aws-sdk-omics 1.3.0 → 1.4.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +5 -0
- data/VERSION +1 -1
- data/lib/aws-sdk-omics/client.rb +1089 -697
- data/lib/aws-sdk-omics/client_api.rb +687 -302
- data/lib/aws-sdk-omics/endpoints.rb +84 -0
- data/lib/aws-sdk-omics/errors.rb +16 -0
- data/lib/aws-sdk-omics/plugins/endpoints.rb +12 -0
- data/lib/aws-sdk-omics/types.rb +2067 -1432
- data/lib/aws-sdk-omics.rb +2 -2
- metadata +2 -2
data/lib/aws-sdk-omics/client.rb
CHANGED
@@ -368,6 +368,32 @@ module Aws::Omics
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368
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# @!group API Operations
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+
# Stops a multipart upload.
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#
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# @option params [required, String] :sequence_store_id
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# The sequence store ID for the store involved in the multipart upload.
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#
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# @option params [required, String] :upload_id
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# The ID for the multipart upload.
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#
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# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
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#
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# @example Request syntax with placeholder values
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#
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# resp = client.abort_multipart_read_set_upload({
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# sequence_store_id: "SequenceStoreId", # required
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# upload_id: "UploadId", # required
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# })
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/AbortMultipartReadSetUpload AWS API Documentation
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#
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# @overload abort_multipart_read_set_upload(params = {})
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# @param [Hash] params ({})
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def abort_multipart_read_set_upload(params = {}, options = {})
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req = build_request(:abort_multipart_read_set_upload, params)
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req.send_request(options)
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end
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+
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# Deletes one or more read sets.
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#
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# @option params [required, Array<String>] :ids
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@@ -390,8 +416,8 @@ module Aws::Omics
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# @example Response structure
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#
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# resp.errors #=> Array
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-
# resp.errors[0].code #=> String
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# resp.errors[0].id #=> String
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+
# resp.errors[0].code #=> String
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# resp.errors[0].message #=> String
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/BatchDeleteReadSet AWS API Documentation
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@@ -469,16 +495,62 @@ module Aws::Omics
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req.send_request(options)
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end
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+
# Concludes a multipart upload once you have uploaded all the
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# components.
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#
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# @option params [required, String] :sequence_store_id
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# The sequence store ID for the store involved in the multipart upload.
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#
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# @option params [required, String] :upload_id
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# The ID for the multipart upload.
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#
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# @option params [required, Array<Types::CompleteReadSetUploadPartListItem>] :parts
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# The individual uploads or parts of a multipart upload.
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#
|
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# @return [Types::CompleteMultipartReadSetUploadResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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#
|
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# * {Types::CompleteMultipartReadSetUploadResponse#read_set_id #read_set_id} => String
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#
|
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# @example Request syntax with placeholder values
|
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#
|
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# resp = client.complete_multipart_read_set_upload({
|
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# sequence_store_id: "SequenceStoreId", # required
|
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# upload_id: "UploadId", # required
|
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# parts: [ # required
|
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# {
|
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# part_number: 1, # required
|
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# part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2
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# checksum: "String", # required
|
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# },
|
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# ],
|
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# })
|
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#
|
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# @example Response structure
|
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#
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# resp.read_set_id #=> String
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#
|
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CompleteMultipartReadSetUpload AWS API Documentation
|
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#
|
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+
# @overload complete_multipart_read_set_upload(params = {})
|
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# @param [Hash] params ({})
|
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def complete_multipart_read_set_upload(params = {}, options = {})
|
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req = build_request(:complete_multipart_read_set_upload, params)
|
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req.send_request(options)
|
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end
|
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+
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# Creates an annotation store.
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#
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-
# @option params [
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-
#
|
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# @option params [Types::ReferenceItem] :reference
|
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# The genome reference for the store's annotations.
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#
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# @option params [String] :name
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# A name for the store.
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#
|
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-
# @option params [
|
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-
#
|
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# @option params [String] :description
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# A description for the store.
|
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#
|
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# @option params [Hash<String,String>] :tags
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# Tags for the store.
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#
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# @option params [Types::SseConfig] :sse_config
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# Server-side encryption (SSE) settings for the store.
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@@ -489,30 +561,30 @@ module Aws::Omics
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# @option params [Types::StoreOptions] :store_options
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# File parsing options for the annotation store.
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#
|
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-
# @option params [Hash<String,String>] :tags
|
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-
# Tags for the store.
|
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-
#
|
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# @return [Types::CreateAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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#
|
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-
# * {Types::CreateAnnotationStoreResponse#creation_time #creation_time} => Time
|
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# * {Types::CreateAnnotationStoreResponse#id #id} => String
|
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-
# * {Types::CreateAnnotationStoreResponse#name #name} => String
|
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# * {Types::CreateAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
|
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-
# * {Types::CreateAnnotationStoreResponse#status #status} => String
|
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# * {Types::CreateAnnotationStoreResponse#store_format #store_format} => String
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# * {Types::CreateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
|
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+
# * {Types::CreateAnnotationStoreResponse#status #status} => String
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# * {Types::CreateAnnotationStoreResponse#name #name} => String
|
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# * {Types::CreateAnnotationStoreResponse#creation_time #creation_time} => Time
|
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#
|
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# @example Request syntax with placeholder values
|
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#
|
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# resp = client.create_annotation_store({
|
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-
# description: "StoreDescription",
|
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-
# name: "CreateAnnotationStoreRequestNameString",
|
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# reference: {
|
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# reference_arn: "ReferenceArn",
|
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# },
|
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# name: "CreateAnnotationStoreRequestNameString",
|
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# description: "StoreDescription",
|
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# tags: {
|
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# "TagKey" => "TagValue",
|
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# },
|
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# sse_config: {
|
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-
# key_arn: "SseConfigKeyArnString",
|
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# type: "KMS", # required, accepts KMS
|
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+
# key_arn: "SseConfigKeyArnString",
|
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# },
|
517
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# store_format: "GFF", # required, accepts GFF, TSV, VCF
|
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# store_options: {
|
@@ -528,18 +600,12 @@ module Aws::Omics
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# ],
|
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# },
|
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# },
|
531
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-
# tags: {
|
532
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-
# "TagKey" => "TagValue",
|
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-
# },
|
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# })
|
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#
|
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# @example Response structure
|
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#
|
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-
# resp.creation_time #=> Time
|
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# resp.id #=> String
|
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-
# resp.name #=> String
|
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# resp.reference.reference_arn #=> String
|
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-
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
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609
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# resp.store_format #=> String, one of "GFF", "TSV", "VCF"
|
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# resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
|
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# resp.store_options.tsv_store_options.format_to_header #=> Hash
|
@@ -547,6 +613,9 @@ module Aws::Omics
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# resp.store_options.tsv_store_options.schema #=> Array
|
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# resp.store_options.tsv_store_options.schema[0] #=> Hash
|
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# resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
|
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# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
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# resp.name #=> String
|
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# resp.creation_time #=> Time
|
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateAnnotationStore AWS API Documentation
|
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#
|
@@ -557,57 +626,146 @@ module Aws::Omics
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req.send_request(options)
|
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end
|
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|
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-
#
|
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+
# Begins a multipart read set upload.
|
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#
|
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# @option params [required, String] :sequence_store_id
|
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# The sequence store ID for the store that is the destination of the
|
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# multipart uploads.
|
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#
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# @option params [String] :client_token
|
563
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-
#
|
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-
#
|
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# An idempotency token that can be used to avoid triggering multiple
|
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# multipart uploads.
|
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#
|
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# @option params [required, String] :source_file_type
|
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# The type of file being uploaded.
|
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#
|
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# @option params [required, String] :subject_id
|
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# The source's subject ID.
|
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#
|
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# @option params [required, String] :sample_id
|
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# The source's sample ID.
|
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#
|
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# @option params [String] :generated_from
|
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# Where the source originated.
|
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#
|
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# @option params [required, String] :reference_arn
|
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# The ARN of the reference.
|
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#
|
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# @option params [required, String] :name
|
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# The name of the read set.
|
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#
|
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# @option params [String] :description
|
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-
#
|
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# The description of the read set.
|
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#
|
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# @option params [Hash<String,String>] :tags
|
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# Any tags to add to the read set.
|
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#
|
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+
# @return [Types::CreateMultipartReadSetUploadResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
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+
#
|
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+
# * {Types::CreateMultipartReadSetUploadResponse#sequence_store_id #sequence_store_id} => String
|
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+
# * {Types::CreateMultipartReadSetUploadResponse#upload_id #upload_id} => String
|
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+
# * {Types::CreateMultipartReadSetUploadResponse#source_file_type #source_file_type} => String
|
668
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+
# * {Types::CreateMultipartReadSetUploadResponse#subject_id #subject_id} => String
|
669
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+
# * {Types::CreateMultipartReadSetUploadResponse#sample_id #sample_id} => String
|
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# * {Types::CreateMultipartReadSetUploadResponse#generated_from #generated_from} => String
|
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# * {Types::CreateMultipartReadSetUploadResponse#reference_arn #reference_arn} => String
|
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+
# * {Types::CreateMultipartReadSetUploadResponse#name #name} => String
|
673
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+
# * {Types::CreateMultipartReadSetUploadResponse#description #description} => String
|
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+
# * {Types::CreateMultipartReadSetUploadResponse#tags #tags} => Hash<String,String>
|
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+
# * {Types::CreateMultipartReadSetUploadResponse#creation_time #creation_time} => Time
|
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+
#
|
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+
# @example Request syntax with placeholder values
|
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+
#
|
679
|
+
# resp = client.create_multipart_read_set_upload({
|
680
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+
# sequence_store_id: "SequenceStoreId", # required
|
681
|
+
# client_token: "ClientToken",
|
682
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+
# source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
|
683
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+
# subject_id: "SubjectId", # required
|
684
|
+
# sample_id: "SampleId", # required
|
685
|
+
# generated_from: "GeneratedFrom",
|
686
|
+
# reference_arn: "ReferenceArn", # required
|
687
|
+
# name: "ReadSetName", # required
|
688
|
+
# description: "ReadSetDescription",
|
689
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+
# tags: {
|
690
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+
# "TagKey" => "TagValue",
|
691
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+
# },
|
692
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+
# })
|
693
|
+
#
|
694
|
+
# @example Response structure
|
695
|
+
#
|
696
|
+
# resp.sequence_store_id #=> String
|
697
|
+
# resp.upload_id #=> String
|
698
|
+
# resp.source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
699
|
+
# resp.subject_id #=> String
|
700
|
+
# resp.sample_id #=> String
|
701
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+
# resp.generated_from #=> String
|
702
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+
# resp.reference_arn #=> String
|
703
|
+
# resp.name #=> String
|
704
|
+
# resp.description #=> String
|
705
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+
# resp.tags #=> Hash
|
706
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+
# resp.tags["TagKey"] #=> String
|
707
|
+
# resp.creation_time #=> Time
|
708
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+
#
|
709
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+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateMultipartReadSetUpload AWS API Documentation
|
710
|
+
#
|
711
|
+
# @overload create_multipart_read_set_upload(params = {})
|
712
|
+
# @param [Hash] params ({})
|
713
|
+
def create_multipart_read_set_upload(params = {}, options = {})
|
714
|
+
req = build_request(:create_multipart_read_set_upload, params)
|
715
|
+
req.send_request(options)
|
716
|
+
end
|
717
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+
|
718
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+
# Creates a reference store.
|
568
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#
|
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# @option params [required, String] :name
|
570
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# A name for the store.
|
571
722
|
#
|
723
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+
# @option params [String] :description
|
724
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+
# A description for the store.
|
725
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+
#
|
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|
# @option params [Types::SseConfig] :sse_config
|
573
727
|
# Server-side encryption (SSE) settings for the store.
|
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728
|
#
|
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|
# @option params [Hash<String,String>] :tags
|
576
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|
# Tags for the store.
|
577
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|
#
|
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|
+
# @option params [String] :client_token
|
733
|
+
# To ensure that requests don't run multiple times, specify a unique
|
734
|
+
# token for each request.
|
735
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+
#
|
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|
# @return [Types::CreateReferenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
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|
#
|
580
|
-
# * {Types::CreateReferenceStoreResponse#arn #arn} => String
|
581
|
-
# * {Types::CreateReferenceStoreResponse#creation_time #creation_time} => Time
|
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|
-
# * {Types::CreateReferenceStoreResponse#description #description} => String
|
583
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|
# * {Types::CreateReferenceStoreResponse#id #id} => String
|
739
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+
# * {Types::CreateReferenceStoreResponse#arn #arn} => String
|
584
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|
# * {Types::CreateReferenceStoreResponse#name #name} => String
|
741
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+
# * {Types::CreateReferenceStoreResponse#description #description} => String
|
585
742
|
# * {Types::CreateReferenceStoreResponse#sse_config #sse_config} => Types::SseConfig
|
743
|
+
# * {Types::CreateReferenceStoreResponse#creation_time #creation_time} => Time
|
586
744
|
#
|
587
745
|
# @example Request syntax with placeholder values
|
588
746
|
#
|
589
747
|
# resp = client.create_reference_store({
|
590
|
-
# client_token: "ClientToken",
|
591
|
-
# description: "ReferenceStoreDescription",
|
592
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|
# name: "ReferenceStoreName", # required
|
749
|
+
# description: "ReferenceStoreDescription",
|
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750
|
# sse_config: {
|
594
|
-
# key_arn: "SseConfigKeyArnString",
|
595
751
|
# type: "KMS", # required, accepts KMS
|
752
|
+
# key_arn: "SseConfigKeyArnString",
|
596
753
|
# },
|
597
754
|
# tags: {
|
598
755
|
# "TagKey" => "TagValue",
|
599
756
|
# },
|
757
|
+
# client_token: "ClientToken",
|
600
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|
# })
|
601
759
|
#
|
602
760
|
# @example Response structure
|
603
761
|
#
|
604
|
-
# resp.arn #=> String
|
605
|
-
# resp.creation_time #=> Time
|
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|
-
# resp.description #=> String
|
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762
|
# resp.id #=> String
|
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|
+
# resp.arn #=> String
|
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# resp.name #=> String
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# resp.
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# resp.description #=> String
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# resp.sse_config.type #=> String, one of "KMS"
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# resp.sse_config.key_arn #=> String
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# resp.creation_time #=> Time
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateReferenceStore AWS API Documentation
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#
|
@@ -620,17 +778,20 @@ module Aws::Omics
|
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# Creates a run group.
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#
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# @option params [String] :name
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# A name for the group.
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#
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# @option params [Integer] :max_cpus
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# The maximum number of CPUs to use in the group.
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#
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# @option params [Integer] :max_duration
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# A maximum run time for the group in minutes.
|
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-
#
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# @option params [Integer] :max_runs
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# The maximum number of concurrent runs for the group.
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#
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# @option params [
|
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-
# A
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# @option params [Integer] :max_duration
|
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+
# A maximum run time for the group in minutes.
|
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+
#
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# @option params [Hash<String,String>] :tags
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# Tags for the group.
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#
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# @option params [required, String] :request_id
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# To ensure that requests don't run multiple times, specify a unique ID
|
@@ -639,8 +800,8 @@ module Aws::Omics
|
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# **A suitable default value is auto-generated.** You should normally
|
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# not need to pass this option.**
|
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#
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# @option params [
|
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-
#
|
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+
# @option params [Integer] :max_gpus
|
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# The maximum GPUs that can be used by a run group.
|
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#
|
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|
# @return [Types::CreateRunGroupResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
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#
|
@@ -651,14 +812,15 @@ module Aws::Omics
|
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# @example Request syntax with placeholder values
|
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#
|
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|
# resp = client.create_run_group({
|
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+
# name: "RunGroupName",
|
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|
# max_cpus: 1,
|
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|
-
# max_duration: 1,
|
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|
# max_runs: 1,
|
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|
-
#
|
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|
-
# request_id: "RunGroupRequestId", # required
|
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+
# max_duration: 1,
|
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# tags: {
|
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# "TagKey" => "TagValue",
|
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# },
|
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# request_id: "RunGroupRequestId", # required
|
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+
# max_gpus: 1,
|
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|
# })
|
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|
#
|
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|
# @example Response structure
|
@@ -679,55 +841,62 @@ module Aws::Omics
|
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|
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|
# Creates a sequence store.
|
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|
#
|
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|
-
# @option params [String] :
|
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|
-
#
|
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|
-
# token for each request.
|
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|
+
# @option params [required, String] :name
|
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+
# A name for the store.
|
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|
#
|
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# @option params [String] :description
|
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# A description for the store.
|
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|
#
|
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|
-
# @option params [required, String] :name
|
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|
-
# A name for the store.
|
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|
-
#
|
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|
# @option params [Types::SseConfig] :sse_config
|
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|
# Server-side encryption (SSE) settings for the store.
|
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|
#
|
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|
# @option params [Hash<String,String>] :tags
|
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|
# Tags for the store.
|
697
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|
#
|
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|
+
# @option params [String] :client_token
|
857
|
+
# To ensure that requests don't run multiple times, specify a unique
|
858
|
+
# token for each request.
|
859
|
+
#
|
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|
+
# @option params [String] :fallback_location
|
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|
+
# An S3 location that is used to store files that have failed a direct
|
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|
+
# upload.
|
863
|
+
#
|
698
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|
# @return [Types::CreateSequenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
699
865
|
#
|
700
|
-
# * {Types::CreateSequenceStoreResponse#arn #arn} => String
|
701
|
-
# * {Types::CreateSequenceStoreResponse#creation_time #creation_time} => Time
|
702
|
-
# * {Types::CreateSequenceStoreResponse#description #description} => String
|
703
866
|
# * {Types::CreateSequenceStoreResponse#id #id} => String
|
867
|
+
# * {Types::CreateSequenceStoreResponse#arn #arn} => String
|
704
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|
# * {Types::CreateSequenceStoreResponse#name #name} => String
|
869
|
+
# * {Types::CreateSequenceStoreResponse#description #description} => String
|
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|
# * {Types::CreateSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig
|
871
|
+
# * {Types::CreateSequenceStoreResponse#creation_time #creation_time} => Time
|
872
|
+
# * {Types::CreateSequenceStoreResponse#fallback_location #fallback_location} => String
|
706
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|
#
|
707
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|
# @example Request syntax with placeholder values
|
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|
#
|
709
876
|
# resp = client.create_sequence_store({
|
710
|
-
# client_token: "ClientToken",
|
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|
-
# description: "SequenceStoreDescription",
|
712
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|
# name: "SequenceStoreName", # required
|
878
|
+
# description: "SequenceStoreDescription",
|
713
879
|
# sse_config: {
|
714
|
-
# key_arn: "SseConfigKeyArnString",
|
715
880
|
# type: "KMS", # required, accepts KMS
|
881
|
+
# key_arn: "SseConfigKeyArnString",
|
716
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|
# },
|
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|
# tags: {
|
718
884
|
# "TagKey" => "TagValue",
|
719
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|
# },
|
886
|
+
# client_token: "ClientToken",
|
887
|
+
# fallback_location: "S3Destination",
|
720
888
|
# })
|
721
889
|
#
|
722
890
|
# @example Response structure
|
723
891
|
#
|
724
|
-
# resp.arn #=> String
|
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|
-
# resp.creation_time #=> Time
|
726
|
-
# resp.description #=> String
|
727
892
|
# resp.id #=> String
|
893
|
+
# resp.arn #=> String
|
728
894
|
# resp.name #=> String
|
729
|
-
# resp.
|
895
|
+
# resp.description #=> String
|
730
896
|
# resp.sse_config.type #=> String, one of "KMS"
|
897
|
+
# resp.sse_config.key_arn #=> String
|
898
|
+
# resp.creation_time #=> Time
|
899
|
+
# resp.fallback_location #=> String
|
731
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|
#
|
732
901
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateSequenceStore AWS API Documentation
|
733
902
|
#
|
@@ -740,53 +909,53 @@ module Aws::Omics
|
|
740
909
|
|
741
910
|
# Creates a variant store.
|
742
911
|
#
|
743
|
-
# @option params [
|
744
|
-
#
|
912
|
+
# @option params [required, Types::ReferenceItem] :reference
|
913
|
+
# The genome reference for the store's variants.
|
745
914
|
#
|
746
915
|
# @option params [String] :name
|
747
916
|
# A name for the store.
|
748
917
|
#
|
749
|
-
# @option params [
|
750
|
-
#
|
751
|
-
#
|
752
|
-
# @option params [Types::SseConfig] :sse_config
|
753
|
-
# Server-side encryption (SSE) settings for the store.
|
918
|
+
# @option params [String] :description
|
919
|
+
# A description for the store.
|
754
920
|
#
|
755
921
|
# @option params [Hash<String,String>] :tags
|
756
922
|
# Tags for the store.
|
757
923
|
#
|
924
|
+
# @option params [Types::SseConfig] :sse_config
|
925
|
+
# Server-side encryption (SSE) settings for the store.
|
926
|
+
#
|
758
927
|
# @return [Types::CreateVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
759
928
|
#
|
760
|
-
# * {Types::CreateVariantStoreResponse#creation_time #creation_time} => Time
|
761
929
|
# * {Types::CreateVariantStoreResponse#id #id} => String
|
762
|
-
# * {Types::CreateVariantStoreResponse#name #name} => String
|
763
930
|
# * {Types::CreateVariantStoreResponse#reference #reference} => Types::ReferenceItem
|
764
931
|
# * {Types::CreateVariantStoreResponse#status #status} => String
|
932
|
+
# * {Types::CreateVariantStoreResponse#name #name} => String
|
933
|
+
# * {Types::CreateVariantStoreResponse#creation_time #creation_time} => Time
|
765
934
|
#
|
766
935
|
# @example Request syntax with placeholder values
|
767
936
|
#
|
768
937
|
# resp = client.create_variant_store({
|
769
|
-
# description: "StoreDescription",
|
770
|
-
# name: "CreateVariantStoreRequestNameString",
|
771
938
|
# reference: { # required
|
772
939
|
# reference_arn: "ReferenceArn",
|
773
940
|
# },
|
774
|
-
#
|
775
|
-
#
|
776
|
-
# type: "KMS", # required, accepts KMS
|
777
|
-
# },
|
941
|
+
# name: "CreateVariantStoreRequestNameString",
|
942
|
+
# description: "StoreDescription",
|
778
943
|
# tags: {
|
779
944
|
# "TagKey" => "TagValue",
|
780
945
|
# },
|
946
|
+
# sse_config: {
|
947
|
+
# type: "KMS", # required, accepts KMS
|
948
|
+
# key_arn: "SseConfigKeyArnString",
|
949
|
+
# },
|
781
950
|
# })
|
782
951
|
#
|
783
952
|
# @example Response structure
|
784
953
|
#
|
785
|
-
# resp.creation_time #=> Time
|
786
954
|
# resp.id #=> String
|
787
|
-
# resp.name #=> String
|
788
955
|
# resp.reference.reference_arn #=> String
|
789
956
|
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
957
|
+
# resp.name #=> String
|
958
|
+
# resp.creation_time #=> Time
|
790
959
|
#
|
791
960
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateVariantStore AWS API Documentation
