn} => String
3201
3541
  # * {Types::StartReadSetImportJobResponse#status #status} => String
3542
+ # * {Types::StartReadSetImportJobResponse#creation_time #creation_time} => Time
3202
3543
  #
3203
3544
  # @example Request syntax with placeholder values
3204
3545
  #
3205
3546
  # resp = client.start_read_set_import_job({
3206
- # client_token: "ClientToken",
3207
- # role_arn: "RoleArn", # required
3208
3547
  # sequence_store_id: "SequenceStoreId", # required
3548
+ # role_arn: "RoleArn", # required
3549
+ # client_token: "ClientToken",
3209
3550
  # sources: [ # required
3210
3551
  # {
3211
- # description: "ReadSetDescription",
3212
- # generated_from: "GeneratedFrom",
3213
- # name: "ReadSetName",
3214
- # reference_arn: "ReferenceArn", # required
3215
- # sample_id: "SampleId", # required
3216
- # source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
3217
3552
  # source_files: { # required
3218
3553
  # source1: "S3Uri", # required
3219
3554
  # source2: "S3Uri",
3220
3555
  # },
3556
+ # source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
3221
3557
  # subject_id: "SubjectId", # required
3558
+ # sample_id: "SampleId", # required
3559
+ # generated_from: "GeneratedFrom",
3560
+ # reference_arn: "ReferenceArn", # required
3561
+ # name: "ReadSetName",
3562
+ # description: "ReadSetDescription",
3222
3563
  # tags: {
3223
3564
  # "TagKey" => "TagValue",
3224
3565
  # },
@@ -3228,11 +3569,11 @@ module Aws::Omics
3228
3569
  #
3229
3570
  # @example Response structure
3230
3571
  #
3231
- # resp.creation_time #=> Time
3232
3572
  # resp.id #=> String
3233
- # resp.role_arn #=> String
3234
3573
  # resp.sequence_store_id #=> String
3574
+ # resp.role_arn #=> String
3235
3575
  # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
3576
+ # resp.creation_time #=> Time
3236
3577
  #
3237
3578
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetImportJob AWS API Documentation
3238
3579
  #
@@ -3245,38 +3586,38 @@ module Aws::Omics
3245
3586
 
3246
3587
  # Starts a reference import job.
3247
3588
  #
3248
- # @option params [String] :client_token
3249
- # To ensure that jobs don't run multiple times, specify a unique token
3250
- # for each job.
3251
- #
3252
3589
  # @option params [required, String] :reference_store_id
3253
3590
  # The job's reference store ID.
3254
3591
  #
3255
3592
  # @option params [required, String] :role_arn
3256
3593
  # A service role for the job.
3257
3594
  #
3595
+ # @option params [String] :client_token
3596
+ # To ensure that jobs don't run multiple times, specify a unique token
3597
+ # for each job.
3598
+ #
3258
3599
  # @option params [required, Array<Types::StartReferenceImportJobSourceItem>] :sources
3259
3600
  # The job's source files.
3260
3601
  #
3261
3602
  # @return [Types::StartReferenceImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3262
3603
  #
3263
- # * {Types::StartReferenceImportJobResponse#creation_time #creation_time} => Time
3264
3604
  # * {Types::StartReferenceImportJobResponse#id #id} => String
3265
3605
  # * {Types::StartReferenceImportJobResponse#reference_store_id #reference_store_id} => String
3266
3606
  # * {Types::StartReferenceImportJobResponse#role_arn #role_arn} => String
3267
3607
  # * {Types::StartReferenceImportJobResponse#status #status} => String
3608
+ # * {Types::StartReferenceImportJobResponse#creation_time #creation_time} => Time
3268
3609
  #
3269
3610
  # @example Request syntax with placeholder values
3270
3611
  #
3271
3612
  # resp = client.start_reference_import_job({
3272
- # client_token: "ClientToken",
3273
3613
  # reference_store_id: "ReferenceStoreId", # required
3274
3614
  # role_arn: "RoleArn", # required
3615
+ # client_token: "ClientToken",
3275
3616
  # sources: [ # required
3276
3617
  # {
3277
- # description: "ReferenceDescription",
3278
- # name: "ReferenceName", # required
3279
3618
  # source_file: "S3Uri", # required
3619
+ # name: "ReferenceName", # required
3620
+ # description: "ReferenceDescription",
3280
3621
  # tags: {
3281
3622
  # "TagKey" => "TagValue",
3282
3623
  # },
@@ -3286,11 +3627,11 @@ module Aws::Omics
3286
3627
  #
3287
3628
  # @example Response structure
3288
3629
  #
3289
- # resp.creation_time #=> Time
3290
3630
  # resp.id #=> String
3291
3631
  # resp.reference_store_id #=> String
3292
3632
  # resp.role_arn #=> String
3293
3633
  # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
3634
+ # resp.creation_time #=> Time
3294
3635
  #
3295
3636
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReferenceImportJob AWS API Documentation
3296
3637
  #
@@ -3303,14 +3644,26 @@ module Aws::Omics
3303
3644
 
