aws-sdk-omics 1.3.0 → 1.4.0

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@@ -368,6 +368,32 @@ module Aws::Omics
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  # @!group API Operations
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+ # Stops a multipart upload.
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+ #
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+ # @option params [required, String] :sequence_store_id
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+ # The sequence store ID for the store involved in the multipart upload.
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+ #
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+ # @option params [required, String] :upload_id
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+ # The ID for the multipart upload.
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+ #
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+ # @return [Struct] Returns an empty {Seahorse::Client::Response response}.
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+ #
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+ # @example Request syntax with placeholder values
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+ #
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+ # resp = client.abort_multipart_read_set_upload({
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+ # sequence_store_id: "SequenceStoreId", # required
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+ # upload_id: "UploadId", # required
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+ # })
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+ #
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+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/AbortMultipartReadSetUpload AWS API Documentation
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+ #
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+ # @overload abort_multipart_read_set_upload(params = {})
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+ # @param [Hash] params ({})
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+ def abort_multipart_read_set_upload(params = {}, options = {})
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+ req = build_request(:abort_multipart_read_set_upload, params)
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+ req.send_request(options)
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+ end
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+
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  # Deletes one or more read sets.
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  #
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  # @option params [required, Array<String>] :ids
@@ -390,8 +416,8 @@ module Aws::Omics
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  # @example Response structure
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  #
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  # resp.errors #=> Array
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- # resp.errors[0].code #=> String
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  # resp.errors[0].id #=> String
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+ # resp.errors[0].code #=> String
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  # resp.errors[0].message #=> String
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  #
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  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/BatchDeleteReadSet AWS API Documentation
@@ -469,16 +495,62 @@ module Aws::Omics
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  req.send_request(options)
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  end
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+ # Concludes a multipart upload once you have uploaded all the
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+ # components.
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+ #
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+ # @option params [required, String] :sequence_store_id
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+ # The sequence store ID for the store involved in the multipart upload.
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+ #
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+ # @option params [required, String] :upload_id
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+ # The ID for the multipart upload.
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+ #
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+ # @option params [required, Array<Types::CompleteReadSetUploadPartListItem>] :parts
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+ # The individual uploads or parts of a multipart upload.
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+ #
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+ # @return [Types::CompleteMultipartReadSetUploadResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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+ #
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+ # * {Types::CompleteMultipartReadSetUploadResponse#read_set_id #read_set_id} => String
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+ #
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+ # @example Request syntax with placeholder values
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+ #
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+ # resp = client.complete_multipart_read_set_upload({
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+ # sequence_store_id: "SequenceStoreId", # required
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+ # upload_id: "UploadId", # required
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+ # parts: [ # required
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+ # {
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+ # part_number: 1, # required
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+ # part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2
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+ # checksum: "String", # required
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+ # },
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+ # ],
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+ # })
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+ #
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+ # @example Response structure
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+ #
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+ # resp.read_set_id #=> String
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+ #
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+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CompleteMultipartReadSetUpload AWS API Documentation
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+ #
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+ # @overload complete_multipart_read_set_upload(params = {})
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+ # @param [Hash] params ({})
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+ def complete_multipart_read_set_upload(params = {}, options = {})
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+ req = build_request(:complete_multipart_read_set_upload, params)
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+ req.send_request(options)
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+ end
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+
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  # Creates an annotation store.
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  #
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- # @option params [String] :description
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- # A description for the store.
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+ # @option params [Types::ReferenceItem] :reference
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+ # The genome reference for the store's annotations.
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  #
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  # @option params [String] :name
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  # A name for the store.
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  #
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- # @option params [Types::ReferenceItem] :reference
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- # The genome reference for the store's annotations.
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+ # @option params [String] :description
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+ # A description for the store.
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+ #
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+ # @option params [Hash<String,String>] :tags
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+ # Tags for the store.
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  #
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  # @option params [Types::SseConfig] :sse_config
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  # Server-side encryption (SSE) settings for the store.
@@ -489,30 +561,30 @@ module Aws::Omics
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  # @option params [Types::StoreOptions] :store_options
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  # File parsing options for the annotation store.
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  #
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- # @option params [Hash<String,String>] :tags
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- # Tags for the store.
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- #
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  # @return [Types::CreateAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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  #
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- # * {Types::CreateAnnotationStoreResponse#creation_time #creation_time} => Time
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  # * {Types::CreateAnnotationStoreResponse#id #id} => String
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- # * {Types::CreateAnnotationStoreResponse#name #name} => String
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  # * {Types::CreateAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
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- # * {Types::CreateAnnotationStoreResponse#status #status} => String
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  # * {Types::CreateAnnotationStoreResponse#store_format #store_format} => String
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  # * {Types::CreateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
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+ # * {Types::CreateAnnotationStoreResponse#status #status} => String
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+ # * {Types::CreateAnnotationStoreResponse#name #name} => String
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+ # * {Types::CreateAnnotationStoreResponse#creation_time #creation_time} => Time
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  #
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  # @example Request syntax with placeholder values
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  #
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  # resp = client.create_annotation_store({
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- # description: "StoreDescription",
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- # name: "CreateAnnotationStoreRequestNameString",
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  # reference: {
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  # reference_arn: "ReferenceArn",
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  # },
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+ # name: "CreateAnnotationStoreRequestNameString",
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+ # description: "StoreDescription",
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+ # tags: {
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+ # "TagKey" => "TagValue",
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+ # },
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  # sse_config: {
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- # key_arn: "SseConfigKeyArnString",
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  # type: "KMS", # required, accepts KMS
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+ # key_arn: "SseConfigKeyArnString",
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  # },
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  # store_format: "GFF", # required, accepts GFF, TSV, VCF
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  # store_options: {
@@ -528,18 +600,12 @@ module Aws::Omics
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  # ],
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  # },
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  # },
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- # tags: {
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- # "TagKey" => "TagValue",
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- # },
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  # })
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  #
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  # @example Response structure
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  #
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- # resp.creation_time #=> Time
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  # resp.id #=> String
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- # resp.name #=> String
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  # resp.reference.reference_arn #=> String
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- # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
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  # resp.store_format #=> String, one of "GFF", "TSV", "VCF"
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  # resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
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  # resp.store_options.tsv_store_options.format_to_header #=> Hash
@@ -547,6 +613,9 @@ module Aws::Omics
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  # resp.store_options.tsv_store_options.schema #=> Array
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  # resp.store_options.tsv_store_options.schema[0] #=> Hash
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  # resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
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+ # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
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+ # resp.name #=> String
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+ # resp.creation_time #=> Time
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  #
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  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateAnnotationStore AWS API Documentation
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  #
@@ -557,57 +626,146 @@ module Aws::Omics
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  req.send_request(options)
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  end
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- # Creates a reference store.
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+ # Begins a multipart read set upload.
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+ #
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+ # @option params [required, String] :sequence_store_id
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+ # The sequence store ID for the store that is the destination of the
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+ # multipart uploads.
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  #
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  # @option params [String] :client_token
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- # To ensure that requests don't run multiple times, specify a unique
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- # token for each request.
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+ # An idempotency token that can be used to avoid triggering multiple
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+ # multipart uploads.
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+ #
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+ # @option params [required, String] :source_file_type
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+ # The type of file being uploaded.
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+ #
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+ # @option params [required, String] :subject_id
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+ # The source's subject ID.
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+ #
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+ # @option params [required, String] :sample_id
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+ # The source's sample ID.
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+ #
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+ # @option params [String] :generated_from
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+ # Where the source originated.
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+ #
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+ # @option params [required, String] :reference_arn
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+ # The ARN of the reference.
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+ #
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+ # @option params [required, String] :name
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+ # The name of the read set.
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  #
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  # @option params [String] :description
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- # A description for the store.
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+ # The description of the read set.
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+ #
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+ # @option params [Hash<String,String>] :tags
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+ # Any tags to add to the read set.
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+ #
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+ # @return [Types::CreateMultipartReadSetUploadResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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+ #
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+ # * {Types::CreateMultipartReadSetUploadResponse#sequence_store_id #sequence_store_id} => String
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+ # * {Types::CreateMultipartReadSetUploadResponse#upload_id #upload_id} => String
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+ # * {Types::CreateMultipartReadSetUploadResponse#source_file_type #source_file_type} => String
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+ # * {Types::CreateMultipartReadSetUploadResponse#subject_id #subject_id} => String
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+ # * {Types::CreateMultipartReadSetUploadResponse#sample_id #sample_id} => String
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+ # * {Types::CreateMultipartReadSetUploadResponse#generated_from #generated_from} => String
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+ # * {Types::CreateMultipartReadSetUploadResponse#reference_arn #reference_arn} => String
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+ # * {Types::CreateMultipartReadSetUploadResponse#name #name} => String
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+ # * {Types::CreateMultipartReadSetUploadResponse#description #description} => String
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+ # * {Types::CreateMultipartReadSetUploadResponse#tags #tags} => Hash&lt;String,String&gt;
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+ # * {Types::CreateMultipartReadSetUploadResponse#creation_time #creation_time} => Time
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+ #
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+ # @example Request syntax with placeholder values
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+ #
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+ # resp = client.create_multipart_read_set_upload({
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+ # sequence_store_id: "SequenceStoreId", # required
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+ # client_token: "ClientToken",
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+ # source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
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+ # subject_id: "SubjectId", # required
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+ # sample_id: "SampleId", # required
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+ # generated_from: "GeneratedFrom",
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+ # reference_arn: "ReferenceArn", # required
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+ # name: "ReadSetName", # required
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+ # description: "ReadSetDescription",
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+ # tags: {
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+ # "TagKey" => "TagValue",
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+ # },
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+ # })
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+ #
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+ # @example Response structure
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+ #
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+ # resp.sequence_store_id #=> String
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+ # resp.upload_id #=> String
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+ # resp.source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
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+ # resp.subject_id #=> String
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+ # resp.sample_id #=> String
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+ # resp.generated_from #=> String
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+ # resp.reference_arn #=> String
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+ # resp.name #=> String
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+ # resp.description #=> String
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+ # resp.tags #=> Hash
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+ # resp.tags["TagKey"] #=> String
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+ # resp.creation_time #=> Time
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+ #
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+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateMultipartReadSetUpload AWS API Documentation
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+ #
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+ # @overload create_multipart_read_set_upload(params = {})
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+ # @param [Hash] params ({})
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+ def create_multipart_read_set_upload(params = {}, options = {})
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+ req = build_request(:create_multipart_read_set_upload, params)
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+ req.send_request(options)
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+ end
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+
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+ # Creates a reference store.
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  #
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  # @option params [required, String] :name
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  # A name for the store.
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  #
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+ # @option params [String] :description
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+ # A description for the store.
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+ #
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  # @option params [Types::SseConfig] :sse_config
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  # Server-side encryption (SSE) settings for the store.
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  #
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  # @option params [Hash<String,String>] :tags
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  # Tags for the store.
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  #
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+ # @option params [String] :client_token
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+ # To ensure that requests don't run multiple times, specify a unique
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+ # token for each request.
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+ #
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  # @return [Types::CreateReferenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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  #
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- # * {Types::CreateReferenceStoreResponse#arn #arn} => String
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- # * {Types::CreateReferenceStoreResponse#creation_time #creation_time} => Time
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- # * {Types::CreateReferenceStoreResponse#description #description} => String
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  # * {Types::CreateReferenceStoreResponse#id #id} => String
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+ # * {Types::CreateReferenceStoreResponse#arn #arn} => String
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  # * {Types::CreateReferenceStoreResponse#name #name} => String
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+ # * {Types::CreateReferenceStoreResponse#description #description} => String
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  # * {Types::CreateReferenceStoreResponse#sse_config #sse_config} => Types::SseConfig
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+ # * {Types::CreateReferenceStoreResponse#creation_time #creation_time} => Time
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  #
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  # @example Request syntax with placeholder values
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  #
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  # resp = client.create_reference_store({
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- # client_token: "ClientToken",
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- # description: "ReferenceStoreDescription",
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  # name: "ReferenceStoreName", # required
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+ # description: "ReferenceStoreDescription",
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  # sse_config: {
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- # key_arn: "SseConfigKeyArnString",
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  # type: "KMS", # required, accepts KMS
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+ # key_arn: "SseConfigKeyArnString",
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  # },
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  # tags: {
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  # "TagKey" => "TagValue",
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  # },
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+ # client_token: "ClientToken",
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  # })
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  #
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  # @example Response structure
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  #
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- # resp.arn #=> String
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- # resp.creation_time #=> Time
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- # resp.description #=> String
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  # resp.id #=> String
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+ # resp.arn #=> String
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  # resp.name #=> String
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- # resp.sse_config.key_arn #=> String
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+ # resp.description #=> String
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  # resp.sse_config.type #=> String, one of "KMS"
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+ # resp.sse_config.key_arn #=> String
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+ # resp.creation_time #=> Time
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  #
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  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateReferenceStore AWS API Documentation
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  #
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  # Creates a run group.
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  #
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+ # @option params [String] :name
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+ # A name for the group.
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+ #
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  # @option params [Integer] :max_cpus
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  # The maximum number of CPUs to use in the group.
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  #
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- # @option params [Integer] :max_duration
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- # A maximum run time for the group in minutes.
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- #
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  # @option params [Integer] :max_runs
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  # The maximum number of concurrent runs for the group.
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  #
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- # @option params [String] :name
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- # A name for the group.
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+ # @option params [Integer] :max_duration
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+ # A maximum run time for the group in minutes.
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+ #
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+ # @option params [Hash<String,String>] :tags
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+ # Tags for the group.
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  #
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  # @option params [required, String] :request_id
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  # To ensure that requests don't run multiple times, specify a unique ID
@@ -639,8 +800,8 @@ module Aws::Omics
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  # **A suitable default value is auto-generated.** You should normally
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  # not need to pass this option.**
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  #
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- # @option params [Hash<String,String>] :tags
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- # Tags for the group.
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+ # @option params [Integer] :max_gpus
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+ # The maximum GPUs that can be used by a run group.
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  #
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  # @return [Types::CreateRunGroupResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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  #
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  # @example Request syntax with placeholder values
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  #
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  # resp = client.create_run_group({
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+ # name: "RunGroupName",
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  # max_cpus: 1,
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- # max_duration: 1,
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  # max_runs: 1,
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- # name: "RunGroupName",
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- # request_id: "RunGroupRequestId", # required
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+ # max_duration: 1,
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  # tags: {
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  # "TagKey" => "TagValue",
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  # },
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+ # request_id: "RunGroupRequestId", # required
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+ # max_gpus: 1,
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  # })
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  #
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  # @example Response structure
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  # Creates a sequence store.
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  #
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- # @option params [String] :client_token
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- # To ensure that requests don't run multiple times, specify a unique
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- # token for each request.
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+ # @option params [required, String] :name
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+ # A name for the store.
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  #
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  # @option params [String] :description
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  # A description for the store.
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  #
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- # @option params [required, String] :name
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- # A name for the store.
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- #
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  # @option params [Types::SseConfig] :sse_config
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  # Server-side encryption (SSE) settings for the store.
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  #
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  # @option params [Hash<String,String>] :tags
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  # Tags for the store.
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  #
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+ # @option params [String] :client_token
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+ # To ensure that requests don't run multiple times, specify a unique
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+ # token for each request.
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+ #
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+ # @option params [String] :fallback_location
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+ # An S3 location that is used to store files that have failed a direct
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+ # upload.
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+ #
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  # @return [Types::CreateSequenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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  #
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- # * {Types::CreateSequenceStoreResponse#arn #arn} => String
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- # * {Types::CreateSequenceStoreResponse#creation_time #creation_time} => Time
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- # * {Types::CreateSequenceStoreResponse#description #description} => String
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  # * {Types::CreateSequenceStoreResponse#id #id} => String
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+ # * {Types::CreateSequenceStoreResponse#arn #arn} => String
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  # * {Types::CreateSequenceStoreResponse#name #name} => String
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+ # * {Types::CreateSequenceStoreResponse#description #description} => String
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  # * {Types::CreateSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig
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+ # * {Types::CreateSequenceStoreResponse#creation_time #creation_time} => Time
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+ # * {Types::CreateSequenceStoreResponse#fallback_location #fallback_location} => String
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  #
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  # @example Request syntax with placeholder values
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  #
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  # resp = client.create_sequence_store({
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- # client_token: "ClientToken",
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- # description: "SequenceStoreDescription",
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  # name: "SequenceStoreName", # required
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+ # description: "SequenceStoreDescription",
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  # sse_config: {
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- # key_arn: "SseConfigKeyArnString",
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  # type: "KMS", # required, accepts KMS
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+ # key_arn: "SseConfigKeyArnString",
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  # },
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  # tags: {
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  # "TagKey" => "TagValue",
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  # },
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+ # client_token: "ClientToken",
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+ # fallback_location: "S3Destination",
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  # })
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  #
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  # @example Response structure
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  #
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- # resp.arn #=> String
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- # resp.creation_time #=> Time
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- # resp.description #=> String
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  # resp.id #=> String
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+ # resp.arn #=> String
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  # resp.name #=> String
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- # resp.sse_config.key_arn #=> String
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+ # resp.description #=> String
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  # resp.sse_config.type #=> String, one of "KMS"
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+ # resp.sse_config.key_arn #=> String
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+ # resp.creation_time #=> Time
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+ # resp.fallback_location #=> String
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  #
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  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateSequenceStore AWS API Documentation
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  #
@@ -740,53 +909,53 @@ module Aws::Omics
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  # Creates a variant store.
742
911
  #
743
- # @option params [String] :description
744
- # A description for the store.
912
+ # @option params [required, Types::ReferenceItem] :reference
913
+ # The genome reference for the store's variants.
745
914
  #
746
915
  # @option params [String] :name
747
916
  # A name for the store.
748
917
  #
749
- # @option params [required, Types::ReferenceItem] :reference
750
- # The genome reference for the store's variants.
751
- #
752
- # @option params [Types::SseConfig] :sse_config
753
- # Server-side encryption (SSE) settings for the store.
918
+ # @option params [String] :description
919
+ # A description for the store.
754
920
  #
755
921
  # @option params [Hash<String,String>] :tags
756
922
  # Tags for the store.
757
923
  #
924
+ # @option params [Types::SseConfig] :sse_config
925
+ # Server-side encryption (SSE) settings for the store.
926
+ #
758
927
  # @return [Types::CreateVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
759
928
  #
760
- # * {Types::CreateVariantStoreResponse#creation_time #creation_time} => Time
761
929
  # * {Types::CreateVariantStoreResponse#id #id} => String
762
- # * {Types::CreateVariantStoreResponse#name #name} => String
763
930
  # * {Types::CreateVariantStoreResponse#reference #reference} => Types::ReferenceItem
764
931
  # * {Types::CreateVariantStoreResponse#status #status} => String
932
+ # * {Types::CreateVariantStoreResponse#name #name} => String
933
+ # * {Types::CreateVariantStoreResponse#creation_time #creation_time} => Time
765
934
  #
766
935
  # @example Request syntax with placeholder values
767
936
  #
768
937
  # resp = client.create_variant_store({
769
- # description: "StoreDescription",
770
- # name: "CreateVariantStoreRequestNameString",
771
938
  # reference: { # required
772
939
  # reference_arn: "ReferenceArn",
773
940
  # },
774
- # sse_config: {
775
- # key_arn: "SseConfigKeyArnString",
776
- # type: "KMS", # required, accepts KMS
777
- # },
941
+ # name: "CreateVariantStoreRequestNameString",
942
+ # description: "StoreDescription",
778
943
  # tags: {
779
944
  # "TagKey" => "TagValue",
780
945
  # },
946
+ # sse_config: {
947
+ # type: "KMS", # required, accepts KMS
948
+ # key_arn: "SseConfigKeyArnString",
949
+ # },
781
950
  # })
782
951
  #
783
952
  # @example Response structure
784
953
  #
785
- # resp.creation_time #=> Time
786
954
  # resp.id #=> String
787
- # resp.name #=> String
788
955
  # resp.reference.reference_arn #=> String
789
956
  # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
957
+ # resp.name #=> String
958
+ # resp.creation_time #=> Time
790
959
  #
791
960
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateVariantStore AWS API Documentation
792
961
  #
@@ -799,11 +968,8 @@ module Aws::Omics
799
968
 