|
792
961
|
#
|
@@ -799,11 +968,8 @@ module Aws::Omics
|
|
799
968
|
|
800
969
|
# Creates a workflow.
|
801
970
|
#
|
802
|
-
# @option params [String] :
|
803
|
-
#
|
804
|
-
#
|
805
|
-
# @option params [String, StringIO, File] :definition_zip
|
806
|
-
# A ZIP archive for the workflow.
|
971
|
+
# @option params [String] :name
|
972
|
+
# A name for the workflow.
|
807
973
|
#
|
808
974
|
# @option params [String] :description
|
809
975
|
# A description for the workflow.
|
@@ -811,28 +977,34 @@ module Aws::Omics
|
|
811
977
|
# @option params [String] :engine
|
812
978
|
# An engine for the workflow.
|
813
979
|
#
|
980
|
+
# @option params [String, StringIO, File] :definition_zip
|
981
|
+
# A ZIP archive for the workflow.
|
982
|
+
#
|
983
|
+
# @option params [String] :definition_uri
|
984
|
+
# The URI of a definition for the workflow.
|
985
|
+
#
|
814
986
|
# @option params [String] :main
|
815
987
|
# The path of the main definition file for the workflow.
|
816
988
|
#
|
817
|
-
# @option params [String] :name
|
818
|
-
# A name for the workflow.
|
819
|
-
#
|
820
989
|
# @option params [Hash<String,Types::WorkflowParameter>] :parameter_template
|
821
990
|
# A parameter template for the workflow.
|
822
991
|
#
|
823
|
-
# @option params [required, String] :request_id
|
824
|
-
# To ensure that requests don't run multiple times, specify a unique ID
|
825
|
-
# for each request.
|
826
|
-
#
|
827
|
-
# **A suitable default value is auto-generated.** You should normally
|
828
|
-
# not need to pass this option.**
|
829
|
-
#
|
830
992
|
# @option params [Integer] :storage_capacity
|
831
993
|
# A storage capacity for the workflow in gigabytes.
|
832
994
|
#
|
833
995
|
# @option params [Hash<String,String>] :tags
|
834
996
|
# Tags for the workflow.
|
835
997
|
#
|
998
|
+
# @option params [required, String] :request_id
|
999
|
+
# To ensure that requests don't run multiple times, specify a unique ID
|
1000
|
+
# for each request.
|
1001
|
+
#
|
1002
|
+
# **A suitable default value is auto-generated.** You should normally
|
1003
|
+
# not need to pass this option.**
|
1004
|
+
#
|
1005
|
+
# @option params [String] :accelerators
|
1006
|
+
# The computational accelerator specified to run the workflow.
|
1007
|
+
#
|
836
1008
|
# @return [Types::CreateWorkflowResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
837
1009
|
#
|
838
1010
|
# * {Types::CreateWorkflowResponse#arn #arn} => String
|
@@ -843,30 +1015,31 @@ module Aws::Omics
|
|
843
1015
|
# @example Request syntax with placeholder values
|
844
1016
|
#
|
845
1017
|
# resp = client.create_workflow({
|
846
|
-
#
|
847
|
-
# definition_zip: "data",
|
1018
|
+
# name: "WorkflowName",
|
848
1019
|
# description: "WorkflowDescription",
|
849
1020
|
# engine: "WDL", # accepts WDL, NEXTFLOW
|
1021
|
+
# definition_zip: "data",
|
1022
|
+
# definition_uri: "WorkflowDefinition",
|
850
1023
|
# main: "WorkflowMain",
|
851
|
-
# name: "WorkflowName",
|
852
1024
|
# parameter_template: {
|
853
1025
|
# "WorkflowParameterName" => {
|
854
1026
|
# description: "WorkflowParameterDescription",
|
855
1027
|
# optional: false,
|
856
1028
|
# },
|
857
1029
|
# },
|
858
|
-
# request_id: "WorkflowRequestId", # required
|
859
1030
|
# storage_capacity: 1,
|
860
1031
|
# tags: {
|
861
1032
|
# "TagKey" => "TagValue",
|
862
1033
|
# },
|
1034
|
+
# request_id: "WorkflowRequestId", # required
|
1035
|
+
# accelerators: "GPU", # accepts GPU
|
863
1036
|
# })
|
864
1037
|
#
|
865
1038
|
# @example Response structure
|
866
1039
|
#
|
867
1040
|
# resp.arn #=> String
|
868
1041
|
# resp.id #=> String
|
869
|
-
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
|
1042
|
+
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
|
870
1043
|
# resp.tags #=> Hash
|
871
1044
|
# resp.tags["TagKey"] #=> String
|
872
1045
|
#
|
@@ -881,12 +1054,12 @@ module Aws::Omics
|
|
881
1054
|
|
882
1055
|
# Deletes an annotation store.
|
883
1056
|
#
|
884
|
-
# @option params [Boolean] :force
|
885
|
-
# Whether to force deletion.
|
886
|
-
#
|
887
1057
|
# @option params [required, String] :name
|
888
1058
|
# The store's name.
|
889
1059
|
#
|
1060
|
+
# @option params [Boolean] :force
|
1061
|
+
# Whether to force deletion.
|
1062
|
+
#
|
890
1063
|
# @return [Types::DeleteAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
891
1064
|
#
|
892
1065
|
# * {Types::DeleteAnnotationStoreResponse#status #status} => String
|
@@ -894,8 +1067,8 @@ module Aws::Omics
|
|
894
1067
|
# @example Request syntax with placeholder values
|
895
1068
|
#
|
896
1069
|
# resp = client.delete_annotation_store({
|
897
|
-
# force: false,
|
898
1070
|
# name: "String", # required
|
1071
|
+
# force: false,
|
899
1072
|
# })
|
900
1073
|
#
|
901
1074
|
# @example Response structure
|
@@ -1027,12 +1200,12 @@ module Aws::Omics
|
|
1027
1200
|
|
1028
1201
|
# Deletes a variant store.
|
1029
1202
|
#
|
1030
|
-
# @option params [Boolean] :force
|
1031
|
-
# Whether to force deletion.
|
1032
|
-
#
|
1033
1203
|
# @option params [required, String] :name
|
1034
1204
|
# The store's name.
|
1035
1205
|
#
|
1206
|
+
# @option params [Boolean] :force
|
1207
|
+
# Whether to force deletion.
|
1208
|
+
#
|
1036
1209
|
# @return [Types::DeleteVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1037
1210
|
#
|
1038
1211
|
# * {Types::DeleteVariantStoreResponse#status #status} => String
|
@@ -1040,8 +1213,8 @@ module Aws::Omics
|
|
1040
1213
|
# @example Request syntax with placeholder values
|
1041
1214
|
#
|
1042
1215
|
# resp = client.delete_variant_store({
|
1043
|
-
# force: false,
|
1044
1216
|
# name: "String", # required
|
1217
|
+
# force: false,
|
1045
1218
|
# })
|
1046
1219
|
#
|
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|
# @example Response structure
|
@@ -1086,17 +1259,18 @@ module Aws::Omics
|
|
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#
|
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# @return [Types::GetAnnotationImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
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|
#
|
1089
|
-
# * {Types::GetAnnotationImportResponse#completion_time #completion_time} => Time
|
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-
# * {Types::GetAnnotationImportResponse#creation_time #creation_time} => Time
|
1091
|
-
# * {Types::GetAnnotationImportResponse#destination_name #destination_name} => String
|
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|
-
# * {Types::GetAnnotationImportResponse#format_options #format_options} => Types::FormatOptions
|
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|
# * {Types::GetAnnotationImportResponse#id #id} => String
|
1094
|
-
# * {Types::GetAnnotationImportResponse#
|
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+
# * {Types::GetAnnotationImportResponse#destination_name #destination_name} => String
|
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|
# * {Types::GetAnnotationImportResponse#role_arn #role_arn} => String
|
1096
|
-
# * {Types::GetAnnotationImportResponse#run_left_normalization #run_left_normalization} => Boolean
|
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|
# * {Types::GetAnnotationImportResponse#status #status} => String
|
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# * {Types::GetAnnotationImportResponse#status_message #status_message} => String
|
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+
# * {Types::GetAnnotationImportResponse#creation_time #creation_time} => Time
|
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|
# * {Types::GetAnnotationImportResponse#update_time #update_time} => Time
|
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|
+
# * {Types::GetAnnotationImportResponse#completion_time #completion_time} => Time
|
1270
|
+
# * {Types::GetAnnotationImportResponse#items #items} => Array<Types::AnnotationImportItemDetail>
|
1271
|
+
# * {Types::GetAnnotationImportResponse#run_left_normalization #run_left_normalization} => Boolean
|
1272
|
+
# * {Types::GetAnnotationImportResponse#format_options #format_options} => Types::FormatOptions
|
1273
|
+
# * {Types::GetAnnotationImportResponse#annotation_fields #annotation_fields} => Hash<String,String>
|
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|
#
|
1101
1275
|
# @example Request syntax with placeholder values
|
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|
#
|
@@ -1106,29 +1280,31 @@ module Aws::Omics
|
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#
|
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# @example Response structure
|
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#
|
1109
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-
# resp.
|
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-
# resp.creation_time #=> Time
|
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+
# resp.id #=> String
|
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1284
|
# resp.destination_name #=> String
|
1112
|
-
# resp.
|
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+
# resp.role_arn #=> String
|
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+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
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+
# resp.status_message #=> String
|
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+
# resp.creation_time #=> Time
|
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+
# resp.update_time #=> Time
|
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+
# resp.completion_time #=> Time
|
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+
# resp.items #=> Array
|
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+
# resp.items[0].source #=> String
|
1293
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+
# resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
1294
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+
# resp.run_left_normalization #=> Boolean
|
1295
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+
# resp.format_options.tsv_options.read_options.sep #=> String
|
1113
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# resp.format_options.tsv_options.read_options.encoding #=> String
|
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+
# resp.format_options.tsv_options.read_options.quote #=> String
|
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+
# resp.format_options.tsv_options.read_options.quote_all #=> Boolean
|
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# resp.format_options.tsv_options.read_options.escape #=> String
|
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|
# resp.format_options.tsv_options.read_options.escape_quotes #=> Boolean
|
1301
|
+
# resp.format_options.tsv_options.read_options.comment #=> String
|
1116
1302
|
# resp.format_options.tsv_options.read_options.header #=> Boolean
|
1117
1303
|
# resp.format_options.tsv_options.read_options.line_sep #=> String
|
1118
|
-
# resp.format_options.tsv_options.read_options.quote #=> String
|
1119
|
-
# resp.format_options.tsv_options.read_options.quote_all #=> Boolean
|
1120
|
-
# resp.format_options.tsv_options.read_options.sep #=> String
|
1121
|
-
# resp.format_options.vcf_options.ignore_filter_field #=> Boolean
|
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1304
|
# resp.format_options.vcf_options.ignore_qual_field #=> Boolean
|
1123
|
-
# resp.
|
1124
|
-
# resp.
|
1125
|
-
# resp.
|
1126
|
-
# resp.items[0].source #=> String
|
1127
|
-
# resp.role_arn #=> String
|
1128
|
-
# resp.run_left_normalization #=> Boolean
|
1129
|
-
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
1130
|
-
# resp.status_message #=> String
|
1131
|
-
# resp.update_time #=> Time
|
1305
|
+
# resp.format_options.vcf_options.ignore_filter_field #=> Boolean
|
1306
|
+
# resp.annotation_fields #=> Hash
|
1307
|
+
# resp.annotation_fields["AnnotationFieldMapKeyString"] #=> String
|
1132
1308
|
#
|
1133
1309
|
#
|
1134
1310
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1151,20 +1327,20 @@ module Aws::Omics
|
|
1151
1327
|
#
|
1152
1328
|
# @return [Types::GetAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1153
1329
|
#
|
1154
|
-
# * {Types::GetAnnotationStoreResponse#creation_time #creation_time} => Time
|
1155
|
-
# * {Types::GetAnnotationStoreResponse#description #description} => String
|
1156
1330
|
# * {Types::GetAnnotationStoreResponse#id #id} => String
|
1157
|
-
# * {Types::GetAnnotationStoreResponse#name #name} => String
|
1158
1331
|
# * {Types::GetAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
|
1159
|
-
# * {Types::GetAnnotationStoreResponse#sse_config #sse_config} => Types::SseConfig
|
1160
1332
|
# * {Types::GetAnnotationStoreResponse#status #status} => String
|
1161
|
-
# * {Types::GetAnnotationStoreResponse#status_message #status_message} => String
|
1162
1333
|
# * {Types::GetAnnotationStoreResponse#store_arn #store_arn} => String
|
1163
|
-
# * {Types::GetAnnotationStoreResponse#
|
1334
|
+
# * {Types::GetAnnotationStoreResponse#name #name} => String
|
1335
|
+
# * {Types::GetAnnotationStoreResponse#description #description} => String
|
1336
|
+
# * {Types::GetAnnotationStoreResponse#sse_config #sse_config} => Types::SseConfig
|
1337
|
+
# * {Types::GetAnnotationStoreResponse#creation_time #creation_time} => Time
|
1338
|
+
# * {Types::GetAnnotationStoreResponse#update_time #update_time} => Time
|
1339
|
+
# * {Types::GetAnnotationStoreResponse#tags #tags} => Hash<String,String>
|
1164
1340
|
# * {Types::GetAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
|
1341
|
+
# * {Types::GetAnnotationStoreResponse#store_format #store_format} => String
|
1342
|
+
# * {Types::GetAnnotationStoreResponse#status_message #status_message} => String
|
1165
1343
|
# * {Types::GetAnnotationStoreResponse#store_size_bytes #store_size_bytes} => Integer
|
1166
|
-
# * {Types::GetAnnotationStoreResponse#tags #tags} => Hash<String,String>
|
1167
|
-
# * {Types::GetAnnotationStoreResponse#update_time #update_time} => Time
|
1168
1344
|
#
|
1169
1345
|
# @example Request syntax with placeholder values
|
1170
1346
|
#
|
@@ -1174,27 +1350,27 @@ module Aws::Omics
|
|
1174
1350
|
#
|
1175
1351
|
# @example Response structure
|
1176
1352
|
#
|
1177
|
-
# resp.creation_time #=> Time
|
1178
|
-
# resp.description #=> String
|
1179
1353
|
# resp.id #=> String
|
1180
|
-
# resp.name #=> String
|
1181
1354
|
# resp.reference.reference_arn #=> String
|
1182
|
-
# resp.sse_config.key_arn #=> String
|
1183
|
-
# resp.sse_config.type #=> String, one of "KMS"
|
1184
1355
|
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
1185
|
-
# resp.status_message #=> String
|
1186
1356
|
# resp.store_arn #=> String
|
1187
|
-
# resp.
|
1357
|
+
# resp.name #=> String
|
1358
|
+
# resp.description #=> String
|
1359
|
+
# resp.sse_config.type #=> String, one of "KMS"
|
1360
|
+
# resp.sse_config.key_arn #=> String
|
1361
|
+
# resp.creation_time #=> Time
|
1362
|
+
# resp.update_time #=> Time
|
1363
|
+
# resp.tags #=> Hash
|
1364
|
+
# resp.tags["TagKey"] #=> String
|
1188
1365
|
# resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
|
1189
1366
|
# resp.store_options.tsv_store_options.format_to_header #=> Hash
|
1190
1367
|
# resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
|
1191
1368
|
# resp.store_options.tsv_store_options.schema #=> Array
|
1192
1369
|
# resp.store_options.tsv_store_options.schema[0] #=> Hash
|
1193
1370
|
# resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
|
1371
|
+
# resp.store_format #=> String, one of "GFF", "TSV", "VCF"
|
1372
|
+
# resp.status_message #=> String
|
1194
1373
|
# resp.store_size_bytes #=> Integer
|
1195
|
-
# resp.tags #=> Hash
|
1196
|
-
# resp.tags["TagKey"] #=> String
|
1197
|
-
# resp.update_time #=> Time
|
1198
1374
|
#
|
1199
1375
|
#
|
1200
1376
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1213,18 +1389,18 @@ module Aws::Omics
|
|
1213
1389
|
|
1214
1390
|
# Gets a file from a read set.
|
1215
1391
|
#
|
1216
|
-
# @option params [String] :file
|
1217
|
-
# The file to retrieve.
|
1218
|
-
#
|
1219
1392
|
# @option params [required, String] :id
|
1220
1393
|
# The read set's ID.
|
1221
1394
|
#
|
1222
|
-
# @option params [required, Integer] :part_number
|
1223
|
-
# The part number to retrieve.
|
1224
|
-
#
|
1225
1395
|
# @option params [required, String] :sequence_store_id
|
1226
1396
|
# The read set's sequence store ID.
|
1227
1397
|
#
|
1398
|
+
# @option params [String] :file
|
1399
|
+
# The file to retrieve.
|
1400
|
+
#
|
1401
|
+
# @option params [required, Integer] :part_number
|
1402
|
+
# The part number to retrieve.
|
1403
|
+
#
|
1228
1404
|
# @return [Types::GetReadSetResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1229
1405
|
#
|
1230
1406
|
# * {Types::GetReadSetResponse#payload #payload} => IO
|
@@ -1232,10 +1408,10 @@ module Aws::Omics
|
|
1232
1408
|
# @example Request syntax with placeholder values
|
1233
1409
|
#
|
1234
1410
|
# resp = client.get_read_set({
|
1235
|
-
# file: "SOURCE1", # accepts SOURCE1, SOURCE2, INDEX
|
1236
1411
|
# id: "ReadSetId", # required
|
1237
|
-
# part_number: 1, # required
|
1238
1412
|
# sequence_store_id: "SequenceStoreId", # required
|
1413
|
+
# file: "SOURCE1", # accepts SOURCE1, SOURCE2, INDEX
|
1414
|
+
# part_number: 1, # required
|
1239
1415
|
# })
|
1240
1416
|
#
|
1241
1417
|
# @example Response structure
|
@@ -1261,13 +1437,13 @@ module Aws::Omics
|
|
1261
1437
|
#
|
1262
1438
|
# @return [Types::GetReadSetActivationJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1263
1439
|
#
|
1264
|
-
# * {Types::GetReadSetActivationJobResponse#completion_time #completion_time} => Time
|
1265
|
-
# * {Types::GetReadSetActivationJobResponse#creation_time #creation_time} => Time
|
1266
1440
|
# * {Types::GetReadSetActivationJobResponse#id #id} => String
|
1267
1441
|
# * {Types::GetReadSetActivationJobResponse#sequence_store_id #sequence_store_id} => String
|
1268
|
-
# * {Types::GetReadSetActivationJobResponse#sources #sources} => Array<Types::ActivateReadSetSourceItem>
|
1269
1442
|
# * {Types::GetReadSetActivationJobResponse#status #status} => String
|
1270
1443
|
# * {Types::GetReadSetActivationJobResponse#status_message #status_message} => String
|
1444
|
+
# * {Types::GetReadSetActivationJobResponse#creation_time #creation_time} => Time
|
1445
|
+
# * {Types::GetReadSetActivationJobResponse#completion_time #completion_time} => Time
|
1446
|
+
# * {Types::GetReadSetActivationJobResponse#sources #sources} => Array<Types::ActivateReadSetSourceItem>
|
1271
1447
|
#
|
1272
1448
|
# @example Request syntax with placeholder values
|
1273
1449
|
#
|
@@ -1278,16 +1454,16 @@ module Aws::Omics
|
|
1278
1454
|
#
|
1279
1455
|
# @example Response structure
|
1280
1456
|
#
|
1281
|
-
# resp.completion_time #=> Time
|
1282
|
-
# resp.creation_time #=> Time
|
1283
1457
|
# resp.id #=> String
|
1284
1458
|
# resp.sequence_store_id #=> String
|
1459
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1460
|
+
# resp.status_message #=> String
|
1461
|
+
# resp.creation_time #=> Time
|
1462
|
+
# resp.completion_time #=> Time
|
1285
1463
|
# resp.sources #=> Array
|
1286
1464
|
# resp.sources[0].read_set_id #=> String
|
1287
1465
|
# resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
|
1288
1466
|
# resp.sources[0].status_message #=> String
|
1289
|
-
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1290
|
-
# resp.status_message #=> String
|
1291
1467
|
#
|
1292
1468
|
#
|
1293
1469
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1305,43 +1481,43 @@ module Aws::Omics