3304
3645
  # Starts a run.
3305
3646
  #
3306
- # @option params [String] :log_level
3307
- # A log level for the run.
3647
+ # @option params [String] :workflow_id
3648
+ # The run's workflow ID.
3649
+ #
3650
+ # @option params [String] :workflow_type
3651
+ # The run's workflows type.
3652
+ #
3653
+ # @option params [String] :run_id
3654
+ # The run's ID.
3655
+ #
3656
+ # @option params [required, String] :role_arn
3657
+ # A service role for the run.
3308
3658
  #
3309
3659
  # @option params [String] :name
3310
3660
  # A name for the run.
3311
3661
  #
3312
- # @option params [String] :output_uri
3313
- # An output URI for the run.
3662
+ # @option params [String] :run_group_id
3663
+ # The run's group ID.
3664
+ #
3665
+ # @option params [Integer] :priority
3666
+ # A priority for the run.
3314
3667
  #
3315
3668
  # @option params [Hash,Array,String,Numeric,Boolean] :parameters
3316
3669
  # Parameters for the run.
@@ -3320,36 +3673,24 @@ module Aws::Omics
3320
3673
  # serialized using the same format as its surroundings and requires no
3321
3674
  # additional encoding or escaping.
3322
3675
  #
3323
- # @option params [Integer] :priority
3324
- # A priority for the run.
3325
- #
3326
- # @option params [required, String] :request_id
3327
- # To ensure that requests don't run multiple times, specify a unique ID
3328
- # for each request.
3329
- #
3330
- # **A suitable default value is auto-generated.** You should normally
3331
- # not need to pass this option.**
3332
- #
3333
- # @option params [required, String] :role_arn
3334
- # A service role for the run.
3335
- #
3336
- # @option params [String] :run_group_id
3337
- # The run's group ID.
3338
- #
3339
- # @option params [String] :run_id
3340
- # The run's ID.
3341
- #
3342
3676
  # @option params [Integer] :storage_capacity
3343
3677
  # A storage capacity for the run in gigabytes.
3344
3678
  #
3679
+ # @option params [String] :output_uri
3680
+ # An output URI for the run.
3681
+ #
3682
+ # @option params [String] :log_level
3683
+ # A log level for the run.
3684
+ #
3345
3685
  # @option params [Hash<String,String>] :tags
3346
3686
  # Tags for the run.
3347
3687
  #
3348
- # @option params [String] :workflow_id
3349
- # The run's workflow ID.
3688
+ # @option params [required, String] :request_id
3689
+ # To ensure that requests don't run multiple times, specify a unique ID
3690
+ # for each request.
3350
3691
  #
3351
- # @option params [String] :workflow_type
3352
- # The run's workflows type.