800
969
  # Creates a workflow.
801
970
  #
802
- # @option params [String] :definition_uri
803
- # The URI of a definition for the workflow.
804
- #
805
- # @option params [String, StringIO, File] :definition_zip
806
- # A ZIP archive for the workflow.
971
+ # @option params [String] :name
972
+ # A name for the workflow.
807
973
  #
808
974
  # @option params [String] :description
809
975
  # A description for the workflow.
@@ -811,28 +977,34 @@ module Aws::Omics
811
977
  # @option params [String] :engine
812
978
  # An engine for the workflow.
813
979
  #
980
+ # @option params [String, StringIO, File] :definition_zip
981
+ # A ZIP archive for the workflow.
982
+ #
983
+ # @option params [String] :definition_uri
984
+ # The URI of a definition for the workflow.
985
+ #
814
986
  # @option params [String] :main
815
987
  # The path of the main definition file for the workflow.
816
988
  #
817
- # @option params [String] :name
818
- # A name for the workflow.
819
- #
820
989
  # @option params [Hash<String,Types::WorkflowParameter>] :parameter_template
821
990
  # A parameter template for the workflow.
822
991
  #
823
- # @option params [required, String] :request_id
824
- # To ensure that requests don't run multiple times, specify a unique ID
825
- # for each request.
826
- #
827
- # **A suitable default value is auto-generated.** You should normally
828
- # not need to pass this option.**
829
- #
830
992
  # @option params [Integer] :storage_capacity
831
993
  # A storage capacity for the workflow in gigabytes.
832
994
  #
833
995
  # @option params [Hash<String,String>] :tags
834
996
  # Tags for the workflow.
835
997
  #
998
+ # @option params [required, String] :request_id
999
+ # To ensure that requests don't run multiple times, specify a unique ID
1000
+ # for each request.
1001
+ #
1002
+ # **A suitable default value is auto-generated.** You should normally
1003
+ # not need to pass this option.**
1004
+ #
1005
+ # @option params [String] :accelerators
1006
+ # The computational accelerator specified to run the workflow.
1007
+ #
836
1008
  # @return [Types::CreateWorkflowResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
837
1009
  #
838
1010
  # * {Types::CreateWorkflowResponse#arn #arn} => String
@@ -843,30 +1015,31 @@ module Aws::Omics
843
1015
  # @example Request syntax with placeholder values
844
1016
  #
845
1017
  # resp = client.create_workflow({
846
- # definition_uri: "WorkflowDefinition",
847
- # definition_zip: "data",
1018
+ # name: "WorkflowName",
848
1019
  # description: "WorkflowDescription",
849
1020
  # engine: "WDL", # accepts WDL, NEXTFLOW
1021
+ # definition_zip: "data",
1022
+ # definition_uri: "WorkflowDefinition",
850
1023
  # main: "WorkflowMain",
851
- # name: "WorkflowName",
852
1024
  # parameter_template: {
853
1025
  # "WorkflowParameterName" => {
854
1026
  # description: "WorkflowParameterDescription",
855
1027
  # optional: false,
856
1028
  # },
857
1029
  # },
858
- # request_id: "WorkflowRequestId", # required
859
1030
  # storage_capacity: 1,
860
1031
  # tags: {
861
1032
  # "TagKey" => "TagValue",
862
1033
  # },
1034
+ # request_id: "WorkflowRequestId", # required
1035
+ # accelerators: "GPU", # accepts GPU
863
1036
  # })
864
1037
  #
865
1038
  # @example Response structure
866
1039
  #
867
1040
  # resp.arn #=> String
868
1041
  # resp.id #=> String
869
- # resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
1042
+ # resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
870
1043
  # resp.tags #=> Hash
871
1044
  # resp.tags["TagKey"] #=> String
872
1045
  #
@@ -881,12 +1054,12 @@ module Aws::Omics
881
1054
 
882
1055
  # Deletes an annotation store.
883
1056
  #
884
- # @option params [Boolean] :force
885
- # Whether to force deletion.
886
- #
887
1057
  # @option params [required, String] :name
888
1058
  # The store's name.
889
1059
  #
1060
+ # @option params [Boolean] :force
1061
+ # Whether to force deletion.
1062
+ #
890
1063
  # @return [Types::DeleteAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
891
1064
  #
892
1065
  # * {Types::DeleteAnnotationStoreResponse#status #status} => String
@@ -894,8 +1067,8 @@ module Aws::Omics
894
1067
  # @example Request syntax with placeholder values
895
1068
  #
896
1069
  # resp = client.delete_annotation_store({
897
- # force: false,
898
1070
  # name: "String", # required
1071
+ # force: false,
899
1072
  # })
900
1073
  #
901
1074
  # @example Response structure
@@ -1027,12 +1200,12 @@ module Aws::Omics
1027
1200
 
1028
1201
  # Deletes a variant store.
1029
1202
  #
1030
- # @option params [Boolean] :force
1031
- # Whether to force deletion.
1032
- #
1033
1203
  # @option params [required, String] :name
1034
1204
  # The store's name.
1035
1205
  #
1206
+ # @option params [Boolean] :force
1207
+ # Whether to force deletion.
1208
+ #
1036
1209
  # @return [Types::DeleteVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1037
1210
  #
1038
1211
  # * {Types::DeleteVariantStoreResponse#status #status} => String
@@ -1040,8 +1213,8 @@ module Aws::Omics
1040
1213
  # @example Request syntax with placeholder values
1041
1214
  #
1042
1215
  # resp = client.delete_variant_store({
1043
- # force: false,
1044
1216
  # name: "String", # required
1217
+ # force: false,
1045
1218
  # })
1046
1219
  #
1047
1220
  # @example Response structure
@@ -1086,17 +1259,18 @@ module Aws::Omics
1086
1259
  #
1087
1260
  # @return [Types::GetAnnotationImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1088
1261
  #
1089
- # * {Types::GetAnnotationImportResponse#completion_time #completion_time} => Time
1090
- # * {Types::GetAnnotationImportResponse#creation_time #creation_time} => Time
1091
- # * {Types::GetAnnotationImportResponse#destination_name #destination_name} => String
1092
- # * {Types::GetAnnotationImportResponse#format_options #format_options} => Types::FormatOptions
1093
1262
  # * {Types::GetAnnotationImportResponse#id #id} => String
1094
- # * {Types::GetAnnotationImportResponse#items #items} => Array&lt;Types::AnnotationImportItemDetail&gt;
1263
+ # * {Types::GetAnnotationImportResponse#destination_name #destination_name} => String
1095
1264
  # * {Types::GetAnnotationImportResponse#role_arn #role_arn} => String
1096
- # * {Types::GetAnnotationImportResponse#run_left_normalization #run_left_normalization} => Boolean
1097
1265
  # * {Types::GetAnnotationImportResponse#status #status} => String
1098
1266
  # * {Types::GetAnnotationImportResponse#status_message #status_message} => String
1267
+ # * {Types::GetAnnotationImportResponse#creation_time #creation_time} => Time
1099
1268
  # * {Types::GetAnnotationImportResponse#update_time #update_time} => Time
1269
+ # * {Types::GetAnnotationImportResponse#completion_time #completion_time} => Time
1270
+ # * {Types::GetAnnotationImportResponse#items #items} => Array&lt;Types::AnnotationImportItemDetail&gt;
1271
+ # * {Types::GetAnnotationImportResponse#run_left_normalization #run_left_normalization} => Boolean
1272
+ # * {Types::GetAnnotationImportResponse#format_options #format_options} => Types::FormatOptions
1273
+ # * {Types::GetAnnotationImportResponse#annotation_fields #annotation_fields} => Hash&lt;String,String&gt;
1100
1274
  #
1101
1275
  # @example Request syntax with placeholder values
1102
1276
  #
@@ -1106,29 +1280,31 @@ module Aws::Omics
1106
1280
  #
1107
1281
  # @example Response structure
1108
1282
  #
1109
- # resp.completion_time #=> Time
1110
- # resp.creation_time #=> Time
1283
+ # resp.id #=> String
1111
1284
  # resp.destination_name #=> String
1112
- # resp.format_options.tsv_options.read_options.comment #=> String
1285
+ # resp.role_arn #=> String
1286
+ # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
1287
+ # resp.status_message #=> String
1288
+ # resp.creation_time #=> Time
1289
+ # resp.update_time #=> Time
1290
+ # resp.completion_time #=> Time
1291
+ # resp.items #=> Array
1292
+ # resp.items[0].source #=> String
1293
+ # resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
1294
+ # resp.run_left_normalization #=> Boolean
1295
+ # resp.format_options.tsv_options.read_options.sep #=> String
1113
1296
  # resp.format_options.tsv_options.read_options.encoding #=> String
1297
+ # resp.format_options.tsv_options.read_options.quote #=> String
1298
+ # resp.format_options.tsv_options.read_options.quote_all #=> Boolean
1114
1299
  # resp.format_options.tsv_options.read_options.escape #=> String
1115
1300
  # resp.format_options.tsv_options.read_options.escape_quotes #=> Boolean
1301
+ # resp.format_options.tsv_options.read_options.comment #=> String
1116
1302
  # resp.format_options.tsv_options.read_options.header #=> Boolean
1117
1303
  # resp.format_options.tsv_options.read_options.line_sep #=> String
1118
- # resp.format_options.tsv_options.read_options.quote #=> String
1119
- # resp.format_options.tsv_options.read_options.quote_all #=> Boolean
1120
- # resp.format_options.tsv_options.read_options.sep #=> String
1121
- # resp.format_options.vcf_options.ignore_filter_field #=> Boolean
1122
1304
  # resp.format_options.vcf_options.ignore_qual_field #=> Boolean
1123
- # resp.id #=> String
1124
- # resp.items #=> Array
1125
- # resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
1126
- # resp.items[0].source #=> String
1127
- # resp.role_arn #=> String
1128
- # resp.run_left_normalization #=> Boolean
1129
- # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
1130
- # resp.status_message #=> String
1131
- # resp.update_time #=> Time
1305
+ # resp.format_options.vcf_options.ignore_filter_field #=> Boolean
1306
+ # resp.annotation_fields #=> Hash
1307
+ # resp.annotation_fields["AnnotationFieldMapKeyString"] #=> String
1132
1308
  #
1133
1309
  #
1134
1310
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1151,20 +1327,20 @@ module Aws::Omics
1151
1327
  #
1152
1328
  # @return [Types::GetAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1153
1329
  #
1154
- # * {Types::GetAnnotationStoreResponse#creation_time #creation_time} => Time
1155
- # * {Types::GetAnnotationStoreResponse#description #description} => String
1156
1330
  # * {Types::GetAnnotationStoreResponse#id #id} => String
1157
- # * {Types::GetAnnotationStoreResponse#name #name} => String
1158
1331
  # * {Types::GetAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
1159
- # * {Types::GetAnnotationStoreResponse#sse_config #sse_config} => Types::SseConfig
1160
1332
  # * {Types::GetAnnotationStoreResponse#status #status} => String
1161
- # * {Types::GetAnnotationStoreResponse#status_message #status_message} => String
1162
1333
  # * {Types::GetAnnotationStoreResponse#store_arn #store_arn} => String
1163
- # * {Types::GetAnnotationStoreResponse#store_format #store_format} => String
1334
+ # * {Types::GetAnnotationStoreResponse#name #name} => String
1335
+ # * {Types::GetAnnotationStoreResponse#description #description} => String
1336
+ # * {Types::GetAnnotationStoreResponse#sse_config #sse_config} => Types::SseConfig
1337
+ # * {Types::GetAnnotationStoreResponse#creation_time #creation_time} => Time
1338
+ # * {Types::GetAnnotationStoreResponse#update_time #update_time} => Time
1339
+ # * {Types::GetAnnotationStoreResponse#tags #tags} => Hash&lt;String,String&gt;
1164
1340
  # * {Types::GetAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
1341
+ # * {Types::GetAnnotationStoreResponse#store_format #store_format} => String
1342
+ # * {Types::GetAnnotationStoreResponse#status_message #status_message} => String
1165
1343
  # * {Types::GetAnnotationStoreResponse#store_size_bytes #store_size_bytes} => Integer
1166
- # * {Types::GetAnnotationStoreResponse#tags #tags} => Hash&lt;String,String&gt;
1167
- # * {Types::GetAnnotationStoreResponse#update_time #update_time} => Time
1168
1344
  #
1169
1345
  # @example Request syntax with placeholder values
1170
1346
  #
@@ -1174,27 +1350,27 @@ module Aws::Omics
1174
1350
  #
1175
1351
  # @example Response structure
1176
1352
  #
1177
- # resp.creation_time #=> Time
1178
- # resp.description #=> String
1179
1353
  # resp.id #=> String
1180
- # resp.name #=> String
1181
1354
  # resp.reference.reference_arn #=> String
1182
- # resp.sse_config.key_arn #=> String
1183
- # resp.sse_config.type #=> String, one of "KMS"
1184
1355
  # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
1185
- # resp.status_message #=> String
1186
1356
  # resp.store_arn #=> String
1187
- # resp.store_format #=> String, one of "GFF", "TSV", "VCF"
1357
+ # resp.name #=> String
1358
+ # resp.description #=> String
1359
+ # resp.sse_config.type #=> String, one of "KMS"
1360
+ # resp.sse_config.key_arn #=> String
1361
+ # resp.creation_time #=> Time
1362
+ # resp.update_time #=> Time
1363
+ # resp.tags #=> Hash
1364
+ # resp.tags["TagKey"] #=> String
1188
1365
  # resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
1189
1366
  # resp.store_options.tsv_store_options.format_to_header #=> Hash
1190
1367
  # resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
1191
1368
  # resp.store_options.tsv_store_options.schema #=> Array
1192
1369
  # resp.store_options.tsv_store_options.schema[0] #=> Hash
1193
1370
  # resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
1371
+ # resp.store_format #=> String, one of "GFF", "TSV", "VCF"
1372
+ # resp.status_message #=> String
1194
1373
  # resp.store_size_bytes #=> Integer
1195
- # resp.tags #=> Hash
1196
- # resp.tags["TagKey"] #=> String
1197
- # resp.update_time #=> Time
1198
1374
  #
1199
1375
  #
1200
1376
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1213,18 +1389,18 @@ module Aws::Omics
1213
1389
 
1214
1390
  # Gets a file from a read set.
1215
1391
  #
1216
- # @option params [String] :file
1217
- # The file to retrieve.
1218
- #
1219
1392
  # @option params [required, String] :id
1220
1393
  # The read set's ID.
1221
1394
  #
1222
- # @option params [required, Integer] :part_number
1223
- # The part number to retrieve.
1224
- #
1225
1395
  # @option params [required, String] :sequence_store_id
1226
1396
  # The read set's sequence store ID.
1227
1397
  #
1398
+ # @option params [String] :file
1399
+ # The file to retrieve.
1400
+ #
1401
+ # @option params [required, Integer] :part_number
1402
+ # The part number to retrieve.
1403
+ #
1228
1404
  # @return [Types::GetReadSetResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1229
1405
  #
1230
1406
  # * {Types::GetReadSetResponse#payload #payload} => IO
@@ -1232,10 +1408,10 @@ module Aws::Omics
1232
1408
  # @example Request syntax with placeholder values
1233
1409
  #
1234
1410
  # resp = client.get_read_set({
1235
- # file: "SOURCE1", # accepts SOURCE1, SOURCE2, INDEX
1236
1411
  # id: "ReadSetId", # required
1237
- # part_number: 1, # required
1238
1412
  # sequence_store_id: "SequenceStoreId", # required
1413
+ # file: "SOURCE1", # accepts SOURCE1, SOURCE2, INDEX
1414
+ # part_number: 1, # required
1239
1415
  # })
1240
1416
  #
1241
1417
  # @example Response structure
@@ -1261,13 +1437,13 @@ module Aws::Omics
1261
1437
  #
1262
1438
  # @return [Types::GetReadSetActivationJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1263
1439
  #
1264
- # * {Types::GetReadSetActivationJobResponse#completion_time #completion_time} => Time
1265
- # * {Types::GetReadSetActivationJobResponse#creation_time #creation_time} => Time
1266
1440
  # * {Types::GetReadSetActivationJobResponse#id #id} => String
1267
1441
  # * {Types::GetReadSetActivationJobResponse#sequence_store_id #sequence_store_id} => String
1268
- # * {Types::GetReadSetActivationJobResponse#sources #sources} => Array&lt;Types::ActivateReadSetSourceItem&gt;
1269
1442
  # * {Types::GetReadSetActivationJobResponse#status #status} => String
1270
1443
  # * {Types::GetReadSetActivationJobResponse#status_message #status_message} => String
1444
+ # * {Types::GetReadSetActivationJobResponse#creation_time #creation_time} => Time
1445
+ # * {Types::GetReadSetActivationJobResponse#completion_time #completion_time} => Time
1446
+ # * {Types::GetReadSetActivationJobResponse#sources #sources} => Array&lt;Types::ActivateReadSetSourceItem&gt;
1271
1447
  #
1272
1448
  # @example Request syntax with placeholder values
1273
1449
  #
@@ -1278,16 +1454,16 @@ module Aws::Omics
1278
1454
  #
1279
1455
  # @example Response structure
1280
1456
  #
1281
- # resp.completion_time #=> Time
1282
- # resp.creation_time #=> Time
1283
1457
  # resp.id #=> String
1284
1458
  # resp.sequence_store_id #=> String
1459
+ # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1460
+ # resp.status_message #=> String
1461
+ # resp.creation_time #=> Time
1462
+ # resp.completion_time #=> Time
1285
1463
  # resp.sources #=> Array
1286
1464
  # resp.sources[0].read_set_id #=> String
1287
1465
  # resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
1288
1466
  # resp.sources[0].status_message #=> String
1289
- # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1290
- # resp.status_message #=> String
1291
1467
  #
1292
1468
  #
1293
1469
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1305,43 +1481,43 @@ module Aws::Omics
1305
1481
 