|
|
1305
1481
|
|
1306
1482
|
# Gets information about a read set export job.
|
1307
1483
|
#
|
1308
|
-
# @option params [required, String] :id
|
1309
|
-
# The job's ID.
|
1310
|
-
#
|
1311
1484
|
# @option params [required, String] :sequence_store_id
|
1312
1485
|
# The job's sequence store ID.
|
1313
1486
|
#
|
1487
|
+
# @option params [required, String] :id
|
1488
|
+
# The job's ID.
|
1489
|
+
#
|
1314
1490
|
# @return [Types::GetReadSetExportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1315
1491
|
#
|
1316
|
-
# * {Types::GetReadSetExportJobResponse#completion_time #completion_time} => Time
|
1317
|
-
# * {Types::GetReadSetExportJobResponse#creation_time #creation_time} => Time
|
1318
|
-
# * {Types::GetReadSetExportJobResponse#destination #destination} => String
|
1319
1492
|
# * {Types::GetReadSetExportJobResponse#id #id} => String
|
1320
|
-
# * {Types::GetReadSetExportJobResponse#read_sets #read_sets} => Array<Types::ExportReadSetDetail>
|
1321
1493
|
# * {Types::GetReadSetExportJobResponse#sequence_store_id #sequence_store_id} => String
|
1494
|
+
# * {Types::GetReadSetExportJobResponse#destination #destination} => String
|
1322
1495
|
# * {Types::GetReadSetExportJobResponse#status #status} => String
|
1323
1496
|
# * {Types::GetReadSetExportJobResponse#status_message #status_message} => String
|
1497
|
+
# * {Types::GetReadSetExportJobResponse#creation_time #creation_time} => Time
|
1498
|
+
# * {Types::GetReadSetExportJobResponse#completion_time #completion_time} => Time
|
1499
|
+
# * {Types::GetReadSetExportJobResponse#read_sets #read_sets} => Array<Types::ExportReadSetDetail>
|
1324
1500
|
#
|
1325
1501
|
# @example Request syntax with placeholder values
|
1326
1502
|
#
|
1327
1503
|
# resp = client.get_read_set_export_job({
|
1328
|
-
# id: "ExportJobId", # required
|
1329
1504
|
# sequence_store_id: "SequenceStoreId", # required
|
1505
|
+
# id: "ExportJobId", # required
|
1330
1506
|
# })
|
1331
1507
|
#
|
1332
1508
|
# @example Response structure
|
1333
1509
|
#
|
1334
|
-
# resp.completion_time #=> Time
|
1335
|
-
# resp.creation_time #=> Time
|
1336
|
-
# resp.destination #=> String
|
1337
1510
|
# resp.id #=> String
|
1511
|
+
# resp.sequence_store_id #=> String
|
1512
|
+
# resp.destination #=> String
|
1513
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1514
|
+
# resp.status_message #=> String
|
1515
|
+
# resp.creation_time #=> Time
|
1516
|
+
# resp.completion_time #=> Time
|
1338
1517
|
# resp.read_sets #=> Array
|
1339
1518
|
# resp.read_sets[0].id #=> String
|
1340
1519
|
# resp.read_sets[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
|
1341
1520
|
# resp.read_sets[0].status_message #=> String
|
1342
|
-
# resp.sequence_store_id #=> String
|
1343
|
-
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1344
|
-
# resp.status_message #=> String
|
1345
1521
|
#
|
1346
1522
|
#
|
1347
1523
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1367,14 +1543,14 @@ module Aws::Omics
|
|
1367
1543
|
#
|
1368
1544
|
# @return [Types::GetReadSetImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1369
1545
|
#
|
1370
|
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# * {Types::GetReadSetImportJobResponse#completion_time #completion_time} => Time
|
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|
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# * {Types::GetReadSetImportJobResponse#creation_time #creation_time} => Time
|
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|
# * {Types::GetReadSetImportJobResponse#id #id} => String
|
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|
-
# * {Types::GetReadSetImportJobResponse#role_arn #role_arn} => String
|
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|
# * {Types::GetReadSetImportJobResponse#sequence_store_id #sequence_store_id} => String
|
1375
|
-
# * {Types::GetReadSetImportJobResponse#
|
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|
+
# * {Types::GetReadSetImportJobResponse#role_arn #role_arn} => String
|
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|
# * {Types::GetReadSetImportJobResponse#status #status} => String
|
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|
# * {Types::GetReadSetImportJobResponse#status_message #status_message} => String
|
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|
+
# * {Types::GetReadSetImportJobResponse#creation_time #creation_time} => Time
|
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|
+
# * {Types::GetReadSetImportJobResponse#completion_time #completion_time} => Time
|
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|
+
# * {Types::GetReadSetImportJobResponse#sources #sources} => Array<Types::ImportReadSetSourceItem>
|
1378
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|
#
|
1379
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|
# @example Request syntax with placeholder values
|
1380
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|
#
|
@@ -1385,27 +1561,27 @@ module Aws::Omics
|
|
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|
#
|
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|
# @example Response structure
|
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|
#
|
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|
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# resp.completion_time #=> Time
|
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|
-
# resp.creation_time #=> Time
|
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|
# resp.id #=> String
|
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|
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# resp.role_arn #=> String
|
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|
# resp.sequence_store_id #=> String
|
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+
# resp.role_arn #=> String
|
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|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
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|
+
# resp.status_message #=> String
|
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|
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# resp.creation_time #=> Time
|
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|
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# resp.completion_time #=> Time
|
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|
# resp.sources #=> Array
|
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|
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# resp.sources[0].description #=> String
|
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|
-
# resp.sources[0].generated_from #=> String
|
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|
-
# resp.sources[0].name #=> String
|
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|
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# resp.sources[0].reference_arn #=> String
|
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|
-
# resp.sources[0].sample_id #=> String
|
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|
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# resp.sources[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
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|
# resp.sources[0].source_files.source1 #=> String
|
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|
# resp.sources[0].source_files.source2 #=> String
|
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|
+
# resp.sources[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
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|
# resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
|
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|
# resp.sources[0].status_message #=> String
|
1404
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|
# resp.sources[0].subject_id #=> String
|
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|
+
# resp.sources[0].sample_id #=> String
|
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|
+
# resp.sources[0].generated_from #=> String
|
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|
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# resp.sources[0].reference_arn #=> String
|
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|
+
# resp.sources[0].name #=> String
|
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|
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# resp.sources[0].description #=> String
|
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|
# resp.sources[0].tags #=> Hash
|
1406
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|
# resp.sources[0].tags["TagKey"] #=> String
|
1407
|
-
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1408
|
-
# resp.status_message #=> String
|
1409
1585
|
#
|
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1586
|
#
|
1411
1587
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1431,19 +1607,20 @@ module Aws::Omics
|
|
1431
1607
|
#
|
1432
1608
|
# @return [Types::GetReadSetMetadataResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1433
1609
|
#
|
1610
|
+
# * {Types::GetReadSetMetadataResponse#id #id} => String
|
1434
1611
|
# * {Types::GetReadSetMetadataResponse#arn #arn} => String
|
1435
|
-
# * {Types::GetReadSetMetadataResponse#
|
1612
|
+
# * {Types::GetReadSetMetadataResponse#sequence_store_id #sequence_store_id} => String
|
1613
|
+
# * {Types::GetReadSetMetadataResponse#subject_id #subject_id} => String
|
1614
|
+
# * {Types::GetReadSetMetadataResponse#sample_id #sample_id} => String
|
1615
|
+
# * {Types::GetReadSetMetadataResponse#status #status} => String
|
1616
|
+
# * {Types::GetReadSetMetadataResponse#name #name} => String
|
1436
1617
|
# * {Types::GetReadSetMetadataResponse#description #description} => String
|
1437
1618
|
# * {Types::GetReadSetMetadataResponse#file_type #file_type} => String
|
1438
|
-
# * {Types::GetReadSetMetadataResponse#
|
1439
|
-
# * {Types::GetReadSetMetadataResponse#id #id} => String
|
1440
|
-
# * {Types::GetReadSetMetadataResponse#name #name} => String
|
1441
|
-
# * {Types::GetReadSetMetadataResponse#reference_arn #reference_arn} => String
|
1442
|
-
# * {Types::GetReadSetMetadataResponse#sample_id #sample_id} => String
|
1619
|
+
# * {Types::GetReadSetMetadataResponse#creation_time #creation_time} => Time
|
1443
1620
|
# * {Types::GetReadSetMetadataResponse#sequence_information #sequence_information} => Types::SequenceInformation
|
1444
|
-
# * {Types::GetReadSetMetadataResponse#
|
1445
|
-
# * {Types::GetReadSetMetadataResponse#
|
1446
|
-
# * {Types::GetReadSetMetadataResponse#
|
1621
|
+
# * {Types::GetReadSetMetadataResponse#reference_arn #reference_arn} => String
|
1622
|
+
# * {Types::GetReadSetMetadataResponse#files #files} => Types::ReadSetFiles
|
1623
|
+
# * {Types::GetReadSetMetadataResponse#status_message #status_message} => String
|
1447
1624
|
#
|
1448
1625
|
# @example Request syntax with placeholder values
|
1449
1626
|
#
|
@@ -1454,33 +1631,34 @@ module Aws::Omics
|
|
1454
1631
|
#
|
1455
1632
|
# @example Response structure
|
1456
1633
|
#
|
1634
|
+
# resp.id #=> String
|
1457
1635
|
# resp.arn #=> String
|
1458
|
-
# resp.
|
1636
|
+
# resp.sequence_store_id #=> String
|
1637
|
+
# resp.subject_id #=> String
|
1638
|
+
# resp.sample_id #=> String
|
1639
|
+
# resp.status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "PROCESSING_UPLOAD", "UPLOAD_FAILED"
|
1640
|
+
# resp.name #=> String
|
1459
1641
|
# resp.description #=> String
|
1460
1642
|
# resp.file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
1461
|
-
# resp.
|
1462
|
-
# resp.
|
1463
|
-
# resp.
|
1464
|
-
# resp.
|
1465
|
-
# resp.
|
1643
|
+
# resp.creation_time #=> Time
|
1644
|
+
# resp.sequence_information.total_read_count #=> Integer
|
1645
|
+
# resp.sequence_information.total_base_count #=> Integer
|
1646
|
+
# resp.sequence_information.generated_from #=> String
|
1647
|
+
# resp.sequence_information.alignment #=> String
|
1648
|
+
# resp.reference_arn #=> String
|
1466
1649
|
# resp.files.source1.total_parts #=> Integer
|
1467
|
-
# resp.files.
|
1468
|
-
# resp.files.
|
1650
|
+
# resp.files.source1.part_size #=> Integer
|
1651
|
+
# resp.files.source1.content_length #=> Integer
|
1469
1652
|
# resp.files.source2.total_parts #=> Integer
|
1470
|
-
# resp.
|
1471
|
-
# resp.
|
1472
|
-
# resp.
|
1473
|
-
# resp.
|
1474
|
-
# resp.
|
1475
|
-
# resp.
|
1476
|
-
#
|
1477
|
-
#
|
1478
|
-
#
|
1479
|
-
# resp.status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED"
|
1480
|
-
# resp.subject_id #=> String
|
1481
|
-
#
|
1482
|
-
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetMetadata AWS API Documentation
|
1483
|
-
#
|
1653
|
+
# resp.files.source2.part_size #=> Integer
|
1654
|
+
# resp.files.source2.content_length #=> Integer
|
1655
|
+
# resp.files.index.total_parts #=> Integer
|
1656
|
+
# resp.files.index.part_size #=> Integer
|
1657
|
+
# resp.files.index.content_length #=> Integer
|
1658
|
+
# resp.status_message #=> String
|
1659
|
+
#
|
1660
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetMetadata AWS API Documentation
|
1661
|
+
#
|
1484
1662
|
# @overload get_read_set_metadata(params = {})
|
1485
1663
|
# @param [Hash] params ({})
|
1486
1664
|
def get_read_set_metadata(params = {}, options = {})
|
@@ -1490,20 +1668,20 @@ module Aws::Omics
|
|
1490
1668
|
|
1491
1669
|
# Gets a reference file.
|
1492
1670
|
#
|
1493
|
-
# @option params [String] :file
|
1494
|
-
# The file to retrieve.
|
1495
|
-
#
|
1496
1671
|
# @option params [required, String] :id
|
1497
1672
|
# The reference's ID.
|
1498
1673
|
#
|
1499
|
-
# @option params [required,
|
1500
|
-
# The
|
1674
|
+
# @option params [required, String] :reference_store_id
|
1675
|
+
# The reference's store ID.
|
1501
1676
|
#
|
1502
1677
|
# @option params [String] :range
|
1503
1678
|
# The range to retrieve.
|
1504
1679
|
#
|
1505
|
-
# @option params [required,
|
1506
|
-
# The
|
1680
|
+
# @option params [required, Integer] :part_number
|
1681
|
+
# The part number to retrieve.
|
1682
|
+
#
|
1683
|
+
# @option params [String] :file
|
1684
|
+
# The file to retrieve.
|
1507
1685
|
#
|
1508
1686
|
# @return [Types::GetReferenceResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1509
1687
|
#
|
@@ -1512,11 +1690,11 @@ module Aws::Omics
|
|
1512
1690
|
# @example Request syntax with placeholder values
|
1513
1691
|
#
|
1514
1692
|
# resp = client.get_reference({
|
1515
|
-
# file: "SOURCE", # accepts SOURCE, INDEX
|
1516
1693
|
# id: "ReferenceId", # required
|
1517
|
-
# part_number: 1, # required
|
1518
|
-
# range: "Range",
|
1519
1694
|
# reference_store_id: "ReferenceStoreId", # required
|
1695
|
+
# range: "Range",
|
1696
|
+
# part_number: 1, # required
|
1697
|
+
# file: "SOURCE", # accepts SOURCE, INDEX
|
1520
1698
|
# })
|
1521
1699
|
#
|
1522
1700
|
# @example Response structure
|
@@ -1542,14 +1720,14 @@ module Aws::Omics
|
|
1542
1720
|
#
|
1543
1721
|
# @return [Types::GetReferenceImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1544
1722
|
#
|
1545
|
-
# * {Types::GetReferenceImportJobResponse#completion_time #completion_time} => Time
|
1546
|
-
# * {Types::GetReferenceImportJobResponse#creation_time #creation_time} => Time
|
1547
1723
|
# * {Types::GetReferenceImportJobResponse#id #id} => String
|
1548
1724
|
# * {Types::GetReferenceImportJobResponse#reference_store_id #reference_store_id} => String
|
1549
1725
|
# * {Types::GetReferenceImportJobResponse#role_arn #role_arn} => String
|
1550
|
-
# * {Types::GetReferenceImportJobResponse#sources #sources} => Array<Types::ImportReferenceSourceItem>
|
1551
1726
|
# * {Types::GetReferenceImportJobResponse#status #status} => String
|
1552
1727
|
# * {Types::GetReferenceImportJobResponse#status_message #status_message} => String
|
1728
|
+
# * {Types::GetReferenceImportJobResponse#creation_time #creation_time} => Time
|
1729
|
+
# * {Types::GetReferenceImportJobResponse#completion_time #completion_time} => Time
|
1730
|
+
# * {Types::GetReferenceImportJobResponse#sources #sources} => Array<Types::ImportReferenceSourceItem>
|
1553
1731
|
#
|
1554
1732
|
# @example Request syntax with placeholder values
|
1555
1733
|
#
|
@@ -1560,21 +1738,21 @@ module Aws::Omics
|
|
1560
1738
|
#
|
1561
1739
|
# @example Response structure
|
1562
1740
|
#
|
1563
|
-
# resp.completion_time #=> Time
|
1564
|
-
# resp.creation_time #=> Time
|
1565
1741
|
# resp.id #=> String
|
1566
1742
|
# resp.reference_store_id #=> String
|
1567
1743
|
# resp.role_arn #=> String
|
1744
|
+
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1745
|
+
# resp.status_message #=> String
|
1746
|
+
# resp.creation_time #=> Time
|
1747
|
+
# resp.completion_time #=> Time
|
1568
1748
|
# resp.sources #=> Array
|
1569
|
-
# resp.sources[0].description #=> String
|
1570
|
-
# resp.sources[0].name #=> String
|
1571
1749
|
# resp.sources[0].source_file #=> String
|
1572
1750
|
# resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
|
1573
1751
|
# resp.sources[0].status_message #=> String
|
1752
|
+
# resp.sources[0].name #=> String
|
1753
|
+
# resp.sources[0].description #=> String
|
1574
1754
|
# resp.sources[0].tags #=> Hash
|
1575
1755
|
# resp.sources[0].tags["TagKey"] #=> String
|
1576
|
-
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
1577
|
-
# resp.status_message #=> String
|
1578
1756
|
#
|
1579
1757
|
#
|
1580
1758
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1600,16 +1778,16 @@ module Aws::Omics
|
|
1600
1778
|
#
|
1601
1779
|
# @return [Types::GetReferenceMetadataResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1602
1780
|
#
|
1603
|
-
# * {Types::GetReferenceMetadataResponse#arn #arn} => String
|
1604
|
-
# * {Types::GetReferenceMetadataResponse#creation_time #creation_time} => Time
|
1605
|
-
# * {Types::GetReferenceMetadataResponse#description #description} => String
|
1606
|
-
# * {Types::GetReferenceMetadataResponse#files #files} => Types::ReferenceFiles
|
1607
1781
|
# * {Types::GetReferenceMetadataResponse#id #id} => String
|
1608
|
-
# * {Types::GetReferenceMetadataResponse#
|
1609
|
-
# * {Types::GetReferenceMetadataResponse#name #name} => String
|
1782
|
+
# * {Types::GetReferenceMetadataResponse#arn #arn} => String
|
1610
1783
|
# * {Types::GetReferenceMetadataResponse#reference_store_id #reference_store_id} => String
|
1784
|
+
# * {Types::GetReferenceMetadataResponse#md5 #md5} => String
|
1611
1785
|
# * {Types::GetReferenceMetadataResponse#status #status} => String
|
1786
|
+
# * {Types::GetReferenceMetadataResponse#name #name} => String
|
1787
|
+
# * {Types::GetReferenceMetadataResponse#description #description} => String
|
1788
|
+
# * {Types::GetReferenceMetadataResponse#creation_time #creation_time} => Time
|
1612
1789
|
# * {Types::GetReferenceMetadataResponse#update_time #update_time} => Time
|
1790
|
+
# * {Types::GetReferenceMetadataResponse#files #files} => Types::ReferenceFiles
|
1613
1791
|
#
|
1614
1792
|
# @example Request syntax with placeholder values
|
1615
1793
|
#
|
@@ -1620,21 +1798,21 @@ module Aws::Omics
|
|
1620
1798
|
#
|
1621
1799
|
# @example Response structure
|
1622
1800
|
#
|
1623
|
-
# resp.arn #=> String
|
1624
|
-
# resp.creation_time #=> Time
|
1625
|
-
# resp.description #=> String
|
1626
|
-
# resp.files.index.content_length #=> Integer
|
1627
|
-
# resp.files.index.part_size #=> Integer
|
1628
|
-
# resp.files.index.total_parts #=> Integer
|
1629
|
-
# resp.files.source.content_length #=> Integer
|
1630
|
-
# resp.files.source.part_size #=> Integer
|
1631
|
-
# resp.files.source.total_parts #=> Integer
|
1632
1801
|
# resp.id #=> String
|
1633
|
-
# resp.
|
1634
|
-
# resp.name #=> String
|
1802
|
+
# resp.arn #=> String
|
1635
1803
|
# resp.reference_store_id #=> String
|
1804
|
+
# resp.md5 #=> String
|
1636
1805
|
# resp.status #=> String, one of "ACTIVE", "DELETING", "DELETED"
|
1806
|
+
# resp.name #=> String
|
1807
|
+
# resp.description #=> String
|
1808
|
+
# resp.creation_time #=> Time
|
1637
1809
|
# resp.update_time #=> Time
|
1810
|
+
# resp.files.source.total_parts #=> Integer
|
1811
|
+
# resp.files.source.part_size #=> Integer
|
1812
|
+
# resp.files.source.content_length #=> Integer
|
1813
|
+
# resp.files.index.total_parts #=> Integer
|
1814
|
+
# resp.files.index.part_size #=> Integer
|
1815
|
+
# resp.files.index.content_length #=> Integer
|
1638
1816
|
#
|
1639
1817
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceMetadata AWS API Documentation
|
1640
1818
|
#
|
@@ -1652,12 +1830,12 @@ module Aws::Omics
|
|
1652
1830
|
#
|
1653
1831
|
# @return [Types::GetReferenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1654
1832
|
#
|
1655
|
-
# * {Types::GetReferenceStoreResponse#arn #arn} => String
|
1656
|
-
# * {Types::GetReferenceStoreResponse#creation_time #creation_time} => Time
|
1657
|
-
# * {Types::GetReferenceStoreResponse#description #description} => String
|
1658
1833
|
# * {Types::GetReferenceStoreResponse#id #id} => String
|
1834
|
+
# * {Types::GetReferenceStoreResponse#arn #arn} => String
|
1659
1835
|
# * {Types::GetReferenceStoreResponse#name #name} => String
|
1836
|
+
# * {Types::GetReferenceStoreResponse#description #description} => String
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# * {Types::GetReferenceStoreResponse#sse_config #sse_config} => Types::SseConfig
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# * {Types::GetReferenceStoreResponse#creation_time #creation_time} => Time
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#
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# @example Request syntax with placeholder values
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#
|
@@ -1667,13 +1845,13 @@ module Aws::Omics
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#
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# @example Response structure
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# resp.arn #=> String
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# resp.
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# resp.description #=> String
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# resp.sse_config.type #=> String, one of "KMS"
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# resp.sse_config.key_arn #=> String
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# resp.creation_time #=> Time
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceStore AWS API Documentation
|
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#
|
@@ -1686,71 +1864,73 @@ module Aws::Omics
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# Gets information about a workflow run.
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#
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# @option params [Array<String>] :export
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# The run's export format.
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#
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# The run's ID.
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# @option params [Array<String>] :export
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# The run's export format.
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#
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# @return [Types::GetRunResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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#
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# * {Types::GetRunResponse#creation_time #creation_time} => Time
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# * {Types::GetRunResponse#definition #definition} => String
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# * {Types::GetRunResponse#digest #digest} => String
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# * {Types::GetRunResponse#id #id} => String
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# * {Types::GetRunResponse#
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# * {Types::GetRunResponse#status #status} => String
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# * {Types::GetRunResponse#workflow_id #workflow_id} => String
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# * {Types::GetRunResponse#workflow_type #workflow_type} => String
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# * {Types::GetRunResponse#run_id #run_id} => String
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# * {Types::GetRunResponse#role_arn #role_arn} => String
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# * {Types::GetRunResponse#name #name} => String
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# * {Types::GetRunResponse#
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# * {Types::GetRunResponse#parameters #parameters} => Hash,Array,String,Numeric,Boolean
|
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# * {Types::GetRunResponse#run_group_id #run_group_id} => String
|
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# * {Types::GetRunResponse#priority #priority} => Integer
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# * {Types::GetRunResponse#definition #definition} => String
|
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# * {Types::GetRunResponse#digest #digest} => String
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# * {Types::GetRunResponse#parameters #parameters} => Hash,Array,String,Numeric,Boolean
|
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# * {Types::GetRunResponse#storage_capacity #storage_capacity} => Integer
|
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# * {Types::GetRunResponse#output_uri #output_uri} => String
|
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# * {Types::GetRunResponse#log_level #log_level} => String
|
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|
# * {Types::GetRunResponse#resource_digests #resource_digests} => Hash<String,String>
|
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|
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# * {Types::GetRunResponse#role_arn #role_arn} => String
|
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# * {Types::GetRunResponse#run_group_id #run_group_id} => String
|
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|
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# * {Types::GetRunResponse#run_id #run_id} => String
|
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|
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# * {Types::GetRunResponse#start_time #start_time} => Time
|
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# * {Types::GetRunResponse#started_by #started_by} => String
|
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|
-
# * {Types::GetRunResponse#
|
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|
-
# * {Types::GetRunResponse#
|
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|
+
# * {Types::GetRunResponse#creation_time #creation_time} => Time
|
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|
+
# * {Types::GetRunResponse#start_time #start_time} => Time
|
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|
# * {Types::GetRunResponse#stop_time #stop_time} => Time
|
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|
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# * {Types::GetRunResponse#
|
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|
+
# * {Types::GetRunResponse#status_message #status_message} => String
|
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|
# * {Types::GetRunResponse#tags #tags} => Hash<String,String>
|
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|
-
# * {Types::GetRunResponse#
|
1719
|
-
# * {Types::GetRunResponse#workflow_type #workflow_type} => String
|
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|
+
# * {Types::GetRunResponse#accelerators #accelerators} => String
|
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|
#
|
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|
# @example Request syntax with placeholder values
|
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|
#
|
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|
# resp = client.get_run({
|
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|
-
# export: ["DEFINITION"], # accepts DEFINITION
|
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|
# id: "RunId", # required
|
1904
|
+
# export: ["DEFINITION"], # accepts DEFINITION
|
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|
# })
|
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|
#
|
1728
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|
# @example Response structure
|
1729
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|
#
|
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|
# resp.arn #=> String
|
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|
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# resp.creation_time #=> Time
|
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# resp.definition #=> String
|
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|
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# resp.digest #=> String
|
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1910
|
# resp.id #=> String
|
1735
|
-
# resp.
|
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|
+
# resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
|
1912
|
+
# resp.workflow_id #=> String
|
1913
|
+
# resp.workflow_type #=> String, one of "PRIVATE", "READY2RUN"
|
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|
+
# resp.run_id #=> String
|
1915
|
+
# resp.role_arn #=> String
|
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# resp.name #=> String
|
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|
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# resp.