3692
+ # **A suitable default value is auto-generated.** You should normally
3693
+ # not need to pass this option.**
3353
3694
  #
3354
3695
  # @return [Types::StartRunResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3355
3696
  #
@@ -3361,22 +3702,22 @@ module Aws::Omics
3361
3702
  # @example Request syntax with placeholder values
3362
3703
  #
3363
3704
  # resp = client.start_run({
3364
- # log_level: "OFF", # accepts OFF, FATAL, ERROR, ALL
3705
+ # workflow_id: "WorkflowId",
3706
+ # workflow_type: "PRIVATE", # accepts PRIVATE, READY2RUN
3707
+ # run_id: "RunId",
3708
+ # role_arn: "RunRoleArn", # required
3365
3709
  # name: "RunName",
3366
- # output_uri: "RunOutputUri",
3710
+ # run_group_id: "RunGroupId",
3711
+ # priority: 1,
3367
3712
  # parameters: {
3368
3713
  # },
3369
- # priority: 1,
3370
- # request_id: "RunRequestId", # required
3371
- # role_arn: "RunRoleArn", # required
3372
- # run_group_id: "RunGroupId",
3373
- # run_id: "RunId",
3374
3714
  # storage_capacity: 1,
3715
+ # output_uri: "RunOutputUri",
3716
+ # log_level: "OFF", # accepts OFF, FATAL, ERROR, ALL
3375
3717
  # tags: {
3376
3718
  # "TagKey" => "TagValue",
3377
3719
  # },
3378
- # workflow_id: "WorkflowId",
3379
- # workflow_type: "PRIVATE", # accepts PRIVATE
3720
+ # request_id: "RunRequestId", # required
3380
3721
  # })
3381
3722
  #
3382
3723
  # @example Response structure
@@ -3401,15 +3742,18 @@ module Aws::Omics
3401
3742
  # @option params [required, String] :destination_name
3402
3743
  # The destination variant store for the job.
3403
3744
  #
3404
- # @option params [required, Array<Types::VariantImportItemSource>] :items
3405
- # Items to import.
3406
- #
3407
3745
  # @option params [required, String] :role_arn
3408
3746
  # A service role for the job.
3409
3747
  #
3748
+ # @option params [required, Array<Types::VariantImportItemSource>] :items
3749
+ # Items to import.
3750
+ #
3410
3751
  # @option params [Boolean] :run_left_normalization
3411
3752
  # The job's left normalization setting.
3412
3753
  #
3754
+ # @option params [Hash<String,String>] :annotation_fields
3755
+ # The annotation schema generated by the parsed annotation data.
3756
+ #
3413
3757
  # @return [Types::StartVariantImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3414
3758
  #
3415
3759
  # * {Types::StartVariantImportResponse#job_id #job_id} => String
@@ -3418,13 +3762,16 @@ module Aws::Omics
3418
3762
  #
3419
3763
  # resp = client.start_variant_import_job({
3420
3764
  # destination_name: "StoreName", # required
3765
+ # role_arn: "Arn", # required
3421
3766
  # items: [ # required
3422
3767
  # {
3423
3768
  # source: "S3Uri", # required
3424
3769
  # },
3425
3770
  # ],
3426
- # role_arn: "Arn", # required
3427
3771
  # run_left_normalization: false,
3772
+ # annotation_fields: {
3773
+ # "AnnotationFieldMapKeyString" => "AnnotationFieldMapValueString",
3774
+ # },
3428
3775
  # })
3429
3776
  #
3430
3777
  # @example Response structure
@@ -3496,47 +3843,47 @@ module Aws::Omics
3496
3843
 
3497
3844
  # Updates an annotation store.
3498
3845
  #
3499
- # @option params [String] :description
3500
- # A description for the store.
3501
- #
3502
3846
  # @option params [required, String] :name
3503
3847
  # A name for the store.
3504
3848
  #
3849
+ # @option params [String] :description
3850
+ # A description for the store.
3851
+ #
3505
3852
  # @return [Types::UpdateAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3506
3853
  #
3507
- # * {Types::UpdateAnnotationStoreResponse#creation_time #creation_time} => Time
3508
- # * {Types::UpdateAnnotationStoreResponse#description #description} => String
3509
3854
  # * {Types::UpdateAnnotationStoreResponse#id #id} => String
3510
- # * {Types::UpdateAnnotationStoreResponse#name #name} => String
3511
3855
  # * {Types::UpdateAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
3512
3856
  # * {Types::UpdateAnnotationStoreResponse#status #status} => String
3513
- # * {Types::UpdateAnnotationStoreResponse#store_format #store_format} => String
3514
- # * {Types::UpdateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
3857
+ # * {Types::UpdateAnnotationStoreResponse#name #name} => String
3858
+ # * {Types::UpdateAnnotationStoreResponse#description #description} => String
3859
+ # * {Types::UpdateAnnotationStoreResponse#creation_time #creation_time} => Time
3515
3860
  # * {Types::UpdateAnnotationStoreResponse#update_time #update_time} => Time
3861
+ # * {Types::UpdateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
3862
+ # * {Types::UpdateAnnotationStoreResponse#store_format #store_format} => String
3516
3863
  #
3517
3864
  # @example Request syntax with placeholder values
3518
3865
  #
3519
3866
  # resp = client.update_annotation_store({
3520
- # description: "StoreDescription",
3521
3867
  # name: "String", # required
3868