1306
1482
  # Gets information about a read set export job.
1307
1483
  #
1308
- # @option params [required, String] :id
1309
- # The job's ID.
1310
- #
1311
1484
  # @option params [required, String] :sequence_store_id
1312
1485
  # The job's sequence store ID.
1313
1486
  #
1487
+ # @option params [required, String] :id
1488
+ # The job's ID.
1489
+ #
1314
1490
  # @return [Types::GetReadSetExportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1315
1491
  #
1316
- # * {Types::GetReadSetExportJobResponse#completion_time #completion_time} => Time
1317
- # * {Types::GetReadSetExportJobResponse#creation_time #creation_time} => Time
1318
- # * {Types::GetReadSetExportJobResponse#destination #destination} => String
1319
1492
  # * {Types::GetReadSetExportJobResponse#id #id} => String
1320
- # * {Types::GetReadSetExportJobResponse#read_sets #read_sets} => Array&lt;Types::ExportReadSetDetail&gt;
1321
1493
  # * {Types::GetReadSetExportJobResponse#sequence_store_id #sequence_store_id} => String
1494
+ # * {Types::GetReadSetExportJobResponse#destination #destination} => String
1322
1495
  # * {Types::GetReadSetExportJobResponse#status #status} => String
1323
1496
  # * {Types::GetReadSetExportJobResponse#status_message #status_message} => String
1497
+ # * {Types::GetReadSetExportJobResponse#creation_time #creation_time} => Time
1498
+ # * {Types::GetReadSetExportJobResponse#completion_time #completion_time} => Time
1499
+ # * {Types::GetReadSetExportJobResponse#read_sets #read_sets} => Array&lt;Types::ExportReadSetDetail&gt;
1324
1500
  #
1325
1501
  # @example Request syntax with placeholder values
1326
1502
  #
1327
1503
  # resp = client.get_read_set_export_job({
1328
- # id: "ExportJobId", # required
1329
1504
  # sequence_store_id: "SequenceStoreId", # required
1505
+ # id: "ExportJobId", # required
1330
1506
  # })
1331
1507
  #
1332
1508
  # @example Response structure
1333
1509
  #
1334
- # resp.completion_time #=> Time
1335
- # resp.creation_time #=> Time
1336
- # resp.destination #=> String
1337
1510
  # resp.id #=> String
1511
+ # resp.sequence_store_id #=> String
1512
+ # resp.destination #=> String
1513
+ # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1514
+ # resp.status_message #=> String
1515
+ # resp.creation_time #=> Time
1516
+ # resp.completion_time #=> Time
1338
1517
  # resp.read_sets #=> Array
1339
1518
  # resp.read_sets[0].id #=> String
1340
1519
  # resp.read_sets[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
1341
1520
  # resp.read_sets[0].status_message #=> String
1342
- # resp.sequence_store_id #=> String
1343
- # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1344
- # resp.status_message #=> String
1345
1521
  #
1346
1522
  #
1347
1523
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1367,14 +1543,14 @@ module Aws::Omics
1367
1543
  #
1368
1544
  # @return [Types::GetReadSetImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1369
1545
  #
1370
- # * {Types::GetReadSetImportJobResponse#completion_time #completion_time} => Time
1371
- # * {Types::GetReadSetImportJobResponse#creation_time #creation_time} => Time
1372
1546
  # * {Types::GetReadSetImportJobResponse#id #id} => String
1373
- # * {Types::GetReadSetImportJobResponse#role_arn #role_arn} => String
1374
1547
  # * {Types::GetReadSetImportJobResponse#sequence_store_id #sequence_store_id} => String
1375
- # * {Types::GetReadSetImportJobResponse#sources #sources} => Array&lt;Types::ImportReadSetSourceItem&gt;
1548
+ # * {Types::GetReadSetImportJobResponse#role_arn #role_arn} => String
1376
1549
  # * {Types::GetReadSetImportJobResponse#status #status} => String
1377
1550
  # * {Types::GetReadSetImportJobResponse#status_message #status_message} => String
1551
+ # * {Types::GetReadSetImportJobResponse#creation_time #creation_time} => Time
1552
+ # * {Types::GetReadSetImportJobResponse#completion_time #completion_time} => Time
1553
+ # * {Types::GetReadSetImportJobResponse#sources #sources} => Array&lt;Types::ImportReadSetSourceItem&gt;
1378
1554
  #
1379
1555
  # @example Request syntax with placeholder values
1380
1556
  #
@@ -1385,27 +1561,27 @@ module Aws::Omics
1385
1561
  #
1386
1562
  # @example Response structure
1387
1563
  #
1388
- # resp.completion_time #=> Time
1389
- # resp.creation_time #=> Time
1390
1564
  # resp.id #=> String
1391
- # resp.role_arn #=> String
1392
1565
  # resp.sequence_store_id #=> String
1566
+ # resp.role_arn #=> String
1567
+ # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1568
+ # resp.status_message #=> String
1569
+ # resp.creation_time #=> Time
1570
+ # resp.completion_time #=> Time
1393
1571
  # resp.sources #=> Array
1394
- # resp.sources[0].description #=> String
1395
- # resp.sources[0].generated_from #=> String
1396
- # resp.sources[0].name #=> String
1397
- # resp.sources[0].reference_arn #=> String
1398
- # resp.sources[0].sample_id #=> String
1399
- # resp.sources[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
1400
1572
  # resp.sources[0].source_files.source1 #=> String
1401
1573
  # resp.sources[0].source_files.source2 #=> String
1574
+ # resp.sources[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
1402
1575
  # resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
1403
1576
  # resp.sources[0].status_message #=> String
1404
1577
  # resp.sources[0].subject_id #=> String
1578
+ # resp.sources[0].sample_id #=> String
1579
+ # resp.sources[0].generated_from #=> String
1580
+ # resp.sources[0].reference_arn #=> String
1581
+ # resp.sources[0].name #=> String
1582
+ # resp.sources[0].description #=> String
1405
1583
  # resp.sources[0].tags #=> Hash
1406
1584
  # resp.sources[0].tags["TagKey"] #=> String
1407
- # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1408
- # resp.status_message #=> String
1409
1585
  #
1410
1586
  #
1411
1587
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1431,19 +1607,20 @@ module Aws::Omics
1431
1607
  #
1432
1608
  # @return [Types::GetReadSetMetadataResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1433
1609
  #
1610
+ # * {Types::GetReadSetMetadataResponse#id #id} => String
1434
1611
  # * {Types::GetReadSetMetadataResponse#arn #arn} => String
1435
- # * {Types::GetReadSetMetadataResponse#creation_time #creation_time} => Time
1612
+ # * {Types::GetReadSetMetadataResponse#sequence_store_id #sequence_store_id} => String
1613
+ # * {Types::GetReadSetMetadataResponse#subject_id #subject_id} => String
1614
+ # * {Types::GetReadSetMetadataResponse#sample_id #sample_id} => String
1615
+ # * {Types::GetReadSetMetadataResponse#status #status} => String
1616
+ # * {Types::GetReadSetMetadataResponse#name #name} => String
1436
1617
  # * {Types::GetReadSetMetadataResponse#description #description} => String
1437
1618
  # * {Types::GetReadSetMetadataResponse#file_type #file_type} => String
1438
- # * {Types::GetReadSetMetadataResponse#files #files} => Types::ReadSetFiles
1439
- # * {Types::GetReadSetMetadataResponse#id #id} => String
1440
- # * {Types::GetReadSetMetadataResponse#name #name} => String
1441
- # * {Types::GetReadSetMetadataResponse#reference_arn #reference_arn} => String
1442
- # * {Types::GetReadSetMetadataResponse#sample_id #sample_id} => String
1619
+ # * {Types::GetReadSetMetadataResponse#creation_time #creation_time} => Time
1443
1620
  # * {Types::GetReadSetMetadataResponse#sequence_information #sequence_information} => Types::SequenceInformation
1444
- # * {Types::GetReadSetMetadataResponse#sequence_store_id #sequence_store_id} => String
1445
- # * {Types::GetReadSetMetadataResponse#status #status} => String
1446
- # * {Types::GetReadSetMetadataResponse#subject_id #subject_id} => String
1621
+ # * {Types::GetReadSetMetadataResponse#reference_arn #reference_arn} => String
1622
+ # * {Types::GetReadSetMetadataResponse#files #files} => Types::ReadSetFiles
1623
+ # * {Types::GetReadSetMetadataResponse#status_message #status_message} => String
1447
1624
  #
1448
1625
  # @example Request syntax with placeholder values
1449
1626
  #
@@ -1454,33 +1631,34 @@ module Aws::Omics
1454
1631
  #
1455
1632
  # @example Response structure
1456
1633
  #
1634
+ # resp.id #=> String
1457
1635
  # resp.arn #=> String
1458
- # resp.creation_time #=> Time
1636
+ # resp.sequence_store_id #=> String
1637
+ # resp.subject_id #=> String
1638
+ # resp.sample_id #=> String
1639
+ # resp.status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "PROCESSING_UPLOAD", "UPLOAD_FAILED"
1640
+ # resp.name #=> String
1459
1641
  # resp.description #=> String
1460
1642
  # resp.file_type #=> String, one of "FASTQ", "BAM", "CRAM"
1461
- # resp.files.index.content_length #=> Integer
1462
- # resp.files.index.part_size #=> Integer
1463
- # resp.files.index.total_parts #=> Integer
1464
- # resp.files.source1.content_length #=> Integer
1465
- # resp.files.source1.part_size #=> Integer
1643
+ # resp.creation_time #=> Time
1644
+ # resp.sequence_information.total_read_count #=> Integer
1645
+ # resp.sequence_information.total_base_count #=> Integer
1646
+ # resp.sequence_information.generated_from #=> String
1647
+ # resp.sequence_information.alignment #=> String
1648
+ # resp.reference_arn #=> String
1466
1649
  # resp.files.source1.total_parts #=> Integer
1467
- # resp.files.source2.content_length #=> Integer
1468
- # resp.files.source2.part_size #=> Integer
1650
+ # resp.files.source1.part_size #=> Integer
1651
+ # resp.files.source1.content_length #=> Integer
1469
1652
  # resp.files.source2.total_parts #=> Integer
1470
- # resp.id #=> String
1471
- # resp.name #=> String
1472
- # resp.reference_arn #=> String
1473
- # resp.sample_id #=> String
1474
- # resp.sequence_information.alignment #=> String
1475
- # resp.sequence_information.generated_from #=> String
1476
- # resp.sequence_information.total_base_count #=> Integer
1477
- # resp.sequence_information.total_read_count #=> Integer
1478
- # resp.sequence_store_id #=> String
1479
- # resp.status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED"
1480
- # resp.subject_id #=> String
1481
- #
1482
- # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetMetadata AWS API Documentation
1483
- #
1653
+ # resp.files.source2.part_size #=> Integer
1654
+ # resp.files.source2.content_length #=> Integer
1655
+ # resp.files.index.total_parts #=> Integer
1656
+ # resp.files.index.part_size #=> Integer
1657
+ # resp.files.index.content_length #=> Integer
1658
+ # resp.status_message #=> String
1659
+ #
1660
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetMetadata AWS API Documentation
1661
+ #
1484
1662
  # @overload get_read_set_metadata(params = {})
1485
1663
  # @param [Hash] params ({})
1486
1664
  def get_read_set_metadata(params = {}, options = {})
@@ -1490,20 +1668,20 @@ module Aws::Omics
1490
1668
 
1491
1669
  # Gets a reference file.
1492
1670
  #
1493
- # @option params [String] :file
1494
- # The file to retrieve.
1495
- #
1496
1671
  # @option params [required, String] :id
1497
1672
  # The reference's ID.
1498
1673
  #
1499
- # @option params [required, Integer] :part_number
1500
- # The part number to retrieve.
1674
+ # @option params [required, String] :reference_store_id
1675
+ # The reference's store ID.
1501
1676
  #
1502
1677
  # @option params [String] :range
1503
1678
  # The range to retrieve.
1504
1679
  #
1505
- # @option params [required, String] :reference_store_id
1506
- # The reference's store ID.
1680
+ # @option params [required, Integer] :part_number
1681
+ # The part number to retrieve.
1682
+ #
1683
+ # @option params [String] :file
1684
+ # The file to retrieve.
1507
1685
  #
1508
1686
  # @return [Types::GetReferenceResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1509
1687
  #
@@ -1512,11 +1690,11 @@ module Aws::Omics
1512
1690
  # @example Request syntax with placeholder values
1513
1691
  #
1514
1692
  # resp = client.get_reference({
1515
- # file: "SOURCE", # accepts SOURCE, INDEX
1516
1693
  # id: "ReferenceId", # required
1517
- # part_number: 1, # required
1518
- # range: "Range",
1519
1694
  # reference_store_id: "ReferenceStoreId", # required
1695
+ # range: "Range",
1696
+ # part_number: 1, # required
1697
+ # file: "SOURCE", # accepts SOURCE, INDEX
1520
1698
  # })
1521
1699
  #
1522
1700
  # @example Response structure
@@ -1542,14 +1720,14 @@ module Aws::Omics
1542
1720
  #
1543
1721
  # @return [Types::GetReferenceImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1544
1722
  #
1545
- # * {Types::GetReferenceImportJobResponse#completion_time #completion_time} => Time
1546
- # * {Types::GetReferenceImportJobResponse#creation_time #creation_time} => Time
1547
1723
  # * {Types::GetReferenceImportJobResponse#id #id} => String
1548
1724
  # * {Types::GetReferenceImportJobResponse#reference_store_id #reference_store_id} => String
1549
1725
  # * {Types::GetReferenceImportJobResponse#role_arn #role_arn} => String
1550
- # * {Types::GetReferenceImportJobResponse#sources #sources} => Array&lt;Types::ImportReferenceSourceItem&gt;
1551
1726
  # * {Types::GetReferenceImportJobResponse#status #status} => String
1552
1727
  # * {Types::GetReferenceImportJobResponse#status_message #status_message} => String
1728
+ # * {Types::GetReferenceImportJobResponse#creation_time #creation_time} => Time
1729
+ # * {Types::GetReferenceImportJobResponse#completion_time #completion_time} => Time
1730
+ # * {Types::GetReferenceImportJobResponse#sources #sources} => Array&lt;Types::ImportReferenceSourceItem&gt;
1553
1731
  #
1554
1732
  # @example Request syntax with placeholder values
1555
1733
  #
@@ -1560,21 +1738,21 @@ module Aws::Omics
1560
1738
  #
1561
1739
  # @example Response structure
1562
1740
  #
1563
- # resp.completion_time #=> Time
1564
- # resp.creation_time #=> Time
1565
1741
  # resp.id #=> String
1566
1742
  # resp.reference_store_id #=> String
1567
1743
  # resp.role_arn #=> String
1744
+ # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1745
+ # resp.status_message #=> String
1746
+ # resp.creation_time #=> Time
1747
+ # resp.completion_time #=> Time
1568
1748
  # resp.sources #=> Array
1569
- # resp.sources[0].description #=> String
1570
- # resp.sources[0].name #=> String
1571
1749
  # resp.sources[0].source_file #=> String
1572
1750
  # resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED"
1573
1751
  # resp.sources[0].status_message #=> String
1752
+ # resp.sources[0].name #=> String
1753
+ # resp.sources[0].description #=> String
1574
1754
  # resp.sources[0].tags #=> Hash
1575
1755
  # resp.sources[0].tags["TagKey"] #=> String
1576
- # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
1577
- # resp.status_message #=> String
1578
1756
  #
1579
1757
  #
1580
1758
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1600,16 +1778,16 @@ module Aws::Omics
1600
1778
  #
1601
1779
  # @return [Types::GetReferenceMetadataResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1602
1780
  #
1603
- # * {Types::GetReferenceMetadataResponse#arn #arn} => String
1604
- # * {Types::GetReferenceMetadataResponse#creation_time #creation_time} => Time
1605
- # * {Types::GetReferenceMetadataResponse#description #description} => String
1606
- # * {Types::GetReferenceMetadataResponse#files #files} => Types::ReferenceFiles
1607
1781
  # * {Types::GetReferenceMetadataResponse#id #id} => String
1608
- # * {Types::GetReferenceMetadataResponse#md5 #md5} => String
1609
- # * {Types::GetReferenceMetadataResponse#name #name} => String
1782
+ # * {Types::GetReferenceMetadataResponse#arn #arn} => String
1610
1783
  # * {Types::GetReferenceMetadataResponse#reference_store_id #reference_store_id} => String
1784
+ # * {Types::GetReferenceMetadataResponse#md5 #md5} => String
1611
1785
  # * {Types::GetReferenceMetadataResponse#status #status} => String
1786
+ # * {Types::GetReferenceMetadataResponse#name #name} => String
1787
+ # * {Types::GetReferenceMetadataResponse#description #description} => String
1788
+ # * {Types::GetReferenceMetadataResponse#creation_time #creation_time} => Time
1612
1789
  # * {Types::GetReferenceMetadataResponse#update_time #update_time} => Time
1790
+ # * {Types::GetReferenceMetadataResponse#files #files} => Types::ReferenceFiles
1613
1791
  #
1614
1792
  # @example Request syntax with placeholder values
1615
1793
  #
@@ -1620,21 +1798,21 @@ module Aws::Omics
1620
1798
  #
1621
1799
  # @example Response structure
1622
1800
  #
1623
- # resp.arn #=> String
1624
- # resp.creation_time #=> Time
1625
- # resp.description #=> String
1626
- # resp.files.index.content_length #=> Integer
1627
- # resp.files.index.part_size #=> Integer
1628
- # resp.files.index.total_parts #=> Integer
1629
- # resp.files.source.content_length #=> Integer
1630
- # resp.files.source.part_size #=> Integer
1631
- # resp.files.source.total_parts #=> Integer
1632
1801
  # resp.id #=> String
1633
- # resp.md5 #=> String
1634
- # resp.name #=> String
1802
+ # resp.arn #=> String
1635
1803
  # resp.reference_store_id #=> String
1804
+ # resp.md5 #=> String
1636
1805
  # resp.status #=> String, one of "ACTIVE", "DELETING", "DELETED"
1806
+ # resp.name #=> String
1807
+ # resp.description #=> String
1808
+ # resp.creation_time #=> Time
1637
1809
  # resp.update_time #=> Time
1810
+ # resp.files.source.total_parts #=> Integer
1811
+ # resp.files.source.part_size #=> Integer
1812
+ # resp.files.source.content_length #=> Integer
1813
+ # resp.files.index.total_parts #=> Integer
1814
+ # resp.files.index.part_size #=> Integer
1815
+ # resp.files.index.content_length #=> Integer
1638
1816
  #
1639
1817
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceMetadata AWS API Documentation
1640
1818
  #
@@ -1652,12 +1830,12 @@ module Aws::Omics
1652
1830
  #
1653
1831
  # @return [Types::GetReferenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1654
1832
  #
1655
- # * {Types::GetReferenceStoreResponse#arn #arn} => String
1656
- # * {Types::GetReferenceStoreResponse#creation_time #creation_time} => Time
1657
- # * {Types::GetReferenceStoreResponse#description #description} => String
1658
1833
  # * {Types::GetReferenceStoreResponse#id #id} => String
1834
+ # * {Types::GetReferenceStoreResponse#arn #arn} => String
1659
1835
  # * {Types::GetReferenceStoreResponse#name #name} => String
1836
+ # * {Types::GetReferenceStoreResponse#description #description} => String
1660
1837
  # * {Types::GetReferenceStoreResponse#sse_config #sse_config} => Types::SseConfig
1838
+ # * {Types::GetReferenceStoreResponse#creation_time #creation_time} => Time
1661
1839
  #
1662
1840
  # @example Request syntax with placeholder values
1663
1841
  #
@@ -1667,13 +1845,13 @@ module Aws::Omics
1667
1845
  #
1668
1846
  # @example Response structure
1669
1847
  #
1670
- # resp.arn #=> String
1671
- # resp.creation_time #=> Time
1672
- # resp.description #=> String
1673
1848
  # resp.id #=> String
1849
+ # resp.arn #=> String
1674
1850
  # resp.name #=> String
1675
- # resp.sse_config.key_arn #=> String
1851
+ # resp.description #=> String
1676
1852
  # resp.sse_config.type #=> String, one of "KMS"
1853
+ # resp.sse_config.key_arn #=> String
1854
+ # resp.creation_time #=> Time
1677
1855
  #
1678
1856
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceStore AWS API Documentation
1679
1857
  #
@@ -1686,71 +1864,73 @@ module Aws::Omics
1686
1864
 