|
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# resp.run_group_id #=> String
|
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# resp.priority #=> Integer
|
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# resp.definition #=> String
|
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|
+
# resp.digest #=> String
|
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|
+
# resp.storage_capacity #=> Integer
|
1922
|
+
# resp.output_uri #=> String
|
1923
|
+
# resp.log_level #=> String, one of "OFF", "FATAL", "ERROR", "ALL"
|
1739
1924
|
# resp.resource_digests #=> Hash
|
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1925
|
# resp.resource_digests["RunResourceDigestKey"] #=> String
|
1741
|
-
# resp.role_arn #=> String
|
1742
|
-
# resp.run_group_id #=> String
|
1743
|
-
# resp.run_id #=> String
|
1744
|
-
# resp.start_time #=> Time
|
1745
1926
|
# resp.started_by #=> String
|
1746
|
-
# resp.
|
1747
|
-
# resp.
|
1927
|
+
# resp.creation_time #=> Time
|
1928
|
+
# resp.start_time #=> Time
|
1748
1929
|
# resp.stop_time #=> Time
|
1749
|
-
# resp.
|
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|
+
# resp.status_message #=> String
|
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|
# resp.tags #=> Hash
|
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|
# resp.tags["TagKey"] #=> String
|
1752
|
-
# resp.
|
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|
-
# resp.workflow_type #=> String, one of "PRIVATE"
|
1933
|
+
# resp.accelerators #=> String, one of "GPU"
|
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|
#
|
1755
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|
#
|
1756
1936
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1775,13 +1955,14 @@ module Aws::Omics
|
|
1775
1955
|
# @return [Types::GetRunGroupResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1776
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|
#
|
1777
1957
|
# * {Types::GetRunGroupResponse#arn #arn} => String
|
1778
|
-
# * {Types::GetRunGroupResponse#creation_time #creation_time} => Time
|
1779
1958
|
# * {Types::GetRunGroupResponse#id #id} => String
|
1959
|
+
# * {Types::GetRunGroupResponse#name #name} => String
|
1780
1960
|
# * {Types::GetRunGroupResponse#max_cpus #max_cpus} => Integer
|
1781
|
-
# * {Types::GetRunGroupResponse#max_duration #max_duration} => Integer
|
1782
1961
|
# * {Types::GetRunGroupResponse#max_runs #max_runs} => Integer
|
1783
|
-
# * {Types::GetRunGroupResponse#
|
1962
|
+
# * {Types::GetRunGroupResponse#max_duration #max_duration} => Integer
|
1963
|
+
# * {Types::GetRunGroupResponse#creation_time #creation_time} => Time
|
1784
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|
# * {Types::GetRunGroupResponse#tags #tags} => Hash<String,String>
|
1965
|
+
# * {Types::GetRunGroupResponse#max_gpus #max_gpus} => Integer
|
1785
1966
|
#
|
1786
1967
|
# @example Request syntax with placeholder values
|
1787
1968
|
#
|
@@ -1792,14 +1973,15 @@ module Aws::Omics
|
|
1792
1973
|
# @example Response structure
|
1793
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|
#
|
1794
1975
|
# resp.arn #=> String
|
1795
|
-
# resp.creation_time #=> Time
|
1796
1976
|
# resp.id #=> String
|
1977
|
+
# resp.name #=> String
|
1797
1978
|
# resp.max_cpus #=> Integer
|
1798
|
-
# resp.max_duration #=> Integer
|
1799
1979
|
# resp.max_runs #=> Integer
|
1800
|
-
# resp.
|
1980
|
+
# resp.max_duration #=> Integer
|
1981
|
+
# resp.creation_time #=> Time
|
1801
1982
|
# resp.tags #=> Hash
|
1802
1983
|
# resp.tags["TagKey"] #=> String
|
1984
|
+
# resp.max_gpus #=> Integer
|
1803
1985
|
#
|
1804
1986
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetRunGroup AWS API Documentation
|
1805
1987
|
#
|
@@ -1820,16 +2002,17 @@ module Aws::Omics
|
|
1820
2002
|
#
|
1821
2003
|
# @return [Types::GetRunTaskResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1822
2004
|
#
|
2005
|
+
# * {Types::GetRunTaskResponse#task_id #task_id} => String
|
2006
|
+
# * {Types::GetRunTaskResponse#status #status} => String
|
2007
|
+
# * {Types::GetRunTaskResponse#name #name} => String
|
1823
2008
|
# * {Types::GetRunTaskResponse#cpus #cpus} => Integer
|
1824
|
-
# * {Types::GetRunTaskResponse#creation_time #creation_time} => Time
|
1825
|
-
# * {Types::GetRunTaskResponse#log_stream #log_stream} => String
|
1826
2009
|
# * {Types::GetRunTaskResponse#memory #memory} => Integer
|
1827
|
-
# * {Types::GetRunTaskResponse#
|
2010
|
+
# * {Types::GetRunTaskResponse#creation_time #creation_time} => Time
|
1828
2011
|
# * {Types::GetRunTaskResponse#start_time #start_time} => Time
|
1829
|
-
# * {Types::GetRunTaskResponse#status #status} => String
|
1830
|
-
# * {Types::GetRunTaskResponse#status_message #status_message} => String
|
1831
2012
|
# * {Types::GetRunTaskResponse#stop_time #stop_time} => Time
|
1832
|
-
# * {Types::GetRunTaskResponse#
|
2013
|
+
# * {Types::GetRunTaskResponse#status_message #status_message} => String
|
2014
|
+
# * {Types::GetRunTaskResponse#log_stream #log_stream} => String
|
2015
|
+
# * {Types::GetRunTaskResponse#gpus #gpus} => Integer
|
1833
2016
|
#
|
1834
2017
|
# @example Request syntax with placeholder values
|
1835
2018
|
#
|
@@ -1840,16 +2023,17 @@ module Aws::Omics
|
|
1840
2023
|
#
|
1841
2024
|
# @example Response structure
|
1842
2025
|
#
|
2026
|
+
# resp.task_id #=> String
|
2027
|
+
# resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
|
2028
|
+
# resp.name #=> String
|
1843
2029
|
# resp.cpus #=> Integer
|
1844
|
-
# resp.creation_time #=> Time
|
1845
|
-
# resp.log_stream #=> String
|
1846
2030
|
# resp.memory #=> Integer
|
1847
|
-
# resp.
|
2031
|
+
# resp.creation_time #=> Time
|
1848
2032
|
# resp.start_time #=> Time
|
1849
|
-
# resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
|
1850
|
-
# resp.status_message #=> String
|
1851
2033
|
# resp.stop_time #=> Time
|
1852
|
-
# resp.
|
2034
|
+
# resp.status_message #=> String
|
2035
|
+
# resp.log_stream #=> String
|
2036
|
+
# resp.gpus #=> Integer
|
1853
2037
|
#
|
1854
2038
|
#
|
1855
2039
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1873,12 +2057,13 @@ module Aws::Omics
|
|
1873
2057
|
#
|
1874
2058
|
# @return [Types::GetSequenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1875
2059
|
#
|
1876
|
-
# * {Types::GetSequenceStoreResponse#arn #arn} => String
|
1877
|
-
# * {Types::GetSequenceStoreResponse#creation_time #creation_time} => Time
|
1878
|
-
# * {Types::GetSequenceStoreResponse#description #description} => String
|
1879
2060
|
# * {Types::GetSequenceStoreResponse#id #id} => String
|
2061
|
+
# * {Types::GetSequenceStoreResponse#arn #arn} => String
|
1880
2062
|
# * {Types::GetSequenceStoreResponse#name #name} => String
|
2063
|
+
# * {Types::GetSequenceStoreResponse#description #description} => String
|
1881
2064
|
# * {Types::GetSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig
|
2065
|
+
# * {Types::GetSequenceStoreResponse#creation_time #creation_time} => Time
|
2066
|
+
# * {Types::GetSequenceStoreResponse#fallback_location #fallback_location} => String
|
1882
2067
|
#
|
1883
2068
|
# @example Request syntax with placeholder values
|
1884
2069
|
#
|
@@ -1888,13 +2073,14 @@ module Aws::Omics
|
|
1888
2073
|
#
|
1889
2074
|
# @example Response structure
|
1890
2075
|
#
|
1891
|
-
# resp.arn #=> String
|
1892
|
-
# resp.creation_time #=> Time
|
1893
|
-
# resp.description #=> String
|
1894
2076
|
# resp.id #=> String
|
2077
|
+
# resp.arn #=> String
|
1895
2078
|
# resp.name #=> String
|
1896
|
-
# resp.
|
2079
|
+
# resp.description #=> String
|
1897
2080
|
# resp.sse_config.type #=> String, one of "KMS"
|
2081
|
+
# resp.sse_config.key_arn #=> String
|
2082
|
+
# resp.creation_time #=> Time
|
2083
|
+
# resp.fallback_location #=> String
|
1898
2084
|
#
|
1899
2085
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetSequenceStore AWS API Documentation
|
1900
2086
|
#
|
@@ -1912,16 +2098,17 @@ module Aws::Omics
|
|
1912
2098
|
#
|
1913
2099
|
# @return [Types::GetVariantImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1914
2100
|
#
|
1915
|
-
# * {Types::GetVariantImportResponse#completion_time #completion_time} => Time
|
1916
|
-
# * {Types::GetVariantImportResponse#creation_time #creation_time} => Time
|
1917
|
-
# * {Types::GetVariantImportResponse#destination_name #destination_name} => String
|
1918
2101
|
# * {Types::GetVariantImportResponse#id #id} => String
|
1919
|
-
# * {Types::GetVariantImportResponse#
|
2102
|
+
# * {Types::GetVariantImportResponse#destination_name #destination_name} => String
|
1920
2103
|
# * {Types::GetVariantImportResponse#role_arn #role_arn} => String
|
1921
|
-
# * {Types::GetVariantImportResponse#run_left_normalization #run_left_normalization} => Boolean
|
1922
2104
|
# * {Types::GetVariantImportResponse#status #status} => String
|
1923
2105
|
# * {Types::GetVariantImportResponse#status_message #status_message} => String
|
2106
|
+
# * {Types::GetVariantImportResponse#creation_time #creation_time} => Time
|
1924
2107
|
# * {Types::GetVariantImportResponse#update_time #update_time} => Time
|
2108
|
+
# * {Types::GetVariantImportResponse#completion_time #completion_time} => Time
|
2109
|
+
# * {Types::GetVariantImportResponse#items #items} => Array<Types::VariantImportItemDetail>
|
2110
|
+
# * {Types::GetVariantImportResponse#run_left_normalization #run_left_normalization} => Boolean
|
2111
|
+
# * {Types::GetVariantImportResponse#annotation_fields #annotation_fields} => Hash<String,String>
|
1925
2112
|
#
|
1926
2113
|
# @example Request syntax with placeholder values
|
1927
2114
|
#
|
@@ -1931,19 +2118,21 @@ module Aws::Omics
|
|
1931
2118
|
#
|
1932
2119
|
# @example Response structure
|
1933
2120
|
#
|
1934
|
-
# resp.completion_time #=> Time
|
1935
|
-
# resp.creation_time #=> Time
|
1936
|
-
# resp.destination_name #=> String
|
1937
2121
|
# resp.id #=> String
|
1938
|
-
# resp.
|
1939
|
-
# resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
1940
|
-
# resp.items[0].source #=> String
|
1941
|
-
# resp.items[0].status_message #=> String
|
2122
|
+
# resp.destination_name #=> String
|
1942
2123
|
# resp.role_arn #=> String
|
1943
|
-
# resp.run_left_normalization #=> Boolean
|
1944
2124
|
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
1945
2125
|
# resp.status_message #=> String
|
2126
|
+
# resp.creation_time #=> Time
|
1946
2127
|
# resp.update_time #=> Time
|
2128
|
+
# resp.completion_time #=> Time
|
2129
|
+
# resp.items #=> Array
|
2130
|
+
# resp.items[0].source #=> String
|
2131
|
+
# resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
2132
|
+
# resp.items[0].status_message #=> String
|
2133
|
+
# resp.run_left_normalization #=> Boolean
|
2134
|
+
# resp.annotation_fields #=> Hash
|
2135
|
+
# resp.annotation_fields["AnnotationFieldMapKeyString"] #=> String
|
1947
2136
|
#
|
1948
2137
|
#
|
1949
2138
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1966,18 +2155,18 @@ module Aws::Omics
|
|
1966
2155
|
#
|
1967
2156
|
# @return [Types::GetVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1968
2157
|
#
|
1969
|
-
# * {Types::GetVariantStoreResponse#creation_time #creation_time} => Time
|
1970
|
-
# * {Types::GetVariantStoreResponse#description #description} => String
|
1971
2158
|
# * {Types::GetVariantStoreResponse#id #id} => String
|
1972
|
-
# * {Types::GetVariantStoreResponse#name #name} => String
|
1973
2159
|
# * {Types::GetVariantStoreResponse#reference #reference} => Types::ReferenceItem
|
1974
|
-
# * {Types::GetVariantStoreResponse#sse_config #sse_config} => Types::SseConfig
|
1975
2160
|
# * {Types::GetVariantStoreResponse#status #status} => String
|
1976
|
-
# * {Types::GetVariantStoreResponse#status_message #status_message} => String
|
1977
2161
|
# * {Types::GetVariantStoreResponse#store_arn #store_arn} => String
|
1978
|
-
# * {Types::GetVariantStoreResponse#
|
1979
|
-
# * {Types::GetVariantStoreResponse#
|
2162
|
+
# * {Types::GetVariantStoreResponse#name #name} => String
|
2163
|
+
# * {Types::GetVariantStoreResponse#description #description} => String
|
2164
|
+
# * {Types::GetVariantStoreResponse#sse_config #sse_config} => Types::SseConfig
|
2165
|
+
# * {Types::GetVariantStoreResponse#creation_time #creation_time} => Time
|
1980
2166
|
# * {Types::GetVariantStoreResponse#update_time #update_time} => Time
|
2167
|
+
# * {Types::GetVariantStoreResponse#tags #tags} => Hash<String,String>
|
2168
|
+
# * {Types::GetVariantStoreResponse#status_message #status_message} => String
|
2169
|
+
# * {Types::GetVariantStoreResponse#store_size_bytes #store_size_bytes} => Integer
|
1981
2170
|
#
|
1982
2171
|
# @example Request syntax with placeholder values
|
1983
2172
|
#
|
@@ -1987,20 +2176,20 @@ module Aws::Omics
|
|
1987
2176
|
#
|
1988
2177
|
# @example Response structure
|
1989
2178
|
#
|
1990
|
-
# resp.creation_time #=> Time
|
1991
|
-
# resp.description #=> String
|
1992
2179
|
# resp.id #=> String
|
1993
|
-
# resp.name #=> String
|
1994
2180
|
# resp.reference.reference_arn #=> String
|
1995
|
-
# resp.sse_config.key_arn #=> String
|
1996
|
-
# resp.sse_config.type #=> String, one of "KMS"
|
1997
2181
|
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
1998
|
-
# resp.status_message #=> String
|
1999
2182
|
# resp.store_arn #=> String
|
2000
|
-
# resp.
|
2183
|
+
# resp.name #=> String
|
2184
|
+
# resp.description #=> String
|
2185
|
+
# resp.sse_config.type #=> String, one of "KMS"
|
2186
|
+
# resp.sse_config.key_arn #=> String
|
2187
|
+
# resp.creation_time #=> Time
|
2188
|
+
# resp.update_time #=> Time
|
2001
2189
|
# resp.tags #=> Hash
|
2002
2190
|
# resp.tags["TagKey"] #=> String
|
2003
|
-
# resp.
|
2191
|
+
# resp.status_message #=> String
|
2192
|
+
# resp.store_size_bytes #=> Integer
|
2004
2193
|
#
|
2005
2194
|
#
|
2006
2195
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -2019,61 +2208,66 @@ module Aws::Omics
|
|
2019
2208
|
|
2020
2209
|
# Gets information about a workflow.
|
2021
2210
|
#
|
2022
|
-
# @option params [Array<String>] :export
|
2023
|
-
# The export format for the workflow.
|
2024
|
-
#
|
2025
2211
|
# @option params [required, String] :id
|
2026
2212
|
# The workflow's ID.
|
2027
2213
|
#
|
2028
2214
|
# @option params [String] :type
|
2029
2215
|
# The workflow's type.
|
2030
2216
|
#
|
2217
|
+
# @option params [Array<String>] :export
|
2218
|
+
# The export format for the workflow.
|
2219
|
+
#
|
2031
2220
|
# @return [Types::GetWorkflowResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2032
2221
|
#
|
2033
2222
|
# * {Types::GetWorkflowResponse#arn #arn} => String
|
2034
|
-
# * {Types::GetWorkflowResponse#
|
2035
|
-
# * {Types::GetWorkflowResponse#
|
2223
|
+
# * {Types::GetWorkflowResponse#id #id} => String
|
2224
|
+
# * {Types::GetWorkflowResponse#status #status} => String
|
2225
|
+
# * {Types::GetWorkflowResponse#type #type} => String
|
2226
|
+
# * {Types::GetWorkflowResponse#name #name} => String
|
2036
2227
|
# * {Types::GetWorkflowResponse#description #description} => String
|
2037
|
-
# * {Types::GetWorkflowResponse#digest #digest} => String
|
2038
2228
|
# * {Types::GetWorkflowResponse#engine #engine} => String
|
2039
|
-
# * {Types::GetWorkflowResponse#
|
2229
|
+
# * {Types::GetWorkflowResponse#definition #definition} => String
|
2040
2230
|
# * {Types::GetWorkflowResponse#main #main} => String
|
2041
|
-
# * {Types::GetWorkflowResponse#
|
2231
|
+
# * {Types::GetWorkflowResponse#digest #digest} => String
|
2042
2232
|
# * {Types::GetWorkflowResponse#parameter_template #parameter_template} => Hash<String,Types::WorkflowParameter>
|
2043
|
-
# * {Types::GetWorkflowResponse#status #status} => String
|
2044
|
-
# * {Types::GetWorkflowResponse#status_message #status_message} => String
|
2045
2233
|
# * {Types::GetWorkflowResponse#storage_capacity #storage_capacity} => Integer
|
2234
|
+
# * {Types::GetWorkflowResponse#creation_time #creation_time} => Time
|
2235
|
+
# * {Types::GetWorkflowResponse#status_message #status_message} => String
|
2046
2236
|
# * {Types::GetWorkflowResponse#tags #tags} => Hash<String,String>
|
2047
|
-
# * {Types::GetWorkflowResponse#
|
2237
|
+
# * {Types::GetWorkflowResponse#metadata #metadata} => Hash<String,String>
|
2238
|
+
# * {Types::GetWorkflowResponse#accelerators #accelerators} => String
|
2048
2239
|
#
|
2049
2240
|
# @example Request syntax with placeholder values
|
2050
2241
|
#
|
2051
2242
|
# resp = client.get_workflow({
|
2052
|
-
# export: ["DEFINITION"], # accepts DEFINITION
|
2053
2243
|
# id: "WorkflowId", # required
|
2054
|
-
# type: "PRIVATE", # accepts PRIVATE
|
2244
|
+
# type: "PRIVATE", # accepts PRIVATE, READY2RUN
|
2245
|
+
# export: ["DEFINITION"], # accepts DEFINITION
|
2055
2246
|
# })
|
2056
2247
|
#
|
2057
2248
|
# @example Response structure
|
2058
2249
|
#
|
2059
2250
|
# resp.arn #=> String
|
2060
|
-
# resp.
|
2061
|
-
# resp.
|
2251
|
+
# resp.id #=> String
|
2252
|
+
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
|
2253
|
+
# resp.type #=> String, one of "PRIVATE", "READY2RUN"
|
2254
|
+
# resp.name #=> String
|
2062
2255
|
# resp.description #=> String
|
2063
|
-
# resp.digest #=> String
|
2064
2256
|
# resp.engine #=> String, one of "WDL", "NEXTFLOW"
|
2065
|
-
# resp.
|
2257
|
+
# resp.definition #=> String
|
2066
2258
|
# resp.main #=> String
|
2067
|
-
# resp.
|
2259
|
+
# resp.digest #=> String
|
2068
2260
|
# resp.parameter_template #=> Hash
|
2069
2261
|
# resp.parameter_template["WorkflowParameterName"].description #=> String
|
2070
2262
|
# resp.parameter_template["WorkflowParameterName"].optional #=> Boolean
|
2071
|
-
# resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
|
2072
|
-
# resp.status_message #=> String
|
2073
2263
|
# resp.storage_capacity #=> Integer
|
2264
|
+
# resp.creation_time #=> Time
|
2265
|
+
# resp.status_message #=> String
|
2074
2266
|
# resp.tags #=> Hash
|
2075
2267
|
# resp.tags["TagKey"] #=> String
|
2076
|
-
# resp.
|
2268
|
+
# resp.metadata #=> Hash
|
2269
|
+
# resp.metadata["WorkflowMetadataKey"] #=> String
|
2270
|
+
# resp.accelerators #=> String, one of "GPU"
|
2077
2271
|
#
|
2078
2272
|
#
|
2079
2273
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -2091,19 +2285,19 @@ module Aws::Omics