+ # description: "StoreDescription",
3522
3869
  # })
3523
3870
  #
3524
3871
  # @example Response structure
3525
3872
  #
3526
- # resp.creation_time #=> Time
3527
- # resp.description #=> String
3528
3873
  # resp.id #=> String
3529
- # resp.name #=> String
3530
3874
  # resp.reference.reference_arn #=> String
3531
3875
  # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
3532
- # resp.store_format #=> String, one of "GFF", "TSV", "VCF"
3876
+ # resp.name #=> String
3877
+ # resp.description #=> String
3878
+ # resp.creation_time #=> Time
3879
+ # resp.update_time #=> Time
3533
3880
  # resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
3534
3881
  # resp.store_options.tsv_store_options.format_to_header #=> Hash
3535
3882
  # resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
3536
3883
  # resp.store_options.tsv_store_options.schema #=> Array
3537
3884
  # resp.store_options.tsv_store_options.schema[0] #=> Hash
3538
3885
  # resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
3539
- # resp.update_time #=> Time
3886
+ # resp.store_format #=> String, one of "GFF", "TSV", "VCF"
3540
3887
  #
3541
3888
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateAnnotationStore AWS API Documentation
3542
3889
  #
@@ -3552,17 +3899,20 @@ module Aws::Omics
3552
3899
  # @option params [required, String] :id
3553
3900
  # The group's ID.
3554
3901
  #
3902
+ # @option params [String] :name
3903
+ # A name for the group.
3904
+ #
3555
3905
  # @option params [Integer] :max_cpus
3556
3906
  # The maximum number of CPUs to use.
3557
3907
  #
3558
- # @option params [Integer] :max_duration
3559
- # A maximum run time for the group in minutes.
3560
- #
3561
3908
  # @option params [Integer] :max_runs
3562
3909
  # The maximum number of concurrent runs for the group.
3563
3910
  #
3564
- # @option params [String] :name
3565
- # A name for the group.
3911
+ # @option params [Integer] :max_duration
3912
+ # A maximum run time for the group in minutes.
3913
+ #
3914
+ # @option params [Integer] :max_gpus
3915
+ # The maximum GPUs that can be used by a run group.
3566
3916
  #
3567
3917
  # @return [Struct] Returns an empty {Seahorse::Client::Response response}.
3568
3918
  #
@@ -3570,10 +3920,11 @@ module Aws::Omics
3570
3920
  #
3571
3921
  # resp = client.update_run_group({
3572
3922
  # id: "RunGroupId", # required
3923
+ # name: "RunGroupName",
3573
3924
  # max_cpus: 1,
3574
- # max_duration: 1,
3575
3925
  # max_runs: 1,
3576
- # name: "RunGroupName",
3926
+ # max_duration: 1,
3927
+ # max_gpus: 1,
3577
3928
  # })
3578
3929
  #
3579
3930
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateRunGroup AWS API Documentation
@@ -3587,37 +3938,37 @@ module Aws::Omics
3587
3938
 
3588
3939
  # Updates a variant store.
3589
3940
  #
3590
- # @option params [String] :description
3591
- # A description for the store.
3592
- #
3593
3941
  # @option params [required, String] :name
3594
3942
  # A name for the store.
3595
3943
  #
3944
+ # @option params [String] :description
3945
+ # A description for the store.
3946
+ #
3596
3947
  # @return [Types::UpdateVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3597
3948
  #
3598
- # * {Types::UpdateVariantStoreResponse#creation_time #creation_time} => Time
3599
- # * {Types::UpdateVariantStoreResponse#description #description} => String
3600
3949
  # * {Types::UpdateVariantStoreResponse#id #id} => String
3601
- # * {Types::UpdateVariantStoreResponse#name #name} => String
3602
3950
  # * {Types::UpdateVariantStoreResponse#reference #reference} => Types::ReferenceItem
3603
3951
  # * {Types::UpdateVariantStoreResponse#status #status} => String
3952
+ # * {Types::UpdateVariantStoreResponse#name #name} => String
3953
+ # * {Types::UpdateVariantStoreResponse#description #description} => String
3954
+ # * {Types::UpdateVariantStoreResponse#creation_time #creation_time} => Time
3604
3955
  # * {Types::UpdateVariantStoreResponse#update_time #update_time} => Time
3605
3956
  #
3606
3957
  # @example Request syntax with placeholder values
3607
3958
  #
3608
3959
  # resp = client.update_variant_store({
3609
- # description: "StoreDescription",
3610
3960
  # name: "String", # required
3961
+ # description: "StoreDescription",
3611
3962
  # })
3612
3963
  #
3613
3964
  # @example Response structure
3614
3965
  #
3615
- # resp.creation_time #=> Time
3616
- # resp.description #=> String
3617
3966
  # resp.id #=> String
3618
- # resp.name #=> String
3619
3967
  # resp.reference.reference_arn #=> String
3620
3968
  # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
3969
+ # resp.name #=> String
3970
+ # resp.description #=> String
3971
+ # resp.creation_time #=> Time
3621
3972
  # resp.update_time #=> Time
3622
3973
  #
3623
3974
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateVariantStore AWS API Documentation
@@ -3631,23 +3982,23 @@ module Aws::Omics
3631
3982
 
