aws-sdk-omics 1.3.0 → 1.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/CHANGELOG.md +5 -0
- data/VERSION +1 -1
- data/lib/aws-sdk-omics/client.rb +1089 -697
- data/lib/aws-sdk-omics/client_api.rb +687 -302
- data/lib/aws-sdk-omics/endpoints.rb +84 -0
- data/lib/aws-sdk-omics/errors.rb +16 -0
- data/lib/aws-sdk-omics/plugins/endpoints.rb +12 -0
- data/lib/aws-sdk-omics/types.rb +2067 -1432
- data/lib/aws-sdk-omics.rb +2 -2
- metadata +2 -2
data/lib/aws-sdk-omics/client.rb
CHANGED
@@ -368,6 +368,32 @@ module Aws::Omics
|
|
368
368
|
|
369
369
|
# @!group API Operations
|
370
370
|
|
371
|
+
# Stops a multipart upload.
|
372
|
+
#
|
373
|
+
# @option params [required, String] :sequence_store_id
|
374
|
+
# The sequence store ID for the store involved in the multipart upload.
|
375
|
+
#
|
376
|
+
# @option params [required, String] :upload_id
|
377
|
+
# The ID for the multipart upload.
|
378
|
+
#
|
379
|
+
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
380
|
+
#
|
381
|
+
# @example Request syntax with placeholder values
|
382
|
+
#
|
383
|
+
# resp = client.abort_multipart_read_set_upload({
|
384
|
+
# sequence_store_id: "SequenceStoreId", # required
|
385
|
+
# upload_id: "UploadId", # required
|
386
|
+
# })
|
387
|
+
#
|
388
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/AbortMultipartReadSetUpload AWS API Documentation
|
389
|
+
#
|
390
|
+
# @overload abort_multipart_read_set_upload(params = {})
|
391
|
+
# @param [Hash] params ({})
|
392
|
+
def abort_multipart_read_set_upload(params = {}, options = {})
|
393
|
+
req = build_request(:abort_multipart_read_set_upload, params)
|
394
|
+
req.send_request(options)
|
395
|
+
end
|
396
|
+
|
371
397
|
# Deletes one or more read sets.
|
372
398
|
#
|
373
399
|
# @option params [required, Array<String>] :ids
|
@@ -390,8 +416,8 @@ module Aws::Omics
|
|
390
416
|
# @example Response structure
|
391
417
|
#
|
392
418
|
# resp.errors #=> Array
|
393
|
-
# resp.errors[0].code #=> String
|
394
419
|
# resp.errors[0].id #=> String
|
420
|
+
# resp.errors[0].code #=> String
|
395
421
|
# resp.errors[0].message #=> String
|
396
422
|
#
|
397
423
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/BatchDeleteReadSet AWS API Documentation
|
@@ -469,16 +495,62 @@ module Aws::Omics
|
|
469
495
|
req.send_request(options)
|
470
496
|
end
|
471
497
|
|
498
|
+
# Concludes a multipart upload once you have uploaded all the
|
499
|
+
# components.
|
500
|
+
#
|
501
|
+
# @option params [required, String] :sequence_store_id
|
502
|
+
# The sequence store ID for the store involved in the multipart upload.
|
503
|
+
#
|
504
|
+
# @option params [required, String] :upload_id
|
505
|
+
# The ID for the multipart upload.
|
506
|
+
#
|
507
|
+
# @option params [required, Array<Types::CompleteReadSetUploadPartListItem>] :parts
|
508
|
+
# The individual uploads or parts of a multipart upload.
|
509
|
+
#
|
510
|
+
# @return [Types::CompleteMultipartReadSetUploadResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
511
|
+
#
|
512
|
+
# * {Types::CompleteMultipartReadSetUploadResponse#read_set_id #read_set_id} => String
|
513
|
+
#
|
514
|
+
# @example Request syntax with placeholder values
|
515
|
+
#
|
516
|
+
# resp = client.complete_multipart_read_set_upload({
|
517
|
+
# sequence_store_id: "SequenceStoreId", # required
|
518
|
+
# upload_id: "UploadId", # required
|
519
|
+
# parts: [ # required
|
520
|
+
# {
|
521
|
+
# part_number: 1, # required
|
522
|
+
# part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2
|
523
|
+
# checksum: "String", # required
|
524
|
+
# },
|
525
|
+
# ],
|
526
|
+
# })
|
527
|
+
#
|
528
|
+
# @example Response structure
|
529
|
+
#
|
530
|
+
# resp.read_set_id #=> String
|
531
|
+
#
|
532
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CompleteMultipartReadSetUpload AWS API Documentation
|
533
|
+
#
|
534
|
+
# @overload complete_multipart_read_set_upload(params = {})
|
535
|
+
# @param [Hash] params ({})
|
536
|
+
def complete_multipart_read_set_upload(params = {}, options = {})
|
537
|
+
req = build_request(:complete_multipart_read_set_upload, params)
|
538
|
+
req.send_request(options)
|
539
|
+
end
|
540
|
+
|
472
541
|
# Creates an annotation store.
|
473
542
|
#
|
474
|
-
# @option params [
|
475
|
-
#
|
543
|
+
# @option params [Types::ReferenceItem] :reference
|
544
|
+
# The genome reference for the store's annotations.
|
476
545
|
#
|
477
546
|
# @option params [String] :name
|
478
547
|
# A name for the store.
|
479
548
|
#
|
480
|
-
# @option params [
|
481
|
-
#
|
549
|
+
# @option params [String] :description
|
550
|
+
# A description for the store.
|
551
|
+
#
|
552
|
+
# @option params [Hash<String,String>] :tags
|
553
|
+
# Tags for the store.
|
482
554
|
#
|
483
555
|
# @option params [Types::SseConfig] :sse_config
|
484
556
|
# Server-side encryption (SSE) settings for the store.
|
@@ -489,30 +561,30 @@ module Aws::Omics
|
|
489
561
|
# @option params [Types::StoreOptions] :store_options
|
490
562
|
# File parsing options for the annotation store.
|
491
563
|
#
|
492
|
-
# @option params [Hash<String,String>] :tags
|
493
|
-
# Tags for the store.
|
494
|
-
#
|
495
564
|
# @return [Types::CreateAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
496
565
|
#
|
497
|
-
# * {Types::CreateAnnotationStoreResponse#creation_time #creation_time} => Time
|
498
566
|
# * {Types::CreateAnnotationStoreResponse#id #id} => String
|
499
|
-
# * {Types::CreateAnnotationStoreResponse#name #name} => String
|
500
567
|
# * {Types::CreateAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
|
501
|
-
# * {Types::CreateAnnotationStoreResponse#status #status} => String
|
502
568
|
# * {Types::CreateAnnotationStoreResponse#store_format #store_format} => String
|
503
569
|
# * {Types::CreateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
|
570
|
+
# * {Types::CreateAnnotationStoreResponse#status #status} => String
|
571
|
+
# * {Types::CreateAnnotationStoreResponse#name #name} => String
|
572
|
+
# * {Types::CreateAnnotationStoreResponse#creation_time #creation_time} => Time
|
504
573
|
#
|
505
574
|
# @example Request syntax with placeholder values
|
506
575
|
#
|
507
576
|
# resp = client.create_annotation_store({
|
508
|
-
# description: "StoreDescription",
|
509
|
-
# name: "CreateAnnotationStoreRequestNameString",
|
510
577
|
# reference: {
|
511
578
|
# reference_arn: "ReferenceArn",
|
512
579
|
# },
|
580
|
+
# name: "CreateAnnotationStoreRequestNameString",
|
581
|
+
# description: "StoreDescription",
|
582
|
+
# tags: {
|
583
|
+
# "TagKey" => "TagValue",
|
584
|
+
# },
|
513
585
|
# sse_config: {
|
514
|
-
# key_arn: "SseConfigKeyArnString",
|
515
586
|
# type: "KMS", # required, accepts KMS
|
587
|
+
# key_arn: "SseConfigKeyArnString",
|
516
588
|
# },
|
517
589
|
# store_format: "GFF", # required, accepts GFF, TSV, VCF
|
518
590
|
# store_options: {
|
@@ -528,18 +600,12 @@ module Aws::Omics
|
|
528
600
|
# ],
|
529
601
|
# },
|
530
602
|
# },
|
531
|
-
# tags: {
|
532
|
-
# "TagKey" => "TagValue",
|
533
|
-
# },
|
534
603
|
# })
|
535
604
|
#
|
536
605
|
# @example Response structure
|
537
606
|
#
|
538
|
-
# resp.creation_time #=> Time
|
539
607
|
# resp.id #=> String
|
540
|
-
# resp.name #=> String
|
541
608
|
# resp.reference.reference_arn #=> String
|
542
|
-
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
543
609
|
# resp.store_format #=> String, one of "GFF", "TSV", "VCF"
|
544
610
|
# resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
|
545
611
|
# resp.store_options.tsv_store_options.format_to_header #=> Hash
|
@@ -547,6 +613,9 @@ module Aws::Omics
|
|
547
613
|
# resp.store_options.tsv_store_options.schema #=> Array
|
548
614
|
# resp.store_options.tsv_store_options.schema[0] #=> Hash
|
549
615
|
# resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
|
616
|
+
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
617
|
+
# resp.name #=> String
|
618
|
+
# resp.creation_time #=> Time
|
550
619
|
#
|
551
620
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateAnnotationStore AWS API Documentation
|
552
621
|
#
|
@@ -557,57 +626,146 @@ module Aws::Omics
|
|
557
626
|
req.send_request(options)
|
558
627
|
end
|
559
628
|
|
560
|
-
#
|
629
|
+
# Begins a multipart read set upload.
|
630
|
+
#
|
631
|
+
# @option params [required, String] :sequence_store_id
|
632
|
+
# The sequence store ID for the store that is the destination of the
|
633
|
+
# multipart uploads.
|
561
634
|
#
|
562
635
|
# @option params [String] :client_token
|
563
|
-
#
|
564
|
-
#
|
636
|
+
# An idempotency token that can be used to avoid triggering multiple
|
637
|
+
# multipart uploads.
|
638
|
+
#
|
639
|
+
# @option params [required, String] :source_file_type
|
640
|
+
# The type of file being uploaded.
|
641
|
+
#
|
642
|
+
# @option params [required, String] :subject_id
|
643
|
+
# The source's subject ID.
|
644
|
+
#
|
645
|
+
# @option params [required, String] :sample_id
|
646
|
+
# The source's sample ID.
|
647
|
+
#
|
648
|
+
# @option params [String] :generated_from
|
649
|
+
# Where the source originated.
|
650
|
+
#
|
651
|
+
# @option params [required, String] :reference_arn
|
652
|
+
# The ARN of the reference.
|
653
|
+
#
|
654
|
+
# @option params [required, String] :name
|
655
|
+
# The name of the read set.
|
565
656
|
#
|
566
657
|
# @option params [String] :description
|
567
|
-
#
|
658
|
+
# The description of the read set.
|
659
|
+
#
|
660
|
+
# @option params [Hash<String,String>] :tags
|
661
|
+
# Any tags to add to the read set.
|
662
|
+
#
|
663
|
+
# @return [Types::CreateMultipartReadSetUploadResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
664
|
+
#
|
665
|
+
# * {Types::CreateMultipartReadSetUploadResponse#sequence_store_id #sequence_store_id} => String
|
666
|
+
# * {Types::CreateMultipartReadSetUploadResponse#upload_id #upload_id} => String
|
667
|
+
# * {Types::CreateMultipartReadSetUploadResponse#source_file_type #source_file_type} => String
|
668
|
+
# * {Types::CreateMultipartReadSetUploadResponse#subject_id #subject_id} => String
|
669
|
+
# * {Types::CreateMultipartReadSetUploadResponse#sample_id #sample_id} => String
|
670
|
+
# * {Types::CreateMultipartReadSetUploadResponse#generated_from #generated_from} => String
|
671
|
+
# * {Types::CreateMultipartReadSetUploadResponse#reference_arn #reference_arn} => String
|
672
|
+
# * {Types::CreateMultipartReadSetUploadResponse#name #name} => String
|
673
|
+
# * {Types::CreateMultipartReadSetUploadResponse#description #description} => String
|
674
|
+
# * {Types::CreateMultipartReadSetUploadResponse#tags #tags} => Hash<String,String>
|
675
|
+
# * {Types::CreateMultipartReadSetUploadResponse#creation_time #creation_time} => Time
|
676
|
+
#
|
677
|
+
# @example Request syntax with placeholder values
|
678
|
+
#
|
679
|
+
# resp = client.create_multipart_read_set_upload({
|
680
|
+
# sequence_store_id: "SequenceStoreId", # required
|
681
|
+
# client_token: "ClientToken",
|
682
|
+
# source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
|
683
|
+
# subject_id: "SubjectId", # required
|
684
|
+
# sample_id: "SampleId", # required
|
685
|
+
# generated_from: "GeneratedFrom",
|
686
|
+
# reference_arn: "ReferenceArn", # required
|
687
|
+
# name: "ReadSetName", # required
|
688
|
+
# description: "ReadSetDescription",
|
689
|
+
# tags: {
|
690
|
+
# "TagKey" => "TagValue",
|
691
|
+
# },
|
692
|
+
# })
|
693
|
+
#
|
694
|
+
# @example Response structure
|
695
|
+
#
|
696
|
+
# resp.sequence_store_id #=> String
|
697
|
+
# resp.upload_id #=> String
|
698
|
+
# resp.source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
699
|
+
# resp.subject_id #=> String
|
700
|
+
# resp.sample_id #=> String
|
701
|
+
# resp.generated_from #=> String
|
702
|
+
# resp.reference_arn #=> String
|
703
|
+
# resp.name #=> String
|
704
|
+
# resp.description #=> String
|
705
|
+
# resp.tags #=> Hash
|
706
|
+
# resp.tags["TagKey"] #=> String
|
707
|
+
# resp.creation_time #=> Time
|
708
|
+
#
|
709
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateMultipartReadSetUpload AWS API Documentation
|
710
|
+
#
|
711
|
+
# @overload create_multipart_read_set_upload(params = {})
|
712
|
+
# @param [Hash] params ({})
|
713
|
+
def create_multipart_read_set_upload(params = {}, options = {})
|
714
|
+
req = build_request(:create_multipart_read_set_upload, params)
|
715
|
+
req.send_request(options)
|
716
|
+
end
|
717
|
+
|
718
|
+
# Creates a reference store.
|
568
719
|
#
|
569
720
|
# @option params [required, String] :name
|
570
721
|
# A name for the store.
|
571
722
|
#
|
723
|
+
# @option params [String] :description
|
724
|
+
# A description for the store.
|
725
|
+
#
|
572
726
|
# @option params [Types::SseConfig] :sse_config
|
573
727
|
# Server-side encryption (SSE) settings for the store.
|
574
728
|
#
|
575
729
|
# @option params [Hash<String,String>] :tags
|
576
730
|
# Tags for the store.
|
577
731
|
#
|
732
|
+
# @option params [String] :client_token
|
733
|
+
# To ensure that requests don't run multiple times, specify a unique
|
734
|
+
# token for each request.
|
735
|
+
#
|
578
736
|
# @return [Types::CreateReferenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
579
737
|
#
|
580
|
-
# * {Types::CreateReferenceStoreResponse#arn #arn} => String
|
581
|
-
# * {Types::CreateReferenceStoreResponse#creation_time #creation_time} => Time
|
582
|
-
# * {Types::CreateReferenceStoreResponse#description #description} => String
|
583
738
|
# * {Types::CreateReferenceStoreResponse#id #id} => String
|
739
|
+
# * {Types::CreateReferenceStoreResponse#arn #arn} => String
|
584
740
|
# * {Types::CreateReferenceStoreResponse#name #name} => String
|
741
|
+
# * {Types::CreateReferenceStoreResponse#description #description} => String
|
585
742
|
# * {Types::CreateReferenceStoreResponse#sse_config #sse_config} => Types::SseConfig
|
743
|
+
# * {Types::CreateReferenceStoreResponse#creation_time #creation_time} => Time
|
586
744
|
#
|
587
745
|
# @example Request syntax with placeholder values
|
588
746
|
#
|
589
747
|
# resp = client.create_reference_store({
|
590
|
-
# client_token: "ClientToken",
|
591
|
-
# description: "ReferenceStoreDescription",
|
592
748
|
# name: "ReferenceStoreName", # required
|
749
|
+
# description: "ReferenceStoreDescription",
|
593
750
|
# sse_config: {
|
594
|
-
# key_arn: "SseConfigKeyArnString",
|
595
751
|
# type: "KMS", # required, accepts KMS
|
752
|
+
# key_arn: "SseConfigKeyArnString",
|
596
753
|
# },
|
597
754
|
# tags: {
|
598
755
|
# "TagKey" => "TagValue",
|
599
756
|
# },
|
757
|
+
# client_token: "ClientToken",
|
600
758
|
# })
|
601
759
|
#
|
602
760
|
# @example Response structure
|
603
761
|
#
|
604
|
-
# resp.arn #=> String
|
605
|
-
# resp.creation_time #=> Time
|
606
|
-
# resp.description #=> String
|
607
762
|
# resp.id #=> String
|
763
|
+
# resp.arn #=> String
|
608
764
|
# resp.name #=> String
|
609
|
-
# resp.
|
765
|
+
# resp.description #=> String
|
610
766
|
# resp.sse_config.type #=> String, one of "KMS"
|
767
|
+
# resp.sse_config.key_arn #=> String
|
768
|
+
# resp.creation_time #=> Time
|
611
769
|
#
|
612
770
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateReferenceStore AWS API Documentation
|
613
771
|
#
|
@@ -620,17 +778,20 @@ module Aws::Omics
|
|
620
778
|
|
621
779
|
# Creates a run group.
|
622
780
|
#
|
781
|
+
# @option params [String] :name
|
782
|
+
# A name for the group.
|
783
|
+
#
|
623
784
|
# @option params [Integer] :max_cpus
|
624
785
|
# The maximum number of CPUs to use in the group.
|
625
786
|
#
|
626
|
-
# @option params [Integer] :max_duration
|
627
|
-
# A maximum run time for the group in minutes.
|
628
|
-
#
|
629
787
|
# @option params [Integer] :max_runs
|
630
788
|
# The maximum number of concurrent runs for the group.
|
631
789
|
#
|
632
|
-
# @option params [
|
633
|
-
# A
|
790
|
+
# @option params [Integer] :max_duration
|
791
|
+
# A maximum run time for the group in minutes.
|
792
|
+
#
|
793
|
+
# @option params [Hash<String,String>] :tags
|
794
|
+
# Tags for the group.
|
634
795
|
#
|
635
796
|
# @option params [required, String] :request_id
|
636
797
|
# To ensure that requests don't run multiple times, specify a unique ID
|
@@ -639,8 +800,8 @@ module Aws::Omics
|
|
639
800
|
# **A suitable default value is auto-generated.** You should normally
|
640
801
|
# not need to pass this option.**
|
641
802
|
#
|
642
|
-
# @option params [
|
643
|
-
#
|
803
|
+
# @option params [Integer] :max_gpus
|
804
|
+
# The maximum GPUs that can be used by a run group.
|
644
805
|
#
|
645
806
|
# @return [Types::CreateRunGroupResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
646
807
|
#
|
@@ -651,14 +812,15 @@ module Aws::Omics
|
|
651
812
|
# @example Request syntax with placeholder values
|
652
813
|
#
|
653
814
|
# resp = client.create_run_group({
|
815
|
+
# name: "RunGroupName",
|
654
816
|
# max_cpus: 1,
|
655
|
-
# max_duration: 1,
|
656
817
|
# max_runs: 1,
|
657
|
-
#
|
658
|
-
# request_id: "RunGroupRequestId", # required
|
818
|
+
# max_duration: 1,
|
659
819
|
# tags: {
|
660
820
|
# "TagKey" => "TagValue",
|
661
821
|
# },
|
822
|
+
# request_id: "RunGroupRequestId", # required
|
823
|
+
# max_gpus: 1,
|
662
824
|
# })
|
663
825
|
#
|
664
826
|
# @example Response structure
|
@@ -679,55 +841,62 @@ module Aws::Omics
|
|
679
841
|
|
680
842
|
# Creates a sequence store.
|
681
843
|
#
|
682
|
-
# @option params [String] :
|
683
|
-
#
|
684
|
-
# token for each request.
|
844
|
+
# @option params [required, String] :name
|
845
|
+
# A name for the store.
|
685
846
|
#
|
686
847
|
# @option params [String] :description
|
687
848
|
# A description for the store.
|
688
849
|
#
|
689
|
-
# @option params [required, String] :name
|
690
|
-
# A name for the store.
|
691
|
-
#
|
692
850
|
# @option params [Types::SseConfig] :sse_config
|
693
851
|
# Server-side encryption (SSE) settings for the store.
|
694
852
|
#
|
695
853
|
# @option params [Hash<String,String>] :tags
|
696
854
|
# Tags for the store.
|
697
855
|
#
|
856
|
+
# @option params [String] :client_token
|
857
|
+
# To ensure that requests don't run multiple times, specify a unique
|
858
|
+
# token for each request.
|
859
|
+
#
|
860
|
+
# @option params [String] :fallback_location
|
861
|
+
# An S3 location that is used to store files that have failed a direct
|
862
|
+
# upload.
|
863
|
+
#
|
698
864
|
# @return [Types::CreateSequenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
699
865
|
#
|
700
|
-
# * {Types::CreateSequenceStoreResponse#arn #arn} => String
|
701
|
-
# * {Types::CreateSequenceStoreResponse#creation_time #creation_time} => Time
|
702
|
-
# * {Types::CreateSequenceStoreResponse#description #description} => String
|
703
866
|
# * {Types::CreateSequenceStoreResponse#id #id} => String
|
867
|
+
# * {Types::CreateSequenceStoreResponse#arn #arn} => String
|
704
868
|
# * {Types::CreateSequenceStoreResponse#name #name} => String
|
869
|
+
# * {Types::CreateSequenceStoreResponse#description #description} => String
|
705
870
|
# * {Types::CreateSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig
|
871
|
+
# * {Types::CreateSequenceStoreResponse#creation_time #creation_time} => Time
|
872
|
+
# * {Types::CreateSequenceStoreResponse#fallback_location #fallback_location} => String
|
706
873
|
#
|
707
874
|
# @example Request syntax with placeholder values
|
708
875
|
#
|
709
876
|
# resp = client.create_sequence_store({
|
710
|
-
# client_token: "ClientToken",
|
711
|
-
# description: "SequenceStoreDescription",
|
712
877
|
# name: "SequenceStoreName", # required
|
878
|
+
# description: "SequenceStoreDescription",
|
713
879
|
# sse_config: {
|
714
|
-
# key_arn: "SseConfigKeyArnString",
|
715
880
|
# type: "KMS", # required, accepts KMS
|
881
|
+
# key_arn: "SseConfigKeyArnString",
|
716
882
|
# },
|
717
883
|
# tags: {
|
718
884
|
# "TagKey" => "TagValue",
|
719
885
|
# },
|
886
|
+
# client_token: "ClientToken",
|
887
|
+
# fallback_location: "S3Destination",
|
720
888
|
# })
|
721
889
|
#
|
722
890
|
# @example Response structure
|
723
891
|
#
|
724
|
-
# resp.arn #=> String
|
725
|
-
# resp.creation_time #=> Time
|
726
|
-
# resp.description #=> String
|
727
892
|
# resp.id #=> String
|
893
|
+
# resp.arn #=> String
|
728
894
|
# resp.name #=> String
|
729
|
-
# resp.
|
895
|
+
# resp.description #=> String
|
730
896
|
# resp.sse_config.type #=> String, one of "KMS"
|
897
|
+
# resp.sse_config.key_arn #=> String
|
898
|
+
# resp.creation_time #=> Time
|
899
|
+
# resp.fallback_location #=> String
|
731
900
|
#
|
732
901
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateSequenceStore AWS API Documentation