|
|
2091
2285
|
|
2092
2286
|
# Retrieves a list of annotation import jobs.
|
2093
2287
|
#
|
2094
|
-
# @option params [
|
2095
|
-
#
|
2288
|
+
# @option params [Integer] :max_results
|
2289
|
+
# The maximum number of jobs to return in one page of results.
|
2096
2290
|
#
|
2097
2291
|
# @option params [Array<String>] :ids
|
2098
2292
|
# IDs of annotation import jobs to retrieve.
|
2099
2293
|
#
|
2100
|
-
# @option params [Integer] :max_results
|
2101
|
-
# The maximum number of jobs to return in one page of results.
|
2102
|
-
#
|
2103
2294
|
# @option params [String] :next_token
|
2104
2295
|
# Specify the pagination token from a previous request to retrieve the
|
2105
2296
|
# next page of results.
|
2106
2297
|
#
|
2298
|
+
# @option params [Types::ListAnnotationImportJobsFilter] :filter
|
2299
|
+
# A filter to apply to the list.
|
2300
|
+
#
|
2107
2301
|
# @return [Types::ListAnnotationImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2108
2302
|
#
|
2109
2303
|
# * {Types::ListAnnotationImportJobsResponse#annotation_import_jobs #annotation_import_jobs} => Array<Types::AnnotationImportJobItem>
|
@@ -2114,26 +2308,28 @@ module Aws::Omics
|
|
2114
2308
|
# @example Request syntax with placeholder values
|
2115
2309
|
#
|
2116
2310
|
# resp = client.list_annotation_import_jobs({
|
2311
|
+
# max_results: 1,
|
2312
|
+
# ids: ["ResourceIdentifier"],
|
2313
|
+
# next_token: "ListAnnotationImportJobsRequestNextTokenString",
|
2117
2314
|
# filter: {
|
2118
2315
|
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED, COMPLETED_WITH_FAILURES
|
2119
2316
|
# store_name: "String",
|
2120
2317
|
# },
|
2121
|
-
# ids: ["ResourceIdentifier"],
|
2122
|
-
# max_results: 1,
|
2123
|
-
# next_token: "ListAnnotationImportJobsRequestNextTokenString",
|
2124
2318
|
# })
|
2125
2319
|
#
|
2126
2320
|
# @example Response structure
|
2127
2321
|
#
|
2128
2322
|
# resp.annotation_import_jobs #=> Array
|
2129
|
-
# resp.annotation_import_jobs[0].completion_time #=> Time
|
2130
|
-
# resp.annotation_import_jobs[0].creation_time #=> Time
|
2131
|
-
# resp.annotation_import_jobs[0].destination_name #=> String
|
2132
2323
|
# resp.annotation_import_jobs[0].id #=> String
|
2324
|
+
# resp.annotation_import_jobs[0].destination_name #=> String
|
2133
2325
|
# resp.annotation_import_jobs[0].role_arn #=> String
|
2134
|
-
# resp.annotation_import_jobs[0].run_left_normalization #=> Boolean
|
2135
2326
|
# resp.annotation_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
2327
|
+
# resp.annotation_import_jobs[0].creation_time #=> Time
|
2136
2328
|
# resp.annotation_import_jobs[0].update_time #=> Time
|
2329
|
+
# resp.annotation_import_jobs[0].completion_time #=> Time
|
2330
|
+
# resp.annotation_import_jobs[0].run_left_normalization #=> Boolean
|
2331
|
+
# resp.annotation_import_jobs[0].annotation_fields #=> Hash
|
2332
|
+
# resp.annotation_import_jobs[0].annotation_fields["AnnotationFieldMapKeyString"] #=> String
|
2137
2333
|
# resp.next_token #=> String
|
2138
2334
|
#
|
2139
2335
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationImportJobs AWS API Documentation
|
@@ -2147,9 +2343,6 @@ module Aws::Omics
|
|
2147
2343
|
|
2148
2344
|
# Retrieves a list of annotation stores.
|
2149
2345
|
#
|
2150
|
-
# @option params [Types::ListAnnotationStoresFilter] :filter
|
2151
|
-
# A filter to apply to the list.
|
2152
|
-
#
|
2153
2346
|
# @option params [Array<String>] :ids
|
2154
2347
|
# IDs of stores to list.
|
2155
2348
|
#
|
@@ -2160,6 +2353,9 @@ module Aws::Omics
|
|
2160
2353
|
# Specify the pagination token from a previous request to retrieve the
|
2161
2354
|
# next page of results.
|
2162
2355
|
#
|
2356
|
+
# @option params [Types::ListAnnotationStoresFilter] :filter
|
2357
|
+
# A filter to apply to the list.
|
2358
|
+
#
|
2163
2359
|
# @return [Types::ListAnnotationStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2164
2360
|
#
|
2165
2361
|
# * {Types::ListAnnotationStoresResponse#annotation_stores #annotation_stores} => Array<Types::AnnotationStoreItem>
|
@@ -2170,30 +2366,30 @@ module Aws::Omics
|
|
2170
2366
|
# @example Request syntax with placeholder values
|
2171
2367
|
#
|
2172
2368
|
# resp = client.list_annotation_stores({
|
2173
|
-
# filter: {
|
2174
|
-
# status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
|
2175
|
-
# },
|
2176
2369
|
# ids: ["ResourceIdentifier"],
|
2177
2370
|
# max_results: 1,
|
2178
2371
|
# next_token: "ListAnnotationStoresRequestNextTokenString",
|
2372
|
+
# filter: {
|
2373
|
+
# status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
|
2374
|
+
# },
|
2179
2375
|
# })
|
2180
2376
|
#
|
2181
2377
|
# @example Response structure
|
2182
2378
|
#
|
2183
2379
|
# resp.annotation_stores #=> Array
|
2184
|
-
# resp.annotation_stores[0].creation_time #=> Time
|
2185
|
-
# resp.annotation_stores[0].description #=> String
|
2186
2380
|
# resp.annotation_stores[0].id #=> String
|
2187
|
-
# resp.annotation_stores[0].name #=> String
|
2188
2381
|
# resp.annotation_stores[0].reference.reference_arn #=> String
|
2189
|
-
# resp.annotation_stores[0].sse_config.key_arn #=> String
|
2190
|
-
# resp.annotation_stores[0].sse_config.type #=> String, one of "KMS"
|
2191
2382
|
# resp.annotation_stores[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
2192
|
-
# resp.annotation_stores[0].status_message #=> String
|
2193
2383
|
# resp.annotation_stores[0].store_arn #=> String
|
2384
|
+
# resp.annotation_stores[0].name #=> String
|
2194
2385
|
# resp.annotation_stores[0].store_format #=> String, one of "GFF", "TSV", "VCF"
|
2195
|
-
# resp.annotation_stores[0].
|
2386
|
+
# resp.annotation_stores[0].description #=> String
|
2387
|
+
# resp.annotation_stores[0].sse_config.type #=> String, one of "KMS"
|
2388
|
+
# resp.annotation_stores[0].sse_config.key_arn #=> String
|
2389
|
+
# resp.annotation_stores[0].creation_time #=> Time
|
2196
2390
|
# resp.annotation_stores[0].update_time #=> Time
|
2391
|
+
# resp.annotation_stores[0].status_message #=> String
|
2392
|
+
# resp.annotation_stores[0].store_size_bytes #=> Integer
|
2197
2393
|
# resp.next_token #=> String
|
2198
2394
|
#
|
2199
2395
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationStores AWS API Documentation
|
@@ -2205,10 +2401,64 @@ module Aws::Omics
|
|
2205
2401
|
req.send_request(options)
|
2206
2402
|
end
|
2207
2403
|
|
2404
|
+
# Lists all multipart read set uploads and their statuses.
|
2405
|
+
#
|
2406
|
+
# @option params [required, String] :sequence_store_id
|
2407
|
+
# The Sequence Store ID used for the multipart uploads.
|
2408
|
+
#
|
2409
|
+
# @option params [Integer] :max_results
|
2410
|
+
# The maximum number of multipart uploads returned in a page.
|
2411
|
+
#
|
2412
|
+
# @option params [String] :next_token
|
2413
|
+
# Next token returned in the response of a previous
|
2414
|
+
# ListMultipartReadSetUploads call. Used to get the next page of
|
2415
|
+
# results.
|
2416
|
+
#
|
2417
|
+
# @return [Types::ListMultipartReadSetUploadsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2418
|
+
#
|
2419
|
+
# * {Types::ListMultipartReadSetUploadsResponse#next_token #next_token} => String
|
2420
|
+
# * {Types::ListMultipartReadSetUploadsResponse#uploads #uploads} => Array<Types::MultipartReadSetUploadListItem>
|
2421
|
+
#
|
2422
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2423
|
+
#
|
2424
|
+
# @example Request syntax with placeholder values
|
2425
|
+
#
|
2426
|
+
# resp = client.list_multipart_read_set_uploads({
|
2427
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2428
|
+
# max_results: 1,
|
2429
|
+
# next_token: "NextToken",
|
2430
|
+
# })
|
2431
|
+
#
|
2432
|
+
# @example Response structure
|
2433
|
+
#
|
2434
|
+
# resp.next_token #=> String
|
2435
|
+
# resp.uploads #=> Array
|
2436
|
+
# resp.uploads[0].sequence_store_id #=> String
|
2437
|
+
# resp.uploads[0].upload_id #=> String
|
2438
|
+
# resp.uploads[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
2439
|
+
# resp.uploads[0].subject_id #=> String
|
2440
|
+
# resp.uploads[0].sample_id #=> String
|
2441
|
+
# resp.uploads[0].generated_from #=> String
|
2442
|
+
# resp.uploads[0].reference_arn #=> String
|
2443
|
+
# resp.uploads[0].name #=> String
|
2444
|
+
# resp.uploads[0].description #=> String
|
2445
|
+
# resp.uploads[0].tags #=> Hash
|
2446
|
+
# resp.uploads[0].tags["TagKey"] #=> String
|
2447
|
+
# resp.uploads[0].creation_time #=> Time
|
2448
|
+
#
|
2449
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListMultipartReadSetUploads AWS API Documentation
|
2450
|
+
#
|
2451
|
+
# @overload list_multipart_read_set_uploads(params = {})
|
2452
|
+
# @param [Hash] params ({})
|
2453
|
+
def list_multipart_read_set_uploads(params = {}, options = {})
|
2454
|
+
req = build_request(:list_multipart_read_set_uploads, params)
|
2455
|
+
req.send_request(options)
|
2456
|
+
end
|
2457
|
+
|
2208
2458
|
# Retrieves a list of read set activation jobs.
|
2209
2459
|
#
|
2210
|
-
# @option params [
|
2211
|
-
#
|
2460
|
+
# @option params [required, String] :sequence_store_id
|
2461
|
+
# The read set's sequence store ID.
|
2212
2462
|
#
|
2213
2463
|
# @option params [Integer] :max_results
|
2214
2464
|
# The maximum number of read set activation jobs to return in one page
|
@@ -2218,38 +2468,38 @@ module Aws::Omics
|
|
2218
2468
|
# Specify the pagination token from a previous request to retrieve the
|
2219
2469
|
# next page of results.
|
2220
2470
|
#
|
2221
|
-
# @option params [
|
2222
|
-
#
|
2471
|
+
# @option params [Types::ActivateReadSetFilter] :filter
|
2472
|
+
# A filter to apply to the list.
|
2223
2473
|
#
|
2224
2474
|
# @return [Types::ListReadSetActivationJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2225
2475
|
#
|
2226
|
-
# * {Types::ListReadSetActivationJobsResponse#activation_jobs #activation_jobs} => Array<Types::ActivateReadSetJobItem>
|
2227
2476
|
# * {Types::ListReadSetActivationJobsResponse#next_token #next_token} => String
|
2477
|
+
# * {Types::ListReadSetActivationJobsResponse#activation_jobs #activation_jobs} => Array<Types::ActivateReadSetJobItem>
|
2228
2478
|
#
|
2229
2479
|
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2230
2480
|
#
|
2231
2481
|
# @example Request syntax with placeholder values
|
2232
2482
|
#
|
2233
2483
|
# resp = client.list_read_set_activation_jobs({
|
2484
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2485
|
+
# max_results: 1,
|
2486
|
+
# next_token: "NextToken",
|
2234
2487
|
# filter: {
|
2488
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2235
2489
|
# created_after: Time.now,
|
2236
2490
|
# created_before: Time.now,
|
2237
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2238
2491
|
# },
|
2239
|
-
# max_results: 1,
|
2240
|
-
# next_token: "NextToken",
|
2241
|
-
# sequence_store_id: "SequenceStoreId", # required
|
2242
2492
|
# })
|
2243
2493
|
#
|
2244
2494
|
# @example Response structure
|
2245
2495
|
#
|
2496
|
+
# resp.next_token #=> String
|
2246
2497
|
# resp.activation_jobs #=> Array
|
2247
|
-
# resp.activation_jobs[0].completion_time #=> Time
|
2248
|
-
# resp.activation_jobs[0].creation_time #=> Time
|
2249
2498
|
# resp.activation_jobs[0].id #=> String
|
2250
2499
|
# resp.activation_jobs[0].sequence_store_id #=> String
|
2251
2500
|
# resp.activation_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
2252
|
-
# resp.
|
2501
|
+
# resp.activation_jobs[0].creation_time #=> Time
|
2502
|
+
# resp.activation_jobs[0].completion_time #=> Time
|
2253
2503
|
#
|
2254
2504
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetActivationJobs AWS API Documentation
|
2255
2505
|
#
|
@@ -2262,8 +2512,8 @@ module Aws::Omics
|
|
2262
2512
|
|
2263
2513
|
# Retrieves a list of read set export jobs.
|
2264
2514
|
#
|
2265
|
-
# @option params [
|
2266
|
-
#
|
2515
|
+
# @option params [required, String] :sequence_store_id
|
2516
|
+
# The jobs' sequence store ID.
|
2267
2517
|
#
|
2268
2518
|
# @option params [Integer] :max_results
|
2269
2519
|
# The maximum number of jobs to return in one page of results.
|
@@ -2272,39 +2522,39 @@ module Aws::Omics
|
|
2272
2522
|
# Specify the pagination token from a previous request to retrieve the
|
2273
2523
|
# next page of results.
|
2274
2524
|
#
|
2275
|
-
# @option params [
|
2276
|
-
#
|
2525
|
+
# @option params [Types::ExportReadSetFilter] :filter
|
2526
|
+
# A filter to apply to the list.
|
2277
2527
|
#
|
2278
2528
|
# @return [Types::ListReadSetExportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2279
2529
|
#
|
2280
|
-
# * {Types::ListReadSetExportJobsResponse#export_jobs #export_jobs} => Array<Types::ExportReadSetJobDetail>
|
2281
2530
|
# * {Types::ListReadSetExportJobsResponse#next_token #next_token} => String
|
2531
|
+
# * {Types::ListReadSetExportJobsResponse#export_jobs #export_jobs} => Array<Types::ExportReadSetJobDetail>
|
2282
2532
|
#
|
2283
2533
|
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2284
2534
|
#
|
2285
2535
|
# @example Request syntax with placeholder values
|
2286
2536
|
#
|
2287
2537
|
# resp = client.list_read_set_export_jobs({
|
2538
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2539
|
+
# max_results: 1,
|
2540
|
+
# next_token: "NextToken",
|
2288
2541
|
# filter: {
|
2542
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2289
2543
|
# created_after: Time.now,
|
2290
2544
|
# created_before: Time.now,
|
2291
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2292
2545
|
# },
|
2293
|
-
# max_results: 1,
|
2294
|
-
# next_token: "NextToken",
|
2295
|
-
# sequence_store_id: "SequenceStoreId", # required
|
2296
2546
|
# })
|
2297
2547
|
#
|
2298
2548
|
# @example Response structure
|
2299
2549
|
#
|
2550
|
+
# resp.next_token #=> String
|
2300
2551
|
# resp.export_jobs #=> Array
|
2301
|
-
# resp.export_jobs[0].completion_time #=> Time
|
2302
|
-
# resp.export_jobs[0].creation_time #=> Time
|
2303
|
-
# resp.export_jobs[0].destination #=> String
|
2304
2552
|
# resp.export_jobs[0].id #=> String
|
2305
2553
|
# resp.export_jobs[0].sequence_store_id #=> String
|
2554
|
+
# resp.export_jobs[0].destination #=> String
|
2306
2555
|
# resp.export_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
2307
|
-
# resp.
|
2556
|
+
# resp.export_jobs[0].creation_time #=> Time
|
2557
|
+
# resp.export_jobs[0].completion_time #=> Time
|
2308
2558
|
#
|
2309
2559
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetExportJobs AWS API Documentation
|
2310
2560
|
#
|
@@ -2317,9 +2567,6 @@ module Aws::Omics
|
|
2317
2567
|
|
2318
2568
|
# Retrieves a list of read set import jobs.
|
2319
2569
|
#
|
2320
|
-
# @option params [Types::ImportReadSetFilter] :filter
|
2321
|
-
# A filter to apply to the list.
|
2322
|
-
#
|
2323
2570
|
# @option params [Integer] :max_results
|
2324
2571
|
# The maximum number of jobs to return in one page of results.
|
2325
2572
|
#
|
@@ -2330,36 +2577,39 @@ module Aws::Omics
|
|
2330
2577
|
# @option params [required, String] :sequence_store_id
|
2331
2578
|
# The jobs' sequence store ID.
|
2332
2579
|
#
|
2580
|
+
# @option params [Types::ImportReadSetFilter] :filter
|
2581
|
+
# A filter to apply to the list.
|
2582
|
+
#
|
2333
2583
|
# @return [Types::ListReadSetImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2334
2584
|
#
|
2335
|
-
# * {Types::ListReadSetImportJobsResponse#import_jobs #import_jobs} => Array<Types::ImportReadSetJobItem>
|
2336
2585
|
# * {Types::ListReadSetImportJobsResponse#next_token #next_token} => String
|
2586
|
+
# * {Types::ListReadSetImportJobsResponse#import_jobs #import_jobs} => Array<Types::ImportReadSetJobItem>
|
2337
2587
|
#
|
2338
2588
|
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2339
2589
|
#
|
2340
2590
|
# @example Request syntax with placeholder values
|
2341
2591
|
#
|
2342
2592
|
# resp = client.list_read_set_import_jobs({
|
2593
|
+
# max_results: 1,
|
2594
|
+
# next_token: "NextToken",
|
2595
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2343
2596
|
# filter: {
|
2597
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2344
2598
|
# created_after: Time.now,
|
2345
2599
|
# created_before: Time.now,
|
2346
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2347
2600
|
# },
|
2348
|
-
# max_results: 1,
|
2349
|
-
# next_token: "NextToken",
|
2350
|
-
# sequence_store_id: "SequenceStoreId", # required
|
2351
2601
|
# })
|
2352
2602
|
#
|
2353
2603
|
# @example Response structure
|
2354
2604
|
#
|
2605
|
+
# resp.next_token #=> String
|
2355
2606
|
# resp.import_jobs #=> Array
|
2356
|
-
# resp.import_jobs[0].completion_time #=> Time
|
2357
|
-
# resp.import_jobs[0].creation_time #=> Time
|
2358
2607
|
# resp.import_jobs[0].id #=> String
|
2359
|
-
# resp.import_jobs[0].role_arn #=> String
|
2360
2608
|
# resp.import_jobs[0].sequence_store_id #=> String
|
2609
|
+
# resp.import_jobs[0].role_arn #=> String
|
2361
2610
|
# resp.import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
2362
|
-
# resp.
|
2611
|
+
# resp.import_jobs[0].creation_time #=> Time
|
2612
|
+
# resp.import_jobs[0].completion_time #=> Time
|
2363
2613
|
#
|
2364
2614
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetImportJobs AWS API Documentation
|
2365
2615
|
#
|
@@ -2370,10 +2620,75 @@ module Aws::Omics
|
|
2370
2620
|
req.send_request(options)
|
2371
2621
|
end
|
2372
2622
|
|
2623
|
+
# This operation will list all parts in a requested multipart upload for
|
2624
|
+
# a sequence store.
|
2625
|
+
#
|
2626
|
+
# @option params [required, String] :sequence_store_id
|
2627
|
+
# The Sequence Store ID used for the multipart uploads.
|
2628
|
+
#
|
2629
|
+
# @option params [required, String] :upload_id
|
2630
|
+
# The ID for the initiated multipart upload.
|
2631
|
+
#
|
2632
|
+
# @option params [required, String] :part_source
|
2633
|
+
# The source file for the upload part.
|
2634
|
+
#
|
2635
|
+
# @option params [Integer] :max_results
|
2636
|
+
# The maximum number of read set upload parts returned in a page.
|
2637
|
+
#
|
2638
|
+
# @option params [String] :next_token
|
2639
|
+
# Next token returned in the response of a previous
|
2640
|
+
# ListReadSetUploadPartsRequest call. Used to get the next page of
|
2641
|
+
# results.
|
2642
|
+
#
|
2643
|
+
# @option params [Types::ReadSetUploadPartListFilter] :filter
|
2644
|
+
# Attributes used to filter for a specific subset of read set part
|
2645
|
+
# uploads.
|
2646
|
+
#
|
2647
|
+
# @return [Types::ListReadSetUploadPartsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2648
|
+
#
|
2649
|
+
# * {Types::ListReadSetUploadPartsResponse#next_token #next_token} => String
|
2650
|
+
# * {Types::ListReadSetUploadPartsResponse#parts #parts} => Array<Types::ReadSetUploadPartListItem>
|
2651
|
+
#
|
2652
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2653
|
+
#
|
2654
|
+
# @example Request syntax with placeholder values
|
2655
|
+
#
|
2656
|
+
# resp = client.list_read_set_upload_parts({
|
2657
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2658
|
+
# upload_id: "UploadId", # required
|
2659
|
+
# part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2
|
2660
|
+
# max_results: 1,
|
2661
|
+
# next_token: "NextToken",
|
2662
|
+
# filter: {
|
2663
|
+
# created_after: Time.now,
|
2664
|
+
# created_before: Time.now,
|
2665
|
+
# },
|
2666
|
+
# })
|
2667
|
+
#
|
2668
|
+
# @example Response structure
|
2669
|
+
#
|
2670
|
+
# resp.next_token #=> String
|
2671
|
+
# resp.parts #=> Array
|
2672
|
+
# resp.parts[0].part_number #=> Integer
|
2673
|
+
# resp.parts[0].part_size #=> Integer
|
2674
|
+
# resp.parts[0].part_source #=> String, one of "SOURCE1", "SOURCE2"
|
2675
|
+
# resp.parts[0].checksum #=> String
|
2676
|
+
# resp.parts[0].creation_time #=> Time
|
2677
|
+
# resp.parts[0].last_updated_time #=> Time
|
2678
|
+
#
|
2679
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetUploadParts AWS API Documentation
|
2680
|
+
#
|
2681
|
+
# @overload list_read_set_upload_parts(params = {})
|
2682
|
+
# @param [Hash] params ({})
|
2683
|
+
def list_read_set_upload_parts(params = {}, options = {})
|
2684
|
+
req = build_request(:list_read_set_upload_parts, params)
|
2685
|
+
req.send_request(options)