3632
3983
  # Updates a workflow.
3633
3984
  #
3634
- # @option params [String] :description
3635
- # A description for the workflow.
3636
- #
3637
3985
  # @option params [required, String] :id
3638
3986
  # The workflow's ID.
3639
3987
  #
3640
3988
  # @option params [String] :name
3641
3989
  # A name for the workflow.
3642
3990
  #
3991
+ # @option params [String] :description
3992
+ # A description for the workflow.
3993
+ #
3643
3994
  # @return [Struct] Returns an empty {Seahorse::Client::Response response}.
3644
3995
  #
3645
3996
  # @example Request syntax with placeholder values
3646
3997
  #
3647
3998
  # resp = client.update_workflow({
3648
- # description: "WorkflowDescription",
3649
3999
  # id: "WorkflowId", # required
3650
4000
  # name: "WorkflowName",
4001
+ # description: "WorkflowDescription",
3651
4002
  # })
3652
4003
  #
3653
4004
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateWorkflow AWS API Documentation
@@ -3659,6 +4010,52 @@ module Aws::Omics
3659
4010
  req.send_request(options)
3660
4011
  end
3661
4012
 
4013
+ # This operation uploads a specific part of a read set. If you upload a
4014
+ # new part using a previously used part number, the previously uploaded
4015
+ # part will be overwritten.
4016
+ #
4017
+ # @option params [required, String] :sequence_store_id
4018
+ # The Sequence Store ID used for the multipart upload.
4019
+ #
4020
+ # @option params [required, String] :upload_id
4021
+ # The ID for the initiated multipart upload.
4022
+ #
4023
+ # @option params [required, String] :part_source
4024
+ # The source file for an upload part.
4025
+ #
4026
+ # @option params [required, Integer] :part_number
4027
+ # The number of the part being uploaded.
4028
+ #
4029
+ # @option params [required, String, IO] :payload
4030
+ # The read set data to upload for a part.
4031
+ #
4032
+ # @return [Types::UploadReadSetPartResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
4033
+ #
4034
+ # * {Types::UploadReadSetPartResponse#checksum #checksum} => String
4035
+ #
4036
+ # @example Request syntax with placeholder values
4037
+ #
4038
+ # resp = client.upload_read_set_part({
4039
+ # sequence_store_id: "SequenceStoreId", # required
4040
+ # upload_id: "UploadId", # required
4041
+ # part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2
4042
+ # part_number: 1, # required
4043
+ # payload: "data", # required
4044
+ # })
4045
+ #
4046
+ # @example Response structure
4047
+ #
4048
+ # resp.checksum #=> String
4049
+ #
4050
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UploadReadSetPart AWS API Documentation
4051
+ #
4052
+ # @overload upload_read_set_part(params = {})
4053
+ # @param [Hash] params ({})
4054
+ def upload_read_set_part(params = {}, options = {})
4055
+ req = build_request(:upload_read_set_part, params)
4056
+ req.send_request(options)
4057
+ end
4058
+
3662
4059
  # @!endgroup
3663
4060
 
3664
4061
  # @param params ({})
@@ -3672,7 +4069,7 @@ module Aws::Omics
3672
4069
  params: params,
3673
4070
  config: config)
3674
4071
  context[:gem_name] = 'aws-sdk-omics'
3675
- context[:gem_version] = '1.3.0'
4072
+ context[:gem_version] = '1.5.0'
3676
4073
  Seahorse::Client::Request.new(handlers, context)
3677
4074
  end
3678
4075