1687
1865
  # Gets information about a workflow run.
1688
1866
  #
1689
- # @option params [Array<String>] :export
1690
- # The run's export format.
1691
- #
1692
1867
  # @option params [required, String] :id
1693
1868
  # The run's ID.
1694
1869
  #
1870
+ # @option params [Array<String>] :export
1871
+ # The run's export format.
1872
+ #
1695
1873
  # @return [Types::GetRunResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1696
1874
  #
1697
1875
  # * {Types::GetRunResponse#arn #arn} => String
1698
- # * {Types::GetRunResponse#creation_time #creation_time} => Time
1699
- # * {Types::GetRunResponse#definition #definition} => String
1700
- # * {Types::GetRunResponse#digest #digest} => String
1701
1876
  # * {Types::GetRunResponse#id #id} => String
1702
- # * {Types::GetRunResponse#log_level #log_level} => String
1877
+ # * {Types::GetRunResponse#status #status} => String
1878
+ # * {Types::GetRunResponse#workflow_id #workflow_id} => String
1879
+ # * {Types::GetRunResponse#workflow_type #workflow_type} => String
1880
+ # * {Types::GetRunResponse#run_id #run_id} => String
1881
+ # * {Types::GetRunResponse#role_arn #role_arn} => String
1703
1882
  # * {Types::GetRunResponse#name #name} => String
1704
- # * {Types::GetRunResponse#output_uri #output_uri} => String
1705
- # * {Types::GetRunResponse#parameters #parameters} => Hash,Array,String,Numeric,Boolean
1883
+ # * {Types::GetRunResponse#run_group_id #run_group_id} => String
1706
1884
  # * {Types::GetRunResponse#priority #priority} => Integer
1885
+ # * {Types::GetRunResponse#definition #definition} => String
1886
+ # * {Types::GetRunResponse#digest #digest} => String
1887
+ # * {Types::GetRunResponse#parameters #parameters} => Hash,Array,String,Numeric,Boolean
1888
+ # * {Types::GetRunResponse#storage_capacity #storage_capacity} => Integer
1889
+ # * {Types::GetRunResponse#output_uri #output_uri} => String
1890
+ # * {Types::GetRunResponse#log_level #log_level} => String
1707
1891
  # * {Types::GetRunResponse#resource_digests #resource_digests} => Hash&lt;String,String&gt;
1708
- # * {Types::GetRunResponse#role_arn #role_arn} => String
1709
- # * {Types::GetRunResponse#run_group_id #run_group_id} => String
1710
- # * {Types::GetRunResponse#run_id #run_id} => String
1711
- # * {Types::GetRunResponse#start_time #start_time} => Time
1712
1892
  # * {Types::GetRunResponse#started_by #started_by} => String
1713
- # * {Types::GetRunResponse#status #status} => String
1714
- # * {Types::GetRunResponse#status_message #status_message} => String
1893
+ # * {Types::GetRunResponse#creation_time #creation_time} => Time
1894
+ # * {Types::GetRunResponse#start_time #start_time} => Time
1715
1895
  # * {Types::GetRunResponse#stop_time #stop_time} => Time
1716
- # * {Types::GetRunResponse#storage_capacity #storage_capacity} => Integer
1896
+ # * {Types::GetRunResponse#status_message #status_message} => String
1717
1897
  # * {Types::GetRunResponse#tags #tags} => Hash&lt;String,String&gt;
1718
- # * {Types::GetRunResponse#workflow_id #workflow_id} => String
1719
- # * {Types::GetRunResponse#workflow_type #workflow_type} => String
1898
+ # * {Types::GetRunResponse#accelerators #accelerators} => String
1720
1899
  #
1721
1900
  # @example Request syntax with placeholder values
1722
1901
  #
1723
1902
  # resp = client.get_run({
1724
- # export: ["DEFINITION"], # accepts DEFINITION
1725
1903
  # id: "RunId", # required
1904
+ # export: ["DEFINITION"], # accepts DEFINITION
1726
1905
  # })
1727
1906
  #
1728
1907
  # @example Response structure
1729
1908
  #
1730
1909
  # resp.arn #=> String
1731
- # resp.creation_time #=> Time
1732
- # resp.definition #=> String
1733
- # resp.digest #=> String
1734
1910
  # resp.id #=> String
1735
- # resp.log_level #=> String, one of "OFF", "FATAL", "ERROR", "ALL"
1911
+ # resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
1912
+ # resp.workflow_id #=> String
1913
+ # resp.workflow_type #=> String, one of "PRIVATE", "READY2RUN"
1914
+ # resp.run_id #=> String
1915
+ # resp.role_arn #=> String
1736
1916
  # resp.name #=> String
1737
- # resp.output_uri #=> String
1917
+ # resp.run_group_id #=> String
1738
1918
  # resp.priority #=> Integer
1919
+ # resp.definition #=> String
1920
+ # resp.digest #=> String
1921
+ # resp.storage_capacity #=> Integer
1922
+ # resp.output_uri #=> String
1923
+ # resp.log_level #=> String, one of "OFF", "FATAL", "ERROR", "ALL"
1739
1924
  # resp.resource_digests #=> Hash
1740
1925
  # resp.resource_digests["RunResourceDigestKey"] #=> String
1741
- # resp.role_arn #=> String
1742
- # resp.run_group_id #=> String
1743
- # resp.run_id #=> String
1744
- # resp.start_time #=> Time
1745
1926
  # resp.started_by #=> String
1746
- # resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
1747
- # resp.status_message #=> String
1927
+ # resp.creation_time #=> Time
1928
+ # resp.start_time #=> Time
1748
1929
  # resp.stop_time #=> Time
1749
- # resp.storage_capacity #=> Integer
1930
+ # resp.status_message #=> String
1750
1931
  # resp.tags #=> Hash
1751
1932
  # resp.tags["TagKey"] #=> String
1752
- # resp.workflow_id #=> String
1753
- # resp.workflow_type #=> String, one of "PRIVATE"
1933
+ # resp.accelerators #=> String, one of "GPU"
1754
1934
  #
1755
1935
  #
1756
1936
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1775,13 +1955,14 @@ module Aws::Omics
1775
1955
  # @return [Types::GetRunGroupResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1776
1956
  #
1777
1957
  # * {Types::GetRunGroupResponse#arn #arn} => String
1778
- # * {Types::GetRunGroupResponse#creation_time #creation_time} => Time
1779
1958
  # * {Types::GetRunGroupResponse#id #id} => String
1959
+ # * {Types::GetRunGroupResponse#name #name} => String
1780
1960
  # * {Types::GetRunGroupResponse#max_cpus #max_cpus} => Integer
1781
- # * {Types::GetRunGroupResponse#max_duration #max_duration} => Integer
1782
1961
  # * {Types::GetRunGroupResponse#max_runs #max_runs} => Integer
1783
- # * {Types::GetRunGroupResponse#name #name} => String
1962
+ # * {Types::GetRunGroupResponse#max_duration #max_duration} => Integer
1963
+ # * {Types::GetRunGroupResponse#creation_time #creation_time} => Time
1784
1964
  # * {Types::GetRunGroupResponse#tags #tags} => Hash&lt;String,String&gt;
1965
+ # * {Types::GetRunGroupResponse#max_gpus #max_gpus} => Integer
1785
1966
  #
1786
1967
  # @example Request syntax with placeholder values
1787
1968
  #
@@ -1792,14 +1973,15 @@ module Aws::Omics
1792
1973
  # @example Response structure
1793
1974
  #
1794
1975
  # resp.arn #=> String
1795
- # resp.creation_time #=> Time
1796
1976
  # resp.id #=> String
1977
+ # resp.name #=> String
1797
1978
  # resp.max_cpus #=> Integer
1798
- # resp.max_duration #=> Integer
1799
1979
  # resp.max_runs #=> Integer
1800
- # resp.name #=> String
1980
+ # resp.max_duration #=> Integer
1981
+ # resp.creation_time #=> Time
1801
1982
  # resp.tags #=> Hash
1802
1983
  # resp.tags["TagKey"] #=> String
1984
+ # resp.max_gpus #=> Integer
1803
1985
  #
1804
1986
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetRunGroup AWS API Documentation
1805
1987
  #
@@ -1820,16 +2002,17 @@ module Aws::Omics
1820
2002
  #
1821
2003
  # @return [Types::GetRunTaskResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1822
2004
  #
2005
+ # * {Types::GetRunTaskResponse#task_id #task_id} => String
2006
+ # * {Types::GetRunTaskResponse#status #status} => String
2007
+ # * {Types::GetRunTaskResponse#name #name} => String
1823
2008
  # * {Types::GetRunTaskResponse#cpus #cpus} => Integer
1824
- # * {Types::GetRunTaskResponse#creation_time #creation_time} => Time
1825
- # * {Types::GetRunTaskResponse#log_stream #log_stream} => String
1826
2009
  # * {Types::GetRunTaskResponse#memory #memory} => Integer
1827
- # * {Types::GetRunTaskResponse#name #name} => String
2010
+ # * {Types::GetRunTaskResponse#creation_time #creation_time} => Time
1828
2011
  # * {Types::GetRunTaskResponse#start_time #start_time} => Time
1829
- # * {Types::GetRunTaskResponse#status #status} => String
1830
- # * {Types::GetRunTaskResponse#status_message #status_message} => String
1831
2012
  # * {Types::GetRunTaskResponse#stop_time #stop_time} => Time
1832
- # * {Types::GetRunTaskResponse#task_id #task_id} => String
2013
+ # * {Types::GetRunTaskResponse#status_message #status_message} => String
2014
+ # * {Types::GetRunTaskResponse#log_stream #log_stream} => String
2015
+ # * {Types::GetRunTaskResponse#gpus #gpus} => Integer
1833
2016
  #
1834
2017
  # @example Request syntax with placeholder values
1835
2018
  #
@@ -1840,16 +2023,17 @@ module Aws::Omics
1840
2023
  #
1841
2024
  # @example Response structure
1842
2025
  #
2026
+ # resp.task_id #=> String
2027
+ # resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
2028
+ # resp.name #=> String
1843
2029
  # resp.cpus #=> Integer
1844
- # resp.creation_time #=> Time
1845
- # resp.log_stream #=> String
1846
2030
  # resp.memory #=> Integer
1847
- # resp.name #=> String
2031
+ # resp.creation_time #=> Time
1848
2032
  # resp.start_time #=> Time
1849
- # resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
1850
- # resp.status_message #=> String
1851
2033
  # resp.stop_time #=> Time
1852
- # resp.task_id #=> String
2034
+ # resp.status_message #=> String
2035
+ # resp.log_stream #=> String
2036
+ # resp.gpus #=> Integer
1853
2037
  #
1854
2038
  #
1855
2039
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1873,12 +2057,13 @@ module Aws::Omics
1873
2057
  #
1874
2058
  # @return [Types::GetSequenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1875
2059
  #
1876
- # * {Types::GetSequenceStoreResponse#arn #arn} => String
1877
- # * {Types::GetSequenceStoreResponse#creation_time #creation_time} => Time
1878
- # * {Types::GetSequenceStoreResponse#description #description} => String
1879
2060
  # * {Types::GetSequenceStoreResponse#id #id} => String
2061
+ # * {Types::GetSequenceStoreResponse#arn #arn} => String
1880
2062
  # * {Types::GetSequenceStoreResponse#name #name} => String
2063
+ # * {Types::GetSequenceStoreResponse#description #description} => String
1881
2064
  # * {Types::GetSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig
2065
+ # * {Types::GetSequenceStoreResponse#creation_time #creation_time} => Time
2066
+ # * {Types::GetSequenceStoreResponse#fallback_location #fallback_location} => String
1882
2067
  #
1883
2068
  # @example Request syntax with placeholder values
1884
2069
  #
@@ -1888,13 +2073,14 @@ module Aws::Omics
1888
2073
  #
1889
2074
  # @example Response structure
1890
2075
  #
1891
- # resp.arn #=> String
1892
- # resp.creation_time #=> Time
1893
- # resp.description #=> String
1894
2076
  # resp.id #=> String
2077
+ # resp.arn #=> String
1895
2078
  # resp.name #=> String
1896
- # resp.sse_config.key_arn #=> String
2079
+ # resp.description #=> String
1897
2080
  # resp.sse_config.type #=> String, one of "KMS"
2081
+ # resp.sse_config.key_arn #=> String
2082
+ # resp.creation_time #=> Time
2083
+ # resp.fallback_location #=> String
1898
2084
  #
1899
2085
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetSequenceStore AWS API Documentation
1900
2086
  #
@@ -1912,16 +2098,17 @@ module Aws::Omics
1912
2098
  #
1913
2099
  # @return [Types::GetVariantImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1914
2100
  #
1915
- # * {Types::GetVariantImportResponse#completion_time #completion_time} => Time
1916
- # * {Types::GetVariantImportResponse#creation_time #creation_time} => Time
1917
- # * {Types::GetVariantImportResponse#destination_name #destination_name} => String
1918
2101
  # * {Types::GetVariantImportResponse#id #id} => String
1919
- # * {Types::GetVariantImportResponse#items #items} => Array&lt;Types::VariantImportItemDetail&gt;
2102
+ # * {Types::GetVariantImportResponse#destination_name #destination_name} => String
1920
2103
  # * {Types::GetVariantImportResponse#role_arn #role_arn} => String
1921
- # * {Types::GetVariantImportResponse#run_left_normalization #run_left_normalization} => Boolean
1922
2104
  # * {Types::GetVariantImportResponse#status #status} => String
1923
2105
  # * {Types::GetVariantImportResponse#status_message #status_message} => String
2106
+ # * {Types::GetVariantImportResponse#creation_time #creation_time} => Time
1924
2107
  # * {Types::GetVariantImportResponse#update_time #update_time} => Time
2108
+ # * {Types::GetVariantImportResponse#completion_time #completion_time} => Time
2109
+ # * {Types::GetVariantImportResponse#items #items} => Array&lt;Types::VariantImportItemDetail&gt;
2110
+ # * {Types::GetVariantImportResponse#run_left_normalization #run_left_normalization} => Boolean
2111
+ # * {Types::GetVariantImportResponse#annotation_fields #annotation_fields} => Hash&lt;String,String&gt;
1925
2112
  #
1926
2113
  # @example Request syntax with placeholder values
1927
2114
  #
@@ -1931,19 +2118,21 @@ module Aws::Omics
1931
2118
  #
1932
2119
  # @example Response structure
1933
2120
  #
1934
- # resp.completion_time #=> Time
1935
- # resp.creation_time #=> Time
1936
- # resp.destination_name #=> String
1937
2121
  # resp.id #=> String
1938
- # resp.items #=> Array
1939
- # resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
1940
- # resp.items[0].source #=> String
1941
- # resp.items[0].status_message #=> String
2122
+ # resp.destination_name #=> String
1942
2123
  # resp.role_arn #=> String
1943
- # resp.run_left_normalization #=> Boolean
1944
2124
  # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
1945
2125
  # resp.status_message #=> String
2126
+ # resp.creation_time #=> Time
1946
2127
  # resp.update_time #=> Time
2128
+ # resp.completion_time #=> Time
2129
+ # resp.items #=> Array
2130
+ # resp.items[0].source #=> String
2131
+ # resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
2132
+ # resp.items[0].status_message #=> String
2133
+ # resp.run_left_normalization #=> Boolean
2134
+ # resp.annotation_fields #=> Hash
2135
+ # resp.annotation_fields["AnnotationFieldMapKeyString"] #=> String
1947
2136
  #
1948
2137
  #
1949
2138
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -1966,18 +2155,18 @@ module Aws::Omics
1966
2155
  #
1967
2156
  # @return [Types::GetVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
1968
2157
  #
1969
- # * {Types::GetVariantStoreResponse#creation_time #creation_time} => Time
1970
- # * {Types::GetVariantStoreResponse#description #description} => String
1971
2158
  # * {Types::GetVariantStoreResponse#id #id} => String
1972
- # * {Types::GetVariantStoreResponse#name #name} => String
1973
2159
  # * {Types::GetVariantStoreResponse#reference #reference} => Types::ReferenceItem
1974
- # * {Types::GetVariantStoreResponse#sse_config #sse_config} => Types::SseConfig
1975
2160
  # * {Types::GetVariantStoreResponse#status #status} => String
1976
- # * {Types::GetVariantStoreResponse#status_message #status_message} => String
1977
2161
  # * {Types::GetVariantStoreResponse#store_arn #store_arn} => String
1978
- # * {Types::GetVariantStoreResponse#store_size_bytes #store_size_bytes} => Integer
1979
- # * {Types::GetVariantStoreResponse#tags #tags} => Hash&lt;String,String&gt;
2162
+ # * {Types::GetVariantStoreResponse#name #name} => String
2163
+ # * {Types::GetVariantStoreResponse#description #description} => String
2164
+ # * {Types::GetVariantStoreResponse#sse_config #sse_config} => Types::SseConfig
2165
+ # * {Types::GetVariantStoreResponse#creation_time #creation_time} => Time
1980
2166
  # * {Types::GetVariantStoreResponse#update_time #update_time} => Time
2167
+ # * {Types::GetVariantStoreResponse#tags #tags} => Hash&lt;String,String&gt;
2168
+ # * {Types::GetVariantStoreResponse#status_message #status_message} => String
2169
+ # * {Types::GetVariantStoreResponse#store_size_bytes #store_size_bytes} => Integer
1981
2170
  #
1982
2171
  # @example Request syntax with placeholder values
1983
2172
  #
@@ -1987,20 +2176,20 @@ module Aws::Omics
1987
2176
  #
1988
2177
  # @example Response structure
1989
2178
  #
1990
- # resp.creation_time #=> Time
1991
- # resp.description #=> String
1992
2179
  # resp.id #=> String
1993
- # resp.name #=> String
1994
2180
  # resp.reference.reference_arn #=> String
1995
- # resp.sse_config.key_arn #=> String
1996
- # resp.sse_config.type #=> String, one of "KMS"
1997
2181
  # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
1998
- # resp.status_message #=> String
1999
2182
  # resp.store_arn #=> String
2000
- # resp.store_size_bytes #=> Integer
2183
+ # resp.name #=> String
2184
+ # resp.description #=> String
2185
+ # resp.sse_config.type #=> String, one of "KMS"
2186
+ # resp.sse_config.key_arn #=> String
2187
+ # resp.creation_time #=> Time
2188
+ # resp.update_time #=> Time
2001
2189
  # resp.tags #=> Hash
2002
2190
  # resp.tags["TagKey"] #=> String
2003
- # resp.update_time #=> Time
2191
+ # resp.status_message #=> String
2192
+ # resp.store_size_bytes #=> Integer
2004
2193
  #
2005
2194
  #
2006
2195
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -2019,61 +2208,66 @@ module Aws::Omics
2019
2208
 