|
2686
|
+
end
|
2687
|
+
|
2373
2688
|
# Retrieves a list of read sets.
|
2374
2689
|
#
|
2375
|
-
# @option params [
|
2376
|
-
#
|
2690
|
+
# @option params [required, String] :sequence_store_id
|
2691
|
+
# The jobs' sequence store ID.
|
2377
2692
|
#
|
2378
2693
|
# @option params [Integer] :max_results
|
2379
2694
|
# The maximum number of read sets to return in one page of results.
|
@@ -2382,8 +2697,8 @@ module Aws::Omics
|
|
2382
2697
|
# Specify the pagination token from a previous request to retrieve the
|
2383
2698
|
# next page of results.
|
2384
2699
|
#
|
2385
|
-
# @option params [
|
2386
|
-
#
|
2700
|
+
# @option params [Types::ReadSetFilter] :filter
|
2701
|
+
# A filter to apply to the list.
|
2387
2702
|
#
|
2388
2703
|
# @return [Types::ListReadSetsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2389
2704
|
#
|
@@ -2395,37 +2710,41 @@ module Aws::Omics
|
|
2395
2710
|
# @example Request syntax with placeholder values
|
2396
2711
|
#
|
2397
2712
|
# resp = client.list_read_sets({
|
2713
|
+
# sequence_store_id: "SequenceStoreId", # required
|
2714
|
+
# max_results: 1,
|
2715
|
+
# next_token: "NextToken",
|
2398
2716
|
# filter: {
|
2399
|
-
# created_after: Time.now,
|
2400
|
-
# created_before: Time.now,
|
2401
2717
|
# name: "ReadSetName",
|
2718
|
+
# status: "ARCHIVED", # accepts ARCHIVED, ACTIVATING, ACTIVE, DELETING, DELETED, PROCESSING_UPLOAD, UPLOAD_FAILED
|
2402
2719
|
# reference_arn: "ReferenceArn",
|
2403
|
-
#
|
2720
|
+
# created_after: Time.now,
|
2721
|
+
# created_before: Time.now,
|
2722
|
+
# sample_id: "SampleId",
|
2723
|
+
# subject_id: "SubjectId",
|
2724
|
+
# generated_from: "GeneratedFrom",
|
2404
2725
|
# },
|
2405
|
-
# max_results: 1,
|
2406
|
-
# next_token: "NextToken",
|
2407
|
-
# sequence_store_id: "SequenceStoreId", # required
|
2408
2726
|
# })
|
2409
2727
|
#
|
2410
2728
|
# @example Response structure
|
2411
2729
|
#
|
2412
2730
|
# resp.next_token #=> String
|
2413
2731
|
# resp.read_sets #=> Array
|
2414
|
-
# resp.read_sets[0].arn #=> String
|
2415
|
-
# resp.read_sets[0].creation_time #=> Time
|
2416
|
-
# resp.read_sets[0].description #=> String
|
2417
|
-
# resp.read_sets[0].file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
2418
2732
|
# resp.read_sets[0].id #=> String
|
2733
|
+
# resp.read_sets[0].arn #=> String
|
2734
|
+
# resp.read_sets[0].sequence_store_id #=> String
|
2735
|
+
# resp.read_sets[0].subject_id #=> String
|
2736
|
+
# resp.read_sets[0].sample_id #=> String
|
2737
|
+
# resp.read_sets[0].status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "PROCESSING_UPLOAD", "UPLOAD_FAILED"
|
2419
2738
|
# resp.read_sets[0].name #=> String
|
2739
|
+
# resp.read_sets[0].description #=> String
|
2420
2740
|
# resp.read_sets[0].reference_arn #=> String
|
2421
|
-
# resp.read_sets[0].
|
2422
|
-
# resp.read_sets[0].sequence_information.alignment #=> String
|
2423
|
-
# resp.read_sets[0].sequence_information.generated_from #=> String
|
2424
|
-
# resp.read_sets[0].sequence_information.total_base_count #=> Integer
|
2741
|
+
# resp.read_sets[0].file_type #=> String, one of "FASTQ", "BAM", "CRAM"
|
2425
2742
|
# resp.read_sets[0].sequence_information.total_read_count #=> Integer
|
2426
|
-
# resp.read_sets[0].
|
2427
|
-
# resp.read_sets[0].
|
2428
|
-
# resp.read_sets[0].
|
2743
|
+
# resp.read_sets[0].sequence_information.total_base_count #=> Integer
|
2744
|
+
# resp.read_sets[0].sequence_information.generated_from #=> String
|
2745
|
+
# resp.read_sets[0].sequence_information.alignment #=> String
|
2746
|
+
# resp.read_sets[0].creation_time #=> Time
|
2747
|
+
# resp.read_sets[0].status_message #=> String
|
2429
2748
|
#
|
2430
2749
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSets AWS API Documentation
|
2431
2750
|
#
|
@@ -2438,9 +2757,6 @@ module Aws::Omics
|
|
2438
2757
|
|
2439
2758
|
# Retrieves a list of reference import jobs.
|
2440
2759
|
#
|
2441
|
-
# @option params [Types::ImportReferenceFilter] :filter
|
2442
|
-
# A filter to apply to the list.
|
2443
|
-
#
|
2444
2760
|
# @option params [Integer] :max_results
|
2445
2761
|
# The maximum number of jobs to return in one page of results.
|
2446
2762
|
#
|
@@ -2451,36 +2767,39 @@ module Aws::Omics
|
|
2451
2767
|
# @option params [required, String] :reference_store_id
|
2452
2768
|
# The job's reference store ID.
|
2453
2769
|
#
|
2770
|
+
# @option params [Types::ImportReferenceFilter] :filter
|
2771
|
+
# A filter to apply to the list.
|
2772
|
+
#
|
2454
2773
|
# @return [Types::ListReferenceImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2455
2774
|
#
|
2456
|
-
# * {Types::ListReferenceImportJobsResponse#import_jobs #import_jobs} => Array<Types::ImportReferenceJobItem>
|
2457
2775
|
# * {Types::ListReferenceImportJobsResponse#next_token #next_token} => String
|
2776
|
+
# * {Types::ListReferenceImportJobsResponse#import_jobs #import_jobs} => Array<Types::ImportReferenceJobItem>
|
2458
2777
|
#
|
2459
2778
|
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2460
2779
|
#
|
2461
2780
|
# @example Request syntax with placeholder values
|
2462
2781
|
#
|
2463
2782
|
# resp = client.list_reference_import_jobs({
|
2783
|
+
# max_results: 1,
|
2784
|
+
# next_token: "NextToken",
|
2785
|
+
# reference_store_id: "ReferenceStoreId", # required
|
2464
2786
|
# filter: {
|
2787
|
+
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2465
2788
|
# created_after: Time.now,
|
2466
2789
|
# created_before: Time.now,
|
2467
|
-
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
|
2468
2790
|
# },
|
2469
|
-
# max_results: 1,
|
2470
|
-
# next_token: "NextToken",
|
2471
|
-
# reference_store_id: "ReferenceStoreId", # required
|
2472
2791
|
# })
|
2473
2792
|
#
|
2474
2793
|
# @example Response structure
|
2475
2794
|
#
|
2795
|
+
# resp.next_token #=> String
|
2476
2796
|
# resp.import_jobs #=> Array
|
2477
|
-
# resp.import_jobs[0].completion_time #=> Time
|
2478
|
-
# resp.import_jobs[0].creation_time #=> Time
|
2479
2797
|
# resp.import_jobs[0].id #=> String
|
2480
2798
|
# resp.import_jobs[0].reference_store_id #=> String
|
2481
2799
|
# resp.import_jobs[0].role_arn #=> String
|
2482
2800
|
# resp.import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
2483
|
-
# resp.
|
2801
|
+
# resp.import_jobs[0].creation_time #=> Time
|
2802
|
+
# resp.import_jobs[0].completion_time #=> Time
|
2484
2803
|
#
|
2485
2804
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferenceImportJobs AWS API Documentation
|
2486
2805
|
#
|
@@ -2493,9 +2812,6 @@ module Aws::Omics
|
|
2493
2812
|
|
2494
2813
|
# Retrieves a list of reference stores.
|
2495
2814
|
#
|
2496
|
-
# @option params [Types::ReferenceStoreFilter] :filter
|
2497
|
-
# A filter to apply to the list.
|
2498
|
-
#
|
2499
2815
|
# @option params [Integer] :max_results
|
2500
2816
|
# The maximum number of stores to return in one page of results.
|
2501
2817
|
#
|
@@ -2503,6 +2819,9 @@ module Aws::Omics
|
|
2503
2819
|
# Specify the pagination token from a previous request to retrieve the
|
2504
2820
|
# next page of results.
|
2505
2821
|
#
|
2822
|
+
# @option params [Types::ReferenceStoreFilter] :filter
|
2823
|
+
# A filter to apply to the list.
|
2824
|
+
#
|
2506
2825
|
# @return [Types::ListReferenceStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2507
2826
|
#
|
2508
2827
|
# * {Types::ListReferenceStoresResponse#next_token #next_token} => String
|
@@ -2513,13 +2832,13 @@ module Aws::Omics
|
|
2513
2832
|
# @example Request syntax with placeholder values
|
2514
2833
|
#
|
2515
2834
|
# resp = client.list_reference_stores({
|
2835
|
+
# max_results: 1,
|
2836
|
+
# next_token: "NextToken",
|
2516
2837
|
# filter: {
|
2838
|
+
# name: "ReferenceStoreName",
|
2517
2839
|
# created_after: Time.now,
|
2518
2840
|
# created_before: Time.now,
|
2519
|
-
# name: "ReferenceStoreName",
|
2520
2841
|
# },
|
2521
|
-
# max_results: 1,
|
2522
|
-
# next_token: "NextToken",
|
2523
2842
|
# })
|
2524
2843
|
#
|
2525
2844
|
# @example Response structure
|
@@ -2527,12 +2846,12 @@ module Aws::Omics
|
|
2527
2846
|
# resp.next_token #=> String
|
2528
2847
|
# resp.reference_stores #=> Array
|
2529
2848
|
# resp.reference_stores[0].arn #=> String
|
2530
|
-
# resp.reference_stores[0].creation_time #=> Time
|
2531
|
-
# resp.reference_stores[0].description #=> String
|
2532
2849
|
# resp.reference_stores[0].id #=> String
|
2533
2850
|
# resp.reference_stores[0].name #=> String
|
2534
|
-
# resp.reference_stores[0].
|
2851
|
+
# resp.reference_stores[0].description #=> String
|
2535
2852
|
# resp.reference_stores[0].sse_config.type #=> String, one of "KMS"
|
2853
|
+
# resp.reference_stores[0].sse_config.key_arn #=> String
|
2854
|
+
# resp.reference_stores[0].creation_time #=> Time
|
2536
2855
|
#
|
2537
2856
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferenceStores AWS API Documentation
|
2538
2857
|
#
|
@@ -2545,8 +2864,8 @@ module Aws::Omics
|
|
2545
2864
|
|
2546
2865
|
# Retrieves a list of references.
|
2547
2866
|
#
|
2548
|
-
# @option params [
|
2549
|
-
#
|
2867
|
+
# @option params [required, String] :reference_store_id
|
2868
|
+
# The references' reference store ID.
|
2550
2869
|
#
|
2551
2870
|
# @option params [Integer] :max_results
|
2552
2871
|
# The maximum number of references to return in one page of results.
|
@@ -2555,8 +2874,8 @@ module Aws::Omics
|
|
2555
2874
|
# Specify the pagination token from a previous request to retrieve the
|
2556
2875
|
# next page of results.
|
2557
2876
|
#
|
2558
|
-
# @option params [
|
2559
|
-
#
|
2877
|
+
# @option params [Types::ReferenceFilter] :filter
|
2878
|
+
# A filter to apply to the list.
|
2560
2879
|
#
|
2561
2880
|
# @return [Types::ListReferencesResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2562
2881
|
#
|
@@ -2568,29 +2887,29 @@ module Aws::Omics
|
|
2568
2887
|
# @example Request syntax with placeholder values
|
2569
2888
|
#
|
2570
2889
|
# resp = client.list_references({
|
2890
|
+
# reference_store_id: "ReferenceStoreId", # required
|
2891
|
+
# max_results: 1,
|
2892
|
+
# next_token: "NextToken",
|
2571
2893
|
# filter: {
|
2894
|
+
# name: "ReferenceName",
|
2895
|
+
# md5: "Md5",
|
2572
2896
|
# created_after: Time.now,
|
2573
2897
|
# created_before: Time.now,
|
2574
|
-
# md5: "Md5",
|
2575
|
-
# name: "ReferenceName",
|
2576
2898
|
# },
|
2577
|
-
# max_results: 1,
|
2578
|
-
# next_token: "NextToken",
|
2579
|
-
# reference_store_id: "ReferenceStoreId", # required
|
2580
2899
|
# })
|
2581
2900
|
#
|
2582
2901
|
# @example Response structure
|
2583
2902
|
#
|
2584
2903
|
# resp.next_token #=> String
|
2585
2904
|
# resp.references #=> Array
|
2586
|
-
# resp.references[0].arn #=> String
|
2587
|
-
# resp.references[0].creation_time #=> Time
|
2588
|
-
# resp.references[0].description #=> String
|
2589
2905
|
# resp.references[0].id #=> String
|
2590
|
-
# resp.references[0].
|
2591
|
-
# resp.references[0].name #=> String
|
2906
|
+
# resp.references[0].arn #=> String
|
2592
2907
|
# resp.references[0].reference_store_id #=> String
|
2908
|
+
# resp.references[0].md5 #=> String
|
2593
2909
|
# resp.references[0].status #=> String, one of "ACTIVE", "DELETING", "DELETED"
|
2910
|
+
# resp.references[0].name #=> String
|
2911
|
+
# resp.references[0].description #=> String
|
2912
|
+
# resp.references[0].creation_time #=> Time
|
2594
2913
|
# resp.references[0].update_time #=> Time
|
2595
2914
|
#
|
2596
2915
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferences AWS API Documentation
|
@@ -2604,9 +2923,6 @@ module Aws::Omics
|
|
2604
2923
|
|
2605
2924
|
# Retrieves a list of run groups.
|
2606
2925
|
#
|
2607
|
-
# @option params [Integer] :max_results
|
2608
|
-
# The maximum number of run groups to return in one page of results.
|
2609
|
-
#
|
2610
2926
|
# @option params [String] :name
|
2611
2927
|
# The run groups' name.
|
2612
2928
|
#
|
@@ -2614,6 +2930,9 @@ module Aws::Omics
|
|
2614
2930
|
# Specify the pagination token from a previous request to retrieve the
|
2615
2931
|
# next page of results.
|
2616
2932
|
#
|
2933
|
+
# @option params [Integer] :max_results
|
2934
|
+
# The maximum number of run groups to return in one page of results.
|
2935
|
+
#
|
2617
2936
|
# @return [Types::ListRunGroupsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2618
2937
|
#
|
2619
2938
|
# * {Types::ListRunGroupsResponse#items #items} => Array<Types::RunGroupListItem>
|
@@ -2624,21 +2943,22 @@ module Aws::Omics
|
|
2624
2943
|
# @example Request syntax with placeholder values
|
2625
2944
|
#
|
2626
2945
|
# resp = client.list_run_groups({
|
2627
|
-
# max_results: 1,
|
2628
2946
|
# name: "RunGroupName",
|
2629
2947
|
# starting_token: "RunGroupListToken",
|
2948
|
+
# max_results: 1,
|
2630
2949
|
# })
|
2631
2950
|
#
|
2632
2951
|
# @example Response structure
|
2633
2952
|
#
|
2634
2953
|
# resp.items #=> Array
|
2635
2954
|
# resp.items[0].arn #=> String
|
2636
|
-
# resp.items[0].creation_time #=> Time
|
2637
2955
|
# resp.items[0].id #=> String
|
2956
|
+
# resp.items[0].name #=> String
|
2638
2957
|
# resp.items[0].max_cpus #=> Integer
|
2639
|
-
# resp.items[0].max_duration #=> Integer
|
2640
2958
|
# resp.items[0].max_runs #=> Integer
|
2641
|
-
# resp.items[0].
|
2959
|
+
# resp.items[0].max_duration #=> Integer
|
2960
|
+
# resp.items[0].creation_time #=> Time
|
2961
|
+
# resp.items[0].max_gpus #=> Integer
|
2642
2962
|
# resp.next_token #=> String
|
2643
2963
|
#
|
2644
2964
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunGroups AWS API Documentation
|
@@ -2655,15 +2975,15 @@ module Aws::Omics
|
|
2655
2975
|
# @option params [required, String] :id
|
2656
2976
|
# The run's ID.
|
2657
2977
|
#
|
2658
|
-
# @option params [
|
2659
|
-
#
|
2978
|
+
# @option params [String] :status
|
2979
|
+
# Filter the list by status.
|
2660
2980
|
#
|
2661
2981
|
# @option params [String] :starting_token
|
2662
2982
|
# Specify the pagination token from a previous request to retrieve the
|
2663
2983
|
# next page of results.
|
2664
2984
|
#
|
2665
|
-
# @option params [
|
2666
|
-
#
|
2985
|
+
# @option params [Integer] :max_results
|
2986
|
+
# The maximum number of run tasks to return in one page of results.
|
2667
2987
|
#
|
2668
2988
|
# @return [Types::ListRunTasksResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2669
2989
|
#
|
@@ -2676,22 +2996,23 @@ module Aws::Omics
|
|
2676
2996
|
#
|
2677
2997
|
# resp = client.list_run_tasks({
|
2678
2998
|
# id: "RunId", # required
|
2679
|
-
# max_results: 1,
|
2680
|
-
# starting_token: "TaskListToken",
|
2681
2999
|
# status: "PENDING", # accepts PENDING, STARTING, RUNNING, STOPPING, COMPLETED, CANCELLED, FAILED
|
3000
|
+
# starting_token: "TaskListToken",
|
3001
|
+
# max_results: 1,
|
2682
3002
|
# })
|
2683
3003
|
#
|
2684
3004
|
# @example Response structure
|
2685
3005
|
#
|
2686
3006
|
# resp.items #=> Array
|
3007
|
+
# resp.items[0].task_id #=> String
|
3008
|
+
# resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
|
3009
|
+
# resp.items[0].name #=> String
|
2687
3010
|
# resp.items[0].cpus #=> Integer
|
2688
|
-
# resp.items[0].creation_time #=> Time
|
2689
3011
|
# resp.items[0].memory #=> Integer
|
2690
|
-
# resp.items[0].
|
3012
|
+
# resp.items[0].creation_time #=> Time
|
2691
3013
|
# resp.items[0].start_time #=> Time
|
2692
|
-
# resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
|
2693
3014
|
# resp.items[0].stop_time #=> Time
|
2694
|
-
# resp.items[0].
|
3015
|
+
# resp.items[0].gpus #=> Integer
|
2695
3016
|
# resp.next_token #=> String
|
2696
3017
|
#
|
2697
3018
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunTasks AWS API Documentation
|
@@ -2705,9 +3026,6 @@ module Aws::Omics
|
|
2705
3026
|
|
2706
3027
|
# Retrieves a list of runs.
|
2707
3028
|
#
|
2708
|
-
# @option params [Integer] :max_results
|
2709
|
-
# The maximum number of runs to return in one page of results.
|
2710
|
-
#
|
2711
3029
|
# @option params [String] :name
|
2712
3030
|
# Filter the list by run name.
|
2713
3031
|
#
|
@@ -2718,6 +3036,12 @@ module Aws::Omics
|
|
2718
3036
|
# Specify the pagination token from a previous request to retrieve the
|
2719
3037
|
# next page of results.
|
2720
3038
|
#
|
3039
|
+
# @option params [Integer] :max_results
|
3040
|
+
# The maximum number of runs to return in one page of results.
|
3041
|
+
#
|
3042
|
+
# @option params [String] :status
|
3043
|
+
# The status of a run.
|
3044
|
+
#
|
2721
3045
|
# @return [Types::ListRunsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2722
3046
|
#
|
2723
3047
|
# * {Types::ListRunsResponse#items #items} => Array<Types::RunListItem>
|
@@ -2728,25 +3052,26 @@ module Aws::Omics
|
|
2728
3052
|
# @example Request syntax with placeholder values
|
2729
3053
|
#
|
2730
3054
|
# resp = client.list_runs({
|
2731
|
-
# max_results: 1,
|
2732
3055
|
# name: "RunName",
|
2733
3056
|
# run_group_id: "RunGroupId",
|
2734
3057
|
# starting_token: "RunListToken",
|
3058
|
+
# max_results: 1,
|
3059
|
+
# status: "PENDING", # accepts PENDING, STARTING, RUNNING, STOPPING, COMPLETED, DELETED, CANCELLED, FAILED
|
2735
3060
|
# })
|
2736
3061
|
#
|
2737
3062
|
# @example Response structure
|
2738
3063
|
#
|
2739
3064
|
# resp.items #=> Array
|
2740
3065
|
# resp.items[0].arn #=> String
|
2741
|
-
# resp.items[0].creation_time #=> Time
|
2742
3066
|
# resp.items[0].id #=> String
|
3067
|
+
# resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
|
3068
|
+
# resp.items[0].workflow_id #=> String
|
2743
3069
|
# resp.items[0].name #=> String
|
2744
3070
|
# resp.items[0].priority #=> Integer
|
3071
|
+
# resp.items[0].storage_capacity #=> Integer
|
3072
|
+
# resp.items[0].creation_time #=> Time
|
2745
3073
|
# resp.items[0].start_time #=> Time
|
2746
|
-
# resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
|
2747
3074
|
# resp.items[0].stop_time #=> Time
|
2748
|
-
# resp.items[0].storage_capacity #=> Integer
|
2749
|
-
# resp.items[0].workflow_id #=> String
|
2750
3075
|
# resp.next_token #=> String
|
2751
3076
|
#
|
2752
3077
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRuns AWS API Documentation
|
@@ -2760,9 +3085,6 @@ module Aws::Omics
|
|
2760
3085
|
|
2761
3086
|
# Retrieves a list of sequence stores.
|
2762
3087
|
#
|
2763
|
-
# @option params [Types::SequenceStoreFilter] :filter
|
2764
|
-
# A filter to apply to the list.
|
2765
|
-
#
|
2766
3088
|
# @option params [Integer] :max_results
|
2767
3089
|
# The maximum number of stores to return in one page of results.
|
2768
3090
|
#
|
@@ -2770,6 +3092,9 @@ module Aws::Omics
|
|
2770
3092
|
# Specify the pagination token from a previous request to retrieve the
|
2771
3093
|
# next page of results.
|
2772
3094
|
#
|
3095
|
+
# @option params [Types::SequenceStoreFilter] :filter
|
3096
|
+
# A filter to apply to the list.
|
3097
|
+
#
|
2773
3098
|
# @return [Types::ListSequenceStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2774
3099
|
#
|
2775
3100
|
# * {Types::ListSequenceStoresResponse#next_token #next_token} => String
|
@@ -2780,13 +3105,13 @@ module Aws::Omics
|
|
2780
3105
|
# @example Request syntax with placeholder values
|
2781
3106
|
#
|
2782
3107
|
# resp = client.list_sequence_stores({
|
3108
|
+
# max_results: 1,
|
3109
|
+
# next_token: "NextToken",
|
2783
3110
|
# filter: {
|
3111
|
+
# name: "SequenceStoreName",
|
2784
3112
|
# created_after: Time.now,
|
2785
3113
|
# created_before: Time.now,
|
2786
|
-
# name: "SequenceStoreName",
|
2787
3114
|
# },
|
2788
|
-
# max_results: 1,
|
2789
|
-
# next_token: "NextToken",
|
2790
3115
|
# })
|
2791
3116
|
#
|
2792
3117
|
# @example Response structure
|
@@ -2794,12 +3119,13 @@ module Aws::Omics
|
|
2794
3119
|
# resp.next_token #=> String
|
2795
3120
|
# resp.sequence_stores #=> Array
|
2796
3121
|
# resp.sequence_stores[0].arn #=> String
|
2797
|
-
# resp.sequence_stores[0].creation_time #=> Time
|
2798
|
-
# resp.sequence_stores[0].description #=> String
|
2799
3122
|
# resp.sequence_stores[0].id #=> String
|
2800
3123
|
# resp.sequence_stores[0].name #=> String
|
2801
|
-
# resp.sequence_stores[0].
|
3124
|
+
# resp.sequence_stores[0].description #=> String
|
2802
3125
|
# resp.sequence_stores[0].sse_config.type #=> String, one of "KMS"
|
3126
|
+
# resp.sequence_stores[0].sse_config.key_arn #=> String
|
3127
|
+
# resp.sequence_stores[0].creation_time #=> Time
|
3128
|
+
# resp.sequence_stores[0].fallback_location #=> String
|
2803
3129
|
#
|
2804
3130
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListSequenceStores AWS API Documentation