|
733
902
|
#
|
@@ -740,53 +909,53 @@ module Aws::Omics
|
|
740
909
|
|
741
910
|
# Creates a variant store.
|
742
911
|
#
|
743
|
-
# @option params [
|
744
|
-
#
|
912
|
+
# @option params [required, Types::ReferenceItem] :reference
|
913
|
+
# The genome reference for the store's variants.
|
745
914
|
#
|
746
915
|
# @option params [String] :name
|
747
916
|
# A name for the store.
|
748
917
|
#
|
749
|
-
# @option params [
|
750
|
-
#
|
751
|
-
#
|
752
|
-
# @option params [Types::SseConfig] :sse_config
|
753
|
-
# Server-side encryption (SSE) settings for the store.
|
918
|
+
# @option params [String] :description
|
919
|
+
# A description for the store.
|
754
920
|
#
|
755
921
|
# @option params [Hash<String,String>] :tags
|
756
922
|
# Tags for the store.
|
757
923
|
#
|
924
|
+
# @option params [Types::SseConfig] :sse_config
|
925
|
+
# Server-side encryption (SSE) settings for the store.
|
926
|
+
#
|
758
927
|
# @return [Types::CreateVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
759
928
|
#
|
760
|
-
# * {Types::CreateVariantStoreResponse#creation_time #creation_time} => Time
|
761
929
|
# * {Types::CreateVariantStoreResponse#id #id} => String
|
762
|
-
# * {Types::CreateVariantStoreResponse#name #name} => String
|
763
930
|
# * {Types::CreateVariantStoreResponse#reference #reference} => Types::ReferenceItem
|
764
931
|
# * {Types::CreateVariantStoreResponse#status #status} => String
|
932
|
+
# * {Types::CreateVariantStoreResponse#name #name} => String
|
933
|
+
# * {Types::CreateVariantStoreResponse#creation_time #creation_time} => Time
|
765
934
|
#
|
766
935
|
# @example Request syntax with placeholder values
|
767
936
|
#
|
768
937
|
# resp = client.create_variant_store({
|
769
|
-
# description: "StoreDescription",
|
770
|
-
# name: "CreateVariantStoreRequestNameString",
|
771
938
|
# reference: { # required
|
772
939
|
# reference_arn: "ReferenceArn",
|
773
940
|
# },
|
774
|
-
#
|
775
|
-
#
|
776
|
-
# type: "KMS", # required, accepts KMS
|
777
|
-
# },
|
941
|
+
# name: "CreateVariantStoreRequestNameString",
|
942
|
+
# description: "StoreDescription",
|
778
943
|
# tags: {
|
779
944
|
# "TagKey" => "TagValue",
|
780
945
|
# },
|
946
|
+
# sse_config: {
|
947
|
+
# type: "KMS", # required, accepts KMS
|
948
|
+
# key_arn: "SseConfigKeyArnString",
|
949
|
+
# },
|
781
950
|
# })
|
782
951
|
#
|
783
952
|
# @example Response structure
|
784
953
|
#
|
785
|
-
# resp.creation_time #=> Time
|
786
954
|
# resp.id #=> String
|
787
|
-
# resp.name #=> String
|
788
955
|
# resp.reference.reference_arn #=> String
|
789
956
|
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
957
|
+
# resp.name #=> String
|
958
|
+
# resp.creation_time #=> Time
|
790
959
|
#
|
791
960
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateVariantStore AWS API Documentation
|
792
961
|
#
|
@@ -799,11 +968,8 @@ module Aws::Omics
|
|
799
968
|
|
800
969
|
# Creates a workflow.
|
801
970
|
#
|
802
|
-
# @option params [String] :
|
803
|
-
#
|
804
|
-
#
|
805
|
-
# @option params [String, StringIO, File] :definition_zip
|
806
|
-
# A ZIP archive for the workflow.
|
971
|
+
# @option params [String] :name
|
972
|
+
# A name for the workflow.
|
807
973
|
#
|
808
974
|
# @option params [String] :description
|
809
975
|
# A description for the workflow.
|
@@ -811,28 +977,34 @@ module Aws::Omics
|
|
811
977
|
# @option params [String] :engine
|
812
978
|
# An engine for the workflow.
|
813
979
|
#
|
980
|
+
# @option params [String, StringIO, File] :definition_zip
|
981
|
+
# A ZIP archive for the workflow.
|
982
|
+
#
|
983
|
+
# @option params [String] :definition_uri
|
984
|
+
# The URI of a definition for the workflow.
|
985
|
+
#
|
814
986
|
# @option params [String] :main
|
815
987
|
# The path of the main definition file for the workflow.
|
816
988
|
#
|
817
|
-
# @option params [String] :name
|
818
|
-
# A name for the workflow.
|
819
|
-
#
|
820
989
|
# @option params [Hash<String,Types::WorkflowParameter>] :parameter_template
|
821
990
|
# A parameter template for the workflow.
|
822
991
|
#
|
823
|
-
# @option params [required, String] :request_id
|
824
|
-
# To ensure that requests don't run multiple times, specify a unique ID
|
825
|
-
# for each request.
|
826
|
-
#
|
827
|
-
# **A suitable default value is auto-generated.** You should normally
|
828
|
-
# not need to pass this option.**
|
829
|
-
#
|
830
992
|
# @option params [Integer] :storage_capacity
|
831
993
|
# A storage capacity for the workflow in gigabytes.
|
832
994
|
#
|
833
995
|
# @option params [Hash<String,String>] :tags
|
834
996
|
# Tags for the workflow.
|
835
997
|
#
|
998
|
+
# @option params [required, String] :request_id
|
999
|
+
# To ensure that requests don't run multiple times, specify a unique ID
|
1000
|
+
# for each request.
|
1001
|
+
#
|
1002
|
+
# **A suitable default value is auto-generated.** You should normally
|
1003
|
+
# not need to pass this option.**
|
1004
|
+
#
|
1005
|
+
# @option params [String] :accelerators
|
1006
|
+
# The computational accelerator specified to run the workflow.
|
1007
|
+
#
|
836
1008
|
# @return [Types::CreateWorkflowResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
837
1009
|
#
|
838
1010
|
# * {Types::CreateWorkflowResponse#arn #arn} => String
|
@@ -843,30 +1015,31 @@ module Aws::Omics
|
|
843
1015
|
# @example Request syntax with placeholder values
|
844
1016
|
#
|
845
1017
|
# resp = client.create_workflow({
|
846
|
-
#
|
847
|
-
# definition_zip: "data",
|
1018
|
+
# name: "WorkflowName",
|
848
1019
|
# description: "WorkflowDescription",
|
849
1020
|
# engine: "WDL", # accepts WDL, NEXTFLOW
|
1021
|
+
# definition_zip: "data",
|
1022
|
+
# definition_uri: "WorkflowDefinition",
|
850
1023
|
# main: "WorkflowMain",
|
851
|
-
# name: "WorkflowName",
|
852
1024
|
# parameter_template: {
|
853
1025
|
# "WorkflowParameterName" => {
|
854
1026
|
# description: "WorkflowParameterDescription",
|
855
1027
|
# optional: false,
|
856
1028
|
# },
|
857
1029
|
# },
|
858
|
-
# request_id: "WorkflowRequestId", # required
|
859
1030
|
# storage_capacity: 1,
|
860
1031
|
# tags: {
|
861
1032
|
# "TagKey" => "TagValue",
|
862
1033
|
# },
|
1034
|
+
# request_id: "WorkflowRequestId", # required
|
1035
|
+
# accelerators: "GPU", # accepts GPU
|
863
1036
|
# })
|
864
1037
|
#
|
865
1038
|
# @example Response structure
|
866
1039
|
#
|
867
1040
|
# resp.arn #=> String
|
868
1041
|
# resp.id #=> String
|
869
|
-
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
|
1042
|
+
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
|
870
1043
|
# resp.tags #=> Hash
|
871
1044
|
# resp.tags["TagKey"] #=> String
|
872
1045
|
#
|
@@ -881,12 +1054,12 @@ module Aws::Omics
|
|
881
1054
|
|
882
1055
|
# Deletes an annotation store.
|
883
1056
|
#
|
884
|
-
# @option params [Boolean] :force
|
885
|
-
# Whether to force deletion.
|
886
|
-
#
|
887
1057
|
# @option params [required, String] :name
|
888
1058
|
# The store's name.
|
889
1059
|
#
|
1060
|
+
# @option params [Boolean] :force
|
1061
|
+
# Whether to force deletion.
|
1062
|
+
#
|
890
1063
|
# @return [Types::DeleteAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
891
1064
|
#
|
892
1065
|
# * {Types::DeleteAnnotationStoreResponse#status #status} => String
|
@@ -894,8 +1067,8 @@ module Aws::Omics
|
|
894
1067
|
# @example Request syntax with placeholder values
|
895
1068
|
#
|
896
1069
|
# resp = client.delete_annotation_store({
|
897
|
-
# force: false,
|
898
1070
|
# name: "String", # required
|
1071
|
+
# force: false,
|
899
1072
|
# })
|
900
1073
|
#
|
901
1074
|
# @example Response structure
|
@@ -1027,12 +1200,12 @@ module Aws::Omics
|
|
1027
1200
|
|
1028
1201
|
# Deletes a variant store.
|
1029
1202
|
#
|
1030
|
-
# @option params [Boolean] :force
|
1031
|
-
# Whether to force deletion.
|
1032
|
-
#
|
1033
1203
|
# @option params [required, String] :name
|
1034
1204
|
# The store's name.
|
1035
1205
|
#
|
1206
|
+
# @option params [Boolean] :force
|
1207
|
+
# Whether to force deletion.
|
1208
|
+
#
|
1036
1209
|
# @return [Types::DeleteVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1037
1210
|
#
|
1038
1211
|
# * {Types::DeleteVariantStoreResponse#status #status} => String
|
@@ -1040,8 +1213,8 @@ module Aws::Omics
|
|
1040
1213
|
# @example Request syntax with placeholder values
|
1041
1214
|
#
|
1042
1215
|
# resp = client.delete_variant_store({
|
1043
|
-
# force: false,
|
1044
1216
|
# name: "String", # required
|
1217
|
+
# force: false,
|
1045
1218
|
# })
|
1046
1219
|
#
|
1047
1220
|
# @example Response structure
|
@@ -1086,17 +1259,18 @@ module Aws::Omics
|
|
1086
1259
|
#
|
1087
1260
|
# @return [Types::GetAnnotationImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1088
1261
|
#
|
1089
|
-
# * {Types::GetAnnotationImportResponse#completion_time #completion_time} => Time
|
1090
|
-
# * {Types::GetAnnotationImportResponse#creation_time #creation_time} => Time
|
1091
|
-
# * {Types::GetAnnotationImportResponse#destination_name #destination_name} => String
|
1092
|
-
# * {Types::GetAnnotationImportResponse#format_options #format_options} => Types::FormatOptions
|
1093
1262
|
# * {Types::GetAnnotationImportResponse#id #id} => String
|
1094
|
-
# * {Types::GetAnnotationImportResponse#
|
1263
|
+
# * {Types::GetAnnotationImportResponse#destination_name #destination_name} => String
|
1095
1264
|
# * {Types::GetAnnotationImportResponse#role_arn #role_arn} => String
|
1096
|
-
# * {Types::GetAnnotationImportResponse#run_left_normalization #run_left_normalization} => Boolean
|
1097
1265
|
# * {Types::GetAnnotationImportResponse#status #status} => String
|
1098
1266
|
# * {Types::GetAnnotationImportResponse#status_message #status_message} => String
|
1267
|
+
# * {Types::GetAnnotationImportResponse#creation_time #creation_time} => Time
|
1099
1268
|
# * {Types::GetAnnotationImportResponse#update_time #update_time} => Time
|
1269
|
+
# * {Types::GetAnnotationImportResponse#completion_time #completion_time} => Time
|
1270
|
+
# * {Types::GetAnnotationImportResponse#items #items} => Array<Types::AnnotationImportItemDetail>
|
1271
|
+
# * {Types::GetAnnotationImportResponse#run_left_normalization #run_left_normalization} => Boolean
|
1272
|
+
# * {Types::GetAnnotationImportResponse#format_options #format_options} => Types::FormatOptions
|
1273
|
+
# * {Types::GetAnnotationImportResponse#annotation_fields #annotation_fields} => Hash<String,String>
|
1100
1274
|
#
|
1101
1275
|
# @example Request syntax with placeholder values
|
1102
1276
|
#
|
@@ -1106,29 +1280,31 @@ module Aws::Omics
|
|
1106
1280
|
#
|
1107
1281
|
# @example Response structure
|
1108
1282
|
#
|
1109
|
-
# resp.
|
1110
|
-
# resp.creation_time #=> Time
|
1283
|
+
# resp.id #=> String
|
1111
1284
|
# resp.destination_name #=> String
|
1112
|
-
# resp.
|
1285
|
+
# resp.role_arn #=> String
|
1286
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
1287
|
+
# resp.status_message #=> String
|
1288
|
+
# resp.creation_time #=> Time
|
1289
|
+
# resp.update_time #=> Time
|
1290
|
+
# resp.completion_time #=> Time
|
1291
|
+
# resp.items #=> Array
|
1292
|
+
# resp.items[0].source #=> String
|
1293
|
+
# resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
1294
|
+
# resp.run_left_normalization #=> Boolean
|
1295
|
+
# resp.format_options.tsv_options.read_options.sep #=> String
|
1113
1296
|
# resp.format_options.tsv_options.read_options.encoding #=> String
|
1297
|
+
# resp.format_options.tsv_options.read_options.quote #=> String
|
1298
|
+
# resp.format_options.tsv_options.read_options.quote_all #=> Boolean
|
1114
1299
|
# resp.format_options.tsv_options.read_options.escape #=> String
|
1115
1300
|
# resp.format_options.tsv_options.read_options.escape_quotes #=> Boolean
|
1301
|
+
# resp.format_options.tsv_options.read_options.comment #=> String
|
1116
1302
|
# resp.format_options.tsv_options.read_options.header #=> Boolean
|
1117
1303
|
# resp.format_options.tsv_options.read_options.line_sep #=> String
|
1118
|
-
# resp.format_options.tsv_options.read_options.quote #=> String
|
1119
|
-
# resp.format_options.tsv_options.read_options.quote_all #=> Boolean
|
1120
|
-
# resp.format_options.tsv_options.read_options.sep #=> String
|
1121
|
-
# resp.format_options.vcf_options.ignore_filter_field #=> Boolean
|
1122
1304
|
# resp.format_options.vcf_options.ignore_qual_field #=> Boolean
|
1123
|
-
# resp.
|
1124
|
-
# resp.
|
1125
|
-
# resp.
|
1126
|
-
# resp.items[0].source #=> String
|
1127
|
-
# resp.role_arn #=> String
|
1128
|
-
# resp.run_left_normalization #=> Boolean
|
1129
|
-
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
1130
|
-
# resp.status_message #=> String
|
1131
|
-
# resp.update_time #=> Time
|
1305
|
+
# resp.format_options.vcf_options.ignore_filter_field #=> Boolean
|
1306
|
+
# resp.annotation_fields #=> Hash
|
1307
|
+
# resp.annotation_fields["AnnotationFieldMapKeyString"] #=> String
|
1132
1308
|
#
|
1133
1309
|
#
|
1134
1310
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1151,20 +1327,20 @@ module Aws::Omics
|
|
1151
1327
|
#
|
1152
1328
|
# @return [Types::GetAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1153
1329
|
#
|
1154
|
-
# * {Types::GetAnnotationStoreResponse#creation_time #creation_time} => Time
|
1155
|
-
# * {Types::GetAnnotationStoreResponse#description #description} => String
|
1156
1330
|
# * {Types::GetAnnotationStoreResponse#id #id} => String
|
1157
|
-
# * {Types::GetAnnotationStoreResponse#name #name} => String
|
1158
1331
|
# * {Types::GetAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
|
1159
|
-
# * {Types::GetAnnotationStoreResponse#sse_config #sse_config} => Types::SseConfig
|
1160
1332
|
# * {Types::GetAnnotationStoreResponse#status #status} => String
|
1161
|
-
# * {Types::GetAnnotationStoreResponse#status_message #status_message} => String
|
1162
1333
|
# * {Types::GetAnnotationStoreResponse#store_arn #store_arn} => String
|
1163
|
-
# * {Types::GetAnnotationStoreResponse#
|
1334
|
+
# * {Types::GetAnnotationStoreResponse#name #name} => String
|
1335
|
+
# * {Types::GetAnnotationStoreResponse#description #description} => String
|
1336
|
+
# * {Types::GetAnnotationStoreResponse#sse_config #sse_config} => Types::SseConfig
|
1337
|
+
# * {Types::GetAnnotationStoreResponse#creation_time #creation_time} => Time
|
1338
|
+
# * {Types::GetAnnotationStoreResponse#update_time #update_time} => Time
|
1339
|
+
# * {Types::GetAnnotationStoreResponse#tags #tags} => Hash<String,String>
|
1164
1340
|
# * {Types::GetAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
|
1341
|
+
# * {Types::GetAnnotationStoreResponse#store_format #store_format} => String
|
1342
|
+
# * {Types::GetAnnotationStoreResponse#status_message #status_message} => String
|
1165
1343
|
# * {Types::GetAnnotationStoreResponse#store_size_bytes #store_size_bytes} => Integer
|
1166
|
-
# * {Types::GetAnnotationStoreResponse#tags #tags} => Hash<String,String>
|
1167
|
-
# * {Types::GetAnnotationStoreResponse#update_time #update_time} => Time
|
1168
1344
|
#
|
1169
1345
|
# @example Request syntax with placeholder values
|
1170
1346
|
#
|
@@ -1174,27 +1350,27 @@ module Aws::Omics
|
|
1174
1350
|
#
|
1175
1351
|
# @example Response structure
|
1176
1352
|
#
|
1177
|
-
# resp.creation_time #=> Time
|
1178
|
-
# resp.description #=> String
|
1179
1353
|
# resp.id #=> String
|
1180
|
-
# resp.name #=> String
|
1181
1354
|
# resp.reference.reference_arn #=> String
|
1182
|
-
# resp.sse_config.key_arn #=> String
|
1183
|
-
# resp.sse_config.type #=> String, one of "KMS"
|
1184
1355
|
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
1185
|
-
# resp.status_message #=> String
|
1186
1356
|
# resp.store_arn #=> String
|
1187
|
-
# resp.
|
1357
|
+
# resp.name #=> String
|
1358
|
+
# resp.description #=> String
|
1359
|
+
# resp.sse_config.type #=> String, one of "KMS"
|
1360
|
+
# resp.sse_config.key_arn #=> String
|
1361
|
+
# resp.creation_time #=> Time
|
1362
|
+
# resp.update_time #=> Time
|
1363
|
+
# resp.tags #=> Hash
|
1364
|
+
# resp.tags["TagKey"] #=> String
|
1188
1365
|
# resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
|
1189
1366
|
# resp.store_options.tsv_store_options.format_to_header #=> Hash
|
1190
1367
|
# resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
|
1191
1368
|
# resp.store_options.tsv_store_options.schema #=> Array
|
1192
1369
|
# resp.store_options.tsv_store_options.schema[0] #=> Hash
|
1193
1370
|
# resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
|
1371
|
+
# resp.store_format #=> String, one of "GFF", "TSV", "VCF"
|
1372
|
+
# resp.status_message #=> String
|
1194
1373
|
# resp.store_size_bytes #=> Integer
|
1195
|
-
# resp.tags #=> Hash
|
1196
|
-
# resp.tags["TagKey"] #=> String
|
1197
|
-
# resp.update_time #=> Time
|
1198
1374
|
#
|
1199
1375
|
#
|
1200
1376
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1213,18 +1389,18 @@ module Aws::Omics
|
|
1213
1389
|
|
1214
1390
|
# Gets a file from a read set.
|
1215
1391
|
#
|
1216
|
-
# @option params [String] :file
|
1217
|
-
# The file to retrieve.
|
1218
|
-
#
|
1219
1392
|
# @option params [required, String] :id
|
1220
1393
|
# The read set's ID.
|
1221
1394
|
#
|
1222
|
-
# @option params [required, Integer] :part_number
|
1223
|
-
# The part number to retrieve.
|
1224
|
-
#
|
1225
1395
|
# @option params [required, String] :sequence_store_id
|
1226
1396
|
# The read set's sequence store ID.
|
1227
1397
|
#
|
1398
|
+
# @option params [String] :file
|
1399
|
+
# The file to retrieve.
|
1400
|
+
#
|
1401
|
+
# @option params [required, Integer] :part_number
|
1402
|
+
# The part number to retrieve.
|
1403
|
+
#
|
1228
1404
|
# @return [Types::GetReadSetResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1229
1405
|
#
|
1230
1406
|
# * {Types::GetReadSetResponse#payload #payload} => IO
|
@@ -1232,10 +1408,10 @@ module Aws::Omics
|
|
1232
1408
|
# @example Request syntax with placeholder values
|
1233
1409
|
#
|
1234
1410
|
# resp = client.get_read_set({
|
1235
|
-
# file: "SOURCE1", # accepts SOURCE1, SOURCE2, INDEX
|
1236
1411
|
# id: "ReadSetId", # required
|
1237
|
-
# part_number: 1, # required
|
1238
1412
|
# sequence_store_id: "SequenceStoreId", # required
|
1413
|
+
# file: "SOURCE1", # accepts SOURCE1, SOURCE2, INDEX
|
1414
|
+
# part_number: 1, # required
|
1239
1415
|
# })
|
1240
1416
|
#
|
1241
1417
|
# @example Response structure
|
@@ -1261,13 +1437,13 @@ module Aws::Omics
|
|
1261
1437
|
#
|
1262
1438
|
# @return [Types::GetReadSetActivationJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1263
1439
|
#
|
1264
|
-
# * {Types::GetReadSetActivationJobResponse#completion_time #completion_time} => Time
|
1265
|
-
# * {Types::GetReadSetActivationJobResponse#creation_time #creation_time} => Time
|
1266
1440
|
# * {Types::GetReadSetActivationJobResponse#id #id} => String
|
1267
1441
|
# * {Types::GetReadSetActivationJobResponse#sequence_store_id #sequence_store_id} => String
|
1268
|
-
# * {Types::GetReadSetActivationJobResponse#sources #sources} => Array<Types::ActivateReadSetSourceItem>
|
1269
1442
|
# * {Types::GetReadSetActivationJobResponse#status #status} => String
|
1270
1443
|
# * {Types::GetReadSetActivationJobResponse#status_message #status_message} => String
|
1444
|
+
# * {Types::GetReadSetActivationJobResponse#creation_time #creation_time} => Time
|
1445
|
+
# * {Types::GetReadSetActivationJobResponse#completion_time #completion_time} => Time
|
1446
|
+
# * {Types::GetReadSetActivationJobResponse#sources #sources} => Array<Types::ActivateReadSetSourceItem>
|
1271
1447
|
#
|
1272
1448
|
# @example Request syntax with placeholder values
|
1273
1449
|
#
|
@@ -1278,16 +1454,16 @@ module Aws::Omics
|
|
1278
1454
|
#
|
1279
1455
|
# @example Response structure
|
1280
1456
|
#
|
1281
|
-
# resp.completion_time #=> Time
|
1282
|
-
# resp.creation_time #=> Time
|
1283
1457
|
# resp.id #=> String
|
1284
1458
|
# resp.sequence_store_id #=> String
|
1459
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1460
|
+
# resp.status_message #=> String
|
1461
|
+
# resp.creation_time #=> Time
|
1462
|
+
# resp.completion_time #=> Time
|
1285
1463
|
# resp.sources #=> Array
|
1286
1464
|
# resp.sources[0].read_set_id #=> String
|
1287
1465
|
# resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
|
1288
1466
|
# resp.sources[0].status_message #=> String
|
1289
|
-
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1290
|
-
# resp.status_message #=> String
|
1291
1467
|
#
|
1292
1468
|
#
|
1293
1469
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1305,43 +1481,43 @@ module Aws::Omics