2020
2209
  # Gets information about a workflow.
2021
2210
  #
2022
- # @option params [Array<String>] :export
2023
- # The export format for the workflow.
2024
- #
2025
2211
  # @option params [required, String] :id
2026
2212
  # The workflow's ID.
2027
2213
  #
2028
2214
  # @option params [String] :type
2029
2215
  # The workflow's type.
2030
2216
  #
2217
+ # @option params [Array<String>] :export
2218
+ # The export format for the workflow.
2219
+ #
2031
2220
  # @return [Types::GetWorkflowResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2032
2221
  #
2033
2222
  # * {Types::GetWorkflowResponse#arn #arn} => String
2034
- # * {Types::GetWorkflowResponse#creation_time #creation_time} => Time
2035
- # * {Types::GetWorkflowResponse#definition #definition} => String
2223
+ # * {Types::GetWorkflowResponse#id #id} => String
2224
+ # * {Types::GetWorkflowResponse#status #status} => String
2225
+ # * {Types::GetWorkflowResponse#type #type} => String
2226
+ # * {Types::GetWorkflowResponse#name #name} => String
2036
2227
  # * {Types::GetWorkflowResponse#description #description} => String
2037
- # * {Types::GetWorkflowResponse#digest #digest} => String
2038
2228
  # * {Types::GetWorkflowResponse#engine #engine} => String
2039
- # * {Types::GetWorkflowResponse#id #id} => String
2229
+ # * {Types::GetWorkflowResponse#definition #definition} => String
2040
2230
  # * {Types::GetWorkflowResponse#main #main} => String
2041
- # * {Types::GetWorkflowResponse#name #name} => String
2231
+ # * {Types::GetWorkflowResponse#digest #digest} => String
2042
2232
  # * {Types::GetWorkflowResponse#parameter_template #parameter_template} => Hash&lt;String,Types::WorkflowParameter&gt;
2043
- # * {Types::GetWorkflowResponse#status #status} => String
2044
- # * {Types::GetWorkflowResponse#status_message #status_message} => String
2045
2233
  # * {Types::GetWorkflowResponse#storage_capacity #storage_capacity} => Integer
2234
+ # * {Types::GetWorkflowResponse#creation_time #creation_time} => Time
2235
+ # * {Types::GetWorkflowResponse#status_message #status_message} => String
2046
2236
  # * {Types::GetWorkflowResponse#tags #tags} => Hash&lt;String,String&gt;
2047
- # * {Types::GetWorkflowResponse#type #type} => String
2237
+ # * {Types::GetWorkflowResponse#metadata #metadata} => Hash&lt;String,String&gt;
2238
+ # * {Types::GetWorkflowResponse#accelerators #accelerators} => String
2048
2239
  #
2049
2240
  # @example Request syntax with placeholder values
2050
2241
  #
2051
2242
  # resp = client.get_workflow({
2052
- # export: ["DEFINITION"], # accepts DEFINITION
2053
2243
  # id: "WorkflowId", # required
2054
- # type: "PRIVATE", # accepts PRIVATE
2244
+ # type: "PRIVATE", # accepts PRIVATE, READY2RUN
2245
+ # export: ["DEFINITION"], # accepts DEFINITION
2055
2246
  # })
2056
2247
  #
2057
2248
  # @example Response structure
2058
2249
  #
2059
2250
  # resp.arn #=> String
2060
- # resp.creation_time #=> Time
2061
- # resp.definition #=> String
2251
+ # resp.id #=> String
2252
+ # resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
2253
+ # resp.type #=> String, one of "PRIVATE", "READY2RUN"
2254
+ # resp.name #=> String
2062
2255
  # resp.description #=> String
2063
- # resp.digest #=> String
2064
2256
  # resp.engine #=> String, one of "WDL", "NEXTFLOW"
2065
- # resp.id #=> String
2257
+ # resp.definition #=> String
2066
2258
  # resp.main #=> String
2067
- # resp.name #=> String
2259
+ # resp.digest #=> String
2068
2260
  # resp.parameter_template #=> Hash
2069
2261
  # resp.parameter_template["WorkflowParameterName"].description #=> String
2070
2262
  # resp.parameter_template["WorkflowParameterName"].optional #=> Boolean
2071
- # resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
2072
- # resp.status_message #=> String
2073
2263
  # resp.storage_capacity #=> Integer
2264
+ # resp.creation_time #=> Time
2265
+ # resp.status_message #=> String
2074
2266
  # resp.tags #=> Hash
2075
2267
  # resp.tags["TagKey"] #=> String
2076
- # resp.type #=> String, one of "PRIVATE"
2268
+ # resp.metadata #=> Hash
2269
+ # resp.metadata["WorkflowMetadataKey"] #=> String
2270
+ # resp.accelerators #=> String, one of "GPU"
2077
2271
  #
2078
2272
  #
2079
2273
  # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
@@ -2091,19 +2285,19 @@ module Aws::Omics
2091
2285
 
2092
2286
  # Retrieves a list of annotation import jobs.
2093
2287
  #
2094
- # @option params [Types::ListAnnotationImportJobsFilter] :filter
2095
- # A filter to apply to the list.
2288
+ # @option params [Integer] :max_results
2289
+ # The maximum number of jobs to return in one page of results.
2096
2290
  #
2097
2291
  # @option params [Array<String>] :ids
2098
2292
  # IDs of annotation import jobs to retrieve.
2099
2293
  #
2100
- # @option params [Integer] :max_results
2101
- # The maximum number of jobs to return in one page of results.
2102
- #
2103
2294
  # @option params [String] :next_token
2104
2295
  # Specify the pagination token from a previous request to retrieve the
2105
2296
  # next page of results.
2106
2297
  #
2298
+ # @option params [Types::ListAnnotationImportJobsFilter] :filter
2299
+ # A filter to apply to the list.
2300
+ #
2107
2301
  # @return [Types::ListAnnotationImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2108
2302
  #
2109
2303
  # * {Types::ListAnnotationImportJobsResponse#annotation_import_jobs #annotation_import_jobs} => Array&lt;Types::AnnotationImportJobItem&gt;
@@ -2114,26 +2308,28 @@ module Aws::Omics
2114
2308
  # @example Request syntax with placeholder values
2115
2309
  #
2116
2310
  # resp = client.list_annotation_import_jobs({
2311
+ # max_results: 1,
2312
+ # ids: ["ResourceIdentifier"],
2313
+ # next_token: "ListAnnotationImportJobsRequestNextTokenString",
2117
2314
  # filter: {
2118
2315
  # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED, COMPLETED_WITH_FAILURES
2119
2316
  # store_name: "String",
2120
2317
  # },
2121
- # ids: ["ResourceIdentifier"],
2122
- # max_results: 1,
2123
- # next_token: "ListAnnotationImportJobsRequestNextTokenString",
2124
2318
  # })
2125
2319
  #
2126
2320
  # @example Response structure
2127
2321
  #
2128
2322
  # resp.annotation_import_jobs #=> Array
2129
- # resp.annotation_import_jobs[0].completion_time #=> Time
2130
- # resp.annotation_import_jobs[0].creation_time #=> Time
2131
- # resp.annotation_import_jobs[0].destination_name #=> String
2132
2323
  # resp.annotation_import_jobs[0].id #=> String
2324
+ # resp.annotation_import_jobs[0].destination_name #=> String
2133
2325
  # resp.annotation_import_jobs[0].role_arn #=> String
2134
- # resp.annotation_import_jobs[0].run_left_normalization #=> Boolean
2135
2326
  # resp.annotation_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
2327
+ # resp.annotation_import_jobs[0].creation_time #=> Time
2136
2328
  # resp.annotation_import_jobs[0].update_time #=> Time
2329
+ # resp.annotation_import_jobs[0].completion_time #=> Time
2330
+ # resp.annotation_import_jobs[0].run_left_normalization #=> Boolean
2331
+ # resp.annotation_import_jobs[0].annotation_fields #=> Hash
2332
+ # resp.annotation_import_jobs[0].annotation_fields["AnnotationFieldMapKeyString"] #=> String
2137
2333
  # resp.next_token #=> String
2138
2334
  #
2139
2335
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationImportJobs AWS API Documentation
@@ -2147,9 +2343,6 @@ module Aws::Omics
2147
2343
 
2148
2344
  # Retrieves a list of annotation stores.
2149
2345
  #
2150
- # @option params [Types::ListAnnotationStoresFilter] :filter
2151
- # A filter to apply to the list.
2152
- #
2153
2346
  # @option params [Array<String>] :ids
2154
2347
  # IDs of stores to list.
2155
2348
  #
@@ -2160,6 +2353,9 @@ module Aws::Omics
2160
2353
  # Specify the pagination token from a previous request to retrieve the
2161
2354
  # next page of results.
2162
2355
  #
2356
+ # @option params [Types::ListAnnotationStoresFilter] :filter
2357
+ # A filter to apply to the list.
2358
+ #
2163
2359
  # @return [Types::ListAnnotationStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2164
2360
  #
2165
2361
  # * {Types::ListAnnotationStoresResponse#annotation_stores #annotation_stores} => Array&lt;Types::AnnotationStoreItem&gt;
@@ -2170,30 +2366,30 @@ module Aws::Omics
2170
2366
  # @example Request syntax with placeholder values
2171
2367
  #
2172
2368
  # resp = client.list_annotation_stores({
2173
- # filter: {
2174
- # status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
2175
- # },
2176
2369
  # ids: ["ResourceIdentifier"],
2177
2370
  # max_results: 1,
2178
2371
  # next_token: "ListAnnotationStoresRequestNextTokenString",
2372
+ # filter: {
2373
+ # status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
2374
+ # },
2179
2375
  # })
2180
2376
  #
2181
2377
  # @example Response structure
2182
2378
  #
2183
2379
  # resp.annotation_stores #=> Array
2184
- # resp.annotation_stores[0].creation_time #=> Time
2185
- # resp.annotation_stores[0].description #=> String
2186
2380
  # resp.annotation_stores[0].id #=> String
2187
- # resp.annotation_stores[0].name #=> String
2188
2381
  # resp.annotation_stores[0].reference.reference_arn #=> String
2189
- # resp.annotation_stores[0].sse_config.key_arn #=> String
2190
- # resp.annotation_stores[0].sse_config.type #=> String, one of "KMS"
2191
2382
  # resp.annotation_stores[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
2192
- # resp.annotation_stores[0].status_message #=> String
2193
2383
  # resp.annotation_stores[0].store_arn #=> String
2384
+ # resp.annotation_stores[0].name #=> String
2194
2385
  # resp.annotation_stores[0].store_format #=> String, one of "GFF", "TSV", "VCF"
2195
- # resp.annotation_stores[0].store_size_bytes #=> Integer
2386
+ # resp.annotation_stores[0].description #=> String
2387
+ # resp.annotation_stores[0].sse_config.type #=> String, one of "KMS"
2388
+ # resp.annotation_stores[0].sse_config.key_arn #=> String
2389
+ # resp.annotation_stores[0].creation_time #=> Time
2196
2390
  # resp.annotation_stores[0].update_time #=> Time
2391
+ # resp.annotation_stores[0].status_message #=> String
2392
+ # resp.annotation_stores[0].store_size_bytes #=> Integer
2197
2393
  # resp.next_token #=> String
2198
2394
  #
2199
2395
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationStores AWS API Documentation
@@ -2205,10 +2401,64 @@ module Aws::Omics
2205
2401
  req.send_request(options)
2206
2402
  end
2207
2403
 
2404
+ # Lists all multipart read set uploads and their statuses.
2405
+ #
2406
+ # @option params [required, String] :sequence_store_id
2407
+ # The Sequence Store ID used for the multipart uploads.
2408
+ #
2409
+ # @option params [Integer] :max_results
2410
+ # The maximum number of multipart uploads returned in a page.
2411
+ #
2412
+ # @option params [String] :next_token
2413
+ # Next token returned in the response of a previous
2414
+ # ListMultipartReadSetUploads call. Used to get the next page of
2415
+ # results.
2416
+ #
2417
+ # @return [Types::ListMultipartReadSetUploadsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2418
+ #
2419
+ # * {Types::ListMultipartReadSetUploadsResponse#next_token #next_token} => String
2420
+ # * {Types::ListMultipartReadSetUploadsResponse#uploads #uploads} => Array&lt;Types::MultipartReadSetUploadListItem&gt;
2421
+ #
2422
+ # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2423
+ #
2424
+ # @example Request syntax with placeholder values
2425
+ #
2426
+ # resp = client.list_multipart_read_set_uploads({
2427
+ # sequence_store_id: "SequenceStoreId", # required
2428
+ # max_results: 1,
2429
+ # next_token: "NextToken",
2430
+ # })
2431
+ #
2432
+ # @example Response structure
2433
+ #
2434
+ # resp.next_token #=> String
2435
+ # resp.uploads #=> Array
2436
+ # resp.uploads[0].sequence_store_id #=> String
2437
+ # resp.uploads[0].upload_id #=> String
2438
+ # resp.uploads[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM"
2439
+ # resp.uploads[0].subject_id #=> String
2440
+ # resp.uploads[0].sample_id #=> String
2441
+ # resp.uploads[0].generated_from #=> String
2442
+ # resp.uploads[0].reference_arn #=> String
2443
+ # resp.uploads[0].name #=> String
2444
+ # resp.uploads[0].description #=> String
2445
+ # resp.uploads[0].tags #=> Hash
2446
+ # resp.uploads[0].tags["TagKey"] #=> String
2447
+ # resp.uploads[0].creation_time #=> Time
2448
+ #
2449
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListMultipartReadSetUploads AWS API Documentation
2450
+ #
2451
+ # @overload list_multipart_read_set_uploads(params = {})
2452
+ # @param [Hash] params ({})
2453
+ def list_multipart_read_set_uploads(params = {}, options = {})
2454
+ req = build_request(:list_multipart_read_set_uploads, params)
2455
+ req.send_request(options)
2456
+ end
2457
+
2208
2458
  # Retrieves a list of read set activation jobs.
2209
2459
  #
2210
- # @option params [Types::ActivateReadSetFilter] :filter
2211
- # A filter to apply to the list.
2460
+ # @option params [required, String] :sequence_store_id
2461
+ # The read set's sequence store ID.
2212
2462
  #
2213
2463
  # @option params [Integer] :max_results
2214
2464
  # The maximum number of read set activation jobs to return in one page
@@ -2218,38 +2468,38 @@ module Aws::Omics
2218
2468
  # Specify the pagination token from a previous request to retrieve the
2219
2469
  # next page of results.
2220
2470
  #
2221
- # @option params [required, String] :sequence_store_id
2222
- # The read set's sequence store ID.
2471
+ # @option params [Types::ActivateReadSetFilter] :filter
2472
+ # A filter to apply to the list.
2223
2473
  #
2224
2474
  # @return [Types::ListReadSetActivationJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2225
2475
  #
2226
- # * {Types::ListReadSetActivationJobsResponse#activation_jobs #activation_jobs} => Array&lt;Types::ActivateReadSetJobItem&gt;
2227
2476
  # * {Types::ListReadSetActivationJobsResponse#next_token #next_token} => String
2477
+ # * {Types::ListReadSetActivationJobsResponse#activation_jobs #activation_jobs} => Array&lt;Types::ActivateReadSetJobItem&gt;
2228
2478
  #
2229
2479
  # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2230
2480
  #
2231
2481
  # @example Request syntax with placeholder values
2232
2482
  #
2233
2483
  # resp = client.list_read_set_activation_jobs({
2484
+ # sequence_store_id: "SequenceStoreId", # required
2485
+ # max_results: 1,
2486
+ # next_token: "NextToken",
2234
2487
  # filter: {
2488
+ # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2235
2489
  # created_after: Time.now,
2236
2490
  # created_before: Time.now,
2237
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2238
2491
  # },
2239
- # max_results: 1,
2240
- # next_token: "NextToken",
2241
- # sequence_store_id: "SequenceStoreId", # required
2242
2492
  # })
2243
2493
  #
2244
2494
  # @example Response structure
2245
2495
  #
2496
+ # resp.next_token #=> String
2246
2497
  # resp.activation_jobs #=> Array
2247
- # resp.activation_jobs[0].completion_time #=> Time
2248
- # resp.activation_jobs[0].creation_time #=> Time
2249
2498
  # resp.activation_jobs[0].id #=> String
2250
2499
  # resp.activation_jobs[0].sequence_store_id #=> String
2251
2500
  # resp.activation_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
2252
- # resp.next_token #=> String
2501
+ # resp.activation_jobs[0].creation_time #=> Time
2502
+ # resp.activation_jobs[0].completion_time #=> Time
2253
2503
  #
2254
2504
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetActivationJobs AWS API Documentation
2255
2505
  #
@@ -2262,8 +2512,8 @@ module Aws::Omics
2262
2512
 
2263
2513
  # Retrieves a list of read set export jobs.
2264
2514
  #
2265
- # @option params [Types::ExportReadSetFilter] :filter
2266
- # A filter to apply to the list.
2515
+ # @option params [required, String] :sequence_store_id
2516
+ # The jobs' sequence store ID.
2267
2517
  #
2268
2518
  # @option params [Integer] :max_results
2269
2519
  # The maximum number of jobs to return in one page of results.
@@ -2272,39 +2522,39 @@ module Aws::Omics
2272
2522
  # Specify the pagination token from a previous request to retrieve the
2273
2523
  # next page of results.
2274
2524
  #
2275
- # @option params [required, String] :sequence_store_id
2276
- # The jobs' sequence store ID.
2525
+ # @option params [Types::ExportReadSetFilter] :filter
2526
+ # A filter to apply to the list.
2277
2527
  #
2278
2528
  # @return [Types::ListReadSetExportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2279
2529
  #
2280
- # * {Types::ListReadSetExportJobsResponse#export_jobs #export_jobs} => Array&lt;Types::ExportReadSetJobDetail&gt;
2281
2530
  # * {Types::ListReadSetExportJobsResponse#next_token #next_token} => String
2531
+ # * {Types::ListReadSetExportJobsResponse#export_jobs #export_jobs} => Array&lt;Types::ExportReadSetJobDetail&gt;
2282
2532
  #
2283
2533
  # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2284
2534
  #
2285
2535
  # @example Request syntax with placeholder values
2286
2536
  #
2287
2537
  # resp = client.list_read_set_export_jobs({
2538
+ # sequence_store_id: "SequenceStoreId", # required
2539
+ # max_results: 1,
2540
+ # next_token: "NextToken",
2288
2541
  # filter: {
2542
+ # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2289
2543
  # created_after: Time.now,
2290
2544
  # created_before: Time.now,
2291
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2292
2545
  # },
2293
- # max_results: 1,
2294
- # next_token: "NextToken",
2295
- # sequence_store_id: "SequenceStoreId", # required
2296
2546
  # })
2297
2547
  #
2298
2548
  # @example Response structure
2299
2549
  #
2550
+ # resp.next_token #=> String
2300
2551
  # resp.export_jobs #=> Array
2301
- # resp.export_jobs[0].completion_time #=> Time
2302
- # resp.export_jobs[0].creation_time #=> Time
2303
- # resp.export_jobs[0].destination #=> String
2304
2552
  # resp.export_jobs[0].id #=> String
2305
2553
  # resp.export_jobs[0].sequence_store_id #=> String
2554
+ # resp.export_jobs[0].destination #=> String
2306
2555
  # resp.export_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
2307
- # resp.next_token #=> String
2556
+ # resp.export_jobs[0].creation_time #=> Time
2557
+ # resp.export_jobs[0].completion_time #=> Time
2308
2558
  #
2309
2559
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetExportJobs AWS API Documentation
2310
2560
  #
@@ -2317,9 +2567,6 @@ module Aws::Omics
2317
2567
 