|
2805
3131
|
#
|
@@ -2841,50 +3167,52 @@ module Aws::Omics
|
|
2841
3167
|
|
2842
3168
|
# Retrieves a list of variant import jobs.
|
2843
3169
|
#
|
2844
|
-
# @option params [
|
2845
|
-
#
|
3170
|
+
# @option params [Integer] :max_results
|
3171
|
+
# The maximum number of import jobs to return in one page of results.
|
2846
3172
|
#
|
2847
3173
|
# @option params [Array<String>] :ids
|
2848
3174
|
# A list of job IDs.
|
2849
3175
|
#
|
2850
|
-
# @option params [Integer] :max_results
|
2851
|
-
# The maximum number of import jobs to return in one page of results.
|
2852
|
-
#
|
2853
3176
|
# @option params [String] :next_token
|
2854
3177
|
# Specify the pagination token from a previous request to retrieve the
|
2855
3178
|
# next page of results.
|
2856
3179
|
#
|
3180
|
+
# @option params [Types::ListVariantImportJobsFilter] :filter
|
3181
|
+
# A filter to apply to the list.
|
3182
|
+
#
|
2857
3183
|
# @return [Types::ListVariantImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2858
3184
|
#
|
2859
|
-
# * {Types::ListVariantImportJobsResponse#next_token #next_token} => String
|
2860
3185
|
# * {Types::ListVariantImportJobsResponse#variant_import_jobs #variant_import_jobs} => Array<Types::VariantImportJobItem>
|
3186
|
+
# * {Types::ListVariantImportJobsResponse#next_token #next_token} => String
|
2861
3187
|
#
|
2862
3188
|
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2863
3189
|
#
|
2864
3190
|
# @example Request syntax with placeholder values
|
2865
3191
|
#
|
2866
3192
|
# resp = client.list_variant_import_jobs({
|
3193
|
+
# max_results: 1,
|
3194
|
+
# ids: ["ResourceIdentifier"],
|
3195
|
+
# next_token: "ListVariantImportJobsRequestNextTokenString",
|
2867
3196
|
# filter: {
|
2868
3197
|
# status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED, COMPLETED_WITH_FAILURES
|
2869
3198
|
# store_name: "String",
|
2870
3199
|
# },
|
2871
|
-
# ids: ["ResourceIdentifier"],
|
2872
|
-
# max_results: 1,
|
2873
|
-
# next_token: "ListVariantImportJobsRequestNextTokenString",
|
2874
3200
|
# })
|
2875
3201
|
#
|
2876
3202
|
# @example Response structure
|
2877
3203
|
#
|
2878
|
-
# resp.next_token #=> String
|
2879
3204
|
# resp.variant_import_jobs #=> Array
|
2880
|
-
# resp.variant_import_jobs[0].completion_time #=> Time
|
2881
|
-
# resp.variant_import_jobs[0].creation_time #=> Time
|
2882
|
-
# resp.variant_import_jobs[0].destination_name #=> String
|
2883
3205
|
# resp.variant_import_jobs[0].id #=> String
|
3206
|
+
# resp.variant_import_jobs[0].destination_name #=> String
|
2884
3207
|
# resp.variant_import_jobs[0].role_arn #=> String
|
2885
|
-
# resp.variant_import_jobs[0].run_left_normalization #=> Boolean
|
2886
3208
|
# resp.variant_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
3209
|
+
# resp.variant_import_jobs[0].creation_time #=> Time
|
2887
3210
|
# resp.variant_import_jobs[0].update_time #=> Time
|
3211
|
+
# resp.variant_import_jobs[0].completion_time #=> Time
|
3212
|
+
# resp.variant_import_jobs[0].run_left_normalization #=> Boolean
|
3213
|
+
# resp.variant_import_jobs[0].annotation_fields #=> Hash
|
3214
|
+
# resp.variant_import_jobs[0].annotation_fields["AnnotationFieldMapKeyString"] #=> String
|
3215
|
+
# resp.next_token #=> String
|
2888
3216
|
#
|
2889
3217
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListVariantImportJobs AWS API Documentation
|
2890
3218
|
#
|
@@ -2897,53 +3225,53 @@ module Aws::Omics
|
|
2897
3225
|
|
2898
3226
|
# Retrieves a list of variant stores.
|
2899
3227
|
#
|
2900
|
-
# @option params [
|
2901
|
-
#
|
3228
|
+
# @option params [Integer] :max_results
|
3229
|
+
# The maximum number of stores to return in one page of results.
|
2902
3230
|
#
|
2903
3231
|
# @option params [Array<String>] :ids
|
2904
3232
|
# A list of store IDs.
|
2905
3233
|
#
|
2906
|
-
# @option params [Integer] :max_results
|
2907
|
-
# The maximum number of stores to return in one page of results.
|
2908
|
-
#
|
2909
3234
|
# @option params [String] :next_token
|
2910
3235
|
# Specify the pagination token from a previous request to retrieve the
|
2911
3236
|
# next page of results.
|
2912
3237
|
#
|
3238
|
+
# @option params [Types::ListVariantStoresFilter] :filter
|
3239
|
+
# A filter to apply to the list.
|
3240
|
+
#
|
2913
3241
|
# @return [Types::ListVariantStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2914
3242
|
#
|
2915
|
-
# * {Types::ListVariantStoresResponse#next_token #next_token} => String
|
2916
3243
|
# * {Types::ListVariantStoresResponse#variant_stores #variant_stores} => Array<Types::VariantStoreItem>
|
3244
|
+
# * {Types::ListVariantStoresResponse#next_token #next_token} => String
|
2917
3245
|
#
|
2918
3246
|
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2919
3247
|
#
|
2920
3248
|
# @example Request syntax with placeholder values
|
2921
3249
|
#
|
2922
3250
|
# resp = client.list_variant_stores({
|
3251
|
+
# max_results: 1,
|
3252
|
+
# ids: ["ResourceIdentifier"],
|
3253
|
+
# next_token: "ListVariantStoresRequestNextTokenString",
|
2923
3254
|
# filter: {
|
2924
3255
|
# status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
|
2925
3256
|
# },
|
2926
|
-
# ids: ["ResourceIdentifier"],
|
2927
|
-
# max_results: 1,
|
2928
|
-
# next_token: "ListVariantStoresRequestNextTokenString",
|
2929
3257
|
# })
|
2930
3258
|
#
|
2931
3259
|
# @example Response structure
|
2932
3260
|
#
|
2933
|
-
# resp.next_token #=> String
|
2934
3261
|
# resp.variant_stores #=> Array
|
2935
|
-
# resp.variant_stores[0].creation_time #=> Time
|
2936
|
-
# resp.variant_stores[0].description #=> String
|
2937
3262
|
# resp.variant_stores[0].id #=> String
|
2938
|
-
# resp.variant_stores[0].name #=> String
|
2939
3263
|
# resp.variant_stores[0].reference.reference_arn #=> String
|
2940
|
-
# resp.variant_stores[0].sse_config.key_arn #=> String
|
2941
|
-
# resp.variant_stores[0].sse_config.type #=> String, one of "KMS"
|
2942
3264
|
# resp.variant_stores[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
2943
|
-
# resp.variant_stores[0].status_message #=> String
|
2944
3265
|
# resp.variant_stores[0].store_arn #=> String
|
2945
|
-
# resp.variant_stores[0].
|
3266
|
+
# resp.variant_stores[0].name #=> String
|
3267
|
+
# resp.variant_stores[0].description #=> String
|
3268
|
+
# resp.variant_stores[0].sse_config.type #=> String, one of "KMS"
|
3269
|
+
# resp.variant_stores[0].sse_config.key_arn #=> String
|
3270
|
+
# resp.variant_stores[0].creation_time #=> Time
|
2946
3271
|
# resp.variant_stores[0].update_time #=> Time
|
3272
|
+
# resp.variant_stores[0].status_message #=> String
|
3273
|
+
# resp.variant_stores[0].store_size_bytes #=> Integer
|
3274
|
+
# resp.next_token #=> String
|
2947
3275
|
#
|
2948
3276
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListVariantStores AWS API Documentation
|
2949
3277
|
#
|
@@ -2956,8 +3284,8 @@ module Aws::Omics
|
|
2956
3284
|
|
2957
3285
|
# Retrieves a list of workflows.
|
2958
3286
|
#
|
2959
|
-
# @option params [
|
2960
|
-
# The
|
3287
|
+
# @option params [String] :type
|
3288
|
+
# The workflows' type.
|
2961
3289
|
#
|
2962
3290
|
# @option params [String] :name
|
2963
3291
|
# The workflows' name.
|
@@ -2966,8 +3294,8 @@ module Aws::Omics
|
|
2966
3294
|
# Specify the pagination token from a previous request to retrieve the
|
2967
3295
|
# next page of results.
|
2968
3296
|
#
|
2969
|
-
# @option params [
|
2970
|
-
# The workflows
|
3297
|
+
# @option params [Integer] :max_results
|
3298
|
+
# The maximum number of workflows to return in one page of results.
|
2971
3299
|
#
|
2972
3300
|
# @return [Types::ListWorkflowsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2973
3301
|
#
|
@@ -2979,22 +3307,24 @@ module Aws::Omics
|
|
2979
3307
|
# @example Request syntax with placeholder values
|
2980
3308
|
#
|
2981
3309
|
# resp = client.list_workflows({
|
2982
|
-
#
|
3310
|
+
# type: "PRIVATE", # accepts PRIVATE, READY2RUN
|
2983
3311
|
# name: "WorkflowName",
|
2984
3312
|
# starting_token: "WorkflowListToken",
|
2985
|
-
#
|
3313
|
+
# max_results: 1,
|
2986
3314
|
# })
|
2987
3315
|
#
|
2988
3316
|
# @example Response structure
|
2989
3317
|
#
|
2990
3318
|
# resp.items #=> Array
|
2991
3319
|
# resp.items[0].arn #=> String
|
2992
|
-
# resp.items[0].creation_time #=> Time
|
2993
|
-
# resp.items[0].digest #=> String
|
2994
3320
|
# resp.items[0].id #=> String
|
2995
3321
|
# resp.items[0].name #=> String
|
2996
|
-
# resp.items[0].status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
|
2997
|
-
# resp.items[0].type #=> String, one of "PRIVATE"
|
3322
|
+
# resp.items[0].status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
|
3323
|
+
# resp.items[0].type #=> String, one of "PRIVATE", "READY2RUN"
|
3324
|
+
# resp.items[0].digest #=> String
|
3325
|
+
# resp.items[0].creation_time #=> Time
|
3326
|
+
# resp.items[0].metadata #=> Hash
|
3327
|
+
# resp.items[0].metadata["WorkflowMetadataKey"] #=> String
|
2998
3328
|
# resp.next_token #=> String
|
2999
3329
|
#
|
3000
3330
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListWorkflows AWS API Documentation
|
@@ -3011,18 +3341,21 @@ module Aws::Omics
|
|
3011
3341
|
# @option params [required, String] :destination_name
|
3012
3342
|
# A destination annotation store for the job.
|
3013
3343
|
#
|
3014
|
-
# @option params [
|
3015
|
-
#
|
3344
|
+
# @option params [required, String] :role_arn
|
3345
|
+
# A service role for the job.
|
3016
3346
|
#
|
3017
3347
|
# @option params [required, Array<Types::AnnotationImportItemSource>] :items
|
3018
3348
|
# Items to import.
|
3019
3349
|
#
|
3020
|
-
# @option params [
|
3021
|
-
#
|
3350
|
+
# @option params [Types::FormatOptions] :format_options
|
3351
|
+
# Formatting options for the annotation file.
|
3022
3352
|
#
|
3023
3353
|
# @option params [Boolean] :run_left_normalization
|
3024
3354
|
# The job's left normalization setting.
|
3025
3355
|
#
|
3356
|
+
# @option params [Hash<String,String>] :annotation_fields
|
3357
|
+
# The annotation schema generated by the parsed annotation data.
|
3358
|
+
#
|
3026
3359
|
# @return [Types::StartAnnotationImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3027
3360
|
#
|
3028
3361
|
# * {Types::StartAnnotationImportResponse#job_id #job_id} => String
|
@@ -3031,32 +3364,35 @@ module Aws::Omics
|
|
3031
3364
|
#
|
3032
3365
|
# resp = client.start_annotation_import_job({
|
3033
3366
|
# destination_name: "StoreName", # required
|
3367
|
+
# role_arn: "Arn", # required
|
3368
|
+
# items: [ # required
|
3369
|
+
# {
|
3370
|
+
# source: "S3Uri", # required
|
3371
|
+
# },
|
3372
|
+
# ],
|
3034
3373
|
# format_options: {
|
3035
3374
|
# tsv_options: {
|
3036
3375
|
# read_options: {
|
3037
|
-
#
|
3376
|
+
# sep: "Separator",
|
3038
3377
|
# encoding: "Encoding",
|
3378
|
+
# quote: "Quote",
|
3379
|
+
# quote_all: false,
|
3039
3380
|
# escape: "EscapeChar",
|
3040
3381
|
# escape_quotes: false,
|
3382
|
+
# comment: "CommentChar",
|
3041
3383
|
# header: false,
|
3042
3384
|
# line_sep: "LineSep",
|
3043
|
-
# quote: "Quote",
|
3044
|
-
# quote_all: false,
|
3045
|
-
# sep: "Separator",
|
3046
3385
|
# },
|
3047
3386
|
# },
|
3048
3387
|
# vcf_options: {
|
3049
|
-
# ignore_filter_field: false,
|
3050
3388
|
# ignore_qual_field: false,
|
3389
|
+
# ignore_filter_field: false,
|
3051
3390
|
# },
|
3052
3391
|
# },
|
3053
|
-
# items: [ # required
|
3054
|
-
# {
|
3055
|
-
# source: "S3Uri", # required
|
3056
|
-
# },
|
3057
|
-
# ],
|
3058
|
-
# role_arn: "Arn", # required
|
3059
3392
|
# run_left_normalization: false,
|
3393
|
+
# annotation_fields: {
|
3394
|
+
# "AnnotationFieldMapKeyString" => "AnnotationFieldMapValueString",
|
3395
|
+
# },
|
3060
3396
|
# })
|
3061
3397
|
#
|
3062
3398
|
# @example Response structure
|
@@ -3075,28 +3411,28 @@ module Aws::Omics
|
|
3075
3411
|
# Activates an archived read set. To reduce storage charges, Amazon
|
3076
3412
|
# Omics archives unused read sets after 30 days.
|
3077
3413
|
#
|
3078
|
-
# @option params [String] :client_token
|
3079
|
-
# To ensure that jobs don't run multiple times, specify a unique token
|
3080
|
-
# for each job.
|
3081
|
-
#
|
3082
3414
|
# @option params [required, String] :sequence_store_id
|
3083
3415
|
# The read set's sequence store ID.
|
3084
3416
|
#
|
3417
|
+
# @option params [String] :client_token
|
3418
|
+
# To ensure that jobs don't run multiple times, specify a unique token
|
3419
|
+
# for each job.
|
3420
|
+
#
|
3085
3421
|
# @option params [required, Array<Types::StartReadSetActivationJobSourceItem>] :sources
|
3086
3422
|
# The job's source files.
|
3087
3423
|
#
|
3088
3424
|
# @return [Types::StartReadSetActivationJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3089
3425
|
#
|
3090
|
-
# * {Types::StartReadSetActivationJobResponse#creation_time #creation_time} => Time
|
3091
3426
|
# * {Types::StartReadSetActivationJobResponse#id #id} => String
|
3092
3427
|
# * {Types::StartReadSetActivationJobResponse#sequence_store_id #sequence_store_id} => String
|
3093
3428
|
# * {Types::StartReadSetActivationJobResponse#status #status} => String
|
3429
|
+
# * {Types::StartReadSetActivationJobResponse#creation_time #creation_time} => Time
|
3094
3430
|
#
|
3095
3431
|
# @example Request syntax with placeholder values
|
3096
3432
|
#
|
3097
3433
|
# resp = client.start_read_set_activation_job({
|
3098
|
-
# client_token: "ClientToken",
|
3099
3434
|
# sequence_store_id: "SequenceStoreId", # required
|
3435
|
+
# client_token: "ClientToken",
|
3100
3436
|
# sources: [ # required
|
3101
3437
|
# {
|
3102
3438
|
# read_set_id: "ReadSetId", # required
|
@@ -3106,10 +3442,10 @@ module Aws::Omics
|
|
3106
3442
|
#
|
3107
3443
|
# @example Response structure
|
3108
3444
|
#
|
3109
|
-
# resp.creation_time #=> Time
|
3110
3445
|
# resp.id #=> String
|
3111
3446
|
# resp.sequence_store_id #=> String
|
3112
3447
|
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
3448
|
+
# resp.creation_time #=> Time
|
3113
3449
|
#
|
3114
3450
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetActivationJob AWS API Documentation
|
3115
3451
|
#
|
@@ -3122,9 +3458,8 @@ module Aws::Omics
|
|
3122
3458
|
|
3123
3459
|
# Exports a read set to Amazon S3.
|
3124
3460
|
#
|
3125
|
-
# @option params [String] :
|
3126
|
-
#
|
3127
|
-
# for each job.
|
3461
|
+
# @option params [required, String] :sequence_store_id
|
3462
|
+
# The read set's sequence store ID.
|
3128
3463
|
#
|
3129
3464
|
# @option params [required, String] :destination
|
3130
3465
|
# A location for exported files in Amazon S3.
|
@@ -3132,27 +3467,28 @@ module Aws::Omics
|
|
3132
3467
|
# @option params [required, String] :role_arn
|
3133
3468
|
# A service role for the job.
|
3134
3469
|
#
|
3135
|
-
# @option params [
|
3136
|
-
#
|
3470
|
+
# @option params [String] :client_token
|
3471
|
+
# To ensure that jobs don't run multiple times, specify a unique token
|
3472
|
+
# for each job.
|
3137
3473
|
#
|
3138
3474
|
# @option params [required, Array<Types::ExportReadSet>] :sources
|
3139
3475
|
# The job's source files.
|
3140
3476
|
#
|
3141
3477
|
# @return [Types::StartReadSetExportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3142
3478
|
#
|
3143
|
-
# * {Types::StartReadSetExportJobResponse#creation_time #creation_time} => Time
|
3144
|
-
# * {Types::StartReadSetExportJobResponse#destination #destination} => String
|
3145
3479
|
# * {Types::StartReadSetExportJobResponse#id #id} => String
|
3146
3480
|
# * {Types::StartReadSetExportJobResponse#sequence_store_id #sequence_store_id} => String
|
3481
|
+
# * {Types::StartReadSetExportJobResponse#destination #destination} => String
|
3147
3482
|
# * {Types::StartReadSetExportJobResponse#status #status} => String
|
3483
|
+
# * {Types::StartReadSetExportJobResponse#creation_time #creation_time} => Time
|
3148
3484
|
#
|
3149
3485
|
# @example Request syntax with placeholder values
|
3150
3486
|
#
|
3151
3487
|
# resp = client.start_read_set_export_job({
|
3152
|
-
#
|
3488
|
+
# sequence_store_id: "SequenceStoreId", # required
|
3153
3489
|
# destination: "S3Destination", # required
|
3154
3490
|
# role_arn: "RoleArn", # required
|
3155
|
-
#
|
3491
|
+
# client_token: "ClientToken",
|
3156
3492
|
# sources: [ # required
|
3157
3493
|
# {
|
3158
3494
|
# read_set_id: "ReadSetId", # required
|
@@ -3162,11 +3498,11 @@ module Aws::Omics
|
|
3162
3498
|
#
|
3163
3499
|
# @example Response structure
|
3164
3500
|
#
|
3165
|
-
# resp.creation_time #=> Time
|
3166
|
-
# resp.destination #=> String
|
3167
3501
|
# resp.id #=> String
|
3168
3502
|
# resp.sequence_store_id #=> String
|
3503
|
+
# resp.destination #=> String
|
3169
3504
|
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
3505
|
+
# resp.creation_time #=> Time
|
3170
3506
|
#
|
3171
3507
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetExportJob AWS API Documentation
|
3172
3508
|
#
|
@@ -3179,46 +3515,46 @@ module Aws::Omics
|
|
3179
3515
|
|
3180
3516
|
# Starts a read set import job.
|
3181
3517
|
#
|
3182
|
-
# @option params [String] :
|
3183
|
-
#
|
3184
|
-
# for each job.
|
3518
|
+
# @option params [required, String] :sequence_store_id
|
3519
|
+
# The read set's sequence store ID.
|
3185
3520
|
#
|
3186
3521
|
# @option params [required, String] :role_arn
|
3187
3522
|
# A service role for the job.
|
3188
3523
|
#
|
3189
|
-
# @option params [
|
3190
|
-
#
|
3524
|
+
# @option params [String] :client_token
|
3525
|
+
# To ensure that jobs don't run multiple times, specify a unique token
|
3526
|
+
# for each job.
|
3191
3527
|
#
|
3192
3528
|
# @option params [required, Array<Types::StartReadSetImportJobSourceItem>] :sources
|
3193
3529
|
# The job's source files.
|
3194
3530
|
#
|
3195
3531
|
# @return [Types::StartReadSetImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3196
3532
|
#
|
3197
|
-
# * {Types::StartReadSetImportJobResponse#creation_time #creation_time} => Time
|
3198
3533
|
# * {Types::StartReadSetImportJobResponse#id #id} => String
|
3199
|
-
# * {Types::StartReadSetImportJobResponse#role_arn #role_arn} => String
|
3200
3534
|
# * {Types::StartReadSetImportJobResponse#sequence_store_id #sequence_store_id} => String
|
3535
|
+
# * {Types::StartReadSetImportJobResponse#role_arn #role_arn} => String
|
3201
3536
|
# * {Types::StartReadSetImportJobResponse#status #status} => String
|
3537
|
+
# * {Types::StartReadSetImportJobResponse#creation_time #creation_time} => Time
|
3202
3538
|
#
|
3203
3539
|
# @example Request syntax with placeholder values
|
3204
3540
|
#
|
3205
3541
|
# resp = client.start_read_set_import_job({
|
3206
|
-
# client_token: "ClientToken",
|
3207
|
-
# role_arn: "RoleArn", # required
|
3208
3542
|
# sequence_store_id: "SequenceStoreId", # required
|
3543
|
+
# role_arn: "RoleArn", # required
|
3544
|
+
# client_token: "ClientToken",
|
3209
3545
|
# sources: [ # required
|
3210
3546
|
# {
|
3211
|
-
# description: "ReadSetDescription",
|
3212
|
-
# generated_from: "GeneratedFrom",
|
3213
|
-
# name: "ReadSetName",
|
3214
|
-
# reference_arn: "ReferenceArn", # required
|
3215
|
-
# sample_id: "SampleId", # required
|
3216
|
-
# source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
|
3217
3547
|
# source_files: { # required
|
3218
3548
|
# source1: "S3Uri", # required
|
3219
3549
|
# source2: "S3Uri",
|
3220
3550
|
# },
|
3551
|
+
# source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
|
3221
3552
|
# subject_id: "SubjectId", # required
|
3553
|
+
# sample_id: "SampleId", # required
|
3554
|
+
# generated_from: "GeneratedFrom",
|
3555
|
+
# reference_arn: "ReferenceArn", # required
|
3556
|
+
# name: "ReadSetName",
|
3557
|
+
# description: "ReadSetDescription",
|
3222
3558
|
# tags: {
|
3223
3559
|
# "TagKey" => "TagValue",
|
3224
3560
|
# },
|
@@ -3228,11 +3564,11 @@ module Aws::Omics
|
|
3228
3564
|
#
|
3229
3565
|
# @example Response structure
|
3230
3566
|
#
|
3231
|
-
# resp.creation_time #=> Time
|
3232
3567
|
# resp.id #=> String
|
3233
|
-
# resp.role_arn #=> String
|
3234
3568
|
# resp.sequence_store_id #=> String
|
3569
|
+
# resp.role_arn #=> String
|
3235
3570
|
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
3571
|
+
# resp.creation_time #=> Time
|
3236
3572
|
#
|
3237
3573
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetImportJob AWS API Documentation