|
|
1305
1481
|
|
1306
1482
|
# Gets information about a read set export job.
|
1307
1483
|
#
|
1308
|
-
# @option params [required, String] :id
|
1309
|
-
# The job's ID.
|
1310
|
-
#
|
1311
1484
|
# @option params [required, String] :sequence_store_id
|
1312
1485
|
# The job's sequence store ID.
|
1313
1486
|
#
|
1487
|
+
# @option params [required, String] :id
|
1488
|
+
# The job's ID.
|
1489
|
+
#
|
1314
1490
|
# @return [Types::GetReadSetExportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1315
1491
|
#
|
1316
|
-
# * {Types::GetReadSetExportJobResponse#completion_time #completion_time} => Time
|
1317
|
-
# * {Types::GetReadSetExportJobResponse#creation_time #creation_time} => Time
|
1318
|
-
# * {Types::GetReadSetExportJobResponse#destination #destination} => String
|
1319
1492
|
# * {Types::GetReadSetExportJobResponse#id #id} => String
|
1320
|
-
# * {Types::GetReadSetExportJobResponse#read_sets #read_sets} => Array<Types::ExportReadSetDetail>
|
1321
1493
|
# * {Types::GetReadSetExportJobResponse#sequence_store_id #sequence_store_id} => String
|
1494
|
+
# * {Types::GetReadSetExportJobResponse#destination #destination} => String
|
1322
1495
|
# * {Types::GetReadSetExportJobResponse#status #status} => String
|
1323
1496
|
# * {Types::GetReadSetExportJobResponse#status_message #status_message} => String
|
1497
|
+
# * {Types::GetReadSetExportJobResponse#creation_time #creation_time} => Time
|
1498
|
+
# * {Types::GetReadSetExportJobResponse#completion_time #completion_time} => Time
|
1499
|
+
# * {Types::GetReadSetExportJobResponse#read_sets #read_sets} => Array<Types::ExportReadSetDetail>
|
1324
1500
|
#
|
1325
1501
|
# @example Request syntax with placeholder values
|
1326
1502
|
#
|
1327
1503
|
# resp = client.get_read_set_export_job({
|
1328
|
-
# id: "ExportJobId", # required
|
1329
1504
|
# sequence_store_id: "SequenceStoreId", # required
|
1505
|
+
# id: "ExportJobId", # required
|
1330
1506
|
# })
|
1331
1507
|
#
|
1332
1508
|
# @example Response structure
|
1333
1509
|
#
|
1334
|
-
# resp.completion_time #=> Time
|
1335
|
-
# resp.creation_time #=> Time
|
1336
|
-
# resp.destination #=> String
|
1337
1510
|
# resp.id #=> String
|
1511
|
+
# resp.sequence_store_id #=> String
|
1512
|
+
# resp.destination #=> String
|
1513
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1514
|
+
# resp.status_message #=> String
|
1515
|
+
# resp.creation_time #=> Time
|
1516
|
+
# resp.completion_time #=> Time
|
1338
1517
|
# resp.read_sets #=> Array
|
1339
1518
|
# resp.read_sets[0].id #=> String
|
1340
1519
|
# resp.read_sets[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
|
1341
1520
|
# resp.read_sets[0].status_message #=> String
|
1342
|
-
# resp.sequence_store_id #=> String
|
1343
|
-
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1344
|
-
# resp.status_message #=> String
|
1345
1521
|
#
|
1346
1522
|
#
|
1347
1523
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1367,14 +1543,14 @@ module Aws::Omics
|
|
1367
1543
|
#
|
1368
1544
|
# @return [Types::GetReadSetImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1369
1545
|
#
|
1370
|
-
# * {Types::GetReadSetImportJobResponse#completion_time #completion_time} => Time
|
1371
|
-
# * {Types::GetReadSetImportJobResponse#creation_time #creation_time} => Time
|
1372
1546
|
# * {Types::GetReadSetImportJobResponse#id #id} => String
|
1373
|
-
# * {Types::GetReadSetImportJobResponse#role_arn #role_arn} => String
|
1374
1547
|
# * {Types::GetReadSetImportJobResponse#sequence_store_id #sequence_store_id} => String
|
1375
|
-
# * {Types::GetReadSetImportJobResponse#
|
1548
|
+
# * {Types::GetReadSetImportJobResponse#role_arn #role_arn} => String
|
1376
1549
|
# * {Types::GetReadSetImportJobResponse#status #status} => String
|
1377
1550
|
# * {Types::GetReadSetImportJobResponse#status_message #status_message} => String
|
1551
|
+
# * {Types::GetReadSetImportJobResponse#creation_time #creation_time} => Time
|
1552
|
+
# * {Types::GetReadSetImportJobResponse#completion_time #completion_time} => Time
|
1553
|
+
# * {Types::GetReadSetImportJobResponse#sources #sources} => Array<Types::ImportReadSetSourceItem>
|
1378
1554
|
#
|
1379
1555
|
# @example Request syntax with placeholder values
|
1380
1556
|
#
|
@@ -1385,27 +1561,27 @@ module Aws::Omics
|
|
1385
1561
|
#
|
1386
1562
|
# @example Response structure
|
1387
1563
|
#
|
1388
|
-
# resp.completion_time #=> Time
|
1389
|
-
# resp.creation_time #=> Time
|
1390
1564
|
# resp.id #=> String
|
1391
|
-
# resp.role_arn #=> String
|
1392
1565
|
# resp.sequence_store_id #=> String
|
1566
|
+
# resp.role_arn #=> String
|
1567
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1568
|
+
# resp.status_message #=> String
|
1569
|
+
# resp.creation_time #=> Time
|
1570
|
+
# resp.completion_time #=> Time
|
1393
1571
|
# resp.sources #=> Array
|
1394
|
-
# resp.sources[0].description #=> String
|
1395
|
-
# resp.sources[0].generated_from #=> String
|
1396
|
-
# resp.sources[0].name #=> String
|
1397
|
-
# resp.sources[0].reference_arn #=> String
|
1398
|
-
# resp.sources[0].sample_id #=> String
|
1399
|
-
# resp.sources[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
1400
1572
|
# resp.sources[0].source_files.source1 #=> String
|
1401
1573
|
# resp.sources[0].source_files.source2 #=> String
|
1574
|
+
# resp.sources[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
1402
1575
|
# resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
|
1403
1576
|
# resp.sources[0].status_message #=> String
|
1404
1577
|
# resp.sources[0].subject_id #=> String
|
1578
|
+
# resp.sources[0].sample_id #=> String
|
1579
|
+
# resp.sources[0].generated_from #=> String
|
1580
|
+
# resp.sources[0].reference_arn #=> String
|
1581
|
+
# resp.sources[0].name #=> String
|
1582
|
+
# resp.sources[0].description #=> String
|
1405
1583
|
# resp.sources[0].tags #=> Hash
|
1406
1584
|
# resp.sources[0].tags["TagKey"] #=> String
|
1407
|
-
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1408
|
-
# resp.status_message #=> String
|
1409
1585
|
#
|
1410
1586
|
#
|
1411
1587
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1431,19 +1607,20 @@ module Aws::Omics
|
|
1431
1607
|
#
|
1432
1608
|
# @return [Types::GetReadSetMetadataResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1433
1609
|
#
|
1610
|
+
# * {Types::GetReadSetMetadataResponse#id #id} => String
|
1434
1611
|
# * {Types::GetReadSetMetadataResponse#arn #arn} => String
|
1435
|
-
# * {Types::GetReadSetMetadataResponse#
|
1612
|
+
# * {Types::GetReadSetMetadataResponse#sequence_store_id #sequence_store_id} => String
|
1613
|
+
# * {Types::GetReadSetMetadataResponse#subject_id #subject_id} => String
|
1614
|
+
# * {Types::GetReadSetMetadataResponse#sample_id #sample_id} => String
|
1615
|
+
# * {Types::GetReadSetMetadataResponse#status #status} => String
|
1616
|
+
# * {Types::GetReadSetMetadataResponse#name #name} => String
|
1436
1617
|
# * {Types::GetReadSetMetadataResponse#description #description} => String
|
1437
1618
|
# * {Types::GetReadSetMetadataResponse#file_type #file_type} => String
|
1438
|
-
# * {Types::GetReadSetMetadataResponse#
|
1439
|
-
# * {Types::GetReadSetMetadataResponse#id #id} => String
|
1440
|
-
# * {Types::GetReadSetMetadataResponse#name #name} => String
|
1441
|
-
# * {Types::GetReadSetMetadataResponse#reference_arn #reference_arn} => String
|
1442
|
-
# * {Types::GetReadSetMetadataResponse#sample_id #sample_id} => String
|
1619
|
+
# * {Types::GetReadSetMetadataResponse#creation_time #creation_time} => Time
|
1443
1620
|
# * {Types::GetReadSetMetadataResponse#sequence_information #sequence_information} => Types::SequenceInformation
|
1444
|
-
# * {Types::GetReadSetMetadataResponse#
|
1445
|
-
# * {Types::GetReadSetMetadataResponse#
|
1446
|
-
# * {Types::GetReadSetMetadataResponse#
|
1621
|
+
# * {Types::GetReadSetMetadataResponse#reference_arn #reference_arn} => String
|
1622
|
+
# * {Types::GetReadSetMetadataResponse#files #files} => Types::ReadSetFiles
|
1623
|
+
# * {Types::GetReadSetMetadataResponse#status_message #status_message} => String
|
1447
1624
|
#
|
1448
1625
|
# @example Request syntax with placeholder values
|
1449
1626
|
#
|
@@ -1454,33 +1631,34 @@ module Aws::Omics
|
|
1454
1631
|
#
|
1455
1632
|
# @example Response structure
|
1456
1633
|
#
|
1634
|
+
# resp.id #=> String
|
1457
1635
|
# resp.arn #=> String
|
1458
|
-
# resp.
|
1636
|
+
# resp.sequence_store_id #=> String
|
1637
|
+
# resp.subject_id #=> String
|
1638
|
+
# resp.sample_id #=> String
|
1639
|
+
# resp.status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "PROCESSING_UPLOAD", "UPLOAD_FAILED"
|
1640
|
+
# resp.name #=> String
|
1459
1641
|
# resp.description #=> String
|
1460
1642
|
# resp.file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
1461
|
-
# resp.
|
1462
|
-
# resp.
|
1463
|
-
# resp.
|
1464
|
-
# resp.
|
1465
|
-
# resp.
|
1643
|
+
# resp.creation_time #=> Time
|
1644
|
+
# resp.sequence_information.total_read_count #=> Integer
|
1645
|
+
# resp.sequence_information.total_base_count #=> Integer
|
1646
|
+
# resp.sequence_information.generated_from #=> String
|
1647
|
+
# resp.sequence_information.alignment #=> String
|
1648
|
+
# resp.reference_arn #=> String
|
1466
1649
|
# resp.files.source1.total_parts #=> Integer
|
1467
|
-
# resp.files.
|
1468
|
-
# resp.files.
|
1650
|
+
# resp.files.source1.part_size #=> Integer
|
1651
|
+
# resp.files.source1.content_length #=> Integer
|
1469
1652
|
# resp.files.source2.total_parts #=> Integer
|
1470
|
-
# resp.
|
1471
|
-
# resp.
|
1472
|
-
# resp.
|
1473
|
-
# resp.
|
1474
|
-
# resp.
|
1475
|
-
# resp.
|
1476
|
-
#
|
1477
|
-
#
|
1478
|
-
#
|
1479
|
-
# resp.status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED"
|
1480
|
-
# resp.subject_id #=> String
|
1481
|
-
#
|
1482
|
-
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetMetadata AWS API Documentation
|
1483
|
-
#
|
1653
|
+
# resp.files.source2.part_size #=> Integer
|
1654
|
+
# resp.files.source2.content_length #=> Integer
|
1655
|
+
# resp.files.index.total_parts #=> Integer
|
1656
|
+
# resp.files.index.part_size #=> Integer
|
1657
|
+
# resp.files.index.content_length #=> Integer
|
1658
|
+
# resp.status_message #=> String
|
1659
|
+
#
|
1660
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetMetadata AWS API Documentation
|
1661
|
+
#
|
1484
1662
|
# @overload get_read_set_metadata(params = {})
|
1485
1663
|
# @param [Hash] params ({})
|
1486
1664
|
def get_read_set_metadata(params = {}, options = {})
|
@@ -1490,20 +1668,20 @@ module Aws::Omics
|
|
1490
1668
|
|
1491
1669
|
# Gets a reference file.
|
1492
1670
|
#
|
1493
|
-
# @option params [String] :file
|
1494
|
-
# The file to retrieve.
|
1495
|
-
#
|
1496
1671
|
# @option params [required, String] :id
|
1497
1672
|
# The reference's ID.
|
1498
1673
|
#
|
1499
|
-
# @option params [required,
|
1500
|
-
# The
|
1674
|
+
# @option params [required, String] :reference_store_id
|
1675
|
+
# The reference's store ID.
|
1501
1676
|
#
|
1502
1677
|
# @option params [String] :range
|
1503
1678
|
# The range to retrieve.
|
1504
1679
|
#
|
1505
|
-
# @option params [required,
|
1506
|
-
# The
|
1680
|
+
# @option params [required, Integer] :part_number
|
1681
|
+
# The part number to retrieve.
|
1682
|
+
#
|
1683
|
+
# @option params [String] :file
|
1684
|
+
# The file to retrieve.
|
1507
1685
|
#
|
1508
1686
|
# @return [Types::GetReferenceResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1509
1687
|
#
|
@@ -1512,11 +1690,11 @@ module Aws::Omics
|
|
1512
1690
|
# @example Request syntax with placeholder values
|
1513
1691
|
#
|
1514
1692
|
# resp = client.get_reference({
|
1515
|
-
# file: "SOURCE", # accepts SOURCE, INDEX
|
1516
1693
|
# id: "ReferenceId", # required
|
1517
|
-
# part_number: 1, # required
|
1518
|
-
# range: "Range",
|
1519
1694
|
# reference_store_id: "ReferenceStoreId", # required
|
1695
|
+
# range: "Range",
|
1696
|
+
# part_number: 1, # required
|
1697
|
+
# file: "SOURCE", # accepts SOURCE, INDEX
|
1520
1698
|
# })
|
1521
1699
|
#
|
1522
1700
|
# @example Response structure
|
@@ -1542,14 +1720,14 @@ module Aws::Omics
|
|
1542
1720
|
#
|
1543
1721
|
# @return [Types::GetReferenceImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1544
1722
|
#
|
1545
|
-
# * {Types::GetReferenceImportJobResponse#completion_time #completion_time} => Time
|
1546
|
-
# * {Types::GetReferenceImportJobResponse#creation_time #creation_time} => Time
|
1547
1723
|
# * {Types::GetReferenceImportJobResponse#id #id} => String
|
1548
1724
|
# * {Types::GetReferenceImportJobResponse#reference_store_id #reference_store_id} => String
|
1549
1725
|
# * {Types::GetReferenceImportJobResponse#role_arn #role_arn} => String
|
1550
|
-
# * {Types::GetReferenceImportJobResponse#sources #sources} => Array<Types::ImportReferenceSourceItem>
|
1551
1726
|
# * {Types::GetReferenceImportJobResponse#status #status} => String
|
1552
1727
|
# * {Types::GetReferenceImportJobResponse#status_message #status_message} => String
|
1728
|
+
# * {Types::GetReferenceImportJobResponse#creation_time #creation_time} => Time
|
1729
|
+
# * {Types::GetReferenceImportJobResponse#completion_time #completion_time} => Time
|
1730
|
+
# * {Types::GetReferenceImportJobResponse#sources #sources} => Array<Types::ImportReferenceSourceItem>
|
1553
1731
|
#
|
1554
1732
|
# @example Request syntax with placeholder values
|
1555
1733
|
#
|
@@ -1560,21 +1738,21 @@ module Aws::Omics
|
|
1560
1738
|
#
|
1561
1739
|
# @example Response structure
|
1562
1740
|
#
|
1563
|
-
# resp.completion_time #=> Time
|
1564
|
-
# resp.creation_time #=> Time
|
1565
1741
|
# resp.id #=> String
|
1566
1742
|
# resp.reference_store_id #=> String
|
1567
1743
|
# resp.role_arn #=> String
|
1744
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1745
|
+
# resp.status_message #=> String
|
1746
|
+
# resp.creation_time #=> Time
|
1747
|
+
# resp.completion_time #=> Time
|
1568
1748
|
# resp.sources #=> Array
|
1569
|
-
# resp.sources[0].description #=> String
|
1570
|
-
# resp.sources[0].name #=> String
|
1571
1749
|
# resp.sources[0].source_file #=> String
|
1572
1750
|
# resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
|
1573
1751
|
# resp.sources[0].status_message #=> String
|
1752
|
+
# resp.sources[0].name #=> String
|
1753
|
+
# resp.sources[0].description #=> String
|
1574
1754
|
# resp.sources[0].tags #=> Hash
|
1575
1755
|
# resp.sources[0].tags["TagKey"] #=> String
|
1576
|
-
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1577
|
-
# resp.status_message #=> String
|
1578
1756
|
#
|
1579
1757
|
#
|
1580
1758
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1600,16 +1778,16 @@ module Aws::Omics
|
|
1600
1778
|
#
|
1601
1779
|
# @return [Types::GetReferenceMetadataResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1602
1780
|
#
|
1603
|
-
# * {Types::GetReferenceMetadataResponse#arn #arn} => String
|
1604
|
-
# * {Types::GetReferenceMetadataResponse#creation_time #creation_time} => Time
|
1605
|
-
# * {Types::GetReferenceMetadataResponse#description #description} => String
|
1606
|
-
# * {Types::GetReferenceMetadataResponse#files #files} => Types::ReferenceFiles
|
1607
1781
|
# * {Types::GetReferenceMetadataResponse#id #id} => String
|
1608
|
-
# * {Types::GetReferenceMetadataResponse#
|
1609
|
-
# * {Types::GetReferenceMetadataResponse#name #name} => String
|
1782
|
+
# * {Types::GetReferenceMetadataResponse#arn #arn} => String
|
1610
1783
|
# * {Types::GetReferenceMetadataResponse#reference_store_id #reference_store_id} => String
|
1784
|
+
# * {Types::GetReferenceMetadataResponse#md5 #md5} => String
|
1611
1785
|
# * {Types::GetReferenceMetadataResponse#status #status} => String
|
1786
|
+
# * {Types::GetReferenceMetadataResponse#name #name} => String
|
1787
|
+
# * {Types::GetReferenceMetadataResponse#description #description} => String
|
1788
|
+
# * {Types::GetReferenceMetadataResponse#creation_time #creation_time} => Time
|
1612
1789
|
# * {Types::GetReferenceMetadataResponse#update_time #update_time} => Time
|
1790
|
+
# * {Types::GetReferenceMetadataResponse#files #files} => Types::ReferenceFiles
|
1613
1791
|
#
|
1614
1792
|
# @example Request syntax with placeholder values
|
1615
1793
|
#
|
@@ -1620,21 +1798,21 @@ module Aws::Omics
|
|
1620
1798
|
#
|
1621
1799
|
# @example Response structure
|
1622
1800
|
#
|
1623
|
-
# resp.arn #=> String
|
1624
|
-
# resp.creation_time #=> Time
|
1625
|
-
# resp.description #=> String
|
1626
|
-
# resp.files.index.content_length #=> Integer
|
1627
|
-
# resp.files.index.part_size #=> Integer
|
1628
|
-
# resp.files.index.total_parts #=> Integer
|
1629
|
-
# resp.files.source.content_length #=> Integer
|
1630
|
-
# resp.files.source.part_size #=> Integer
|
1631
|
-
# resp.files.source.total_parts #=> Integer
|
1632
1801
|
# resp.id #=> String
|
1633
|
-
# resp.
|
1634
|
-
# resp.name #=> String
|
1802
|
+
# resp.arn #=> String
|
1635
1803
|
# resp.reference_store_id #=> String
|
1804
|
+
# resp.md5 #=> String
|
1636
1805
|
# resp.status #=> String, one of "ACTIVE", "DELETING", "DELETED"
|
1806
|
+
# resp.name #=> String
|
1807
|
+
# resp.description #=> String
|
1808
|
+
# resp.creation_time #=> Time
|
1637
1809
|
# resp.update_time #=> Time
|
1810
|
+
# resp.files.source.total_parts #=> Integer
|
1811
|
+
# resp.files.source.part_size #=> Integer
|
1812
|
+
# resp.files.source.content_length #=> Integer
|
1813
|
+
# resp.files.index.total_parts #=> Integer
|
1814
|
+
# resp.files.index.part_size #=> Integer
|
1815
|
+
# resp.files.index.content_length #=> Integer
|
1638
1816
|
#
|
1639
1817
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceMetadata AWS API Documentation
|
1640
1818
|
#
|
@@ -1652,12 +1830,12 @@ module Aws::Omics
|
|
1652
1830
|
#
|
1653
1831
|
# @return [Types::GetReferenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1654
1832
|
#
|
1655
|
-
# * {Types::GetReferenceStoreResponse#arn #arn} => String
|
1656
|
-
# * {Types::GetReferenceStoreResponse#creation_time #creation_time} => Time
|
1657
|
-
# * {Types::GetReferenceStoreResponse#description #description} => String
|
1658
1833
|
# * {Types::GetReferenceStoreResponse#id #id} => String
|
1834
|
+
# * {Types::GetReferenceStoreResponse#arn #arn} => String
|
1659
1835
|
# * {Types::GetReferenceStoreResponse#name #name} => String
|
1836
|
+
# * {Types::GetReferenceStoreResponse#description #description} => String
|
1660
1837
|
# * {Types::GetReferenceStoreResponse#sse_config #sse_config} => Types::SseConfig
|
1838
|
+
# * {Types::GetReferenceStoreResponse#creation_time #creation_time} => Time
|
1661
1839
|
#
|
1662
1840
|
# @example Request syntax with placeholder values
|
1663
1841
|
#
|
@@ -1667,13 +1845,13 @@ module Aws::Omics
|
|
1667
1845
|
#
|
1668
1846
|
# @example Response structure
|
1669
1847
|
#
|
1670
|
-
# resp.arn #=> String
|
1671
|
-
# resp.creation_time #=> Time
|
1672
|
-
# resp.description #=> String
|
1673
1848
|
# resp.id #=> String
|
1849
|
+
# resp.arn #=> String
|
1674
1850
|
# resp.name #=> String
|
1675
|
-
# resp.
|
1851
|
+
# resp.description #=> String
|
1676
1852
|
# resp.sse_config.type #=> String, one of "KMS"
|
1853
|
+
# resp.sse_config.key_arn #=> String
|
1854
|
+
# resp.creation_time #=> Time
|
1677
1855
|
#
|
1678
1856
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceStore AWS API Documentation