2318
2568
  # Retrieves a list of read set import jobs.
2319
2569
  #
2320
- # @option params [Types::ImportReadSetFilter] :filter
2321
- # A filter to apply to the list.
2322
- #
2323
2570
  # @option params [Integer] :max_results
2324
2571
  # The maximum number of jobs to return in one page of results.
2325
2572
  #
@@ -2330,36 +2577,39 @@ module Aws::Omics
2330
2577
  # @option params [required, String] :sequence_store_id
2331
2578
  # The jobs' sequence store ID.
2332
2579
  #
2580
+ # @option params [Types::ImportReadSetFilter] :filter
2581
+ # A filter to apply to the list.
2582
+ #
2333
2583
  # @return [Types::ListReadSetImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2334
2584
  #
2335
- # * {Types::ListReadSetImportJobsResponse#import_jobs #import_jobs} => Array&lt;Types::ImportReadSetJobItem&gt;
2336
2585
  # * {Types::ListReadSetImportJobsResponse#next_token #next_token} => String
2586
+ # * {Types::ListReadSetImportJobsResponse#import_jobs #import_jobs} => Array&lt;Types::ImportReadSetJobItem&gt;
2337
2587
  #
2338
2588
  # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2339
2589
  #
2340
2590
  # @example Request syntax with placeholder values
2341
2591
  #
2342
2592
  # resp = client.list_read_set_import_jobs({
2593
+ # max_results: 1,
2594
+ # next_token: "NextToken",
2595
+ # sequence_store_id: "SequenceStoreId", # required
2343
2596
  # filter: {
2597
+ # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2344
2598
  # created_after: Time.now,
2345
2599
  # created_before: Time.now,
2346
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2347
2600
  # },
2348
- # max_results: 1,
2349
- # next_token: "NextToken",
2350
- # sequence_store_id: "SequenceStoreId", # required
2351
2601
  # })
2352
2602
  #
2353
2603
  # @example Response structure
2354
2604
  #
2605
+ # resp.next_token #=> String
2355
2606
  # resp.import_jobs #=> Array
2356
- # resp.import_jobs[0].completion_time #=> Time
2357
- # resp.import_jobs[0].creation_time #=> Time
2358
2607
  # resp.import_jobs[0].id #=> String
2359
- # resp.import_jobs[0].role_arn #=> String
2360
2608
  # resp.import_jobs[0].sequence_store_id #=> String
2609
+ # resp.import_jobs[0].role_arn #=> String
2361
2610
  # resp.import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
2362
- # resp.next_token #=> String
2611
+ # resp.import_jobs[0].creation_time #=> Time
2612
+ # resp.import_jobs[0].completion_time #=> Time
2363
2613
  #
2364
2614
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetImportJobs AWS API Documentation
2365
2615
  #
@@ -2370,10 +2620,75 @@ module Aws::Omics
2370
2620
  req.send_request(options)
2371
2621
  end
2372
2622
 
2623
+ # This operation will list all parts in a requested multipart upload for
2624
+ # a sequence store.
2625
+ #
2626
+ # @option params [required, String] :sequence_store_id
2627
+ # The Sequence Store ID used for the multipart uploads.
2628
+ #
2629
+ # @option params [required, String] :upload_id
2630
+ # The ID for the initiated multipart upload.
2631
+ #
2632
+ # @option params [required, String] :part_source
2633
+ # The source file for the upload part.
2634
+ #
2635
+ # @option params [Integer] :max_results
2636
+ # The maximum number of read set upload parts returned in a page.
2637
+ #
2638
+ # @option params [String] :next_token
2639
+ # Next token returned in the response of a previous
2640
+ # ListReadSetUploadPartsRequest call. Used to get the next page of
2641
+ # results.
2642
+ #
2643
+ # @option params [Types::ReadSetUploadPartListFilter] :filter
2644
+ # Attributes used to filter for a specific subset of read set part
2645
+ # uploads.
2646
+ #
2647
+ # @return [Types::ListReadSetUploadPartsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2648
+ #
2649
+ # * {Types::ListReadSetUploadPartsResponse#next_token #next_token} => String
2650
+ # * {Types::ListReadSetUploadPartsResponse#parts #parts} => Array&lt;Types::ReadSetUploadPartListItem&gt;
2651
+ #
2652
+ # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2653
+ #
2654
+ # @example Request syntax with placeholder values
2655
+ #
2656
+ # resp = client.list_read_set_upload_parts({
2657
+ # sequence_store_id: "SequenceStoreId", # required
2658
+ # upload_id: "UploadId", # required
2659
+ # part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2
2660
+ # max_results: 1,
2661
+ # next_token: "NextToken",
2662
+ # filter: {
2663
+ # created_after: Time.now,
2664
+ # created_before: Time.now,
2665
+ # },
2666
+ # })
2667
+ #
2668
+ # @example Response structure
2669
+ #
2670
+ # resp.next_token #=> String
2671
+ # resp.parts #=> Array
2672
+ # resp.parts[0].part_number #=> Integer
2673
+ # resp.parts[0].part_size #=> Integer
2674
+ # resp.parts[0].part_source #=> String, one of "SOURCE1", "SOURCE2"
2675
+ # resp.parts[0].checksum #=> String
2676
+ # resp.parts[0].creation_time #=> Time
2677
+ # resp.parts[0].last_updated_time #=> Time
2678
+ #
2679
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetUploadParts AWS API Documentation
2680
+ #
2681
+ # @overload list_read_set_upload_parts(params = {})
2682
+ # @param [Hash] params ({})
2683
+ def list_read_set_upload_parts(params = {}, options = {})
2684
+ req = build_request(:list_read_set_upload_parts, params)
2685
+ req.send_request(options)
2686
+ end
2687
+
2373
2688
  # Retrieves a list of read sets.
2374
2689
  #
2375
- # @option params [Types::ReadSetFilter] :filter
2376
- # A filter to apply to the list.
2690
+ # @option params [required, String] :sequence_store_id
2691
+ # The jobs' sequence store ID.
2377
2692
  #
2378
2693
  # @option params [Integer] :max_results
2379
2694
  # The maximum number of read sets to return in one page of results.
@@ -2382,8 +2697,8 @@ module Aws::Omics
2382
2697
  # Specify the pagination token from a previous request to retrieve the
2383
2698
  # next page of results.
2384
2699
  #
2385
- # @option params [required, String] :sequence_store_id
2386
- # The jobs' sequence store ID.
2700
+ # @option params [Types::ReadSetFilter] :filter
2701
+ # A filter to apply to the list.
2387
2702
  #
2388
2703
  # @return [Types::ListReadSetsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2389
2704
  #
@@ -2395,37 +2710,41 @@ module Aws::Omics
2395
2710
  # @example Request syntax with placeholder values
2396
2711
  #
2397
2712
  # resp = client.list_read_sets({
2713
+ # sequence_store_id: "SequenceStoreId", # required
2714
+ # max_results: 1,
2715
+ # next_token: "NextToken",
2398
2716
  # filter: {
2399
- # created_after: Time.now,
2400
- # created_before: Time.now,
2401
2717
  # name: "ReadSetName",
2718
+ # status: "ARCHIVED", # accepts ARCHIVED, ACTIVATING, ACTIVE, DELETING, DELETED, PROCESSING_UPLOAD, UPLOAD_FAILED
2402
2719
  # reference_arn: "ReferenceArn",
2403
- # status: "ARCHIVED", # accepts ARCHIVED, ACTIVATING, ACTIVE, DELETING, DELETED
2720
+ # created_after: Time.now,
2721
+ # created_before: Time.now,
2722
+ # sample_id: "SampleId",
2723
+ # subject_id: "SubjectId",
2724
+ # generated_from: "GeneratedFrom",
2404
2725
  # },
2405
- # max_results: 1,
2406
- # next_token: "NextToken",
2407
- # sequence_store_id: "SequenceStoreId", # required
2408
2726
  # })
2409
2727
  #
2410
2728
  # @example Response structure
2411
2729
  #
2412
2730
  # resp.next_token #=> String
2413
2731
  # resp.read_sets #=> Array
2414
- # resp.read_sets[0].arn #=> String
2415
- # resp.read_sets[0].creation_time #=> Time
2416
- # resp.read_sets[0].description #=> String
2417
- # resp.read_sets[0].file_type #=> String, one of "FASTQ", "BAM", "CRAM"
2418
2732
  # resp.read_sets[0].id #=> String
2733
+ # resp.read_sets[0].arn #=> String
2734
+ # resp.read_sets[0].sequence_store_id #=> String
2735
+ # resp.read_sets[0].subject_id #=> String
2736
+ # resp.read_sets[0].sample_id #=> String
2737
+ # resp.read_sets[0].status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "PROCESSING_UPLOAD", "UPLOAD_FAILED"
2419
2738
  # resp.read_sets[0].name #=> String
2739
+ # resp.read_sets[0].description #=> String
2420
2740
  # resp.read_sets[0].reference_arn #=> String
2421
- # resp.read_sets[0].sample_id #=> String
2422
- # resp.read_sets[0].sequence_information.alignment #=> String
2423
- # resp.read_sets[0].sequence_information.generated_from #=> String
2424
- # resp.read_sets[0].sequence_information.total_base_count #=> Integer
2741
+ # resp.read_sets[0].file_type #=> String, one of "FASTQ", "BAM", "CRAM"
2425
2742
  # resp.read_sets[0].sequence_information.total_read_count #=> Integer
2426
- # resp.read_sets[0].sequence_store_id #=> String
2427
- # resp.read_sets[0].status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED"
2428
- # resp.read_sets[0].subject_id #=> String
2743
+ # resp.read_sets[0].sequence_information.total_base_count #=> Integer
2744
+ # resp.read_sets[0].sequence_information.generated_from #=> String
2745
+ # resp.read_sets[0].sequence_information.alignment #=> String
2746
+ # resp.read_sets[0].creation_time #=> Time
2747
+ # resp.read_sets[0].status_message #=> String
2429
2748
  #
2430
2749
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSets AWS API Documentation
2431
2750
  #
@@ -2438,9 +2757,6 @@ module Aws::Omics
2438
2757
 
2439
2758
  # Retrieves a list of reference import jobs.
2440
2759
  #
2441
- # @option params [Types::ImportReferenceFilter] :filter
2442
- # A filter to apply to the list.
2443
- #
2444
2760
  # @option params [Integer] :max_results
2445
2761
  # The maximum number of jobs to return in one page of results.
2446
2762
  #
@@ -2451,36 +2767,39 @@ module Aws::Omics
2451
2767
  # @option params [required, String] :reference_store_id
2452
2768
  # The job's reference store ID.
2453
2769
  #
2770
+ # @option params [Types::ImportReferenceFilter] :filter
2771
+ # A filter to apply to the list.
2772
+ #
2454
2773
  # @return [Types::ListReferenceImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2455
2774
  #
2456
- # * {Types::ListReferenceImportJobsResponse#import_jobs #import_jobs} => Array&lt;Types::ImportReferenceJobItem&gt;
2457
2775
  # * {Types::ListReferenceImportJobsResponse#next_token #next_token} => String
2776
+ # * {Types::ListReferenceImportJobsResponse#import_jobs #import_jobs} => Array&lt;Types::ImportReferenceJobItem&gt;
2458
2777
  #
2459
2778
  # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2460
2779
  #
2461
2780
  # @example Request syntax with placeholder values
2462
2781
  #
2463
2782
  # resp = client.list_reference_import_jobs({
2783
+ # max_results: 1,
2784
+ # next_token: "NextToken",
2785
+ # reference_store_id: "ReferenceStoreId", # required
2464
2786
  # filter: {
2787
+ # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2465
2788
  # created_after: Time.now,
2466
2789
  # created_before: Time.now,
2467
- # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES
2468
2790
  # },
2469
- # max_results: 1,
2470
- # next_token: "NextToken",
2471
- # reference_store_id: "ReferenceStoreId", # required
2472
2791
  # })
2473
2792
  #
2474
2793
  # @example Response structure
2475
2794
  #
2795
+ # resp.next_token #=> String
2476
2796
  # resp.import_jobs #=> Array
2477
- # resp.import_jobs[0].completion_time #=> Time
2478
- # resp.import_jobs[0].creation_time #=> Time
2479
2797
  # resp.import_jobs[0].id #=> String
2480
2798
  # resp.import_jobs[0].reference_store_id #=> String
2481
2799
  # resp.import_jobs[0].role_arn #=> String
2482
2800
  # resp.import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
2483
- # resp.next_token #=> String
2801
+ # resp.import_jobs[0].creation_time #=> Time
2802
+ # resp.import_jobs[0].completion_time #=> Time
2484
2803
  #
2485
2804
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferenceImportJobs AWS API Documentation
2486
2805
  #
@@ -2493,9 +2812,6 @@ module Aws::Omics
2493
2812
 
2494
2813
  # Retrieves a list of reference stores.
2495
2814
  #
2496
- # @option params [Types::ReferenceStoreFilter] :filter
2497
- # A filter to apply to the list.
2498
- #
2499
2815
  # @option params [Integer] :max_results
2500
2816
  # The maximum number of stores to return in one page of results.
2501
2817
  #
@@ -2503,6 +2819,9 @@ module Aws::Omics
2503
2819
  # Specify the pagination token from a previous request to retrieve the
2504
2820
  # next page of results.
2505
2821
  #
2822
+ # @option params [Types::ReferenceStoreFilter] :filter
2823
+ # A filter to apply to the list.
2824
+ #
2506
2825
  # @return [Types::ListReferenceStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2507
2826
  #
2508
2827
  # * {Types::ListReferenceStoresResponse#next_token #next_token} => String
@@ -2513,13 +2832,13 @@ module Aws::Omics
2513
2832
  # @example Request syntax with placeholder values
2514
2833
  #
2515
2834
  # resp = client.list_reference_stores({
2835
+ # max_results: 1,
2836
+ # next_token: "NextToken",
2516
2837
  # filter: {
2838
+ # name: "ReferenceStoreName",
2517
2839
  # created_after: Time.now,
2518
2840
  # created_before: Time.now,
2519
- # name: "ReferenceStoreName",
2520
2841
  # },
2521
- # max_results: 1,
2522
- # next_token: "NextToken",
2523
2842
  # })
2524
2843
  #
2525
2844
  # @example Response structure
@@ -2527,12 +2846,12 @@ module Aws::Omics
2527
2846
  # resp.next_token #=> String
2528
2847
  # resp.reference_stores #=> Array
2529
2848
  # resp.reference_stores[0].arn #=> String
2530
- # resp.reference_stores[0].creation_time #=> Time
2531
- # resp.reference_stores[0].description #=> String
2532
2849
  # resp.reference_stores[0].id #=> String
2533
2850
  # resp.reference_stores[0].name #=> String
2534
- # resp.reference_stores[0].sse_config.key_arn #=> String
2851
+ # resp.reference_stores[0].description #=> String
2535
2852
  # resp.reference_stores[0].sse_config.type #=> String, one of "KMS"
2853
+ # resp.reference_stores[0].sse_config.key_arn #=> String
2854
+ # resp.reference_stores[0].creation_time #=> Time
2536
2855
  #
2537
2856
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferenceStores AWS API Documentation
2538
2857
  #
@@ -2545,8 +2864,8 @@ module Aws::Omics
2545
2864
 
2546
2865
  # Retrieves a list of references.
2547
2866
  #
2548
- # @option params [Types::ReferenceFilter] :filter
2549
- # A filter to apply to the list.
2867
+ # @option params [required, String] :reference_store_id
2868
+ # The references' reference store ID.
2550
2869
  #
2551
2870
  # @option params [Integer] :max_results
2552
2871
  # The maximum number of references to return in one page of results.
@@ -2555,8 +2874,8 @@ module Aws::Omics
2555
2874
  # Specify the pagination token from a previous request to retrieve the
2556
2875
  # next page of results.
2557
2876
  #
2558
- # @option params [required, String] :reference_store_id
2559
- # The references' reference store ID.
2877
+ # @option params [Types::ReferenceFilter] :filter
2878
+ # A filter to apply to the list.
2560
2879
  #
2561
2880
  # @return [Types::ListReferencesResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2562
2881
  #
@@ -2568,29 +2887,29 @@ module Aws::Omics
2568
2887
  # @example Request syntax with placeholder values
2569
2888
  #
2570
2889
  # resp = client.list_references({
2890
+ # reference_store_id: "ReferenceStoreId", # required
2891
+ # max_results: 1,
2892
+ # next_token: "NextToken",
2571
2893
  # filter: {
2894
+ # name: "ReferenceName",
2895
+ # md5: "Md5",
2572
2896
  # created_after: Time.now,
2573
2897
  # created_before: Time.now,
2574
- # md5: "Md5",
2575
- # name: "ReferenceName",
2576
2898
  # },
2577
- # max_results: 1,
2578
- # next_token: "NextToken",
2579
- # reference_store_id: "ReferenceStoreId", # required
2580
2899
  # })
2581
2900
  #
2582
2901
  # @example Response structure
2583
2902
  #
2584
2903
  # resp.next_token #=> String
2585
2904
  # resp.references #=> Array
2586
- # resp.references[0].arn #=> String
2587
- # resp.references[0].creation_time #=> Time
2588
- # resp.references[0].description #=> String
2589
2905
  # resp.references[0].id #=> String
2590
- # resp.references[0].md5 #=> String
2591
- # resp.references[0].name #=> String
2906
+ # resp.references[0].arn #=> String
2592
2907
  # resp.references[0].reference_store_id #=> String
2908
+ # resp.references[0].md5 #=> String
2593
2909
  # resp.references[0].status #=> String, one of "ACTIVE", "DELETING", "DELETED"
2910
+ # resp.references[0].name #=> String
2911
+ # resp.references[0].description #=> String
2912
+ # resp.references[0].creation_time #=> Time
2594
2913
  # resp.references[0].update_time #=> Time
2595
2914
  #
2596
2915
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferences AWS API Documentation
@@ -2604,9 +2923,6 @@ module Aws::Omics
2604
2923
 