|
3238
3574
|
#
|
@@ -3245,38 +3581,38 @@ module Aws::Omics
|
|
3245
3581
|
|
3246
3582
|
# Starts a reference import job.
|
3247
3583
|
#
|
3248
|
-
# @option params [String] :client_token
|
3249
|
-
# To ensure that jobs don't run multiple times, specify a unique token
|
3250
|
-
# for each job.
|
3251
|
-
#
|
3252
3584
|
# @option params [required, String] :reference_store_id
|
3253
3585
|
# The job's reference store ID.
|
3254
3586
|
#
|
3255
3587
|
# @option params [required, String] :role_arn
|
3256
3588
|
# A service role for the job.
|
3257
3589
|
#
|
3590
|
+
# @option params [String] :client_token
|
3591
|
+
# To ensure that jobs don't run multiple times, specify a unique token
|
3592
|
+
# for each job.
|
3593
|
+
#
|
3258
3594
|
# @option params [required, Array<Types::StartReferenceImportJobSourceItem>] :sources
|
3259
3595
|
# The job's source files.
|
3260
3596
|
#
|
3261
3597
|
# @return [Types::StartReferenceImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3262
3598
|
#
|
3263
|
-
# * {Types::StartReferenceImportJobResponse#creation_time #creation_time} => Time
|
3264
3599
|
# * {Types::StartReferenceImportJobResponse#id #id} => String
|
3265
3600
|
# * {Types::StartReferenceImportJobResponse#reference_store_id #reference_store_id} => String
|
3266
3601
|
# * {Types::StartReferenceImportJobResponse#role_arn #role_arn} => String
|
3267
3602
|
# * {Types::StartReferenceImportJobResponse#status #status} => String
|
3603
|
+
# * {Types::StartReferenceImportJobResponse#creation_time #creation_time} => Time
|
3268
3604
|
#
|
3269
3605
|
# @example Request syntax with placeholder values
|
3270
3606
|
#
|
3271
3607
|
# resp = client.start_reference_import_job({
|
3272
|
-
# client_token: "ClientToken",
|
3273
3608
|
# reference_store_id: "ReferenceStoreId", # required
|
3274
3609
|
# role_arn: "RoleArn", # required
|
3610
|
+
# client_token: "ClientToken",
|
3275
3611
|
# sources: [ # required
|
3276
3612
|
# {
|
3277
|
-
# description: "ReferenceDescription",
|
3278
|
-
# name: "ReferenceName", # required
|
3279
3613
|
# source_file: "S3Uri", # required
|
3614
|
+
# name: "ReferenceName", # required
|
3615
|
+
# description: "ReferenceDescription",
|
3280
3616
|
# tags: {
|
3281
3617
|
# "TagKey" => "TagValue",
|
3282
3618
|
# },
|
@@ -3286,11 +3622,11 @@ module Aws::Omics
|
|
3286
3622
|
#
|
3287
3623
|
# @example Response structure
|
3288
3624
|
#
|
3289
|
-
# resp.creation_time #=> Time
|
3290
3625
|
# resp.id #=> String
|
3291
3626
|
# resp.reference_store_id #=> String
|
3292
3627
|
# resp.role_arn #=> String
|
3293
3628
|
# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
|
3629
|
+
# resp.creation_time #=> Time
|
3294
3630
|
#
|
3295
3631
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReferenceImportJob AWS API Documentation
|
3296
3632
|
#
|
@@ -3303,14 +3639,26 @@ module Aws::Omics
|
|
3303
3639
|
|
3304
3640
|
# Starts a run.
|
3305
3641
|
#
|
3306
|
-
# @option params [String] :
|
3307
|
-
#
|
3642
|
+
# @option params [String] :workflow_id
|
3643
|
+
# The run's workflow ID.
|
3644
|
+
#
|
3645
|
+
# @option params [String] :workflow_type
|
3646
|
+
# The run's workflows type.
|
3647
|
+
#
|
3648
|
+
# @option params [String] :run_id
|
3649
|
+
# The run's ID.
|
3650
|
+
#
|
3651
|
+
# @option params [required, String] :role_arn
|
3652
|
+
# A service role for the run.
|
3308
3653
|
#
|
3309
3654
|
# @option params [String] :name
|
3310
3655
|
# A name for the run.
|
3311
3656
|
#
|
3312
|
-
# @option params [String] :
|
3313
|
-
#
|
3657
|
+
# @option params [String] :run_group_id
|
3658
|
+
# The run's group ID.
|
3659
|
+
#
|
3660
|
+
# @option params [Integer] :priority
|
3661
|
+
# A priority for the run.
|
3314
3662
|
#
|
3315
3663
|
# @option params [Hash,Array,String,Numeric,Boolean] :parameters
|
3316
3664
|
# Parameters for the run.
|
@@ -3320,36 +3668,24 @@ module Aws::Omics
|
|
3320
3668
|
# serialized using the same format as its surroundings and requires no
|
3321
3669
|
# additional encoding or escaping.
|
3322
3670
|
#
|
3323
|
-
# @option params [Integer] :priority
|
3324
|
-
# A priority for the run.
|
3325
|
-
#
|
3326
|
-
# @option params [required, String] :request_id
|
3327
|
-
# To ensure that requests don't run multiple times, specify a unique ID
|
3328
|
-
# for each request.
|
3329
|
-
#
|
3330
|
-
# **A suitable default value is auto-generated.** You should normally
|
3331
|
-
# not need to pass this option.**
|
3332
|
-
#
|
3333
|
-
# @option params [required, String] :role_arn
|
3334
|
-
# A service role for the run.
|
3335
|
-
#
|
3336
|
-
# @option params [String] :run_group_id
|
3337
|
-
# The run's group ID.
|
3338
|
-
#
|
3339
|
-
# @option params [String] :run_id
|
3340
|
-
# The run's ID.
|
3341
|
-
#
|
3342
3671
|
# @option params [Integer] :storage_capacity
|
3343
3672
|
# A storage capacity for the run in gigabytes.
|
3344
3673
|
#
|
3674
|
+
# @option params [String] :output_uri
|
3675
|
+
# An output URI for the run.
|
3676
|
+
#
|
3677
|
+
# @option params [String] :log_level
|
3678
|
+
# A log level for the run.
|
3679
|
+
#
|
3345
3680
|
# @option params [Hash<String,String>] :tags
|
3346
3681
|
# Tags for the run.
|
3347
3682
|
#
|
3348
|
-
# @option params [String] :
|
3349
|
-
#
|
3683
|
+
# @option params [required, String] :request_id
|
3684
|
+
# To ensure that requests don't run multiple times, specify a unique ID
|
3685
|
+
# for each request.
|
3350
3686
|
#
|
3351
|
-
#
|
3352
|
-
#
|
3687
|
+
# **A suitable default value is auto-generated.** You should normally
|
3688
|
+
# not need to pass this option.**
|
3353
3689
|
#
|
3354
3690
|
# @return [Types::StartRunResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3355
3691
|
#
|
@@ -3361,22 +3697,22 @@ module Aws::Omics
|
|
3361
3697
|
# @example Request syntax with placeholder values
|
3362
3698
|
#
|
3363
3699
|
# resp = client.start_run({
|
3364
|
-
#
|
3700
|
+
# workflow_id: "WorkflowId",
|
3701
|
+
# workflow_type: "PRIVATE", # accepts PRIVATE, READY2RUN
|
3702
|
+
# run_id: "RunId",
|
3703
|
+
# role_arn: "RunRoleArn", # required
|
3365
3704
|
# name: "RunName",
|
3366
|
-
#
|
3705
|
+
# run_group_id: "RunGroupId",
|
3706
|
+
# priority: 1,
|
3367
3707
|
# parameters: {
|
3368
3708
|
# },
|
3369
|
-
# priority: 1,
|
3370
|
-
# request_id: "RunRequestId", # required
|
3371
|
-
# role_arn: "RunRoleArn", # required
|
3372
|
-
# run_group_id: "RunGroupId",
|
3373
|
-
# run_id: "RunId",
|
3374
3709
|
# storage_capacity: 1,
|
3710
|
+
# output_uri: "RunOutputUri",
|
3711
|
+
# log_level: "OFF", # accepts OFF, FATAL, ERROR, ALL
|
3375
3712
|
# tags: {
|
3376
3713
|
# "TagKey" => "TagValue",
|
3377
3714
|
# },
|
3378
|
-
#
|
3379
|
-
# workflow_type: "PRIVATE", # accepts PRIVATE
|
3715
|
+
# request_id: "RunRequestId", # required
|
3380
3716
|
# })
|
3381
3717
|
#
|
3382
3718
|
# @example Response structure
|
@@ -3401,15 +3737,18 @@ module Aws::Omics
|
|
3401
3737
|
# @option params [required, String] :destination_name
|
3402
3738
|
# The destination variant store for the job.
|
3403
3739
|
#
|
3404
|
-
# @option params [required, Array<Types::VariantImportItemSource>] :items
|
3405
|
-
# Items to import.
|
3406
|
-
#
|
3407
3740
|
# @option params [required, String] :role_arn
|
3408
3741
|
# A service role for the job.
|
3409
3742
|
#
|
3743
|
+
# @option params [required, Array<Types::VariantImportItemSource>] :items
|
3744
|
+
# Items to import.
|
3745
|
+
#
|
3410
3746
|
# @option params [Boolean] :run_left_normalization
|
3411
3747
|
# The job's left normalization setting.
|
3412
3748
|
#
|
3749
|
+
# @option params [Hash<String,String>] :annotation_fields
|
3750
|
+
# The annotation schema generated by the parsed annotation data.
|
3751
|
+
#
|
3413
3752
|
# @return [Types::StartVariantImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3414
3753
|
#
|
3415
3754
|
# * {Types::StartVariantImportResponse#job_id #job_id} => String
|
@@ -3418,13 +3757,16 @@ module Aws::Omics
|
|
3418
3757
|
#
|
3419
3758
|
# resp = client.start_variant_import_job({
|
3420
3759
|
# destination_name: "StoreName", # required
|
3760
|
+
# role_arn: "Arn", # required
|
3421
3761
|
# items: [ # required
|
3422
3762
|
# {
|
3423
3763
|
# source: "S3Uri", # required
|
3424
3764
|
# },
|
3425
3765
|
# ],
|
3426
|
-
# role_arn: "Arn", # required
|
3427
3766
|
# run_left_normalization: false,
|
3767
|
+
# annotation_fields: {
|
3768
|
+
# "AnnotationFieldMapKeyString" => "AnnotationFieldMapValueString",
|
3769
|
+
# },
|
3428
3770
|
# })
|
3429
3771
|
#
|
3430
3772
|
# @example Response structure
|
@@ -3496,47 +3838,47 @@ module Aws::Omics
|
|
3496
3838
|
|
3497
3839
|
# Updates an annotation store.
|
3498
3840
|
#
|
3499
|
-
# @option params [String] :description
|
3500
|
-
# A description for the store.
|
3501
|
-
#
|
3502
3841
|
# @option params [required, String] :name
|
3503
3842
|
# A name for the store.
|
3504
3843
|
#
|
3844
|
+
# @option params [String] :description
|
3845
|
+
# A description for the store.
|
3846
|
+
#
|
3505
3847
|
# @return [Types::UpdateAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3506
3848
|
#
|
3507
|
-
# * {Types::UpdateAnnotationStoreResponse#creation_time #creation_time} => Time
|
3508
|
-
# * {Types::UpdateAnnotationStoreResponse#description #description} => String
|
3509
3849
|
# * {Types::UpdateAnnotationStoreResponse#id #id} => String
|
3510
|
-
# * {Types::UpdateAnnotationStoreResponse#name #name} => String
|
3511
3850
|
# * {Types::UpdateAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
|
3512
3851
|
# * {Types::UpdateAnnotationStoreResponse#status #status} => String
|
3513
|
-
# * {Types::UpdateAnnotationStoreResponse#
|
3514
|
-
# * {Types::UpdateAnnotationStoreResponse#
|
3852
|
+
# * {Types::UpdateAnnotationStoreResponse#name #name} => String
|
3853
|
+
# * {Types::UpdateAnnotationStoreResponse#description #description} => String
|
3854
|
+
# * {Types::UpdateAnnotationStoreResponse#creation_time #creation_time} => Time
|
3515
3855
|
# * {Types::UpdateAnnotationStoreResponse#update_time #update_time} => Time
|
3856
|
+
# * {Types::UpdateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
|
3857
|
+
# * {Types::UpdateAnnotationStoreResponse#store_format #store_format} => String
|
3516
3858
|
#
|
3517
3859
|
# @example Request syntax with placeholder values
|
3518
3860
|
#
|
3519
3861
|
# resp = client.update_annotation_store({
|
3520
|
-
# description: "StoreDescription",
|
3521
3862
|
# name: "String", # required
|
3863
|
+
# description: "StoreDescription",
|
3522
3864
|
# })
|
3523
3865
|
#
|
3524
3866
|
# @example Response structure
|
3525
3867
|
#
|
3526
|
-
# resp.creation_time #=> Time
|
3527
|
-
# resp.description #=> String
|
3528
3868
|
# resp.id #=> String
|
3529
|
-
# resp.name #=> String
|
3530
3869
|
# resp.reference.reference_arn #=> String
|
3531
3870
|
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
3532
|
-
# resp.
|
3871
|
+
# resp.name #=> String
|
3872
|
+
# resp.description #=> String
|
3873
|
+
# resp.creation_time #=> Time
|
3874
|
+
# resp.update_time #=> Time
|
3533
3875
|
# resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
|
3534
3876
|
# resp.store_options.tsv_store_options.format_to_header #=> Hash
|
3535
3877
|
# resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
|
3536
3878
|
# resp.store_options.tsv_store_options.schema #=> Array
|
3537
3879
|
# resp.store_options.tsv_store_options.schema[0] #=> Hash
|
3538
3880
|
# resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
|
3539
|
-
# resp.
|
3881
|
+
# resp.store_format #=> String, one of "GFF", "TSV", "VCF"
|
3540
3882
|
#
|
3541
3883
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateAnnotationStore AWS API Documentation
|
3542
3884
|
#
|
@@ -3552,17 +3894,20 @@ module Aws::Omics
|
|
3552
3894
|
# @option params [required, String] :id
|
3553
3895
|
# The group's ID.
|
3554
3896
|
#
|
3897
|
+
# @option params [String] :name
|
3898
|
+
# A name for the group.
|
3899
|
+
#
|
3555
3900
|
# @option params [Integer] :max_cpus
|
3556
3901
|
# The maximum number of CPUs to use.
|
3557
3902
|
#
|
3558
|
-
# @option params [Integer] :max_duration
|
3559
|
-
# A maximum run time for the group in minutes.
|
3560
|
-
#
|
3561
3903
|
# @option params [Integer] :max_runs
|
3562
3904
|
# The maximum number of concurrent runs for the group.
|
3563
3905
|
#
|
3564
|
-
# @option params [
|
3565
|
-
# A
|
3906
|
+
# @option params [Integer] :max_duration
|
3907
|
+
# A maximum run time for the group in minutes.
|
3908
|
+
#
|
3909
|
+
# @option params [Integer] :max_gpus
|
3910
|
+
# The maximum GPUs that can be used by a run group.
|
3566
3911
|
#
|
3567
3912
|
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
3568
3913
|
#
|
@@ -3570,10 +3915,11 @@ module Aws::Omics
|
|
3570
3915
|
#
|
3571
3916
|
# resp = client.update_run_group({
|
3572
3917
|
# id: "RunGroupId", # required
|
3918
|
+
# name: "RunGroupName",
|
3573
3919
|
# max_cpus: 1,
|
3574
|
-
# max_duration: 1,
|
3575
3920
|
# max_runs: 1,
|
3576
|
-
#
|
3921
|
+
# max_duration: 1,
|
3922
|
+
# max_gpus: 1,
|
3577
3923
|
# })
|
3578
3924
|
#
|
3579
3925
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateRunGroup AWS API Documentation
|
@@ -3587,37 +3933,37 @@ module Aws::Omics
|
|
3587
3933
|
|
3588
3934
|
# Updates a variant store.
|
3589
3935
|
#
|
3590
|
-
# @option params [String] :description
|
3591
|
-
# A description for the store.
|
3592
|
-
#
|
3593
3936
|
# @option params [required, String] :name
|
3594
3937
|
# A name for the store.
|
3595
3938
|
#
|
3939
|
+
# @option params [String] :description
|
3940
|
+
# A description for the store.
|
3941
|
+
#
|
3596
3942
|
# @return [Types::UpdateVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3597
3943
|
#
|
3598
|
-
# * {Types::UpdateVariantStoreResponse#creation_time #creation_time} => Time
|
3599
|
-
# * {Types::UpdateVariantStoreResponse#description #description} => String
|
3600
3944
|
# * {Types::UpdateVariantStoreResponse#id #id} => String
|
3601
|
-
# * {Types::UpdateVariantStoreResponse#name #name} => String
|
3602
3945
|
# * {Types::UpdateVariantStoreResponse#reference #reference} => Types::ReferenceItem
|
3603
3946
|
# * {Types::UpdateVariantStoreResponse#status #status} => String
|
3947
|
+
# * {Types::UpdateVariantStoreResponse#name #name} => String
|
3948
|
+
# * {Types::UpdateVariantStoreResponse#description #description} => String
|
3949
|
+
# * {Types::UpdateVariantStoreResponse#creation_time #creation_time} => Time
|
3604
3950
|
# * {Types::UpdateVariantStoreResponse#update_time #update_time} => Time
|
3605
3951
|
#
|
3606
3952
|
# @example Request syntax with placeholder values
|
3607
3953
|
#
|
3608
3954
|
# resp = client.update_variant_store({
|
3609
|
-
# description: "StoreDescription",
|
3610
3955
|
# name: "String", # required
|
3956
|
+
# description: "StoreDescription",
|
3611
3957
|
# })
|
3612
3958
|
#
|
3613
3959
|
# @example Response structure
|
3614
3960
|
#
|
3615
|
-
# resp.creation_time #=> Time
|
3616
|
-
# resp.description #=> String
|
3617
3961
|
# resp.id #=> String
|
3618
|
-
# resp.name #=> String
|
3619
3962
|
# resp.reference.reference_arn #=> String
|
3620
3963
|
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
3964
|
+
# resp.name #=> String
|
3965
|
+
# resp.description #=> String
|
3966
|
+
# resp.creation_time #=> Time
|
3621
3967
|
# resp.update_time #=> Time
|
3622
3968
|
#
|
3623
3969
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateVariantStore AWS API Documentation
|
@@ -3631,23 +3977,23 @@ module Aws::Omics
|
|
3631
3977
|
|
3632
3978
|
# Updates a workflow.
|
3633
3979
|
#
|
3634
|
-
# @option params [String] :description
|
3635
|
-
# A description for the workflow.
|
3636
|
-
#
|
3637
3980
|
# @option params [required, String] :id
|
3638
3981
|
# The workflow's ID.
|
3639
3982
|
#
|
3640
3983
|
# @option params [String] :name
|
3641
3984
|
# A name for the workflow.
|
3642
3985
|
#
|
3986
|
+
# @option params [String] :description
|
3987
|
+
# A description for the workflow.
|
3988
|
+
#
|
3643
3989
|
# @return [Struct] Returns an empty {Seahorse::Client::Response response}.
|
3644
3990
|
#
|
3645
3991
|
# @example Request syntax with placeholder values
|
3646
3992
|
#
|
3647
3993
|
# resp = client.update_workflow({
|
3648
|
-
# description: "WorkflowDescription",
|
3649
3994
|
# id: "WorkflowId", # required
|
3650
3995
|
# name: "WorkflowName",
|
3996
|
+
# description: "WorkflowDescription",
|
3651
3997
|
# })
|
3652
3998
|
#
|
3653
3999
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateWorkflow AWS API Documentation
|
@@ -3659,6 +4005,52 @@ module Aws::Omics
|
|
3659
4005
|
req.send_request(options)
|
3660
4006
|
end
|
3661
4007
|
|
4008
|
+
# This operation uploads a specific part of a read set. If you upload a
|
4009
|
+
# new part using a previously used part number, the previously uploaded
|
4010
|
+
# part will be overwritten.
|
4011
|
+
#
|
4012
|
+
# @option params [required, String] :sequence_store_id
|
4013
|
+
# The Sequence Store ID used for the multipart upload.
|
4014
|
+
#
|
4015
|
+
# @option params [required, String] :upload_id
|
4016
|
+
# The ID for the initiated multipart upload.
|
4017
|
+
#
|
4018
|
+
# @option params [required, String] :part_source
|
4019
|
+
# The source file for an upload part.
|
4020
|
+
#
|
4021
|
+
# @option params [required, Integer] :part_number
|
4022
|
+
# The number of the part being uploaded.
|
4023
|
+
#
|
4024
|
+
# @option params [required, String, IO] :payload
|
4025
|
+
# The read set data to upload for a part.
|
4026
|
+
#
|
4027
|
+
# @return [Types::UploadReadSetPartResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
4028
|
+
#
|
4029
|
+
# * {Types::UploadReadSetPartResponse#checksum #checksum} => String
|
4030
|
+
#
|
4031
|
+
# @example Request syntax with placeholder values
|
4032
|
+
#
|
4033
|
+
# resp = client.upload_read_set_part({
|
4034
|
+
# sequence_store_id: "SequenceStoreId", # required
|
4035
|
+
# upload_id: "UploadId", # required
|
4036
|
+
# part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2
|
4037
|
+
# part_number: 1, # required
|
4038
|
+
# payload: "data", # required
|
4039
|
+
# })
|
4040
|
+
#
|
4041
|
+
# @example Response structure
|
4042
|
+
#
|
4043
|
+
# resp.checksum #=> String
|
4044
|
+
#
|
4045
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UploadReadSetPart AWS API Documentation
|
4046
|
+
#
|
4047
|
+
# @overload upload_read_set_part(params = {})
|
4048
|
+
# @param [Hash] params ({})
|
4049
|
+
def upload_read_set_part(params = {}, options = {})
|
4050
|
+
req = build_request(:upload_read_set_part, params)
|
4051
|
+
req.send_request(options)
|
4052
|
+
end
|
4053
|
+
|
3662
4054
|
# @!endgroup
|
3663
4055
|
|
3664
4056
|
# @param params ({})
|
@@ -3672,7 +4064,7 @@ module Aws::Omics
|
|
3672
4064
|
params: params,
|
3673
4065
|
config: config)
|
3674
4066
|
context[:gem_name] = 'aws-sdk-omics'
|
3675
|
-
context[:gem_version] = '1.
|
4067
|
+
context[:gem_version] = '1.4.0'
|
3676
4068
|
Seahorse::Client::Request.new(handlers, context)
|
3677
4069
|
end
|
3678
4070
|
|