|
1679
1857
|
#
|
@@ -1686,71 +1864,73 @@ module Aws::Omics
|
|
1686
1864
|
|
1687
1865
|
# Gets information about a workflow run.
|
1688
1866
|
#
|
1689
|
-
# @option params [Array<String>] :export
|
1690
|
-
# The run's export format.
|
1691
|
-
#
|
1692
1867
|
# @option params [required, String] :id
|
1693
1868
|
# The run's ID.
|
1694
1869
|
#
|
1870
|
+
# @option params [Array<String>] :export
|
1871
|
+
# The run's export format.
|
1872
|
+
#
|
1695
1873
|
# @return [Types::GetRunResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1696
1874
|
#
|
1697
1875
|
# * {Types::GetRunResponse#arn #arn} => String
|
1698
|
-
# * {Types::GetRunResponse#creation_time #creation_time} => Time
|
1699
|
-
# * {Types::GetRunResponse#definition #definition} => String
|
1700
|
-
# * {Types::GetRunResponse#digest #digest} => String
|
1701
1876
|
# * {Types::GetRunResponse#id #id} => String
|
1702
|
-
# * {Types::GetRunResponse#
|
1877
|
+
# * {Types::GetRunResponse#status #status} => String
|
1878
|
+
# * {Types::GetRunResponse#workflow_id #workflow_id} => String
|
1879
|
+
# * {Types::GetRunResponse#workflow_type #workflow_type} => String
|
1880
|
+
# * {Types::GetRunResponse#run_id #run_id} => String
|
1881
|
+
# * {Types::GetRunResponse#role_arn #role_arn} => String
|
1703
1882
|
# * {Types::GetRunResponse#name #name} => String
|
1704
|
-
# * {Types::GetRunResponse#
|
1705
|
-
# * {Types::GetRunResponse#parameters #parameters} => Hash,Array,String,Numeric,Boolean
|
1883
|
+
# * {Types::GetRunResponse#run_group_id #run_group_id} => String
|
1706
1884
|
# * {Types::GetRunResponse#priority #priority} => Integer
|
1885
|
+
# * {Types::GetRunResponse#definition #definition} => String
|
1886
|
+
# * {Types::GetRunResponse#digest #digest} => String
|
1887
|
+
# * {Types::GetRunResponse#parameters #parameters} => Hash,Array,String,Numeric,Boolean
|
1888
|
+
# * {Types::GetRunResponse#storage_capacity #storage_capacity} => Integer
|
1889
|
+
# * {Types::GetRunResponse#output_uri #output_uri} => String
|
1890
|
+
# * {Types::GetRunResponse#log_level #log_level} => String
|
1707
1891
|
# * {Types::GetRunResponse#resource_digests #resource_digests} => Hash<String,String>
|
1708
|
-
# * {Types::GetRunResponse#role_arn #role_arn} => String
|
1709
|
-
# * {Types::GetRunResponse#run_group_id #run_group_id} => String
|
1710
|
-
# * {Types::GetRunResponse#run_id #run_id} => String
|
1711
|
-
# * {Types::GetRunResponse#start_time #start_time} => Time
|
1712
1892
|
# * {Types::GetRunResponse#started_by #started_by} => String
|
1713
|
-
# * {Types::GetRunResponse#
|
1714
|
-
# * {Types::GetRunResponse#
|
1893
|
+
# * {Types::GetRunResponse#creation_time #creation_time} => Time
|
1894
|
+
# * {Types::GetRunResponse#start_time #start_time} => Time
|
1715
1895
|
# * {Types::GetRunResponse#stop_time #stop_time} => Time
|
1716
|
-
# * {Types::GetRunResponse#
|
1896
|
+
# * {Types::GetRunResponse#status_message #status_message} => String
|
1717
1897
|
# * {Types::GetRunResponse#tags #tags} => Hash<String,String>
|
1718
|
-
# * {Types::GetRunResponse#
|
1719
|
-
# * {Types::GetRunResponse#workflow_type #workflow_type} => String
|
1898
|
+
# * {Types::GetRunResponse#accelerators #accelerators} => String
|
1720
1899
|
#
|
1721
1900
|
# @example Request syntax with placeholder values
|
1722
1901
|
#
|
1723
1902
|
# resp = client.get_run({
|
1724
|
-
# export: ["DEFINITION"], # accepts DEFINITION
|
1725
1903
|
# id: "RunId", # required
|
1904
|
+
# export: ["DEFINITION"], # accepts DEFINITION
|
1726
1905
|
# })
|
1727
1906
|
#
|
1728
1907
|
# @example Response structure
|
1729
1908
|
#
|
1730
1909
|
# resp.arn #=> String
|
1731
|
-
# resp.creation_time #=> Time
|
1732
|
-
# resp.definition #=> String
|
1733
|
-
# resp.digest #=> String
|
1734
1910
|
# resp.id #=> String
|
1735
|
-
# resp.
|
1911
|
+
# resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
|
1912
|
+
# resp.workflow_id #=> String
|
1913
|
+
# resp.workflow_type #=> String, one of "PRIVATE", "READY2RUN"
|
1914
|
+
# resp.run_id #=> String
|
1915
|
+
# resp.role_arn #=> String
|
1736
1916
|
# resp.name #=> String
|
1737
|
-
# resp.
|
1917
|
+
# resp.run_group_id #=> String
|
1738
1918
|
# resp.priority #=> Integer
|
1919
|
+
# resp.definition #=> String
|
1920
|
+
# resp.digest #=> String
|
1921
|
+
# resp.storage_capacity #=> Integer
|
1922
|
+
# resp.output_uri #=> String
|
1923
|
+
# resp.log_level #=> String, one of "OFF", "FATAL", "ERROR", "ALL"
|
1739
1924
|
# resp.resource_digests #=> Hash
|
1740
1925
|
# resp.resource_digests["RunResourceDigestKey"] #=> String
|
1741
|
-
# resp.role_arn #=> String
|
1742
|
-
# resp.run_group_id #=> String
|
1743
|
-
# resp.run_id #=> String
|
1744
|
-
# resp.start_time #=> Time
|
1745
1926
|
# resp.started_by #=> String
|
1746
|
-
# resp.
|
1747
|
-
# resp.
|
1927
|
+
# resp.creation_time #=> Time
|
1928
|
+
# resp.start_time #=> Time
|
1748
1929
|
# resp.stop_time #=> Time
|
1749
|
-
# resp.
|
1930
|
+
# resp.status_message #=> String
|
1750
1931
|
# resp.tags #=> Hash
|
1751
1932
|
# resp.tags["TagKey"] #=> String
|
1752
|
-
# resp.
|
1753
|
-
# resp.workflow_type #=> String, one of "PRIVATE"
|
1933
|
+
# resp.accelerators #=> String, one of "GPU"
|
1754
1934
|
#
|
1755
1935
|
#
|
1756
1936
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1775,13 +1955,14 @@ module Aws::Omics
|
|
1775
1955
|
# @return [Types::GetRunGroupResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1776
1956
|
#
|
1777
1957
|
# * {Types::GetRunGroupResponse#arn #arn} => String
|
1778
|
-
# * {Types::GetRunGroupResponse#creation_time #creation_time} => Time
|
1779
1958
|
# * {Types::GetRunGroupResponse#id #id} => String
|
1959
|
+
# * {Types::GetRunGroupResponse#name #name} => String
|
1780
1960
|
# * {Types::GetRunGroupResponse#max_cpus #max_cpus} => Integer
|
1781
|
-
# * {Types::GetRunGroupResponse#max_duration #max_duration} => Integer
|
1782
1961
|
# * {Types::GetRunGroupResponse#max_runs #max_runs} => Integer
|
1783
|
-
# * {Types::GetRunGroupResponse#
|
1962
|
+
# * {Types::GetRunGroupResponse#max_duration #max_duration} => Integer
|
1963
|
+
# * {Types::GetRunGroupResponse#creation_time #creation_time} => Time
|
1784
1964
|
# * {Types::GetRunGroupResponse#tags #tags} => Hash<String,String>
|
1965
|
+
# * {Types::GetRunGroupResponse#max_gpus #max_gpus} => Integer
|
1785
1966
|
#
|
1786
1967
|
# @example Request syntax with placeholder values
|
1787
1968
|
#
|
@@ -1792,14 +1973,15 @@ module Aws::Omics
|
|
1792
1973
|
# @example Response structure
|
1793
1974
|
#
|
1794
1975
|
# resp.arn #=> String
|
1795
|
-
# resp.creation_time #=> Time
|
1796
1976
|
# resp.id #=> String
|
1977
|
+
# resp.name #=> String
|
1797
1978
|
# resp.max_cpus #=> Integer
|
1798
|
-
# resp.max_duration #=> Integer
|
1799
1979
|
# resp.max_runs #=> Integer
|
1800
|
-
# resp.
|
1980
|
+
# resp.max_duration #=> Integer
|
1981
|
+
# resp.creation_time #=> Time
|
1801
1982
|
# resp.tags #=> Hash
|
1802
1983
|
# resp.tags["TagKey"] #=> String
|
1984
|
+
# resp.max_gpus #=> Integer
|
1803
1985
|
#
|
1804
1986
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetRunGroup AWS API Documentation
|
1805
1987
|
#
|
@@ -1820,16 +2002,17 @@ module Aws::Omics
|
|
1820
2002
|
#
|
1821
2003
|
# @return [Types::GetRunTaskResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1822
2004
|
#
|
2005
|
+
# * {Types::GetRunTaskResponse#task_id #task_id} => String
|
2006
|
+
# * {Types::GetRunTaskResponse#status #status} => String
|
2007
|
+
# * {Types::GetRunTaskResponse#name #name} => String
|
1823
2008
|
# * {Types::GetRunTaskResponse#cpus #cpus} => Integer
|
1824
|
-
# * {Types::GetRunTaskResponse#creation_time #creation_time} => Time
|
1825
|
-
# * {Types::GetRunTaskResponse#log_stream #log_stream} => String
|
1826
2009
|
# * {Types::GetRunTaskResponse#memory #memory} => Integer
|
1827
|
-
# * {Types::GetRunTaskResponse#
|
2010
|
+
# * {Types::GetRunTaskResponse#creation_time #creation_time} => Time
|
1828
2011
|
# * {Types::GetRunTaskResponse#start_time #start_time} => Time
|
1829
|
-
# * {Types::GetRunTaskResponse#status #status} => String
|
1830
|
-
# * {Types::GetRunTaskResponse#status_message #status_message} => String
|
1831
2012
|
# * {Types::GetRunTaskResponse#stop_time #stop_time} => Time
|
1832
|
-
# * {Types::GetRunTaskResponse#
|
2013
|
+
# * {Types::GetRunTaskResponse#status_message #status_message} => String
|
2014
|
+
# * {Types::GetRunTaskResponse#log_stream #log_stream} => String
|
2015
|
+
# * {Types::GetRunTaskResponse#gpus #gpus} => Integer
|
1833
2016
|
#
|
1834
2017
|
# @example Request syntax with placeholder values
|
1835
2018
|
#
|
@@ -1840,16 +2023,17 @@ module Aws::Omics
|
|
1840
2023
|
#
|
1841
2024
|
# @example Response structure
|
1842
2025
|
#
|
2026
|
+
# resp.task_id #=> String
|
2027
|
+
# resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
|
2028
|
+
# resp.name #=> String
|
1843
2029
|
# resp.cpus #=> Integer
|
1844
|
-
# resp.creation_time #=> Time
|
1845
|
-
# resp.log_stream #=> String
|
1846
2030
|
# resp.memory #=> Integer
|
1847
|
-
# resp.
|
2031
|
+
# resp.creation_time #=> Time
|
1848
2032
|
# resp.start_time #=> Time
|
1849
|
-
# resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
|
1850
|
-
# resp.status_message #=> String
|
1851
2033
|
# resp.stop_time #=> Time
|
1852
|
-
# resp.
|
2034
|
+
# resp.status_message #=> String
|
2035
|
+
# resp.log_stream #=> String
|
2036
|
+
# resp.gpus #=> Integer
|
1853
2037
|
#
|
1854
2038
|
#
|
1855
2039
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1873,12 +2057,13 @@ module Aws::Omics
|
|
1873
2057
|
#
|
1874
2058
|
# @return [Types::GetSequenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1875
2059
|
#
|
1876
|
-
# * {Types::GetSequenceStoreResponse#arn #arn} => String
|
1877
|
-
# * {Types::GetSequenceStoreResponse#creation_time #creation_time} => Time
|
1878
|
-
# * {Types::GetSequenceStoreResponse#description #description} => String
|
1879
2060
|
# * {Types::GetSequenceStoreResponse#id #id} => String
|
2061
|
+
# * {Types::GetSequenceStoreResponse#arn #arn} => String
|
1880
2062
|
# * {Types::GetSequenceStoreResponse#name #name} => String
|
2063
|
+
# * {Types::GetSequenceStoreResponse#description #description} => String
|
1881
2064
|
# * {Types::GetSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig
|
2065
|
+
# * {Types::GetSequenceStoreResponse#creation_time #creation_time} => Time
|
2066
|
+
# * {Types::GetSequenceStoreResponse#fallback_location #fallback_location} => String
|
1882
2067
|
#
|
1883
2068
|
# @example Request syntax with placeholder values
|
1884
2069
|
#
|
@@ -1888,13 +2073,14 @@ module Aws::Omics
|
|
1888
2073
|
#
|
1889
2074
|
# @example Response structure
|
1890
2075
|
#
|
1891
|
-
# resp.arn #=> String
|
1892
|
-
# resp.creation_time #=> Time
|
1893
|
-
# resp.description #=> String
|
1894
2076
|
# resp.id #=> String
|
2077
|
+
# resp.arn #=> String
|
1895
2078
|
# resp.name #=> String
|
1896
|
-
# resp.
|
2079
|
+
# resp.description #=> String
|
1897
2080
|
# resp.sse_config.type #=> String, one of "KMS"
|
2081
|
+
# resp.sse_config.key_arn #=> String
|
2082
|
+
# resp.creation_time #=> Time
|
2083
|
+
# resp.fallback_location #=> String
|
1898
2084
|
#
|
1899
2085
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetSequenceStore AWS API Documentation
|
1900
2086
|
#
|
@@ -1912,16 +2098,17 @@ module Aws::Omics
|
|
1912
2098
|
#
|
1913
2099
|
# @return [Types::GetVariantImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1914
2100
|
#
|
1915
|
-
# * {Types::GetVariantImportResponse#completion_time #completion_time} => Time
|
1916
|
-
# * {Types::GetVariantImportResponse#creation_time #creation_time} => Time
|
1917
|
-
# * {Types::GetVariantImportResponse#destination_name #destination_name} => String
|
1918
2101
|
# * {Types::GetVariantImportResponse#id #id} => String
|
1919
|
-
# * {Types::GetVariantImportResponse#
|
2102
|
+
# * {Types::GetVariantImportResponse#destination_name #destination_name} => String
|
1920
2103
|
# * {Types::GetVariantImportResponse#role_arn #role_arn} => String
|
1921
|
-
# * {Types::GetVariantImportResponse#run_left_normalization #run_left_normalization} => Boolean
|
1922
2104
|
# * {Types::GetVariantImportResponse#status #status} => String
|
1923
2105
|
# * {Types::GetVariantImportResponse#status_message #status_message} => String
|
2106
|
+
# * {Types::GetVariantImportResponse#creation_time #creation_time} => Time
|
1924
2107
|
# * {Types::GetVariantImportResponse#update_time #update_time} => Time
|
2108
|
+
# * {Types::GetVariantImportResponse#completion_time #completion_time} => Time
|
2109
|
+
# * {Types::GetVariantImportResponse#items #items} => Array<Types::VariantImportItemDetail>
|
2110
|
+
# * {Types::GetVariantImportResponse#run_left_normalization #run_left_normalization} => Boolean
|
2111
|
+
# * {Types::GetVariantImportResponse#annotation_fields #annotation_fields} => Hash<String,String>
|
1925
2112
|
#
|
1926
2113
|
# @example Request syntax with placeholder values
|
1927
2114
|
#
|
@@ -1931,19 +2118,21 @@ module Aws::Omics
|
|
1931
2118
|
#
|
1932
2119
|
# @example Response structure
|
1933
2120
|
#
|
1934
|
-
# resp.completion_time #=> Time
|
1935
|
-
# resp.creation_time #=> Time
|
1936
|
-
# resp.destination_name #=> String
|
1937
2121
|
# resp.id #=> String
|
1938
|
-
# resp.
|
1939
|
-
# resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
1940
|
-
# resp.items[0].source #=> String
|
1941
|
-
# resp.items[0].status_message #=> String
|
2122
|
+
# resp.destination_name #=> String
|
1942
2123
|
# resp.role_arn #=> String
|
1943
|
-
# resp.run_left_normalization #=> Boolean
|
1944
2124
|
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
1945
2125
|
# resp.status_message #=> String
|
2126
|
+
# resp.creation_time #=> Time
|
1946
2127
|
# resp.update_time #=> Time
|
2128
|
+
# resp.completion_time #=> Time
|
2129
|
+
# resp.items #=> Array
|
2130
|
+
# resp.items[0].source #=> String
|
2131
|
+
# resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
2132
|
+
# resp.items[0].status_message #=> String
|
2133
|
+
# resp.run_left_normalization #=> Boolean
|
2134
|
+
# resp.annotation_fields #=> Hash
|
2135
|
+
# resp.annotation_fields["AnnotationFieldMapKeyString"] #=> String
|
1947
2136
|
#
|
1948
2137
|
#
|
1949
2138
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1966,18 +2155,18 @@ module Aws::Omics
|
|
1966
2155
|
#
|
1967
2156
|
# @return [Types::GetVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1968
2157
|
#
|
1969
|
-
# * {Types::GetVariantStoreResponse#creation_time #creation_time} => Time
|
1970
|
-
# * {Types::GetVariantStoreResponse#description #description} => String
|
1971
2158
|
# * {Types::GetVariantStoreResponse#id #id} => String
|
1972
|
-
# * {Types::GetVariantStoreResponse#name #name} => String
|
1973
2159
|
# * {Types::GetVariantStoreResponse#reference #reference} => Types::ReferenceItem
|
1974
|
-
# * {Types::GetVariantStoreResponse#sse_config #sse_config} => Types::SseConfig
|
1975
2160
|
# * {Types::GetVariantStoreResponse#status #status} => String
|
1976
|
-
# * {Types::GetVariantStoreResponse#status_message #status_message} => String
|
1977
2161
|
# * {Types::GetVariantStoreResponse#store_arn #store_arn} => String
|
1978
|
-
# * {Types::GetVariantStoreResponse#
|
1979
|
-
# * {Types::GetVariantStoreResponse#
|
2162
|
+
# * {Types::GetVariantStoreResponse#name #name} => String
|
2163
|
+
# * {Types::GetVariantStoreResponse#description #description} => String
|
2164
|
+
# * {Types::GetVariantStoreResponse#sse_config #sse_config} => Types::SseConfig
|
2165
|
+
# * {Types::GetVariantStoreResponse#creation_time #creation_time} => Time
|
1980
2166
|
# * {Types::GetVariantStoreResponse#update_time #update_time} => Time
|
2167
|
+
# * {Types::GetVariantStoreResponse#tags #tags} => Hash<String,String>
|
2168
|
+
# * {Types::GetVariantStoreResponse#status_message #status_message} => String
|
2169
|
+
# * {Types::GetVariantStoreResponse#store_size_bytes #store_size_bytes} => Integer
|
1981
2170
|
#
|
1982
2171
|
# @example Request syntax with placeholder values
|
1983
2172
|
#
|
@@ -1987,20 +2176,20 @@ module Aws::Omics
|
|
1987
2176
|
#
|
1988
2177
|
# @example Response structure
|
1989
2178
|
#
|
1990
|
-
# resp.creation_time #=> Time
|
1991
|
-
# resp.description #=> String
|
1992
2179
|
# resp.id #=> String
|
1993
|
-
# resp.name #=> String
|
1994
2180
|
# resp.reference.reference_arn #=> String
|
1995
|
-
# resp.sse_config.key_arn #=> String
|
1996
|
-
# resp.sse_config.type #=> String, one of "KMS"
|
1997
2181
|
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
1998
|
-
# resp.status_message #=> String
|
1999
2182
|
# resp.store_arn #=> String
|
2000
|
-
# resp.
|
2183
|
+
# resp.name #=> String
|
2184
|
+
# resp.description #=> String
|
2185
|
+
# resp.sse_config.type #=> String, one of "KMS"
|
2186
|
+
# resp.sse_config.key_arn #=> String
|
2187
|
+
# resp.creation_time #=> Time
|
2188
|
+
# resp.update_time #=> Time
|
2001
2189
|
# resp.tags #=> Hash
|
2002
2190
|
# resp.tags["TagKey"] #=> String
|
2003
|
-
# resp.
|
2191
|
+
# resp.status_message #=> String
|
2192
|
+
# resp.store_size_bytes #=> Integer
|
2004
2193
|
#
|
2005
2194
|
#
|
2006
2195
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -2019,61 +2208,66 @@ module Aws::Omics