2605
2924
  # Retrieves a list of run groups.
2606
2925
  #
2607
- # @option params [Integer] :max_results
2608
- # The maximum number of run groups to return in one page of results.
2609
- #
2610
2926
  # @option params [String] :name
2611
2927
  # The run groups' name.
2612
2928
  #
@@ -2614,6 +2930,9 @@ module Aws::Omics
2614
2930
  # Specify the pagination token from a previous request to retrieve the
2615
2931
  # next page of results.
2616
2932
  #
2933
+ # @option params [Integer] :max_results
2934
+ # The maximum number of run groups to return in one page of results.
2935
+ #
2617
2936
  # @return [Types::ListRunGroupsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2618
2937
  #
2619
2938
  # * {Types::ListRunGroupsResponse#items #items} => Array&lt;Types::RunGroupListItem&gt;
@@ -2624,21 +2943,22 @@ module Aws::Omics
2624
2943
  # @example Request syntax with placeholder values
2625
2944
  #
2626
2945
  # resp = client.list_run_groups({
2627
- # max_results: 1,
2628
2946
  # name: "RunGroupName",
2629
2947
  # starting_token: "RunGroupListToken",
2948
+ # max_results: 1,
2630
2949
  # })
2631
2950
  #
2632
2951
  # @example Response structure
2633
2952
  #
2634
2953
  # resp.items #=> Array
2635
2954
  # resp.items[0].arn #=> String
2636
- # resp.items[0].creation_time #=> Time
2637
2955
  # resp.items[0].id #=> String
2956
+ # resp.items[0].name #=> String
2638
2957
  # resp.items[0].max_cpus #=> Integer
2639
- # resp.items[0].max_duration #=> Integer
2640
2958
  # resp.items[0].max_runs #=> Integer
2641
- # resp.items[0].name #=> String
2959
+ # resp.items[0].max_duration #=> Integer
2960
+ # resp.items[0].creation_time #=> Time
2961
+ # resp.items[0].max_gpus #=> Integer
2642
2962
  # resp.next_token #=> String
2643
2963
  #
2644
2964
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunGroups AWS API Documentation
@@ -2655,15 +2975,15 @@ module Aws::Omics
2655
2975
  # @option params [required, String] :id
2656
2976
  # The run's ID.
2657
2977
  #
2658
- # @option params [Integer] :max_results
2659
- # The maximum number of run tasks to return in one page of results.
2978
+ # @option params [String] :status
2979
+ # Filter the list by status.
2660
2980
  #
2661
2981
  # @option params [String] :starting_token
2662
2982
  # Specify the pagination token from a previous request to retrieve the
2663
2983
  # next page of results.
2664
2984
  #
2665
- # @option params [String] :status
2666
- # Filter the list by status.
2985
+ # @option params [Integer] :max_results
2986
+ # The maximum number of run tasks to return in one page of results.
2667
2987
  #
2668
2988
  # @return [Types::ListRunTasksResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2669
2989
  #
@@ -2676,22 +2996,23 @@ module Aws::Omics
2676
2996
  #
2677
2997
  # resp = client.list_run_tasks({
2678
2998
  # id: "RunId", # required
2679
- # max_results: 1,
2680
- # starting_token: "TaskListToken",
2681
2999
  # status: "PENDING", # accepts PENDING, STARTING, RUNNING, STOPPING, COMPLETED, CANCELLED, FAILED
3000
+ # starting_token: "TaskListToken",
3001
+ # max_results: 1,
2682
3002
  # })
2683
3003
  #
2684
3004
  # @example Response structure
2685
3005
  #
2686
3006
  # resp.items #=> Array
3007
+ # resp.items[0].task_id #=> String
3008
+ # resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
3009
+ # resp.items[0].name #=> String
2687
3010
  # resp.items[0].cpus #=> Integer
2688
- # resp.items[0].creation_time #=> Time
2689
3011
  # resp.items[0].memory #=> Integer
2690
- # resp.items[0].name #=> String
3012
+ # resp.items[0].creation_time #=> Time
2691
3013
  # resp.items[0].start_time #=> Time
2692
- # resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED"
2693
3014
  # resp.items[0].stop_time #=> Time
2694
- # resp.items[0].task_id #=> String
3015
+ # resp.items[0].gpus #=> Integer
2695
3016
  # resp.next_token #=> String
2696
3017
  #
2697
3018
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunTasks AWS API Documentation
@@ -2705,9 +3026,6 @@ module Aws::Omics
2705
3026
 
2706
3027
  # Retrieves a list of runs.
2707
3028
  #
2708
- # @option params [Integer] :max_results
2709
- # The maximum number of runs to return in one page of results.
2710
- #
2711
3029
  # @option params [String] :name
2712
3030
  # Filter the list by run name.
2713
3031
  #
@@ -2718,6 +3036,12 @@ module Aws::Omics
2718
3036
  # Specify the pagination token from a previous request to retrieve the
2719
3037
  # next page of results.
2720
3038
  #
3039
+ # @option params [Integer] :max_results
3040
+ # The maximum number of runs to return in one page of results.
3041
+ #
3042
+ # @option params [String] :status
3043
+ # The status of a run.
3044
+ #
2721
3045
  # @return [Types::ListRunsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2722
3046
  #
2723
3047
  # * {Types::ListRunsResponse#items #items} => Array&lt;Types::RunListItem&gt;
@@ -2728,25 +3052,26 @@ module Aws::Omics
2728
3052
  # @example Request syntax with placeholder values
2729
3053
  #
2730
3054
  # resp = client.list_runs({
2731
- # max_results: 1,
2732
3055
  # name: "RunName",
2733
3056
  # run_group_id: "RunGroupId",
2734
3057
  # starting_token: "RunListToken",
3058
+ # max_results: 1,
3059
+ # status: "PENDING", # accepts PENDING, STARTING, RUNNING, STOPPING, COMPLETED, DELETED, CANCELLED, FAILED
2735
3060
  # })
2736
3061
  #
2737
3062
  # @example Response structure
2738
3063
  #
2739
3064
  # resp.items #=> Array
2740
3065
  # resp.items[0].arn #=> String
2741
- # resp.items[0].creation_time #=> Time
2742
3066
  # resp.items[0].id #=> String
3067
+ # resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
3068
+ # resp.items[0].workflow_id #=> String
2743
3069
  # resp.items[0].name #=> String
2744
3070
  # resp.items[0].priority #=> Integer
3071
+ # resp.items[0].storage_capacity #=> Integer
3072
+ # resp.items[0].creation_time #=> Time
2745
3073
  # resp.items[0].start_time #=> Time
2746
- # resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED"
2747
3074
  # resp.items[0].stop_time #=> Time
2748
- # resp.items[0].storage_capacity #=> Integer
2749
- # resp.items[0].workflow_id #=> String
2750
3075
  # resp.next_token #=> String
2751
3076
  #
2752
3077
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRuns AWS API Documentation
@@ -2760,9 +3085,6 @@ module Aws::Omics
2760
3085
 
2761
3086
  # Retrieves a list of sequence stores.
2762
3087
  #
2763
- # @option params [Types::SequenceStoreFilter] :filter
2764
- # A filter to apply to the list.
2765
- #
2766
3088
  # @option params [Integer] :max_results
2767
3089
  # The maximum number of stores to return in one page of results.
2768
3090
  #
@@ -2770,6 +3092,9 @@ module Aws::Omics
2770
3092
  # Specify the pagination token from a previous request to retrieve the
2771
3093
  # next page of results.
2772
3094
  #
3095
+ # @option params [Types::SequenceStoreFilter] :filter
3096
+ # A filter to apply to the list.
3097
+ #
2773
3098
  # @return [Types::ListSequenceStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2774
3099
  #
2775
3100
  # * {Types::ListSequenceStoresResponse#next_token #next_token} => String
@@ -2780,13 +3105,13 @@ module Aws::Omics
2780
3105
  # @example Request syntax with placeholder values
2781
3106
  #
2782
3107
  # resp = client.list_sequence_stores({
3108
+ # max_results: 1,
3109
+ # next_token: "NextToken",
2783
3110
  # filter: {
3111
+ # name: "SequenceStoreName",
2784
3112
  # created_after: Time.now,
2785
3113
  # created_before: Time.now,
2786
- # name: "SequenceStoreName",
2787
3114
  # },
2788
- # max_results: 1,
2789
- # next_token: "NextToken",
2790
3115
  # })
2791
3116
  #
2792
3117
  # @example Response structure
@@ -2794,12 +3119,13 @@ module Aws::Omics
2794
3119
  # resp.next_token #=> String
2795
3120
  # resp.sequence_stores #=> Array
2796
3121
  # resp.sequence_stores[0].arn #=> String
2797
- # resp.sequence_stores[0].creation_time #=> Time
2798
- # resp.sequence_stores[0].description #=> String
2799
3122
  # resp.sequence_stores[0].id #=> String
2800
3123
  # resp.sequence_stores[0].name #=> String
2801
- # resp.sequence_stores[0].sse_config.key_arn #=> String
3124
+ # resp.sequence_stores[0].description #=> String
2802
3125
  # resp.sequence_stores[0].sse_config.type #=> String, one of "KMS"
3126
+ # resp.sequence_stores[0].sse_config.key_arn #=> String
3127
+ # resp.sequence_stores[0].creation_time #=> Time
3128
+ # resp.sequence_stores[0].fallback_location #=> String
2803
3129
  #
2804
3130
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListSequenceStores AWS API Documentation
2805
3131
  #
@@ -2841,50 +3167,52 @@ module Aws::Omics
2841
3167
 
2842
3168
  # Retrieves a list of variant import jobs.
2843
3169
  #
2844
- # @option params [Types::ListVariantImportJobsFilter] :filter
2845
- # A filter to apply to the list.
3170
+ # @option params [Integer] :max_results
3171
+ # The maximum number of import jobs to return in one page of results.
2846
3172
  #
2847
3173
  # @option params [Array<String>] :ids
2848
3174
  # A list of job IDs.
2849
3175
  #
2850
- # @option params [Integer] :max_results
2851
- # The maximum number of import jobs to return in one page of results.
2852
- #
2853
3176
  # @option params [String] :next_token
2854
3177
  # Specify the pagination token from a previous request to retrieve the
2855
3178
  # next page of results.
2856
3179
  #
3180
+ # @option params [Types::ListVariantImportJobsFilter] :filter
3181
+ # A filter to apply to the list.
3182
+ #
2857
3183
  # @return [Types::ListVariantImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2858
3184
  #
2859
- # * {Types::ListVariantImportJobsResponse#next_token #next_token} => String
2860
3185
  # * {Types::ListVariantImportJobsResponse#variant_import_jobs #variant_import_jobs} => Array&lt;Types::VariantImportJobItem&gt;
3186
+ # * {Types::ListVariantImportJobsResponse#next_token #next_token} => String
2861
3187
  #
2862
3188
  # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2863
3189
  #
2864
3190
  # @example Request syntax with placeholder values
2865
3191
  #
2866
3192
  # resp = client.list_variant_import_jobs({
3193
+ # max_results: 1,
3194
+ # ids: ["ResourceIdentifier"],
3195
+ # next_token: "ListVariantImportJobsRequestNextTokenString",
2867
3196
  # filter: {
2868
3197
  # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED, COMPLETED_WITH_FAILURES
2869
3198
  # store_name: "String",
2870
3199
  # },
2871
- # ids: ["ResourceIdentifier"],
2872
- # max_results: 1,
2873
- # next_token: "ListVariantImportJobsRequestNextTokenString",
2874
3200
  # })
2875
3201
  #
2876
3202
  # @example Response structure
2877
3203
  #
2878
- # resp.next_token #=> String
2879
3204
  # resp.variant_import_jobs #=> Array
2880
- # resp.variant_import_jobs[0].completion_time #=> Time
2881
- # resp.variant_import_jobs[0].creation_time #=> Time
2882
- # resp.variant_import_jobs[0].destination_name #=> String
2883
3205
  # resp.variant_import_jobs[0].id #=> String
3206
+ # resp.variant_import_jobs[0].destination_name #=> String
2884
3207
  # resp.variant_import_jobs[0].role_arn #=> String
2885
- # resp.variant_import_jobs[0].run_left_normalization #=> Boolean
2886
3208
  # resp.variant_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
3209
+ # resp.variant_import_jobs[0].creation_time #=> Time
2887
3210
  # resp.variant_import_jobs[0].update_time #=> Time
3211
+ # resp.variant_import_jobs[0].completion_time #=> Time
3212
+ # resp.variant_import_jobs[0].run_left_normalization #=> Boolean
3213
+ # resp.variant_import_jobs[0].annotation_fields #=> Hash
3214
+ # resp.variant_import_jobs[0].annotation_fields["AnnotationFieldMapKeyString"] #=> String
3215
+ # resp.next_token #=> String
2888
3216
  #
2889
3217
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListVariantImportJobs AWS API Documentation
2890
3218
  #
@@ -2897,53 +3225,53 @@ module Aws::Omics
2897
3225
 
2898
3226
  # Retrieves a list of variant stores.
2899
3227
  #
2900
- # @option params [Types::ListVariantStoresFilter] :filter
2901
- # A filter to apply to the list.
3228
+ # @option params [Integer] :max_results
3229
+ # The maximum number of stores to return in one page of results.
2902
3230
  #
2903
3231
  # @option params [Array<String>] :ids
2904
3232
  # A list of store IDs.
2905
3233
  #
2906
- # @option params [Integer] :max_results
2907
- # The maximum number of stores to return in one page of results.
2908
- #
2909
3234
  # @option params [String] :next_token
2910
3235
  # Specify the pagination token from a previous request to retrieve the
2911
3236
  # next page of results.
2912
3237
  #
3238
+ # @option params [Types::ListVariantStoresFilter] :filter
3239
+ # A filter to apply to the list.
3240
+ #
2913
3241
  # @return [Types::ListVariantStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2914
3242
  #
2915
- # * {Types::ListVariantStoresResponse#next_token #next_token} => String
2916
3243
  # * {Types::ListVariantStoresResponse#variant_stores #variant_stores} => Array&lt;Types::VariantStoreItem&gt;
3244
+ # * {Types::ListVariantStoresResponse#next_token #next_token} => String
2917
3245
  #
2918
3246
  # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
2919
3247
  #
2920
3248
  # @example Request syntax with placeholder values
2921
3249
  #
2922
3250
  # resp = client.list_variant_stores({
3251
+ # max_results: 1,
3252
+ # ids: ["ResourceIdentifier"],
3253
+ # next_token: "ListVariantStoresRequestNextTokenString",
2923
3254
  # filter: {
2924
3255
  # status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
2925
3256
  # },
2926
- # ids: ["ResourceIdentifier"],
2927
- # max_results: 1,
2928
- # next_token: "ListVariantStoresRequestNextTokenString",
2929
3257
  # })
2930
3258
  #
2931
3259
  # @example Response structure
2932
3260
  #
2933
- # resp.next_token #=> String
2934
3261
  # resp.variant_stores #=> Array
2935
- # resp.variant_stores[0].creation_time #=> Time
2936
- # resp.variant_stores[0].description #=> String
2937
3262
  # resp.variant_stores[0].id #=> String
2938
- # resp.variant_stores[0].name #=> String
2939
3263
  # resp.variant_stores[0].reference.reference_arn #=> String
2940
- # resp.variant_stores[0].sse_config.key_arn #=> String
2941
- # resp.variant_stores[0].sse_config.type #=> String, one of "KMS"
2942
3264
  # resp.variant_stores[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
2943
- # resp.variant_stores[0].status_message #=> String
2944
3265
  # resp.variant_stores[0].store_arn #=> String
2945
- # resp.variant_stores[0].store_size_bytes #=> Integer
3266
+ # resp.variant_stores[0].name #=> String
3267
+ # resp.variant_stores[0].description #=> String
3268
+ # resp.variant_stores[0].sse_config.type #=> String, one of "KMS"
3269
+ # resp.variant_stores[0].sse_config.key_arn #=> String
3270
+ # resp.variant_stores[0].creation_time #=> Time
2946
3271
  # resp.variant_stores[0].update_time #=> Time
3272
+ # resp.variant_stores[0].status_message #=> String
3273
+ # resp.variant_stores[0].store_size_bytes #=> Integer
3274
+ # resp.next_token #=> String
2947
3275
  #
2948
3276
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListVariantStores AWS API Documentation
2949
3277
  #
@@ -2956,8 +3284,8 @@ module Aws::Omics
2956
3284
 