|
|
2019
2208
|
|
2020
2209
|
# Gets information about a workflow.
|
2021
2210
|
#
|
2022
|
-
# @option params [Array<String>] :export
|
2023
|
-
# The export format for the workflow.
|
2024
|
-
#
|
2025
2211
|
# @option params [required, String] :id
|
2026
2212
|
# The workflow's ID.
|
2027
2213
|
#
|
2028
2214
|
# @option params [String] :type
|
2029
2215
|
# The workflow's type.
|
2030
2216
|
#
|
2217
|
+
# @option params [Array<String>] :export
|
2218
|
+
# The export format for the workflow.
|
2219
|
+
#
|
2031
2220
|
# @return [Types::GetWorkflowResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2032
2221
|
#
|
2033
2222
|
# * {Types::GetWorkflowResponse#arn #arn} => String
|
2034
|
-
# * {Types::GetWorkflowResponse#
|
2035
|
-
# * {Types::GetWorkflowResponse#
|
2223
|
+
# * {Types::GetWorkflowResponse#id #id} => String
|
2224
|
+
# * {Types::GetWorkflowResponse#status #status} => String
|
2225
|
+
# * {Types::GetWorkflowResponse#type #type} => String
|
2226
|
+
# * {Types::GetWorkflowResponse#name #name} => String
|
2036
2227
|
# * {Types::GetWorkflowResponse#description #description} => String
|
2037
|
-
# * {Types::GetWorkflowResponse#digest #digest} => String
|
2038
2228
|
# * {Types::GetWorkflowResponse#engine #engine} => String
|
2039
|
-
# * {Types::GetWorkflowResponse#
|
2229
|
+
# * {Types::GetWorkflowResponse#definition #definition} => String
|
2040
2230
|
# * {Types::GetWorkflowResponse#main #main} => String
|
2041
|
-
# * {Types::GetWorkflowResponse#
|
2231
|
+
# * {Types::GetWorkflowResponse#digest #digest} => String
|
2042
2232
|
# * {Types::GetWorkflowResponse#parameter_template #parameter_template} => Hash<String,Types::WorkflowParameter>
|
2043
|
-
# * {Types::GetWorkflowResponse#status #status} => String
|
2044
|
-
# * {Types::GetWorkflowResponse#status_message #status_message} => String
|
2045
2233
|
# * {Types::GetWorkflowResponse#storage_capacity #storage_capacity} => Integer
|
2234
|
+
# * {Types::GetWorkflowResponse#creation_time #creation_time} => Time
|
2235
|
+
# * {Types::GetWorkflowResponse#status_message #status_message} => String
|
2046
2236
|
# * {Types::GetWorkflowResponse#tags #tags} => Hash<String,String>
|
2047
|
-
# * {Types::GetWorkflowResponse#
|
2237
|
+
# * {Types::GetWorkflowResponse#metadata #metadata} => Hash<String,String>
|
2238
|
+
# * {Types::GetWorkflowResponse#accelerators #accelerators} => String
|
2048
2239
|
#
|
2049
2240
|
# @example Request syntax with placeholder values
|
2050
2241
|
#
|
2051
2242
|
# resp = client.get_workflow({
|
2052
|
-
# export: ["DEFINITION"], # accepts DEFINITION
|
2053
2243
|
# id: "WorkflowId", # required
|
2054
|
-
# type: "PRIVATE", # accepts PRIVATE
|
2244
|
+
# type: "PRIVATE", # accepts PRIVATE, READY2RUN
|
2245
|
+
# export: ["DEFINITION"], # accepts DEFINITION
|
2055
2246
|
# })
|
2056
2247
|
#
|
2057
2248
|
# @example Response structure
|
2058
2249
|
#
|
2059
2250
|
# resp.arn #=> String
|
2060
|
-
# resp.
|
2061
|
-
# resp.
|
2251
|
+
# resp.id #=> String
|
2252
|
+
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
|
2253
|
+
# resp.type #=> String, one of "PRIVATE", "READY2RUN"
|
2254
|
+
# resp.name #=> String
|
2062
2255
|
# resp.description #=> String
|
2063
|
-
# resp.digest #=> String
|
2064
2256
|
# resp.engine #=> String, one of "WDL", "NEXTFLOW"
|
2065
|
-
# resp.
|
2257
|
+
# resp.definition #=> String
|
2066
2258
|
# resp.main #=> String
|
2067
|
-
# resp.
|
2259
|
+
# resp.digest #=> String
|
2068
2260
|
# resp.parameter_template #=> Hash
|
2069
2261
|
# resp.parameter_template["WorkflowParameterName"].description #=> String
|
2070
2262
|
# resp.parameter_template["WorkflowParameterName"].optional #=> Boolean
|
2071
|
-
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
|
2072
|
-
# resp.status_message #=> String
|
2073
2263
|
# resp.storage_capacity #=> Integer
|
2264
|
+
# resp.creation_time #=> Time
|
2265
|
+
# resp.status_message #=> String
|
2074
2266
|
# resp.tags #=> Hash
|
2075
2267
|
# resp.tags["TagKey"] #=> String
|
2076
|
-
# resp.
|
2268
|
+
# resp.metadata #=> Hash
|
2269
|
+
# resp.metadata["WorkflowMetadataKey"] #=> String
|
2270
|
+
# resp.accelerators #=> String, one of "GPU"
|
2077
2271
|
#
|
2078
2272
|
#
|
2079
2273
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -2091,19 +2285,19 @@ module Aws::Omics
|
|
2091
2285
|
|
2092
2286
|
# Retrieves a list of annotation import jobs.
|
2093
2287
|
#
|
2094
|
-
# @option params [
|
2095
|
-
#
|
2288
|
+
# @option params [Integer] :max_results
|
2289
|
+
# The maximum number of jobs to return in one page of results.
|
2096
2290
|
#
|
2097
2291
|
# @option params [Array<String>] :ids
|
2098
2292
|
# IDs of annotation import jobs to retrieve.
|
2099
2293
|
#
|
2100
|
-
# @option params [Integer] :max_results
|
2101
|
-
# The maximum number of jobs to return in one page of results.
|
2102
|
-
#
|
2103
2294
|
# @option params [String] :next_token
|
2104
2295
|
# Specify the pagination token from a previous request to retrieve the
|
2105
2296
|
# next page of results.
|
2106
2297
|
#
|
2298
|
+
# @option params [Types::ListAnnotationImportJobsFilter] :filter
|
2299
|
+
# A filter to apply to the list.
|
2300
|
+
#
|
2107
2301
|
# @return [Types::ListAnnotationImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2108
2302
|
#
|
2109
2303
|
# * {Types::ListAnnotationImportJobsResponse#annotation_import_jobs #annotation_import_jobs} => Array<Types::AnnotationImportJobItem>
|
@@ -2114,26 +2308,28 @@ module Aws::Omics
|
|
2114
2308
|
# @example Request syntax with placeholder values
|
2115
2309
|
#
|
2116
2310
|
# resp = client.list_annotation_import_jobs({
|
2311
|
+
# max_results: 1,
|
2312
|
+
# ids: ["ResourceIdentifier"],
|
2313
|
+
# next_token: "ListAnnotationImportJobsRequestNextTokenString",
|
2117
2314
|
# filter: {
|
2118
2315
|
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED, COMPLETED_WITH_FAILURES
|
2119
2316
|
# store_name: "String",
|
2120
2317
|
# },
|
2121
|
-
# ids: ["ResourceIdentifier"],
|
2122
|
-
# max_results: 1,
|
2123
|
-
# next_token: "ListAnnotationImportJobsRequestNextTokenString",
|
2124
2318
|
# })
|
2125
2319
|
#
|
2126
2320
|
# @example Response structure
|
2127
2321
|
#
|
2128
2322
|
# resp.annotation_import_jobs #=> Array
|
2129
|
-
# resp.annotation_import_jobs[0].completion_time #=> Time
|
2130
|
-
# resp.annotation_import_jobs[0].creation_time #=> Time
|
2131
|
-
# resp.annotation_import_jobs[0].destination_name #=> String
|
2132
2323
|
# resp.annotation_import_jobs[0].id #=> String
|
2324
|
+
# resp.annotation_import_jobs[0].destination_name #=> String
|
2133
2325
|
# resp.annotation_import_jobs[0].role_arn #=> String
|
2134
|
-
# resp.annotation_import_jobs[0].run_left_normalization #=> Boolean
|
2135
2326
|
# resp.annotation_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
2327
|
+
# resp.annotation_import_jobs[0].creation_time #=> Time
|
2136
2328
|
# resp.annotation_import_jobs[0].update_time #=> Time
|
2329
|
+
# resp.annotation_import_jobs[0].completion_time #=> Time
|
2330
|
+
# resp.annotation_import_jobs[0].run_left_normalization #=> Boolean
|
2331
|
+
# resp.annotation_import_jobs[0].annotation_fields #=> Hash
|
2332
|
+
# resp.annotation_import_jobs[0].annotation_fields["AnnotationFieldMapKeyString"] #=> String
|
2137
2333
|
# resp.next_token #=> String
|
2138
2334
|
#
|
2139
2335
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationImportJobs AWS API Documentation
|
@@ -2147,9 +2343,6 @@ module Aws::Omics
|
|
2147
2343
|
|
2148
2344
|
# Retrieves a list of annotation stores.
|
2149
2345
|
#
|
2150
|
-
# @option params [Types::ListAnnotationStoresFilter] :filter
|
2151
|
-
# A filter to apply to the list.
|
2152
|
-
#
|
2153
2346
|
# @option params [Array<String>] :ids
|
2154
2347
|
# IDs of stores to list.
|
2155
2348
|
#
|
@@ -2160,6 +2353,9 @@ module Aws::Omics
|
|
2160
2353
|
# Specify the pagination token from a previous request to retrieve the
|
2161
2354
|
# next page of results.
|
2162
2355
|
#
|
2356
|
+
# @option params [Types::ListAnnotationStoresFilter] :filter
|
2357
|
+
# A filter to apply to the list.
|
2358
|
+
#
|
2163
2359
|
# @return [Types::ListAnnotationStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2164
2360
|
#
|
2165
2361
|
# * {Types::ListAnnotationStoresResponse#annotation_stores #annotation_stores} => Array<Types::AnnotationStoreItem>
|
@@ -2170,30 +2366,30 @@ module Aws::Omics
|
|
2170
2366
|
# @example Request syntax with placeholder values
|
2171
2367
|
#
|
2172
2368
|
# resp = client.list_annotation_stores({
|
2173
|
-
# filter: {
|
2174
|
-
# status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
|
2175
|
-
# },
|
2176
2369
|
# ids: ["ResourceIdentifier"],
|
2177
2370
|
# max_results: 1,
|
2178
2371
|
# next_token: "ListAnnotationStoresRequestNextTokenString",
|
2372
|
+
# filter: {
|
2373
|
+
# status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
|
2374
|
+
# },
|
2179
2375
|
# })
|
2180
2376
|
#
|
2181
2377
|
# @example Response structure
|
2182
2378
|
#
|
2183
2379
|
# resp.annotation_stores #=> Array
|
2184
|
-
# resp.annotation_stores[0].creation_time #=> Time
|
2185
|
-
# resp.annotation_stores[0].description #=> String
|
2186
2380
|
# resp.annotation_stores[0].id #=> String
|
2187
|
-
# resp.annotation_stores[0].name #=> String
|
2188
2381
|
# resp.annotation_stores[0].reference.reference_arn #=> String
|
2189
|
-
# resp.annotation_stores[0].sse_config.key_arn #=> String
|
2190
|
-
# resp.annotation_stores[0].sse_config.type #=> String, one of "KMS"
|
2191
2382
|
# resp.annotation_stores[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
2192
|
-
# resp.annotation_stores[0].status_message #=> String
|
2193
2383
|
# resp.annotation_stores[0].store_arn #=> String
|
2384
|
+
# resp.annotation_stores[0].name #=> String
|
2194
2385
|
# resp.annotation_stores[0].store_format #=> String, one of "GFF", "TSV", "VCF"
|
2195
|
-
# resp.annotation_stores[0].
|
2386
|
+
# resp.annotation_stores[0].description #=> String
|
2387
|
+
# resp.annotation_stores[0].sse_config.type #=> String, one of "KMS"
|
2388
|
+
# resp.annotation_stores[0].sse_config.key_arn #=> String
|
2389
|
+
# resp.annotation_stores[0].creation_time #=> Time
|
2196
2390
|
# resp.annotation_stores[0].update_time #=> Time
|
2391
|
+
# resp.annotation_stores[0].status_message #=> String
|
2392
|
+
# resp.annotation_stores[0].store_size_bytes #=> Integer
|
2197
2393
|
# resp.next_token #=> String
|
2198
2394
|
#
|
2199
2395
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationStores AWS API Documentation
|
@@ -2205,10 +2401,64 @@ module Aws::Omics
|
|
2205
2401
|
req.send_request(options)
|
2206
2402
|
end
|
2207
2403
|
|
2404
|
+
# Lists all multipart read set uploads and their statuses.
|
2405
|
+
#
|
2406
|
+
# @option params [required, String] :sequence_store_id
|
2407
|
+
# The Sequence Store ID used for the multipart uploads.
|
2408
|
+
#
|
2409
|
+
# @option params [Integer] :max_results
|
2410
|
+
# The maximum number of multipart uploads returned in a page.
|
2411
|
+
#
|
2412
|
+
# @option params [String] :next_token
|
2413
|
+
# Next token returned in the response of a previous
|
2414
|
+
# ListMultipartReadSetUploads call. Used to get the next page of
|
2415
|
+
# results.
|
2416
|
+
#
|
2417
|
+
# @return [Types::ListMultipartReadSetUploadsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2418
|
+
#
|
2419
|
+
# * {Types::ListMultipartReadSetUploadsResponse#next_token #next_token} => String
|
2420
|
+
# * {Types::ListMultipartReadSetUploadsResponse#uploads #uploads} => Array<Types::MultipartReadSetUploadListItem>
|
2421
|
+
#
|
2422
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2423
|
+
#
|
2424
|
+
# @example Request syntax with placeholder values
|
2425
|
+
#
|
2426
|
+
# resp = client.list_multipart_read_set_uploads({
|
2427
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2428
|
+
# max_results: 1,
|
2429
|
+
# next_token: "NextToken",
|
2430
|
+
# })
|
2431
|
+
#
|
2432
|
+
# @example Response structure
|
2433
|
+
#
|
2434
|
+
# resp.next_token #=> String
|
2435
|
+
# resp.uploads #=> Array
|
2436
|
+
# resp.uploads[0].sequence_store_id #=> String
|
2437
|
+
# resp.uploads[0].upload_id #=> String
|
2438
|
+
# resp.uploads[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
2439
|
+
# resp.uploads[0].subject_id #=> String
|
2440
|
+
# resp.uploads[0].sample_id #=> String
|
2441
|
+
# resp.uploads[0].generated_from #=> String
|
2442
|
+
# resp.uploads[0].reference_arn #=> String
|
2443
|
+
# resp.uploads[0].name #=> String
|
2444
|
+
# resp.uploads[0].description #=> String
|
2445
|
+
# resp.uploads[0].tags #=> Hash
|
2446
|
+
# resp.uploads[0].tags["TagKey"] #=> String
|
2447
|
+
# resp.uploads[0].creation_time #=> Time
|
2448
|
+
#
|
2449
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListMultipartReadSetUploads AWS API Documentation
|
2450
|
+
#
|
2451
|
+
# @overload list_multipart_read_set_uploads(params = {})
|
2452
|
+
# @param [Hash] params ({})
|
2453
|
+
def list_multipart_read_set_uploads(params = {}, options = {})
|
2454
|
+
req = build_request(:list_multipart_read_set_uploads, params)
|
2455
|
+
req.send_request(options)
|
2456
|
+
end
|
2457
|
+
|
2208
2458
|
# Retrieves a list of read set activation jobs.
|
2209
2459
|
#
|
2210
|
-
# @option params [
|
2211
|
-
#
|
2460
|
+
# @option params [required, String] :sequence_store_id
|
2461
|
+
# The read set's sequence store ID.
|
2212
2462
|
#
|
2213
2463
|
# @option params [Integer] :max_results
|
2214
2464
|
# The maximum number of read set activation jobs to return in one page
|
@@ -2218,38 +2468,38 @@ module Aws::Omics
|
|
2218
2468
|
# Specify the pagination token from a previous request to retrieve the
|
2219
2469
|
# next page of results.
|
2220
2470
|
#
|
2221
|
-
# @option params [
|
2222
|
-
#
|
2471
|
+
# @option params [Types::ActivateReadSetFilter] :filter
|
2472
|
+
# A filter to apply to the list.
|
2223
2473
|
#
|
2224
2474
|
# @return [Types::ListReadSetActivationJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2225
2475
|
#
|
2226
|
-
# * {Types::ListReadSetActivationJobsResponse#activation_jobs #activation_jobs} => Array<Types::ActivateReadSetJobItem>
|
2227
2476
|
# * {Types::ListReadSetActivationJobsResponse#next_token #next_token} => String
|
2477
|
+
# * {Types::ListReadSetActivationJobsResponse#activation_jobs #activation_jobs} => Array<Types::ActivateReadSetJobItem>
|
2228
2478
|
#
|
2229
2479
|
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2230
2480
|
#
|
2231
2481
|
# @example Request syntax with placeholder values
|
2232
2482
|
#
|
2233
2483
|
# resp = client.list_read_set_activation_jobs({
|
2484
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2485
|
+
# max_results: 1,
|
2486
|
+
# next_token: "NextToken",
|
2234
2487
|
# filter: {
|
2488
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2235
2489
|
# created_after: Time.now,
|
2236
2490
|
# created_before: Time.now,
|
2237
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2238
2491
|
# },
|
2239
|
-
# max_results: 1,
|
2240
|
-
# next_token: "NextToken",
|
2241
|
-
# sequence_store_id: "SequenceStoreId", # required
|
2242
2492
|
# })
|
2243
2493
|
#
|
2244
2494
|
# @example Response structure
|
2245
2495
|
#
|
2496
|
+
# resp.next_token #=> String
|
2246
2497
|
# resp.activation_jobs #=> Array
|
2247
|
-
# resp.activation_jobs[0].completion_time #=> Time
|
2248
|
-
# resp.activation_jobs[0].creation_time #=> Time
|
2249
2498
|
# resp.activation_jobs[0].id #=> String
|
2250
2499
|
# resp.activation_jobs[0].sequence_store_id #=> String
|
2251
2500
|
# resp.activation_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
2252
|
-
# resp.
|
2501
|
+
# resp.activation_jobs[0].creation_time #=> Time
|
2502
|
+
# resp.activation_jobs[0].completion_time #=> Time
|
2253
2503
|
#
|
2254
2504
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetActivationJobs AWS API Documentation
|
2255
2505
|
#
|
@@ -2262,8 +2512,8 @@ module Aws::Omics
|
|
2262
2512
|
|
2263
2513
|
# Retrieves a list of read set export jobs.
|
2264
2514
|
#
|
2265
|
-
# @option params [
|
2266
|
-
#
|
2515
|
+
# @option params [required, String] :sequence_store_id
|
2516
|
+
# The jobs' sequence store ID.
|
2267
2517
|
#
|
2268
2518
|
# @option params [Integer] :max_results
|
2269
2519
|
# The maximum number of jobs to return in one page of results.
|
@@ -2272,39 +2522,39 @@ module Aws::Omics
|
|
2272
2522
|
# Specify the pagination token from a previous request to retrieve the
|
2273
2523
|
# next page of results.
|
2274
2524
|
#
|
2275
|
-
# @option params [
|
2276
|
-
#
|
2525
|
+
# @option params [Types::ExportReadSetFilter] :filter
|
2526
|
+
# A filter to apply to the list.
|
2277
2527
|
#
|
2278
2528
|
# @return [Types::ListReadSetExportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2279
2529
|
#
|
2280
|
-
# * {Types::ListReadSetExportJobsResponse#export_jobs #export_jobs} => Array<Types::ExportReadSetJobDetail>
|
2281
2530
|
# * {Types::ListReadSetExportJobsResponse#next_token #next_token} => String
|
2531
|
+
# * {Types::ListReadSetExportJobsResponse#export_jobs #export_jobs} => Array<Types::ExportReadSetJobDetail>
|
2282
2532
|
#
|
2283
2533
|
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2284
2534
|
#
|
2285
2535
|
# @example Request syntax with placeholder values
|
2286
2536
|
#
|
2287
2537
|
# resp = client.list_read_set_export_jobs({
|
2538
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2539
|
+
# max_results: 1,
|
2540
|
+
# next_token: "NextToken",
|
2288
2541
|
# filter: {
|
2542
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2289
2543
|
# created_after: Time.now,
|
2290
2544
|
# created_before: Time.now,
|
2291
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2292
2545
|
# },
|
2293
|
-
# max_results: 1,
|
2294
|
-
# next_token: "NextToken",
|
2295
|
-
# sequence_store_id: "SequenceStoreId", # required
|
2296
2546
|
# })
|
2297
2547
|
#
|
2298
2548
|
# @example Response structure
|
2299
2549
|
#
|
2550
|
+
# resp.next_token #=> String
|
2300
2551
|
# resp.export_jobs #=> Array
|
2301
|
-
# resp.export_jobs[0].completion_time #=> Time
|
2302
|
-
# resp.export_jobs[0].creation_time #=> Time
|
2303
|
-
# resp.export_jobs[0].destination #=> String
|
2304
2552
|
# resp.export_jobs[0].id #=> String
|
2305
2553
|
# resp.export_jobs[0].sequence_store_id #=> String
|
2554
|
+
# resp.export_jobs[0].destination #=> String
|
2306
2555
|
# resp.export_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
2307
|
-
# resp.
|
2556
|
+
# resp.export_jobs[0].creation_time #=> Time
|
2557
|
+
# resp.export_jobs[0].completion_time #=> Time
|
2308
2558
|
#
|
2309
2559
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetExportJobs AWS API Documentation
|
2310
2560
|
#
|
@@ -2317,9 +2567,6 @@ module Aws::Omics
|
|
2317
2567
|
|
2318
2568
|
# Retrieves a list of read set import jobs.
|
2319
2569
|
#
|
2320
|
-
# @option params [Types::ImportReadSetFilter] :filter
|
2321
|
-
# A filter to apply to the list.
|
2322
|
-
#
|
2323
2570
|
# @option params [Integer] :max_results
|
2324
2571
|
# The maximum number of jobs to return in one page of results.
|
2325
2572
|
#
|
@@ -2330,36 +2577,39 @@ module Aws::Omics
|
|
2330
2577
|
# @option params [required, String] :sequence_store_id
|
2331
2578
|
# The jobs' sequence store ID.
|
2332
2579
|
#
|
2580
|
+
# @option params [Types::ImportReadSetFilter] :filter
|
2581
|
+
# A filter to apply to the list.
|
2582
|
+
#
|
2333
2583
|
# @return [Types::ListReadSetImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2334
2584
|
#
|
2335
|
-
# * {Types::ListReadSetImportJobsResponse#import_jobs #import_jobs} => Array<Types::ImportReadSetJobItem>
|
2336
2585
|
# * {Types::ListReadSetImportJobsResponse#next_token #next_token} => String
|
2586
|
+
# * {Types::ListReadSetImportJobsResponse#import_jobs #import_jobs} => Array<Types::ImportReadSetJobItem>
|
2337
2587
|
#
|
2338
2588
|
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2339
2589
|
#
|
2340
2590
|
# @example Request syntax with placeholder values
|
2341
2591
|
#
|
2342
2592
|
# resp = client.list_read_set_import_jobs({
|
2593
|
+
# max_results: 1,
|
2594
|
+
# next_token: "NextToken",
|
2595
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2343
2596
|
# filter: {
|
2597
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2344
2598
|
# created_after: Time.now,
|
2345
2599
|
# created_before: Time.now,
|
2346
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2347
2600
|
# },
|
2348
|
-
# max_results: 1,
|
2349
|
-
# next_token: "NextToken",
|
2350
|
-
# sequence_store_id: "SequenceStoreId", # required
|
2351
2601
|
# })
|
2352
2602
|
#
|
2353
2603
|
# @example Response structure
|
2354
2604
|
#
|
2605
|
+
# resp.next_token #=> String
|
2355
2606
|
# resp.import_jobs #=> Array
|
2356
|
-
# resp.import_jobs[0].completion_time #=> Time
|
2357
|
-
# resp.import_jobs[0].creation_time #=> Time
|
2358
2607
|
# resp.import_jobs[0].id #=> String
|
2359
|
-
# resp.import_jobs[0].role_arn #=> String
|
2360
2608
|
# resp.import_jobs[0].sequence_store_id #=> String
|
2609
|
+
# resp.import_jobs[0].role_arn #=> String
|
2361
2610
|
# resp.import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
2362
|
-
# resp.
|
2611
|
+
# resp.import_jobs[0].creation_time #=> Time
|
2612
|
+
# resp.import_jobs[0].completion_time #=> Time
|
2363
2613
|
#
|
2364
2614
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetImportJobs AWS API Documentation
|
2365
2615
|
#
|
@@ -2370,10 +2620,75 @@ module Aws::Omics
|
|
2370
2620
|
req.send_request(options)
|
2371
2621
|
end
|
2372
2622
|
|
2623
|
+
# This operation will list all parts in a requested multipart upload for
|
2624
|
+
# a sequence store.
|
2625
|
+
#
|
2626
|
+
# @option params [required, String] :sequence_store_id
|
2627
|
+
# The Sequence Store ID used for the multipart uploads.
|
2628
|
+
#
|
2629
|
+
# @option params [required, String] :upload_id
|
2630
|
+
# The ID for the initiated multipart upload.
|
2631
|
+
#
|
2632
|
+
# @option params [required, String] :part_source
|
2633
|
+
# The source file for the upload part.
|
2634
|
+
#
|
2635
|
+
# @option params [Integer] :max_results
|
2636
|
+
# The maximum number of read set upload parts returned in a page.
|
2637
|
+
#
|
2638
|
+
# @option params [String] :next_token
|
2639
|
+
# Next token returned in the response of a previous
|
2640
|
+
# ListReadSetUploadPartsRequest call. Used to get the next page of
|
2641
|
+
# results.
|
2642
|
+
#
|
2643
|
+
# @option params [Types::ReadSetUploadPartListFilter] :filter
|
2644
|
+
# Attributes used to filter for a specific subset of read set part
|
2645
|
+
# uploads.
|
2646
|
+
#
|
2647
|
+
# @return [Types::ListReadSetUploadPartsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2648
|
+
#
|
2649
|
+
# * {Types::ListReadSetUploadPartsResponse#next_token #next_token} => String
|
2650
|
+
# * {Types::ListReadSetUploadPartsResponse#parts #parts} => Array<Types::ReadSetUploadPartListItem>
|
2651
|
+
#
|
2652
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2653
|
+
#
|
2654
|
+
# @example Request syntax with placeholder values
|
2655
|
+
#
|
2656
|
+
# resp = client.list_read_set_upload_parts({
|
2657
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2658
|
+
# upload_id: "UploadId", # required
|
2659
|
+
# part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2
|
2660
|
+
# max_results: 1,
|
2661
|
+
# next_token: "NextToken",
|
2662
|
+
# filter: {
|
2663
|
+
# created_after: Time.now,
|
2664
|
+
# created_before: Time.now,
|
2665
|
+
# },
|
2666
|
+
# })
|
2667
|
+
#
|
2668
|
+
# @example Response structure
|
2669
|
+
#
|
2670
|
+
# resp.next_token #=> String
|
2671
|
+
# resp.parts #=> Array
|
2672
|
+
# resp.parts[0].part_number #=> Integer
|
2673
|
+
# resp.parts[0].part_size #=> Integer
|
2674
|
+
# resp.parts[0].part_source #=> String, one of "SOURCE1", "SOURCE2"
|
2675
|
+
# resp.parts[0].checksum #=> String
|
2676
|
+
# resp.parts[0].creation_time #=> Time
|
2677
|
+
# resp.parts[0].last_updated_time #=> Time
|
2678
|
+
#
|
2679
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetUploadParts AWS API Documentation
|
2680
|
+
#
|
2681
|
+
# @overload list_read_set_upload_parts(params = {})
|
2682
|
+
# @param [Hash] params ({})
|
2683
|
+
def list_read_set_upload_parts(params = {}, options = {})
|
2684
|
+
req = build_request(:list_read_set_upload_parts, params)
|
2685
|
+
req.send_request(options)
|
2686
|
+
end
|
2687
|
+
|
2373
2688
|
# Retrieves a list of read sets.
|
2374
2689
|
#
|
2375
|
-
# @option params [
|
2376
|
-
#
|
2690
|
+
# @option params [required, String] :sequence_store_id
|
2691
|
+
# The jobs' sequence store ID.
|
2377
2692
|
#
|
2378
2693
|
# @option params [Integer] :max_results
|
2379
2694
|
# The maximum number of read sets to return in one page of results.
|
@@ -2382,8 +2697,8 @@ module Aws::Omics
|
|
2382
2697
|
# Specify the pagination token from a previous request to retrieve the
|
2383
2698
|
# next page of results.
|
2384
2699
|
#
|
2385
|
-
# @option params [
|
2386
|
-
#
|
2700
|
+
# @option params [Types::ReadSetFilter] :filter
|
2701
|
+
# A filter to apply to the list.
|
2387
2702
|
#
|
2388
2703
|
# @return [Types::ListReadSetsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2389
2704
|
#
|
@@ -2395,37 +2710,41 @@ module Aws::Omics
|
|
2395
2710
|
# @example Request syntax with placeholder values
|
2396
2711
|
#
|
2397
2712
|
# resp = client.list_read_sets({
|
2713
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2714
|
+
# max_results: 1,
|
2715
|
+
# next_token: "NextToken",
|
2398
2716
|
# filter: {
|
2399
|
-
# created_after: Time.now,
|
2400
|
-
# created_before: Time.now,
|
2401
2717
|
# name: "ReadSetName",
|
2718
|
+
# status: "ARCHIVED", # accepts ARCHIVED, ACTIVATING, ACTIVE, DELETING, DELETED, PROCESSING_UPLOAD, UPLOAD_FAILED
|
2402
2719
|
# reference_arn: "ReferenceArn",
|
2403
|
-
#
|
2720
|
+
# created_after: Time.now,
|
2721
|
+
# created_before: Time.now,
|
2722
|
+
# sample_id: "SampleId",
|
2723
|
+
# subject_id: "SubjectId",
|
2724
|
+
# generated_from: "GeneratedFrom",
|
2404
2725
|
# },
|
2405
|
-
# max_results: 1,
|
2406
|
-
# next_token: "NextToken",
|
2407
|
-
# sequence_store_id: "SequenceStoreId", # required
|
2408
2726
|
# })
|
2409
2727
|
#
|
2410
2728
|
# @example Response structure
|
2411
2729
|
#
|
2412
2730
|
# resp.next_token #=> String
|
2413
2731
|
# resp.read_sets #=> Array
|
2414
|
-
# resp.read_sets[0].arn #=> String
|
2415
|
-
# resp.read_sets[0].creation_time #=> Time
|
2416
|
-
# resp.read_sets[0].description #=> String
|
2417
|
-
# resp.read_sets[0].file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
2418
2732
|
# resp.read_sets[0].id #=> String
|
2733
|
+
# resp.read_sets[0].arn #=> String
|
2734
|
+
# resp.read_sets[0].sequence_store_id #=> String
|
2735
|
+
# resp.read_sets[0].subject_id #=> String
|
2736
|
+
# resp.read_sets[0].sample_id #=> String
|
2737
|
+
# resp.read_sets[0].status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "PROCESSING_UPLOAD", "UPLOAD_FAILED"
|
2419
2738
|
# resp.read_sets[0].name #=> String
|
2739
|
+
# resp.read_sets[0].description #=> String
|
2420
2740
|
# resp.read_sets[0].reference_arn #=> String
|
2421
|
-
# resp.read_sets[0].
|
2422
|
-
# resp.read_sets[0].sequence_information.alignment #=> String
|
2423
|
-
# resp.read_sets[0].sequence_information.generated_from #=> String
|
2424
|
-
# resp.read_sets[0].sequence_information.total_base_count #=> Integer
|
2741
|
+
# resp.read_sets[0].file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
2425
2742
|
# resp.read_sets[0].sequence_information.total_read_count #=> Integer
|
2426
|
-
# resp.read_sets[0].
|
2427
|
-
# resp.read_sets[0].
|
2428
|
-
# resp.read_sets[0].
|
2743
|
+
# resp.read_sets[0].sequence_information.total_base_count #=> Integer
|
2744
|
+
# resp.read_sets[0].sequence_information.generated_from #=> String
|
2745
|
+
# resp.read_sets[0].sequence_information.alignment #=> String
|
2746
|
+
# resp.read_sets[0].creation_time #=> Time
|
2747
|
+
# resp.read_sets[0].status_message #=> String
|
2429
2748
|
#
|
2430
2749
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSets AWS API Documentation
|
2431
2750
|
#
|
@@ -2438,9 +2757,6 @@ module Aws::Omics
|
|
2438
2757
|
|
2439
2758
|
# Retrieves a list of reference import jobs.
|
2440
2759
|
#
|
2441
|
-
# @option params [Types::ImportReferenceFilter] :filter
|
2442
|
-
# A filter to apply to the list.
|
2443
|
-
#
|
2444
2760
|
# @option params [Integer] :max_results
|
2445
2761
|
# The maximum number of jobs to return in one page of results.
|
2446
2762
|
#
|
@@ -2451,36 +2767,39 @@ module Aws::Omics
|
|
2451
2767
|
# @option params [required, String] :reference_store_id
|
2452
2768
|
# The job's reference store ID.
|
2453
2769
|
#
|
2770
|
+
# @option params [Types::ImportReferenceFilter] :filter
|
2771
|
+
# A filter to apply to the list.
|
2772
|
+
#
|
2454
2773
|
# @return [Types::ListReferenceImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2455
2774
|
#
|
2456
|
-
# * {Types::ListReferenceImportJobsResponse#import_jobs #import_jobs} => Array<Types::ImportReferenceJobItem>
|
2457
2775
|
# * {Types::ListReferenceImportJobsResponse#next_token #next_token} => String
|
2776
|
+
# * {Types::ListReferenceImportJobsResponse#import_jobs #import_jobs} => Array<Types::ImportReferenceJobItem>
|
2458
2777
|
#
|
2459
2778
|
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2460
2779
|
#
|
2461
2780
|
# @example Request syntax with placeholder values
|
2462
2781
|
#
|
2463
2782
|
# resp = client.list_reference_import_jobs({
|
2783
|
+
# max_results: 1,
|
2784
|
+
# next_token: "NextToken",
|
2785
|
+
# reference_store_id: "ReferenceStoreId", # required
|
2464
2786
|
# filter: {
|
2787
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2465
2788
|
# created_after: Time.now,
|
2466
2789
|
# created_before: Time.now,
|
2467
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2468
2790
|
# },
|
2469
|
-
# max_results: 1,
|
2470
|
-
# next_token: "NextToken",
|
2471
|
-
# reference_store_id: "ReferenceStoreId", # required
|
2472
2791
|
# })
|
2473
2792
|
#
|
2474
2793
|
# @example Response structure
|
2475
2794
|
#
|
2795
|
+
# resp.next_token #=> String
|
2476
2796
|
# resp.import_jobs #=> Array
|
2477
|
-
# resp.import_jobs[0].completion_time #=> Time
|
2478
|
-
# resp.import_jobs[0].creation_time #=> Time
|
2479
2797
|
# resp.import_jobs[0].id #=> String
|
2480
2798
|
# resp.import_jobs[0].reference_store_id #=> String
|
2481
2799
|
# resp.import_jobs[0].role_arn #=> String
|
2482
2800
|
# resp.import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
2483
|
-
# resp.
|
2801
|
+
# resp.import_jobs[0].creation_time #=> Time
|
2802
|
+
# resp.import_jobs[0].completion_time #=> Time
|
2484
2803
|
#
|
2485
2804
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferenceImportJobs AWS API Documentation
|
2486
2805
|
#
|
@@ -2493,9 +2812,6 @@ module Aws::Omics
|
|
2493
2812
|
|
2494
2813
|
# Retrieves a list of reference stores.
|
2495
2814
|
#
|
2496
|
-
# @option params [Types::ReferenceStoreFilter] :filter
|
2497
|
-
# A filter to apply to the list.
|
2498
|
-
#
|
2499
2815
|
# @option params [Integer] :max_results
|
2500
2816
|
# The maximum number of stores to return in one page of results.
|
2501
2817
|
#
|
@@ -2503,6 +2819,9 @@ module Aws::Omics
|
|
2503
2819
|
# Specify the pagination token from a previous request to retrieve the
|
2504
2820
|
# next page of results.
|
2505
2821
|
#
|
2822
|
+
# @option params [Types::ReferenceStoreFilter] :filter
|
2823
|
+
# A filter to apply to the list.
|
2824
|
+
#
|
2506
2825
|
# @return [Types::ListReferenceStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2507
2826
|
#
|
2508
2827
|
# * {Types::ListReferenceStoresResponse#next_token #next_token} => String
|
@@ -2513,13 +2832,13 @@ module Aws::Omics
|
|
2513
2832
|
# @example Request syntax with placeholder values
|
2514
2833
|
#
|
2515
2834
|
# resp = client.list_reference_stores({
|
2835
|
+
# max_results: 1,
|
2836
|
+
# next_token: "NextToken",
|
2516
2837
|
# filter: {
|
2838
|
+
# name: "ReferenceStoreName",
|
2517
2839
|
# created_after: Time.now,
|
2518
2840
|
# created_before: Time.now,
|
2519
|
-
# name: "ReferenceStoreName",
|
2520
2841
|
# },
|
2521
|
-
# max_results: 1,
|
2522
|
-
# next_token: "NextToken",
|
2523
2842
|
# })
|
2524
2843
|
#
|
2525
2844
|
# @example Response structure
|
@@ -2527,12 +2846,12 @@ module Aws::Omics
|
|
2527
2846
|
# resp.next_token #=> String
|
2528
2847
|
# resp.reference_stores #=> Array
|
2529
2848
|
# resp.reference_stores[0].arn #=> String
|
2530
|
-
# resp.reference_stores[0].creation_time #=> Time
|
2531
|
-
# resp.reference_stores[0].description #=> String
|
2532
2849
|
# resp.reference_stores[0].id #=> String
|
2533
2850
|
# resp.reference_stores[0].name #=> String
|
2534
|
-
# resp.reference_stores[0].
|
2851
|
+
# resp.reference_stores[0].description #=> String
|
2535
2852
|
# resp.reference_stores[0].sse_config.type #=> String, one of "KMS"
|
2853
|
+
# resp.reference_stores[0].sse_config.key_arn #=> String
|
2854
|
+
# resp.reference_stores[0].creation_time #=> Time
|
2536
2855
|
#
|
2537
2856
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferenceStores AWS API Documentation
|
2538
2857
|
#
|
@@ -2545,8 +2864,8 @@ module Aws::Omics
|
|
2545
2864
|
|
2546
2865
|
# Retrieves a list of references.
|
2547
2866
|
#
|
2548
|
-
# @option params [
|
2549
|
-
#
|
2867
|
+
# @option params [required, String] :reference_store_id
|
2868
|
+
# The references' reference store ID.
|
2550
2869
|
#
|
2551
2870
|
# @option params [Integer] :max_results
|
2552
2871
|
# The maximum number of references to return in one page of results.
|
@@ -2555,8 +2874,8 @@ module Aws::Omics
|
|
2555
2874
|
# Specify the pagination token from a previous request to retrieve the
|
2556
2875
|
# next page of results.
|
2557
2876
|
#
|
2558
|
-
# @option params [
|
2559
|
-
#
|
2877
|
+
# @option params [Types::ReferenceFilter] :filter
|
2878
|
+
# A filter to apply to the list.
|
2560
2879
|
#
|
2561
2880
|
# @return [Types::ListReferencesResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2562
2881
|
#
|
@@ -2568,29 +2887,29 @@ module Aws::Omics
|
|
2568
2887
|
# @example Request syntax with placeholder values
|
2569
2888
|
#
|
2570
2889
|
# resp = client.list_references({
|
2890
|
+
# reference_store_id: "ReferenceStoreId", # required
|
2891
|
+
# max_results: 1,
|
2892
|
+
# next_token: "NextToken",
|
2571
2893
|
# filter: {
|
2894
|
+
# name: "ReferenceName",
|
2895
|
+
# md5: "Md5",
|
2572
2896
|
# created_after: Time.now,
|
2573
2897
|
# created_before: Time.now,
|
2574
|
-
# md5: "Md5",
|
2575
|
-
# name: "ReferenceName",
|
2576
2898
|
# },
|
2577
|
-
# max_results: 1,
|
2578
|
-
# next_token: "NextToken",
|
2579
|
-
# reference_store_id: "ReferenceStoreId", # required
|
2580
2899
|
# })
|
2581
2900
|
#
|
2582
2901
|
# @example Response structure
|
2583
2902
|
#
|
2584
2903
|
# resp.next_token #=> String
|
2585
2904
|
# resp.references #=> Array
|
2586
|
-
# resp.references[0].arn #=> String
|
2587
|
-
# resp.references[0].creation_time #=> Time
|
2588
|
-
# resp.references[0].description #=> String
|
2589
2905
|
# resp.references[0].id #=> String
|
2590
|
-
# resp.references[0].
|
2591
|
-
# resp.references[0].name #=> String
|
2906
|
+
# resp.references[0].arn #=> String
|
2592
2907
|
# resp.references[0].reference_store_id #=> String
|
2908
|
+
# resp.references[0].md5 #=> String
|
2593
2909
|
# resp.references[0].status #=> String, one of "ACTIVE", "DELETING", "DELETED"
|
2910
|
+
# resp.references[0].name #=> String
|
2911
|
+
# resp.references[0].description #=> String
|
2912
|
+
# resp.references[0].creation_time #=> Time
|
2594
2913
|
# resp.references[0].update_time #=> Time
|
2595
2914
|
#
|
2596
2915
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferences AWS API Documentation
|
@@ -2604,9 +2923,6 @@ module Aws::Omics
|
|
2604
2923
|
|
2605
2924
|
# Retrieves a list of run groups.
|
2606
2925
|
#
|
2607
|
-
# @option params [Integer] :max_results
|
2608
|
-
# The maximum number of run groups to return in one page of results.
|
2609
|
-
#
|
2610
2926
|
# @option params [String] :name
|
2611
2927
|
# The run groups' name.
|
2612
2928
|
#
|
@@ -2614,6 +2930,9 @@ module Aws::Omics
|
|
2614
2930
|
# Specify the pagination token from a previous request to retrieve the
|
2615
2931
|
# next page of results.
|
2616
2932
|
#
|
2933
|
+
# @option params [Integer] :max_results
|
2934
|
+
# The maximum number of run groups to return in one page of results.
|
2935
|
+
#
|
2617
2936
|
# @return [Types::ListRunGroupsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2618
2937
|
#
|
2619
2938
|
# * {Types::ListRunGroupsResponse#items #items} => Array<Types::RunGroupListItem>
|
@@ -2624,21 +2943,22 @@ module Aws::Omics
|
|
2624
2943
|
# @example Request syntax with placeholder values
|
2625
2944
|
#
|
2626
2945
|
# resp = client.list_run_groups({
|
2627
|
-
# max_results: 1,
|
2628
2946
|
# name: "RunGroupName",
|
2629
2947
|
# starting_token: "RunGroupListToken",
|
2948
|
+
# max_results: 1,
|
2630
2949
|
# })
|
2631
2950
|
#
|
2632
2951
|
# @example Response structure
|
2633
2952
|
#
|
2634
2953
|
# resp.items #=> Array
|
2635
2954
|
# resp.items[0].arn #=> String
|
2636
|
-
# resp.items[0].creation_time #=> Time
|
2637
2955
|
# resp.items[0].id #=> String
|
2956
|
+
# resp.items[0].name #=> String
|
2638
2957
|
# resp.items[0].max_cpus #=> Integer
|
2639
|
-
# resp.items[0].max_duration #=> Integer
|
2640
2958
|
# resp.items[0].max_runs #=> Integer
|
2641
|
-
# resp.items[0].
|
2959
|
+
# resp.items[0].max_duration #=> Integer
|
2960
|
+
# resp.items[0].creation_time #=> Time
|
2961
|
+
# resp.items[0].max_gpus #=> Integer
|
2642
2962
|
# resp.next_token #=> String
|
2643
2963
|
#
|
2644
2964
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunGroups AWS API Documentation
|
@@ -2655,15 +2975,15 @@ module Aws::Omics
|
|
2655
2975
|
# @option params [required, String] :id
|
2656
2976
|
# The run's ID.
|
2657
2977
|
#
|
2658
|
-
# @option params [
|
2659
|
-
#
|
2978
|
+
# @option params [String] :status
|
2979
|
+
# Filter the list by status.
|
2660
2980
|
#
|
2661
2981
|
# @option params [String] :starting_token
|
2662
2982
|
# Specify the pagination token from a previous request to retrieve the
|
2663
2983
|
# next page of results.
|
2664
2984
|
#
|
2665
|
-
# @option params [
|
2666
|
-
#
|
2985
|
+
# @option params [Integer] :max_results
|
2986
|
+
# The maximum number of run tasks to return in one page of results.
|
2667
2987
|
#
|
2668
2988
|
# @return [Types::ListRunTasksResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2669
2989
|
#
|
@@ -2676,22 +2996,23 @@ module Aws::Omics
|
|
2676
2996
|
#
|
2677
2997
|
# resp = client.list_run_tasks({
|
2678
2998
|
# id: "RunId", # required
|
2679
|
-
# max_results: 1,
|
2680
|
-
# starting_token: "TaskListToken",
|
2681
2999
|
# status: "PENDING", # accepts PENDING, STARTING, RUNNING, STOPPING, COMPLETED, CANCELLED, FAILED
|
3000
|
+
# starting_token: "TaskListToken",
|
3001
|
+
# max_results: 1,
|
2682
3002
|
# })
|
2683
3003
|
#
|
2684
3004
|
# @example Response structure
|
2685
3005
|
#
|
2686
3006
|
# resp.items #=> Array
|
3007
|
+
# resp.items[0].task_id #=> String
|
3008
|
+
# resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
|
3009
|
+
# resp.items[0].name #=> String
|
2687
3010
|
# resp.items[0].cpus #=> Integer
|
2688
|
-
# resp.items[0].creation_time #=> Time
|
2689
3011
|
# resp.items[0].memory #=> Integer
|
2690
|
-
# resp.items[0].
|
3012
|
+
# resp.items[0].creation_time #=> Time
|
2691
3013
|
# resp.items[0].start_time #=> Time
|
2692
|
-
# resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
|
2693
3014
|
# resp.items[0].stop_time #=> Time
|
2694
|
-
# resp.items[0].
|
3015
|
+
# resp.items[0].gpus #=> Integer
|
2695
3016
|
# resp.next_token #=> String
|
2696
3017
|
#
|
2697
3018
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunTasks AWS API Documentation
|
@@ -2705,9 +3026,6 @@ module Aws::Omics
|
|
2705
3026
|
|
2706
3027
|
# Retrieves a list of runs.
|
2707
3028
|
#
|
2708
|
-
# @option params [Integer] :max_results
|
2709
|
-
# The maximum number of runs to return in one page of results.
|
2710
|
-
#
|
2711
3029
|
# @option params [String] :name
|
2712
3030
|
# Filter the list by run name.
|
2713
3031
|
#
|
@@ -2718,6 +3036,12 @@ module Aws::Omics
|
|
2718
3036
|
# Specify the pagination token from a previous request to retrieve the
|
2719
3037
|
# next page of results.
|
2720
3038
|
#
|
3039
|
+
# @option params [Integer] :max_results
|
3040
|
+
# The maximum number of runs to return in one page of results.
|
3041
|
+
#
|
3042
|
+
# @option params [String] :status
|
3043
|
+
# The status of a run.
|
3044
|
+
#
|
2721
3045
|
# @return [Types::ListRunsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2722
3046
|
#
|
2723
3047
|
# * {Types::ListRunsResponse#items #items} => Array<Types::RunListItem>
|
@@ -2728,25 +3052,26 @@ module Aws::Omics
|
|
2728
3052
|
# @example Request syntax with placeholder values
|
2729
3053
|
#
|
2730
3054
|
# resp = client.list_runs({
|
2731
|
-
# max_results: 1,
|
2732
3055
|
# name: "RunName",
|
2733
3056
|
# run_group_id: "RunGroupId",
|
2734
3057
|
# starting_token: "RunListToken",
|
3058
|
+
# max_results: 1,
|
3059
|
+
# status: "PENDING", # accepts PENDING, STARTING, RUNNING, STOPPING, COMPLETED, DELETED, CANCELLED, FAILED
|
2735
3060
|
# })
|
2736
3061
|
#
|
2737
3062
|
# @example Response structure
|
2738
3063
|
#
|
2739
3064
|
# resp.items #=> Array
|
2740
3065
|
# resp.items[0].arn #=> String
|
2741
|
-
# resp.items[0].creation_time #=> Time
|
2742
3066
|
# resp.items[0].id #=> String
|
3067
|
+
# resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
|
3068
|
+
# resp.items[0].workflow_id #=> String
|
2743
3069
|
# resp.items[0].name #=> String
|
2744
3070
|
# resp.items[0].priority #=> Integer
|
3071
|
+
# resp.items[0].storage_capacity #=> Integer
|
3072
|
+
# resp.items[0].creation_time #=> Time
|
2745
3073
|
# resp.items[0].start_time #=> Time
|
2746
|
-
# resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
|
2747
3074
|
# resp.items[0].stop_time #=> Time
|
2748
|
-
# resp.items[0].storage_capacity #=> Integer
|
2749
|
-
# resp.items[0].workflow_id #=> String
|
2750
3075
|
# resp.next_token #=> String
|
2751
3076
|
#
|
2752
3077
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRuns AWS API Documentation
|
@@ -2760,9 +3085,6 @@ module Aws::Omics
|
|
2760
3085
|
|
2761
3086
|
# Retrieves a list of sequence stores.
|
2762
3087
|
#
|
2763
|
-
# @option params [Types::SequenceStoreFilter] :filter
|
2764
|
-
# A filter to apply to the list.
|
2765
|
-
#
|
2766
3088
|
# @option params [Integer] :max_results
|
2767
3089
|
# The maximum number of stores to return in one page of results.
|
2768
3090
|
#
|
@@ -2770,6 +3092,9 @@ module Aws::Omics
|
|
2770
3092
|
# Specify the pagination token from a previous request to retrieve the
|
2771
3093
|
# next page of results.
|
2772
3094
|
#
|
3095
|
+
# @option params [Types::SequenceStoreFilter] :filter
|
3096
|
+
# A filter to apply to the list.
|
3097
|
+
#
|
2773
3098
|
# @return [Types::ListSequenceStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2774
3099
|
#
|
2775
3100
|
# * {Types::ListSequenceStoresResponse#next_token #next_token} => String
|
@@ -2780,13 +3105,13 @@ module Aws::Omics
|
|
2780
3105
|
# @example Request syntax with placeholder values
|
2781
3106
|
#
|
2782
3107
|
# resp = client.list_sequence_stores({
|
3108
|
+
# max_results: 1,
|
3109
|
+
# next_token: "NextToken",
|
2783
3110
|
# filter: {
|
3111
|
+
# name: "SequenceStoreName",
|
2784
3112
|
# created_after: Time.now,
|
2785
3113
|
# created_before: Time.now,
|
2786
|
-
# name: "SequenceStoreName",
|
2787
3114
|
# },
|
2788
|
-
# max_results: 1,
|
2789
|
-
# next_token: "NextToken",
|
2790
3115
|
# })
|
2791
3116
|
#
|
2792
3117
|
# @example Response structure
|
@@ -2794,12 +3119,13 @@ module Aws::Omics
|
|
2794
3119
|
# resp.next_token #=> String
|
2795
3120
|
# resp.sequence_stores #=> Array
|
2796
3121
|
# resp.sequence_stores[0].arn #=> String
|
2797
|
-
# resp.sequence_stores[0].creation_time #=> Time
|
2798
|
-
# resp.sequence_stores[0].description #=> String
|
2799
3122
|
# resp.sequence_stores[0].id #=> String
|
2800
3123
|
# resp.sequence_stores[0].name #=> String
|
2801
|
-
# resp.sequence_stores[0].
|
3124
|
+
# resp.sequence_stores[0].description #=> String
|
2802
3125
|
# resp.sequence_stores[0].sse_config.type #=> String, one of "KMS"
|
3126
|
+
# resp.sequence_stores[0].sse_config.key_arn #=> String
|
3127
|
+
# resp.sequence_stores[0].creation_time #=> Time
|
3128
|
+
# resp.sequence_stores[0].fallback_location #=> String
|
2803
3129
|
#
|
2804
3130
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListSequenceStores AWS API Documentation
|
2805
3131
|
#
|
@@ -2841,50 +3167,52 @@ module Aws::Omics
|
|
2841
3167
|
|
2842
3168
|
# Retrieves a list of variant import jobs.
|
2843
3169
|
#
|
2844
|
-
# @option params [
|
2845
|
-
#
|
3170
|
+
# @option params [Integer] :max_results
|
3171
|
+
# The maximum number of import jobs to return in one page of results.
|
2846
3172
|
#
|
2847
3173
|
# @option params [Array<String>] :ids
|
2848
3174
|
# A list of job IDs.
|
2849
3175
|
#
|
2850
|
-
# @option params [Integer] :max_results
|
2851
|
-
# The maximum number of import jobs to return in one page of results.
|
2852
|
-
#
|
2853
3176
|
# @option params [String] :next_token
|
2854
3177
|
# Specify the pagination token from a previous request to retrieve the
|
2855
3178
|
# next page of results.
|
2856
3179
|
#
|
3180
|
+
# @option params [Types::ListVariantImportJobsFilter] :filter
|
3181
|
+
# A filter to apply to the list.
|
3182
|
+
#
|
2857
3183
|
# @return [Types::ListVariantImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2858
3184
|
#
|
2859
|
-
# * {Types::ListVariantImportJobsResponse#next_token #next_token} => String
|
2860
3185
|
# * {Types::ListVariantImportJobsResponse#variant_import_jobs #variant_import_jobs} => Array<Types::VariantImportJobItem>
|
3186
|
+
# * {Types::ListVariantImportJobsResponse#next_token #next_token} => String
|
2861
3187
|
#
|
2862
3188
|
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2863
3189
|
#
|
2864
3190
|
# @example Request syntax with placeholder values
|
2865
3191
|
#
|
2866
3192
|
# resp = client.list_variant_import_jobs({
|
3193
|
+
# max_results: 1,
|
3194
|
+
# ids: ["ResourceIdentifier"],
|
3195
|
+
# next_token: "ListVariantImportJobsRequestNextTokenString",
|
2867
3196
|
# filter: {
|
2868
3197
|
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED, COMPLETED_WITH_FAILURES
|
2869
3198
|
# store_name: "String",
|
2870
3199
|
# },
|
2871
|
-
# ids: ["ResourceIdentifier"],
|
2872
|
-
# max_results: 1,
|
2873
|
-
# next_token: "ListVariantImportJobsRequestNextTokenString",
|
2874
3200
|
# })
|
2875
3201
|
#
|
2876
3202
|
# @example Response structure
|
2877
3203
|
#
|
2878
|
-
# resp.next_token #=> String
|
2879
3204
|
# resp.variant_import_jobs #=> Array
|
2880
|
-
# resp.variant_import_jobs[0].completion_time #=> Time
|
2881
|
-
# resp.variant_import_jobs[0].creation_time #=> Time
|
2882
|
-
# resp.variant_import_jobs[0].destination_name #=> String
|
2883
3205
|
# resp.variant_import_jobs[0].id #=> String
|
3206
|
+
# resp.variant_import_jobs[0].destination_name #=> String
|
2884
3207
|
# resp.variant_import_jobs[0].role_arn #=> String
|
2885
|
-
# resp.variant_import_jobs[0].run_left_normalization #=> Boolean
|
2886
3208
|
# resp.variant_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
3209
|
+
# resp.variant_import_jobs[0].creation_time #=> Time
|
2887
3210
|
# resp.variant_import_jobs[0].update_time #=> Time
|
3211
|
+
# resp.variant_import_jobs[0].completion_time #=> Time
|
3212
|
+
# resp.variant_import_jobs[0].run_left_normalization #=> Boolean
|
3213
|
+
# resp.variant_import_jobs[0].annotation_fields #=> Hash
|
3214
|
+
# resp.variant_import_jobs[0].annotation_fields["AnnotationFieldMapKeyString"] #=> String
|
3215
|
+
# resp.next_token #=> String
|
2888
3216
|
#
|
2889
3217
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListVariantImportJobs AWS API Documentation
|
2890
3218
|
#
|
@@ -2897,53 +3225,53 @@ module Aws::Omics
|
|
2897
3225
|
|
2898
3226
|
# Retrieves a list of variant stores.
|
2899
3227
|
#
|
2900
|
-
# @option params [
|
2901
|
-
#
|
3228
|
+
# @option params [Integer] :max_results
|
3229
|
+
# The maximum number of stores to return in one page of results.
|
2902
3230
|
#
|
2903
3231
|
# @option params [Array<String>] :ids
|
2904
3232
|
# A list of store IDs.
|
2905
3233
|
#
|
2906
|
-
# @option params [Integer] :max_results
|
2907
|
-
# The maximum number of stores to return in one page of results.
|
2908
|
-
#
|
2909
3234
|
# @option params [String] :next_token
|
2910
3235
|
# Specify the pagination token from a previous request to retrieve the
|
2911
3236
|
# next page of results.
|
2912
3237
|
#
|
3238
|
+
# @option params [Types::ListVariantStoresFilter] :filter
|
3239
|
+
# A filter to apply to the list.
|
3240
|
+
#
|
2913
3241
|
# @return [Types::ListVariantStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2914
3242
|
#
|
2915
|
-
# * {Types::ListVariantStoresResponse#next_token #next_token} => String
|
2916
3243
|
# * {Types::ListVariantStoresResponse#variant_stores #variant_stores} => Array<Types::VariantStoreItem>
|
3244
|
+
# * {Types::ListVariantStoresResponse#next_token #next_token} => String
|
2917
3245
|
#
|
2918
3246
|
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2919
3247
|
#
|
2920
3248
|
# @example Request syntax with placeholder values
|
2921
3249
|
#
|
2922
3250
|
# resp = client.list_variant_stores({
|
3251
|
+
# max_results: 1,
|
3252
|
+
# ids: ["ResourceIdentifier"],
|
3253
|
+
# next_token: "ListVariantStoresRequestNextTokenString",
|
2923
3254
|
# filter: {
|
2924
3255
|
# status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
|
2925
3256
|
# },
|
2926
|
-
# ids: ["ResourceIdentifier"],
|
2927
|
-
# max_results: 1,
|
2928
|
-
# next_token: "ListVariantStoresRequestNextTokenString",
|
2929
3257
|
# })
|
2930
3258
|
#
|
2931
3259
|
# @example Response structure
|
2932
3260
|
#
|
2933
|
-
# resp.next_token #=> String
|
2934
3261
|
# resp.variant_stores #=> Array
|
2935
|
-
# resp.variant_stores[0].creation_time #=> Time
|
2936
|
-
# resp.variant_stores[0].description #=> String
|
2937
3262
|
# resp.variant_stores[0].id #=> String
|
2938
|
-
# resp.variant_stores[0].name #=> String
|
2939
3263
|
# resp.variant_stores[0].reference.reference_arn #=> String
|
2940
|
-
# resp.variant_stores[0].sse_config.key_arn #=> String
|
2941
|
-
# resp.variant_stores[0].sse_config.type #=> String, one of "KMS"
|
2942
3264
|
# resp.variant_stores[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
2943
|
-
# resp.variant_stores[0].status_message #=> String
|
2944
3265
|
# resp.variant_stores[0].store_arn #=> String
|
2945
|
-
# resp.variant_stores[0].
|
3266
|
+
# resp.variant_stores[0].name #=> String
|
3267
|
+
# resp.variant_stores[0].description #=> String
|
3268
|
+
# resp.variant_stores[0].sse_config.type #=> String, one of "KMS"
|
3269
|
+
# resp.variant_stores[0].sse_config.key_arn #=> String
|
3270
|
+
# resp.variant_stores[0].creation_time #=> Time
|
2946
3271
|
# resp.variant_stores[0].update_time #=> Time
|
3272
|
+
# resp.variant_stores[0].status_message #=> String
|
3273
|
+
# resp.variant_stores[0].store_size_bytes #=> Integer
|
3274
|
+
# resp.next_token #=> String
|
2947
3275
|
#
|
2948
3276
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListVariantStores AWS API Documentation
|
2949
3277
|
#
|
@@ -2956,8 +3284,8 @@ module Aws::Omics
|
|
2956
3284
|
|
2957
3285
|
# Retrieves a list of workflows.
|
2958
3286
|
#
|
2959
|
-
# @option params [
|
2960
|
-
# The
|
3287
|
+
# @option params [String] :type
|
3288
|
+
# The workflows' type.
|
2961
3289
|
#
|
2962
3290
|
# @option params [String] :name
|
2963
3291
|
# The workflows' name.
|
@@ -2966,8 +3294,8 @@ module Aws::Omics
|
|
2966
3294
|
# Specify the pagination token from a previous request to retrieve the
|
2967
3295
|
# next page of results.
|
2968
3296
|
#
|
2969
|
-
# @option params [
|
2970
|
-
# The workflows
|
3297
|
+
# @option params [Integer] :max_results
|
3298
|
+
# The maximum number of workflows to return in one page of results.
|
2971
3299
|
#
|
2972
3300
|
# @return [Types::ListWorkflowsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2973
3301
|
#
|
@@ -2979,22 +3307,24 @@ module Aws::Omics
|
|
2979
3307
|
# @example Request syntax with placeholder values
|
2980
3308
|
#
|
2981
3309
|
# resp = client.list_workflows({
|
2982
|
-
#
|
3310
|
+
# type: "PRIVATE", # accepts PRIVATE, READY2RUN
|
2983
3311
|
# name: "WorkflowName",
|
2984
3312
|
# starting_token: "WorkflowListToken",
|
2985
|
-
#
|
3313
|
+
# max_results: 1,
|
2986
3314
|
# })
|
2987
3315
|
#
|
2988
3316
|
# @example Response structure
|
2989
3317
|
#
|
2990
3318
|
# resp.items #=> Array
|
2991
3319
|
# resp.items[0].arn #=> String
|
2992
|
-
# resp.items[0].creation_time #=> Time
|
2993
|
-
# resp.items[0].digest #=> String
|
2994
3320
|
# resp.items[0].id #=> String
|
2995
3321
|
# resp.items[0].name #=> String
|
2996
|
-
# resp.items[0].status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
|
2997
|
-
# resp.items[0].type #=> String, one of "PRIVATE"
|
3322
|
+
# resp.items[0].status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
|
3323
|
+
# resp.items[0].type #=> String, one of "PRIVATE", "READY2RUN"
|
3324
|
+
# resp.items[0].digest #=> String
|
3325
|
+
# resp.items[0].creation_time #=> Time
|
3326
|
+
# resp.items[0].metadata #=> Hash
|
3327
|
+
# resp.items[0].metadata["WorkflowMetadataKey"] #=> String
|
2998
3328
|
# resp.next_token #=> String
|
2999
3329
|
#
|
3000
3330
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListWorkflows AWS API Documentation
|
@@ -3011,18 +3341,21 @@ module Aws::Omics
|
|
3011
3341
|
# @option params [required, String] :destination_name
|
3012
3342
|
# A destination annotation store for the job.
|
3013
3343
|
#
|
3014
|
-
# @option params [
|
3015
|
-
#
|
3344
|
+
# @option params [required, String] :role_arn
|
3345
|
+
# A service role for the job.
|
3016
3346
|
#
|
3017
3347
|
# @option params [required, Array<Types::AnnotationImportItemSource>] :items
|
3018
3348
|
# Items to import.
|
3019
3349
|
#
|
3020
|
-
# @option params [
|
3021
|
-
#
|
3350
|
+
# @option params [Types::FormatOptions] :format_options
|
3351
|
+
# Formatting options for the annotation file.
|
3022
3352
|
#
|
3023
3353
|
# @option params [Boolean] :run_left_normalization
|
3024
3354
|
# The job's left normalization setting.
|
3025
3355
|
#
|
3356
|
+
# @option params [Hash<String,String>] :annotation_fields
|
3357
|
+
# The annotation schema generated by the parsed annotation data.
|
3358
|
+
#
|
3026
3359
|
# @return [Types::StartAnnotationImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3027
3360
|
#
|
3028
3361
|
# * {Types::StartAnnotationImportResponse#job_id #job_id} => String
|
@@ -3031,32 +3364,35 @@ module Aws::Omics
|
|
3031
3364
|
#
|
3032
3365
|
# resp = client.start_annotation_import_job({
|
3033
3366
|
# destination_name: "StoreName", # required
|
3367
|
+
# role_arn: "Arn", # required
|
3368
|
+
# items: [ # required
|
3369
|
+
# {
|
3370
|
+
# source: "S3Uri", # required
|
3371
|
+
# },
|
3372
|
+
# ],
|
3034
3373
|
# format_options: {
|
3035
3374
|
# tsv_options: {
|
3036
3375
|
# read_options: {
|
3037
|
-
#
|
3376
|
+
# sep: "Separator",
|
3038
3377
|
# encoding: "Encoding",
|
3378
|
+
# quote: "Quote",
|
3379
|
+
# quote_all: false,
|
3039
3380
|
# escape: "EscapeChar",
|
3040
3381
|
# escape_quotes: false,
|
3382
|
+
# comment: "CommentChar",
|
3041
3383
|
# header: false,
|
3042
3384
|
# line_sep: "LineSep",
|
3043
|
-
# quote: "Quote",
|
3044
|
-
# quote_all: false,
|
3045
|
-
# sep: "Separator",
|
3046
3385
|
# },
|
3047
3386
|
# },
|
3048
3387
|
# vcf_options: {
|
3049
|
-
# ignore_filter_field: false,
|
3050
3388
|
# ignore_qual_field: false,
|
3389
|
+
# ignore_filter_field: false,
|
3051
3390
|
# },
|
3052
3391
|
# },
|
3053
|
-
# items: [ # required
|
3054
|
-
# {
|
3055
|
-
# source: "S3Uri", # required
|
3056
|
-
# },
|
3057
|
-
# ],
|
3058
|
-
# role_arn: "Arn", # required
|
3059
3392
|
# run_left_normalization: false,
|
3393
|
+
# annotation_fields: {
|
3394
|
+
# "AnnotationFieldMapKeyString" => "AnnotationFieldMapValueString",
|
3395
|
+
# },
|
3060
3396
|
# })
|
3061
3397
|
#
|
3062
3398
|
# @example Response structure
|
@@ -3075,28 +3411,28 @@ module Aws::Omics
|
|
3075
3411
|
# Activates an archived read set. To reduce storage charges, Amazon
|
3076
3412
|
# Omics archives unused read sets after 30 days.
|
3077
3413
|
#
|
3078
|
-
# @option params [String] :client_token
|
3079
|
-
# To ensure that jobs don't run multiple times, specify a unique token
|
3080
|
-
# for each job.
|
3081
|
-
#
|
3082
3414
|
# @option params [required, String] :sequence_store_id
|
3083
3415
|
# The read set's sequence store ID.
|
3084
3416
|
#
|
3417
|
+
# @option params [String] :client_token
|
3418
|
+
# To ensure that jobs don't run multiple times, specify a unique token
|
3419
|
+
# for each job.
|
3420
|
+
#
|
3085
3421
|
# @option params [required, Array<Types::StartReadSetActivationJobSourceItem>] :sources
|
3086
3422
|
# The job's source files.
|
3087
3423
|
#
|
3088
3424
|
# @return [Types::StartReadSetActivationJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3089
3425
|
#
|
3090
|
-
# * {Types::StartReadSetActivationJobResponse#creation_time #creation_time} => Time
|
3091
3426
|
# * {Types::StartReadSetActivationJobResponse#id #id} => String
|
3092
3427
|
# * {Types::StartReadSetActivationJobResponse#sequence_store_id #sequence_store_id} => String
|
3093
3428
|
# * {Types::StartReadSetActivationJobResponse#status #status} => String
|
3429
|
+
# * {Types::StartReadSetActivationJobResponse#creation_time #creation_time} => Time
|
3094
3430
|
#
|
3095
3431
|
# @example Request syntax with placeholder values
|
3096
3432
|
#
|
3097
3433
|
# resp = client.start_read_set_activation_job({
|
3098
|
-
# client_token: "ClientToken",
|
3099
3434
|
# sequence_store_id: "SequenceStoreId", # required
|
3435
|
+
# client_token: "ClientToken",
|
3100
3436
|
# sources: [ # required
|
3101
3437
|
# {
|
3102
3438
|
# read_set_id: "ReadSetId", # required
|
@@ -3106,10 +3442,10 @@ module Aws::Omics
|
|
3106
3442
|
#
|
3107
3443
|
# @example Response structure
|
3108
3444
|
#
|
3109
|
-
# resp.creation_time #=> Time
|
3110
3445
|
# resp.id #=> String
|
3111
3446
|
# resp.sequence_store_id #=> String
|
3112
3447
|
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
3448
|
+
# resp.creation_time #=> Time
|
3113
3449
|
#
|
3114
3450
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetActivationJob AWS API Documentation
|
3115
3451
|
#
|
@@ -3122,9 +3458,8 @@ module Aws::Omics
|
|
3122
3458
|
|
3123
3459
|
# Exports a read set to Amazon S3.
|
3124
3460
|
#
|
3125
|
-
# @option params [String] :
|
3126
|
-
#
|
3127
|
-
# for each job.
|
3461
|
+
# @option params [required, String] :sequence_store_id
|
3462
|
+
# The read set's sequence store ID.
|
3128
3463
|
#
|
3129
3464
|
# @option params [required, String] :destination
|
3130
3465
|
# A location for exported files in Amazon S3.
|
@@ -3132,27 +3467,28 @@ module Aws::Omics
|
|
3132
3467
|
# @option params [required, String] :role_arn
|
3133
3468
|
# A service role for the job.
|
3134
3469
|
#
|
3135
|
-
# @option params [
|
3136
|
-
#
|
3470
|
+
# @option params [String] :client_token
|
3471
|
+
# To ensure that jobs don't run multiple times, specify a unique token
|
3472
|
+
# for each job.
|
3137
3473
|
#
|
3138
3474
|
# @option params [required, Array<Types::ExportReadSet>] :sources
|
3139
3475
|
# The job's source files.
|
3140
3476
|
#
|
3141
3477
|
# @return [Types::StartReadSetExportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3142
3478
|
#
|
3143
|
-
# * {Types::StartReadSetExportJobResponse#creation_time #creation_time} => Time
|
3144
|
-
# * {Types::StartReadSetExportJobResponse#destination #destination} => String
|
3145
3479
|
# * {Types::StartReadSetExportJobResponse#id #id} => String
|
3146
3480
|
# * {Types::StartReadSetExportJobResponse#sequence_store_id #sequence_store_id} => String
|
3481
|
+
# * {Types::StartReadSetExportJobResponse#destination #destination} => String
|
3147
3482
|
# * {Types::StartReadSetExportJobResponse#status #status} => String
|
3483
|
+
# * {Types::StartReadSetExportJobResponse#creation_time #creation_time} => Time
|
3148
3484
|
#
|
3149
3485
|
# @example Request syntax with placeholder values
|
3150
3486
|
#
|
3151
3487
|
# resp = client.start_read_set_export_job({
|
3152
|
-
#
|
3488
|
+
# sequence_store_id: "SequenceStoreId", # required
|
3153
3489
|
# destination: "S3Destination", # required
|
3154
3490
|
# role_arn: "RoleArn", # required
|
3155
|
-
#
|
3491
|
+
# client_token: "ClientToken",
|
3156
3492
|
# sources: [ # required
|
3157
3493
|
# {
|
3158
3494
|
# read_set_id: "ReadSetId", # required
|
@@ -3162,11 +3498,11 @@ module Aws::Omics
|
|
3162
3498
|
#
|
3163
3499
|
# @example Response structure
|
3164
3500
|
#
|
3165
|
-
# resp.creation_time #=> Time
|
3166
|
-
# resp.destination #=> String
|
3167
3501
|
# resp.id #=> String
|
3168
3502
|
# resp.sequence_store_id #=> String
|
3503
|
+
# resp.destination #=> String
|
3169
3504
|
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
3505
|
+
# resp.creation_time #=> Time
|
3170
3506
|
#
|
3171
3507
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetExportJob AWS API Documentation
|
3172
3508
|
#
|
@@ -3179,46 +3515,46 @@ module Aws::Omics
|
|
3179
3515
|
|
3180
3516
|
# Starts a read set import job.
|
3181
3517
|
#
|
3182
|
-
# @option params [String] :
|
3183
|
-
#
|
3184
|
-
# for each job.
|
3518
|
+
# @option params [required, String] :sequence_store_id
|
3519
|
+
# The read set's sequence store ID.
|
3185
3520
|
#
|
3186
3521
|
# @option params [required, String] :role_arn
|
3187
3522
|
# A service role for the job.
|
3188
3523
|
#
|
3189
|
-
# @option params [
|
3190
|
-
#
|
3524
|
+
# @option params [String] :client_token
|
3525
|
+
# To ensure that jobs don't run multiple times, specify a unique token
|
3526
|
+
# for each job.
|
3191
3527
|
#
|
3192
3528
|
# @option params [required, Array<Types::StartReadSetImportJobSourceItem>] :sources
|
3193
3529
|
# The job's source files.
|
3194
3530
|
#
|
3195
3531
|
# @return [Types::StartReadSetImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3196
3532
|
#
|
3197
|
-
# * {Types::StartReadSetImportJobResponse#creation_time #creation_time} => Time
|
3198
3533
|
# * {Types::StartReadSetImportJobResponse#id #id} => String
|
3199
|
-
# * {Types::StartReadSetImportJobResponse#role_arn #role_arn} => String
|
3200
3534
|
# * {Types::StartReadSetImportJobResponse#sequence_store_id #sequence_store_id} => String
|
3535
|
+
# * {Types::StartReadSetImportJobResponse#role_arn #role_arn} => String
|
3201
3536
|
# * {Types::StartReadSetImportJobResponse#status #status} => String
|
3537
|
+
# * {Types::StartReadSetImportJobResponse#creation_time #creation_time} => Time
|
3202
3538
|
#
|
3203
3539
|
# @example Request syntax with placeholder values
|
3204
3540
|
#
|
3205
3541
|
# resp = client.start_read_set_import_job({
|
3206
|
-
# client_token: "ClientToken",
|
3207
|
-
# role_arn: "RoleArn", # required
|
3208
3542
|
# sequence_store_id: "SequenceStoreId", # required
|
3543
|
+
# role_arn: "RoleArn", # required
|
3544
|
+
# client_token: "ClientToken",
|
3209
3545
|
# sources: [ # required
|
3210
3546
|
# {
|
3211
|
-
# description: "ReadSetDescription",
|
3212
|
-
# generated_from: "GeneratedFrom",
|
3213
|
-
# name: "ReadSetName",
|
3214
|
-
# reference_arn: "ReferenceArn", # required
|
3215
|
-
# sample_id: "SampleId", # required
|
3216
|
-
# source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
|
3217
3547
|
# source_files: { # required
|
3218
3548
|
# source1: "S3Uri", # required
|
3219
3549
|
# source2: "S3Uri",
|
3220
3550
|
# },
|
3551
|
+
# source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
|
3221
3552
|
# subject_id: "SubjectId", # required
|
3553
|
+
# sample_id: "SampleId", # required
|
3554
|
+
# generated_from: "GeneratedFrom",
|
3555
|
+
# reference_arn: "ReferenceArn", # required
|
3556
|
+
# name: "ReadSetName",
|
3557
|
+
# description: "ReadSetDescription",
|
3222
3558
|
# tags: {
|
3223
3559
|
# "TagKey" => "TagValue",
|
3224
3560
|
# },
|
@@ -3228,11 +3564,11 @@ module Aws::Omics
|
|
3228
3564
|
#
|
3229
3565
|
# @example Response structure
|
3230
3566
|
#
|
3231
|
-
# resp.creation_time #=> Time
|
3232
3567
|
# resp.id #=> String
|
3233
|
-
# resp.role_arn #=> String
|
3234
3568
|
# resp.sequence_store_id #=> String
|
3569
|
+
# resp.role_arn #=> String
|
3235
3570
|
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
3571
|
+
# resp.creation_time #=> Time
|
3236
3572
|
#
|
3237
3573
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetImportJob AWS API Documentation
|
3238
3574
|
#
|
@@ -3245,38 +3581,38 @@ module Aws::Omics
|
|
3245
3581
|
|
3246
3582
|
# Starts a reference import job.
|
3247
3583
|
#
|
3248
|
-
# @option params [String] :client_token
|
3249
|
-
# To ensure that jobs don't run multiple times, specify a unique token
|
3250
|
-
# for each job.
|
3251
|
-
#
|
3252
3584
|
# @option params [required, String] :reference_store_id
|
3253
3585
|
# The job's reference store ID.
|
3254
3586
|
#
|
3255
3587
|
# @option params [required, String] :role_arn
|
3256
3588
|
# A service role for the job.
|
3257
3589
|
#
|
3590
|
+
# @option params [String] :client_token
|
3591
|
+
# To ensure that jobs don't run multiple times, specify a unique token
|
3592
|
+
# for each job.
|
3593
|
+
#
|
3258
3594
|
# @option params [required, Array<Types::StartReferenceImportJobSourceItem>] :sources
|
3259
3595
|
# The job's source files.
|
3260
3596
|
#
|
3261
3597
|
# @return [Types::StartReferenceImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3262
3598
|
#
|
3263
|
-
# * {Types::StartReferenceImportJobResponse#creation_time #creation_time} => Time
|
3264
3599
|
# * {Types::StartReferenceImportJobResponse#id #id} => String
|
3265
3600
|
# * {Types::StartReferenceImportJobResponse#reference_store_id #reference_store_id} => String
|
3266
3601
|
# * {Types::StartReferenceImportJobResponse#role_arn #role_arn} => String
|
3267
3602
|
# * {Types::StartReferenceImportJobResponse#status #status} => String
|
3603
|
+
# * {Types::StartReferenceImportJobResponse#creation_time #creation_time} => Time
|
3268
3604
|
#
|
3269
3605
|
# @example Request syntax with placeholder values
|
3270
3606
|
#
|
3271
3607
|
# resp = client.start_reference_import_job({
|
3272
|
-
# client_token: "ClientToken",
|
3273
3608
|
# reference_store_id: "ReferenceStoreId", # required
|
3274
3609
|
# role_arn: "RoleArn", # required
|
3610
|
+
# client_token: "ClientToken",
|
3275
3611
|
# sources: [ # required
|
3276
3612
|
# {
|
3277
|
-
# description: "ReferenceDescription",
|
3278
|
-
# name: "ReferenceName", # required
|
3279
3613
|
# source_file: "S3Uri", # required
|
3614
|
+
# name: "ReferenceName", # required
|
3615
|
+
# description: "ReferenceDescription",
|
3280
3616
|
# tags: {
|
3281
3617
|
# "TagKey" => "TagValue",
|
3282
3618
|
# },
|
@@ -3286,11 +3622,11 @@ module Aws::Omics
|
|
3286
3622
|
#
|
3287
3623
|
# @example Response structure
|
3288
3624
|
#
|
3289
|
-
# resp.creation_time #=> Time
|
3290
3625
|
# resp.id #=> String
|
3291
3626
|
# resp.reference_store_id #=> String
|
3292
3627
|
# resp.role_arn #=> String
|
3293
3628
|
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
3629
|
+
# resp.creation_time #=> Time
|
3294
3630
|
#
|
3295
3631
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReferenceImportJob AWS API Documentation
|
3296
3632
|
#
|
@@ -3303,14 +3639,26 @@ module Aws::Omics
|
|
3303
3639
|
|
3304
3640
|
# Starts a run.
|
3305
3641
|
#
|
3306
|
-
# @option params [String] :
|
3307
|
-
#
|
3642
|
+
# @option params [String] :workflow_id
|
3643
|
+
# The run's workflow ID.
|
3644
|
+
#
|
3645
|
+
# @option params [String] :workflow_type
|
3646
|
+
# The run's workflows type.
|
3647
|
+
#
|
3648
|
+
# @option params [String] :run_id
|
3649
|
+
# The run's ID.
|
3650
|
+
#
|
3651
|
+
# @option params [required, String] :role_arn
|
3652
|
+
# A service role for the run.
|
3308
3653
|
#
|
3309
3654
|
# @option params [String] :name
|
3310
3655
|
# A name for the run.
|
3311
3656
|
#
|
3312
|
-
# @option params [String] :
|
3313
|
-
#
|
3657
|
+
# @option params [String] :run_group_id
|
3658
|
+
# The run's group ID.
|
3659
|
+
#
|
3660
|
+
# @option params [Integer] :priority
|
3661
|
+
# A priority for the run.
|
3314
3662
|
#
|
3315
3663
|
# @option params [Hash,Array,String,Numeric,Boolean] :parameters
|
3316
3664
|
# Parameters for the run.
|
@@ -3320,36 +3668,24 @@ module Aws::Omics
|
|
3320
3668
|
# serialized using the same format as its surroundings and requires no
|
3321
3669
|
# additional encoding or escaping.
|
3322
3670
|
#
|
3323
|
-
# @option params [Integer] :priority
|
3324
|
-
# A priority for the run.
|
3325
|
-
#
|
3326
|
-
# @option params [required, String] :request_id
|
3327
|
-
# To ensure that requests don't run multiple times, specify a unique ID
|
3328
|
-
# for each request.
|
3329
|
-
#
|
3330
|
-
# **A suitable default value is auto-generated.** You should normally
|
3331
|
-
# not need to pass this option.**
|
3332
|
-
#
|
3333
|
-
# @option params [required, String] :role_arn
|
3334
|
-
# A service role for the run.
|
3335
|
-
#
|
3336
|
-
# @option params [String] :run_group_id
|
3337
|
-
# The run's group ID.
|
3338
|
-
#
|
3339
|
-
# @option params [String] :run_id
|
3340
|
-
# The run's ID.
|
3341
|
-
#
|
3342
3671
|
# @option params [Integer] :storage_capacity
|
3343
3672
|
# A storage capacity for the run in gigabytes.
|
3344
3673
|
#
|
3674
|
+
# @option params [String] :output_uri
|
3675
|
+
# An output URI for the run.
|
3676
|
+
#
|
3677
|
+
# @option params [String] :log_level
|
3678
|
+
# A log level for the run.
|
3679
|
+
#
|
3345
3680
|
# @option params [Hash<String,String>] :tags
|
3346
3681
|
# Tags for the run.
|
3347
3682
|
#
|
3348
|
-
# @option params [String] :
|
3349
|
-
#
|
3683
|
+
# @option params [required, String] :request_id
|
3684
|
+
# To ensure that requests don't run multiple times, specify a unique ID
|
3685
|
+
# for each request.
|
3350
3686
|
#
|
3351
|
-
#
|
3352
|
-
#
|
3687
|
+
# **A suitable default value is auto-generated.** You should normally
|
3688
|
+
# not need to pass this option.**
|
3353
3689
|
#
|
3354
3690
|
# @return [Types::StartRunResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3355
3691
|
#
|
@@ -3361,22 +3697,22 @@ module Aws::Omics
|
|
3361
3697
|
# @example Request syntax with placeholder values
|
3362
3698
|
#
|
3363
3699
|
# resp = client.start_run({
|
3364
|
-
#
|
3700
|
+
# workflow_id: "WorkflowId",
|
3701
|
+
# workflow_type: "PRIVATE", # accepts PRIVATE, READY2RUN
|
3702
|
+
# run_id: "RunId",
|
3703
|
+
# role_arn: "RunRoleArn", # required
|
3365
3704
|
# name: "RunName",
|
3366
|
-
#
|
3705
|
+
# run_group_id: "RunGroupId",
|
3706
|
+
# priority: 1,
|
3367
3707
|
# parameters: {
|
3368
3708
|
# },
|
3369
|
-
# priority: 1,
|
3370
|
-
# request_id: "RunRequestId", # required
|
3371
|
-
# role_arn: "RunRoleArn", # required
|
3372
|
-
# run_group_id: "RunGroupId",
|
3373
|
-
# run_id: "RunId",
|
3374
3709
|
# storage_capacity: 1,
|
3710
|
+
# output_uri: "RunOutputUri",
|
3711
|
+
# log_level: "OFF", # accepts OFF, FATAL, ERROR, ALL
|
3375
3712
|
# tags: {
|
3376
3713
|
# "TagKey" => "TagValue",
|
3377
3714
|
# },
|
3378
|
-
#
|
3379
|
-
# workflow_type: "PRIVATE", # accepts PRIVATE
|
3715
|
+
# request_id: "RunRequestId", # required
|
3380
3716
|
# })
|
3381
3717
|
#
|
3382
3718
|
# @example Response structure
|
@@ -3401,15 +3737,18 @@ module Aws::Omics
|
|
3401
3737
|
# @option params [required, String] :destination_name
|
3402
3738
|
# The destination variant store for the job.
|
3403
3739
|
#
|
3404
|
-
# @option params [required, Array<Types::VariantImportItemSource>] :items
|
3405
|
-
# Items to import.
|
3406
|
-
#
|
3407
3740
|
# @option params [required, String] :role_arn
|
3408
3741
|
# A service role for the job.
|
3409
3742
|
#
|
3743
|
+
# @option params [required, Array<Types::VariantImportItemSource>] :items
|
3744
|
+
# Items to import.
|
3745
|
+
#
|
3410
3746
|
# @option params [Boolean] :run_left_normalization
|
3411
3747
|
# The job's left normalization setting.
|
3412
3748
|
#
|
3749
|
+
# @option params [Hash<String,String>] :annotation_fields
|
3750
|
+
# The annotation schema generated by the parsed annotation data.
|
3751
|
+
#
|
3413
3752
|
# @return [Types::StartVariantImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3414
3753
|
#
|
3415
3754
|
# * {Types::StartVariantImportResponse#job_id #job_id} => String
|
@@ -3418,13 +3757,16 @@ module Aws::Omics
|
|
3418
3757
|
#
|
3419
3758
|
# resp = client.start_variant_import_job({
|
3420
3759
|
# destination_name: "StoreName", # required
|
3760
|
+
# role_arn: "Arn", # required
|
3421
3761
|
# items: [ # required
|
3422
3762
|
# {
|
3423
3763
|
# source: "S3Uri", # required
|
3424
3764
|
# },
|
3425
3765
|
# ],
|
3426
|
-
# role_arn: "Arn", # required
|
3427
3766
|
# run_left_normalization: false,
|
3767
|
+
# annotation_fields: {
|
3768
|
+
# "AnnotationFieldMapKeyString" => "AnnotationFieldMapValueString",
|
3769
|
+
# },
|
3428
3770
|
# })
|
3429
3771
|
#
|
3430
3772
|
# @example Response structure
|
@@ -3496,47 +3838,47 @@ module Aws::Omics
|
|
3496
3838
|
|
3497
3839
|
# Updates an annotation store.
|
3498
3840
|
#
|
3499
|
-
# @option params [String] :description
|
3500
|
-
# A description for the store.
|
3501
|
-
#
|
3502
3841
|
# @option params [required, String] :name
|
3503
3842
|
# A name for the store.
|
3504
3843
|
#
|
3844
|
+
# @option params [String] :description
|
3845
|
+
# A description for the store.
|
3846
|
+
#
|
3505
3847
|
# @return [Types::UpdateAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3506
3848
|
#
|
3507
|
-
# * {Types::UpdateAnnotationStoreResponse#creation_time #creation_time} => Time
|
3508
|
-
# * {Types::UpdateAnnotationStoreResponse#description #description} => String
|
3509
3849
|
# * {Types::UpdateAnnotationStoreResponse#id #id} => String
|
3510
|
-
# * {Types::UpdateAnnotationStoreResponse#name #name} => String
|
3511
3850
|
# * {Types::UpdateAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
|
3512
3851
|
# * {Types::UpdateAnnotationStoreResponse#status #status} => String
|
3513
|
-
# * {Types::UpdateAnnotationStoreResponse#
|
3514
|
-
# * {Types::UpdateAnnotationStoreResponse#
|
3852
|
+
# * {Types::UpdateAnnotationStoreResponse#name #name} => String
|
3853
|
+
# * {Types::UpdateAnnotationStoreResponse#description #description} => String
|
3854
|
+
# * {Types::UpdateAnnotationStoreResponse#creation_time #creation_time} => Time
|
3515
3855
|
# * {Types::UpdateAnnotationStoreResponse#update_time #update_time} => Time
|
3856
|
+
# * {Types::UpdateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
|
3857
|
+
# * {Types::UpdateAnnotationStoreResponse#store_format #store_format} => String
|
3516
3858
|
#
|
3517
3859
|
# @example Request syntax with placeholder values
|
3518
3860
|
#
|
3519
3861
|
# resp = client.update_annotation_store({
|
3520
|
-
# description: "StoreDescription",
|
3521
3862
|
# name: "String", # required
|
3863
|
+
# description: "StoreDescription",
|
3522
3864
|
# })
|
3523
3865
|
#
|
3524
3866
|
# @example Response structure
|
3525
3867
|
#
|
3526
|
-
# resp.creation_time #=> Time
|
3527
|
-
# resp.description #=> String
|
3528
3868
|
# resp.id #=> String
|
3529
|
-
# resp.name #=> String
|
3530
3869
|
# resp.reference.reference_arn #=> String
|
3531
3870
|
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
3532
|
-
# resp.
|
3871
|
+
# resp.name #=> String
|
3872
|
+
# resp.description #=> String
|
3873
|
+
# resp.creation_time #=> Time
|
3874
|
+
# resp.update_time #=> Time
|
3533
3875
|
# resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
|
3534
3876
|
# resp.store_options.tsv_store_options.format_to_header #=> Hash
|
3535
3877
|
# resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
|
3536
3878
|
# resp.store_options.tsv_store_options.schema #=> Array
|
3537
3879
|
# resp.store_options.tsv_store_options.schema[0] #=> Hash
|
3538
3880
|
# resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
|
3539
|
-
# resp.
|
3881
|
+
# resp.store_format #=> String, one of "GFF", "TSV", "VCF"
|
3540
3882
|
#
|
3541
3883
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateAnnotationStore AWS API Documentation
|
3542
3884
|
#
|
@@ -3552,17 +3894,20 @@ module Aws::Omics
|
|
3552
3894
|
# @option params [required, String] :id
|
3553
3895
|
# The group's ID.
|
3554
3896
|
#
|
3897
|
+
# @option params [String] :name
|
3898
|
+
# A name for the group.
|
3899
|
+
#
|
3555
3900
|
# @option params [Integer] :max_cpus
|
3556
3901
|
# The maximum number of CPUs to use.
|
3557
3902
|
#
|
3558
|
-
# @option params [Integer] :max_duration
|
3559
|
-
# A maximum run time for the group in minutes.
|
3560
|
-
#
|
3561
3903
|
# @option params [Integer] :max_runs
|
3562
3904
|
# The maximum number of concurrent runs for the group.
|
3563
3905
|
#
|
3564
|
-
# @option params [
|
3565
|
-
# A
|
3906
|
+
# @option params [Integer] :max_duration
|
3907
|
+
# A maximum run time for the group in minutes.
|
3908
|
+
#
|
3909
|
+
# @option params [Integer] :max_gpus
|
3910
|
+
# The maximum GPUs that can be used by a run group.
|
3566
3911
|
#
|
3567
3912
|
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
3568
3913
|
#
|
@@ -3570,10 +3915,11 @@ module Aws::Omics
|
|
3570
3915
|
#
|
3571
3916
|
# resp = client.update_run_group({
|
3572
3917
|
# id: "RunGroupId", # required
|
3918
|
+
# name: "RunGroupName",
|
3573
3919
|
# max_cpus: 1,
|
3574
|
-
# max_duration: 1,
|
3575
3920
|
# max_runs: 1,
|
3576
|
-
#
|
3921
|
+
# max_duration: 1,
|
3922
|
+
# max_gpus: 1,
|
3577
3923
|
# })
|
3578
3924
|
#
|
3579
3925
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateRunGroup AWS API Documentation
|
@@ -3587,37 +3933,37 @@ module Aws::Omics
|
|
3587
3933
|
|
3588
3934
|
# Updates a variant store.
|
3589
3935
|
#
|
3590
|
-
# @option params [String] :description
|
3591
|
-
# A description for the store.
|
3592
|
-
#
|
3593
3936
|
# @option params [required, String] :name
|
3594
3937
|
# A name for the store.
|
3595
3938
|
#
|
3939
|
+
# @option params [String] :description
|
3940
|
+
# A description for the store.
|
3941
|
+
#
|
3596
3942
|
# @return [Types::UpdateVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3597
3943
|
#
|
3598
|
-
# * {Types::UpdateVariantStoreResponse#creation_time #creation_time} => Time
|
3599
|
-
# * {Types::UpdateVariantStoreResponse#description #description} => String
|
3600
3944
|
# * {Types::UpdateVariantStoreResponse#id #id} => String
|
3601
|
-
# * {Types::UpdateVariantStoreResponse#name #name} => String
|
3602
3945
|
# * {Types::UpdateVariantStoreResponse#reference #reference} => Types::ReferenceItem
|
3603
3946
|
# * {Types::UpdateVariantStoreResponse#status #status} => String
|
3947
|
+
# * {Types::UpdateVariantStoreResponse#name #name} => String
|
3948
|
+
# * {Types::UpdateVariantStoreResponse#description #description} => String
|
3949
|
+
# * {Types::UpdateVariantStoreResponse#creation_time #creation_time} => Time
|
3604
3950
|
# * {Types::UpdateVariantStoreResponse#update_time #update_time} => Time
|
3605
3951
|
#
|
3606
3952
|
# @example Request syntax with placeholder values
|
3607
3953
|
#
|
3608
3954
|
# resp = client.update_variant_store({
|
3609
|
-
# description: "StoreDescription",
|
3610
3955
|
# name: "String", # required
|
3956
|
+
# description: "StoreDescription",
|
3611
3957
|
# })
|
3612
3958
|
#
|
3613
3959
|
# @example Response structure
|
3614
3960
|
#
|
3615
|
-
# resp.creation_time #=> Time
|
3616
|
-
# resp.description #=> String
|
3617
3961
|
# resp.id #=> String
|
3618
|
-
# resp.name #=> String
|
3619
3962
|
# resp.reference.reference_arn #=> String
|
3620
3963
|
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
3964
|
+
# resp.name #=> String
|
3965
|
+
# resp.description #=> String
|
3966
|
+
# resp.creation_time #=> Time
|
3621
3967
|
# resp.update_time #=> Time
|
3622
3968
|
#
|
3623
3969
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateVariantStore AWS API Documentation
|
@@ -3631,23 +3977,23 @@ module Aws::Omics
|
|
3631
3977
|
|
3632
3978
|
# Updates a workflow.
|
3633
3979
|
#
|
3634
|
-
# @option params [String] :description
|
3635
|
-
# A description for the workflow.
|
3636
|
-
#
|
3637
3980
|
# @option params [required, String] :id
|
3638
3981
|
# The workflow's ID.
|
3639
3982
|
#
|
3640
3983
|
# @option params [String] :name
|
3641
3984
|
# A name for the workflow.
|
3642
3985
|
#
|
3986
|
+
# @option params [String] :description
|
3987
|
+
# A description for the workflow.
|
3988
|
+
#
|
3643
3989
|
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
3644
3990
|
#
|
3645
3991
|
# @example Request syntax with placeholder values
|
3646
3992
|
#
|
3647
3993
|
# resp = client.update_workflow({
|
3648
|
-
# description: "WorkflowDescription",
|
3649
3994
|
# id: "WorkflowId", # required
|
3650
3995
|
# name: "WorkflowName",
|
3996
|
+
# description: "WorkflowDescription",
|
3651
3997
|
# })
|
3652
3998
|
#
|
3653
3999
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateWorkflow AWS API Documentation
|
@@ -3659,6 +4005,52 @@ module Aws::Omics
|
|
3659
4005
|
req.send_request(options)
|
3660
4006
|
end
|
3661
4007
|
|
4008
|
+
# This operation uploads a specific part of a read set. If you upload a
|
4009
|
+
# new part using a previously used part number, the previously uploaded
|
4010
|
+
# part will be overwritten.
|
4011
|
+
#
|
4012
|
+
# @option params [required, String] :sequence_store_id
|
4013
|
+
# The Sequence Store ID used for the multipart upload.
|
4014
|
+
#
|
4015
|
+
# @option params [required, String] :upload_id
|
4016
|
+
# The ID for the initiated multipart upload.
|
4017
|
+
#
|
4018
|
+
# @option params [required, String] :part_source
|
4019
|
+
# The source file for an upload part.
|
4020
|
+
#
|
4021
|
+
# @option params [required, Integer] :part_number
|
4022
|
+
# The number of the part being uploaded.
|
4023
|
+
#
|
4024
|
+
# @option params [required, String, IO] :payload
|
4025
|
+
# The read set data to upload for a part.
|
4026
|
+
#
|
4027
|
+
# @return [Types::UploadReadSetPartResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
4028
|
+
#
|
4029
|
+
# * {Types::UploadReadSetPartResponse#checksum #checksum} => String
|
4030
|
+
#
|
4031
|
+
# @example Request syntax with placeholder values
|
4032
|
+
#
|
4033
|
+
# resp = client.upload_read_set_part({
|
4034
|
+
# sequence_store_id: "SequenceStoreId", # required
|
4035
|
+
# upload_id: "UploadId", # required
|
4036
|
+
# part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2
|
4037
|
+
# part_number: 1, # required
|
4038
|
+
# payload: "data", # required
|
4039
|
+
# })
|
4040
|
+
#
|
4041
|
+
# @example Response structure
|
4042
|
+
#
|
4043
|
+
# resp.checksum #=> String
|
4044
|
+
#
|
4045
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UploadReadSetPart AWS API Documentation
|
4046
|
+
#
|
4047
|
+
# @overload upload_read_set_part(params = {})
|
4048
|
+
# @param [Hash] params ({})
|
4049
|
+
def upload_read_set_part(params = {}, options = {})
|
4050
|
+
req = build_request(:upload_read_set_part, params)
|
4051
|
+
req.send_request(options)
|
4052
|
+
end
|
4053
|
+
|
3662
4054
|
# @!endgroup
|
3663
4055
|
|
3664
4056
|
# @param params ({})
|
@@ -3672,7 +4064,7 @@ module Aws::Omics
|
|
3672
4064
|
params: params,
|
3673
4065
|
config: config)
|
3674
4066
|
context[:gem_name] = 'aws-sdk-omics'
|
3675
|
-
context[:gem_version] = '1.
|
4067
|
+
context[:gem_version] = '1.4.0'
|
3676
4068
|
Seahorse::Client::Request.new(handlers, context)
|
3677
4069
|
end
|
3678
4070
|
|