2957
3285
  # Retrieves a list of workflows.
2958
3286
  #
2959
- # @option params [Integer] :max_results
2960
- # The maximum number of workflows to return in one page of results.
3287
+ # @option params [String] :type
3288
+ # The workflows' type.
2961
3289
  #
2962
3290
  # @option params [String] :name
2963
3291
  # The workflows' name.
@@ -2966,8 +3294,8 @@ module Aws::Omics
2966
3294
  # Specify the pagination token from a previous request to retrieve the
2967
3295
  # next page of results.
2968
3296
  #
2969
- # @option params [String] :type
2970
- # The workflows' type.
3297
+ # @option params [Integer] :max_results
3298
+ # The maximum number of workflows to return in one page of results.
2971
3299
  #
2972
3300
  # @return [Types::ListWorkflowsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
2973
3301
  #
@@ -2979,22 +3307,24 @@ module Aws::Omics
2979
3307
  # @example Request syntax with placeholder values
2980
3308
  #
2981
3309
  # resp = client.list_workflows({
2982
- # max_results: 1,
3310
+ # type: "PRIVATE", # accepts PRIVATE, READY2RUN
2983
3311
  # name: "WorkflowName",
2984
3312
  # starting_token: "WorkflowListToken",
2985
- # type: "PRIVATE", # accepts PRIVATE
3313
+ # max_results: 1,
2986
3314
  # })
2987
3315
  #
2988
3316
  # @example Response structure
2989
3317
  #
2990
3318
  # resp.items #=> Array
2991
3319
  # resp.items[0].arn #=> String
2992
- # resp.items[0].creation_time #=> Time
2993
- # resp.items[0].digest #=> String
2994
3320
  # resp.items[0].id #=> String
2995
3321
  # resp.items[0].name #=> String
2996
- # resp.items[0].status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED"
2997
- # resp.items[0].type #=> String, one of "PRIVATE"
3322
+ # resp.items[0].status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE"
3323
+ # resp.items[0].type #=> String, one of "PRIVATE", "READY2RUN"
3324
+ # resp.items[0].digest #=> String
3325
+ # resp.items[0].creation_time #=> Time
3326
+ # resp.items[0].metadata #=> Hash
3327
+ # resp.items[0].metadata["WorkflowMetadataKey"] #=> String
2998
3328
  # resp.next_token #=> String
2999
3329
  #
3000
3330
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListWorkflows AWS API Documentation
@@ -3011,18 +3341,21 @@ module Aws::Omics
3011
3341
  # @option params [required, String] :destination_name
3012
3342
  # A destination annotation store for the job.
3013
3343
  #
3014
- # @option params [Types::FormatOptions] :format_options
3015
- # Formatting options for the annotation file.
3344
+ # @option params [required, String] :role_arn
3345
+ # A service role for the job.
3016
3346
  #
3017
3347
  # @option params [required, Array<Types::AnnotationImportItemSource>] :items
3018
3348
  # Items to import.
3019
3349
  #
3020
- # @option params [required, String] :role_arn
3021
- # A service role for the job.
3350
+ # @option params [Types::FormatOptions] :format_options
3351
+ # Formatting options for the annotation file.
3022
3352
  #
3023
3353
  # @option params [Boolean] :run_left_normalization
3024
3354
  # The job's left normalization setting.
3025
3355
  #
3356
+ # @option params [Hash<String,String>] :annotation_fields
3357
+ # The annotation schema generated by the parsed annotation data.
3358
+ #
3026
3359
  # @return [Types::StartAnnotationImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3027
3360
  #
3028
3361
  # * {Types::StartAnnotationImportResponse#job_id #job_id} => String
@@ -3031,32 +3364,35 @@ module Aws::Omics
3031
3364
  #
3032
3365
  # resp = client.start_annotation_import_job({
3033
3366
  # destination_name: "StoreName", # required
3367
+ # role_arn: "Arn", # required
3368
+ # items: [ # required
3369
+ # {
3370
+ # source: "S3Uri", # required
3371
+ # },
3372
+ # ],
3034
3373
  # format_options: {
3035
3374
  # tsv_options: {
3036
3375
  # read_options: {
3037
- # comment: "CommentChar",
3376
+ # sep: "Separator",
3038
3377
  # encoding: "Encoding",
3378
+ # quote: "Quote",
3379
+ # quote_all: false,
3039
3380
  # escape: "EscapeChar",
3040
3381
  # escape_quotes: false,
3382
+ # comment: "CommentChar",
3041
3383
  # header: false,
3042
3384
  # line_sep: "LineSep",
3043
- # quote: "Quote",
3044
- # quote_all: false,
3045
- # sep: "Separator",
3046
3385
  # },
3047
3386
  # },
3048
3387
  # vcf_options: {
3049
- # ignore_filter_field: false,
3050
3388
  # ignore_qual_field: false,
3389
+ # ignore_filter_field: false,
3051
3390
  # },
3052
3391
  # },
3053
- # items: [ # required
3054
- # {
3055
- # source: "S3Uri", # required
3056
- # },
3057
- # ],
3058
- # role_arn: "Arn", # required
3059
3392
  # run_left_normalization: false,
3393
+ # annotation_fields: {
3394
+ # "AnnotationFieldMapKeyString" => "AnnotationFieldMapValueString",
3395
+ # },
3060
3396
  # })
3061
3397
  #
3062
3398
  # @example Response structure
@@ -3075,28 +3411,28 @@ module Aws::Omics
3075
3411
  # Activates an archived read set. To reduce storage charges, Amazon
3076
3412
  # Omics archives unused read sets after 30 days.
3077
3413
  #
3078
- # @option params [String] :client_token
3079
- # To ensure that jobs don't run multiple times, specify a unique token
3080
- # for each job.
3081
- #
3082
3414
  # @option params [required, String] :sequence_store_id
3083
3415
  # The read set's sequence store ID.
3084
3416
  #
3417
+ # @option params [String] :client_token
3418
+ # To ensure that jobs don't run multiple times, specify a unique token
3419
+ # for each job.
3420
+ #
3085
3421
  # @option params [required, Array<Types::StartReadSetActivationJobSourceItem>] :sources
3086
3422
  # The job's source files.
3087
3423
  #
3088
3424
  # @return [Types::StartReadSetActivationJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3089
3425
  #
3090
- # * {Types::StartReadSetActivationJobResponse#creation_time #creation_time} => Time
3091
3426
  # * {Types::StartReadSetActivationJobResponse#id #id} => String
3092
3427
  # * {Types::StartReadSetActivationJobResponse#sequence_store_id #sequence_store_id} => String
3093
3428
  # * {Types::StartReadSetActivationJobResponse#status #status} => String
3429
+ # * {Types::StartReadSetActivationJobResponse#creation_time #creation_time} => Time
3094
3430
  #
3095
3431
  # @example Request syntax with placeholder values
3096
3432
  #
3097
3433
  # resp = client.start_read_set_activation_job({
3098
- # client_token: "ClientToken",
3099
3434
  # sequence_store_id: "SequenceStoreId", # required
3435
+ # client_token: "ClientToken",
3100
3436
  # sources: [ # required
3101
3437
  # {
3102
3438
  # read_set_id: "ReadSetId", # required
@@ -3106,10 +3442,10 @@ module Aws::Omics
3106
3442
  #
3107
3443
  # @example Response structure
3108
3444
  #
3109
- # resp.creation_time #=> Time
3110
3445
  # resp.id #=> String
3111
3446
  # resp.sequence_store_id #=> String
3112
3447
  # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
3448
+ # resp.creation_time #=> Time
3113
3449
  #
3114
3450
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetActivationJob AWS API Documentation
3115
3451
  #
@@ -3122,9 +3458,8 @@ module Aws::Omics
3122
3458
 
3123
3459
  # Exports a read set to Amazon S3.
3124
3460
  #
3125
- # @option params [String] :client_token
3126
- # To ensure that jobs don't run multiple times, specify a unique token
3127
- # for each job.
3461
+ # @option params [required, String] :sequence_store_id
3462
+ # The read set's sequence store ID.
3128
3463
  #
3129
3464
  # @option params [required, String] :destination
3130
3465
  # A location for exported files in Amazon S3.
@@ -3132,27 +3467,28 @@ module Aws::Omics
3132
3467
  # @option params [required, String] :role_arn
3133
3468
  # A service role for the job.
3134
3469
  #
3135
- # @option params [required, String] :sequence_store_id
3136
- # The read set's sequence store ID.
3470
+ # @option params [String] :client_token
3471
+ # To ensure that jobs don't run multiple times, specify a unique token
3472
+ # for each job.
3137
3473
  #
3138
3474
  # @option params [required, Array<Types::ExportReadSet>] :sources
3139
3475
  # The job's source files.
3140
3476
  #
3141
3477
  # @return [Types::StartReadSetExportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3142
3478
  #
3143
- # * {Types::StartReadSetExportJobResponse#creation_time #creation_time} => Time
3144
- # * {Types::StartReadSetExportJobResponse#destination #destination} => String
3145
3479
  # * {Types::StartReadSetExportJobResponse#id #id} => String
3146
3480
  # * {Types::StartReadSetExportJobResponse#sequence_store_id #sequence_store_id} => String
3481
+ # * {Types::StartReadSetExportJobResponse#destination #destination} => String
3147
3482
  # * {Types::StartReadSetExportJobResponse#status #status} => String
3483
+ # * {Types::StartReadSetExportJobResponse#creation_time #creation_time} => Time
3148
3484
  #
3149
3485
  # @example Request syntax with placeholder values
3150
3486
  #
3151
3487
  # resp = client.start_read_set_export_job({
3152
- # client_token: "ClientToken",
3488
+ # sequence_store_id: "SequenceStoreId", # required
3153
3489
  # destination: "S3Destination", # required
3154
3490
  # role_arn: "RoleArn", # required
3155
- # sequence_store_id: "SequenceStoreId", # required
3491
+ # client_token: "ClientToken",
3156
3492
  # sources: [ # required
3157
3493
  # {
3158
3494
  # read_set_id: "ReadSetId", # required
@@ -3162,11 +3498,11 @@ module Aws::Omics
3162
3498
  #
3163
3499
  # @example Response structure
3164
3500
  #
3165
- # resp.creation_time #=> Time
3166
- # resp.destination #=> String
3167
3501
  # resp.id #=> String
3168
3502
  # resp.sequence_store_id #=> String
3503
+ # resp.destination #=> String
3169
3504
  # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
3505
+ # resp.creation_time #=> Time
3170
3506
  #
3171
3507
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetExportJob AWS API Documentation
3172
3508
  #
@@ -3179,46 +3515,46 @@ module Aws::Omics
3179
3515
 
3180
3516
  # Starts a read set import job.
3181
3517
  #
3182
- # @option params [String] :client_token
3183
- # To ensure that jobs don't run multiple times, specify a unique token
3184
- # for each job.
3518
+ # @option params [required, String] :sequence_store_id
3519
+ # The read set's sequence store ID.
3185
3520
  #
3186
3521
  # @option params [required, String] :role_arn
3187
3522
  # A service role for the job.
3188
3523
  #
3189
- # @option params [required, String] :sequence_store_id
3190
- # The read set's sequence store ID.
3524
+ # @option params [String] :client_token
3525
+ # To ensure that jobs don't run multiple times, specify a unique token
3526
+ # for each job.
3191
3527
  #
3192
3528
  # @option params [required, Array<Types::StartReadSetImportJobSourceItem>] :sources
3193
3529
  # The job's source files.
3194
3530
  #
3195
3531
  # @return [Types::StartReadSetImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3196
3532
  #
3197
- # * {Types::StartReadSetImportJobResponse#creation_time #creation_time} => Time
3198
3533
  # * {Types::StartReadSetImportJobResponse#id #id} => String
3199
- # * {Types::StartReadSetImportJobResponse#role_arn #role_arn} => String
3200
3534
  # * {Types::StartReadSetImportJobResponse#sequence_store_id #sequence_store_id} => String
3535
+ # * {Types::StartReadSetImportJobResponse#role_arn #role_arn} => String
3201
3536
  # * {Types::StartReadSetImportJobResponse#status #status} => String
3537
+ # * {Types::StartReadSetImportJobResponse#creation_time #creation_time} => Time
3202
3538
  #
3203
3539
  # @example Request syntax with placeholder values
3204
3540
  #
3205
3541
  # resp = client.start_read_set_import_job({
3206
- # client_token: "ClientToken",
3207
- # role_arn: "RoleArn", # required
3208
3542
  # sequence_store_id: "SequenceStoreId", # required
3543
+ # role_arn: "RoleArn", # required
3544
+ # client_token: "ClientToken",
3209
3545
  # sources: [ # required
3210
3546
  # {
3211
- # description: "ReadSetDescription",
3212
- # generated_from: "GeneratedFrom",
3213
- # name: "ReadSetName",
3214
- # reference_arn: "ReferenceArn", # required
3215
- # sample_id: "SampleId", # required
3216
- # source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
3217
3547
  # source_files: { # required
3218
3548
  # source1: "S3Uri", # required
3219
3549
  # source2: "S3Uri",
3220
3550
  # },
3551
+ # source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM
3221
3552
  # subject_id: "SubjectId", # required
3553
+ # sample_id: "SampleId", # required
3554
+ # generated_from: "GeneratedFrom",
3555
+ # reference_arn: "ReferenceArn", # required
3556
+ # name: "ReadSetName",
3557
+ # description: "ReadSetDescription",
3222
3558
  # tags: {
3223
3559
  # "TagKey" => "TagValue",
3224
3560
  # },
@@ -3228,11 +3564,11 @@ module Aws::Omics
3228
3564
  #
3229
3565
  # @example Response structure
3230
3566
  #
3231
- # resp.creation_time #=> Time
3232
3567
  # resp.id #=> String
3233
- # resp.role_arn #=> String
3234
3568
  # resp.sequence_store_id #=> String
3569
+ # resp.role_arn #=> String
3235
3570
  # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
3571
+ # resp.creation_time #=> Time
3236
3572
  #
3237
3573
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetImportJob AWS API Documentation
3238
3574
  #
@@ -3245,38 +3581,38 @@ module Aws::Omics
3245
3581
 
3246
3582
  # Starts a reference import job.
3247
3583
  #
3248
- # @option params [String] :client_token
3249
- # To ensure that jobs don't run multiple times, specify a unique token
3250
- # for each job.
3251
- #
3252
3584
  # @option params [required, String] :reference_store_id
3253
3585
  # The job's reference store ID.
3254
3586
  #
3255
3587
  # @option params [required, String] :role_arn
3256
3588
  # A service role for the job.
3257
3589
  #
3590
+ # @option params [String] :client_token
3591
+ # To ensure that jobs don't run multiple times, specify a unique token
3592
+ # for each job.
3593
+ #
3258
3594
  # @option params [required, Array<Types::StartReferenceImportJobSourceItem>] :sources
3259
3595
  # The job's source files.
3260
3596
  #
3261
3597
  # @return [Types::StartReferenceImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3262
3598
  #
3263
- # * {Types::StartReferenceImportJobResponse#creation_time #creation_time} => Time
3264
3599
  # * {Types::StartReferenceImportJobResponse#id #id} => String
3265
3600
  # * {Types::StartReferenceImportJobResponse#reference_store_id #reference_store_id} => String
3266
3601
  # * {Types::StartReferenceImportJobResponse#role_arn #role_arn} => String
3267
3602
  # * {Types::StartReferenceImportJobResponse#status #status} => String
3603
+ # * {Types::StartReferenceImportJobResponse#creation_time #creation_time} => Time
3268
3604
  #
3269
3605
  # @example Request syntax with placeholder values
3270
3606
  #
3271
3607
  # resp = client.start_reference_import_job({
3272
- # client_token: "ClientToken",
3273
3608
  # reference_store_id: "ReferenceStoreId", # required
3274
3609
  # role_arn: "RoleArn", # required
3610
+ # client_token: "ClientToken",
3275
3611
  # sources: [ # required
3276
3612
  # {
3277
- # description: "ReferenceDescription",
3278
- # name: "ReferenceName", # required
3279
3613
  # source_file: "S3Uri", # required
3614
+ # name: "ReferenceName", # required
3615
+ # description: "ReferenceDescription",
3280
3616
  # tags: {
3281
3617
  # "TagKey" => "TagValue",
3282
3618
  # },
@@ -3286,11 +3622,11 @@ module Aws::Omics
3286
3622
  #
3287
3623
  # @example Response structure
3288
3624
  #
3289
- # resp.creation_time #=> Time
3290
3625
  # resp.id #=> String
3291
3626
  # resp.reference_store_id #=> String
3292
3627
  # resp.role_arn #=> String
3293
3628
  # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES"
3629
+ # resp.creation_time #=> Time
3294
3630
  #
3295
3631
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReferenceImportJob AWS API Documentation
3296
3632
  #
@@ -3303,14 +3639,26 @@ module Aws::Omics
3303
3639
 
3304
3640
  # Starts a run.
3305
3641
  #
3306
- # @option params [String] :log_level
3307
- # A log level for the run.
3642
+ # @option params [String] :workflow_id
3643
+ # The run's workflow ID.
3644
+ #
3645
+ # @option params [String] :workflow_type
3646
+ # The run's workflows type.
3647
+ #
3648
+ # @option params [String] :run_id
3649
+ # The run's ID.
3650
+ #
3651
+ # @option params [required, String] :role_arn
3652
+ # A service role for the run.
3308
3653
  #
3309
3654
  # @option params [String] :name
3310
3655
  # A name for the run.
3311
3656
  #
3312
- # @option params [String] :output_uri
3313
- # An output URI for the run.
3657
+ # @option params [String] :run_group_id
3658
+ # The run's group ID.
3659
+ #
3660
+ # @option params [Integer] :priority
3661
+ # A priority for the run.
3314
3662
  #
3315
3663
  # @option params [Hash,Array,String,Numeric,Boolean] :parameters
3316
3664
  # Parameters for the run.
@@ -3320,36 +3668,24 @@ module Aws::Omics
3320
3668
  # serialized using the same format as its surroundings and requires no
3321
3669
  # additional encoding or escaping.
3322
3670
  #
3323
- # @option params [Integer] :priority
3324
- # A priority for the run.
3325
- #
3326
- # @option params [required, String] :request_id
3327
- # To ensure that requests don't run multiple times, specify a unique ID
3328
- # for each request.
3329
- #
3330
- # **A suitable default value is auto-generated.** You should normally
3331
- # not need to pass this option.**
3332
- #
3333
- # @option params [required, String] :role_arn
3334
- # A service role for the run.
3335
- #
3336
- # @option params [String] :run_group_id
3337
- # The run's group ID.
3338
- #
3339
- # @option params [String] :run_id
3340
- # The run's ID.
3341
- #
3342
3671
  # @option params [Integer] :storage_capacity
3343
3672
  # A storage capacity for the run in gigabytes.
3344
3673
  #
3674
+ # @option params [String] :output_uri
3675
+ # An output URI for the run.
3676
+ #
3677
+ # @option params [String] :log_level
3678
+ # A log level for the run.
3679
+ #
3345
3680
  # @option params [Hash<String,String>] :tags
3346
3681
  # Tags for the run.
3347
3682
  #
3348
- # @option params [String] :workflow_id
3349
- # The run's workflow ID.
3683
+ # @option params [required, String] :request_id
3684
+ # To ensure that requests don't run multiple times, specify a unique ID
3685
+ # for each request.
3350
3686
  #
3351
- # @option params [String] :workflow_type
3352
- # The run's workflows type.
3687
+ # **A suitable default value is auto-generated.** You should normally
3688
+ # not need to pass this option.**
3353
3689
  #
3354
3690
  # @return [Types::StartRunResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3355
3691
  #
@@ -3361,22 +3697,22 @@ module Aws::Omics
3361
3697
  # @example Request syntax with placeholder values
3362
3698
  #
3363
3699
  # resp = client.start_run({
3364
- # log_level: "OFF", # accepts OFF, FATAL, ERROR, ALL
3700
+ # workflow_id: "WorkflowId",
3701
+ # workflow_type: "PRIVATE", # accepts PRIVATE, READY2RUN
3702
+ # run_id: "RunId",
3703
+ # role_arn: "RunRoleArn", # required
3365
3704
  # name: "RunName",
3366
- # output_uri: "RunOutputUri",
3705
+ # run_group_id: "RunGroupId",
3706
+ # priority: 1,
3367
3707
  # parameters: {
3368
3708
  # },
3369
- # priority: 1,
3370
- # request_id: "RunRequestId", # required
3371
- # role_arn: "RunRoleArn", # required
3372
- # run_group_id: "RunGroupId",
3373
- # run_id: "RunId",
3374
3709
  # storage_capacity: 1,
3710
+ # output_uri: "RunOutputUri",
3711
+ # log_level: "OFF", # accepts OFF, FATAL, ERROR, ALL
3375
3712
  # tags: {
3376
3713
  # "TagKey" => "TagValue",
3377
3714
  # },
3378
- # workflow_id: "WorkflowId",
3379
- # workflow_type: "PRIVATE", # accepts PRIVATE
3715
+ # request_id: "RunRequestId", # required
3380
3716
  # })
3381
3717
  #
3382
3718
  # @example Response structure
@@ -3401,15 +3737,18 @@ module Aws::Omics
3401
3737
  # @option params [required, String] :destination_name
3402
3738
  # The destination variant store for the job.
3403
3739
  #
3404
- # @option params [required, Array<Types::VariantImportItemSource>] :items
3405
- # Items to import.
3406
- #
3407
3740
  # @option params [required, String] :role_arn
3408
3741
  # A service role for the job.
3409
3742
  #
3743
+ # @option params [required, Array<Types::VariantImportItemSource>] :items
3744
+ # Items to import.
3745
+ #
3410
3746
  # @option params [Boolean] :run_left_normalization
3411
3747
  # The job's left normalization setting.
3412
3748
  #
3749
+ # @option params [Hash<String,String>] :annotation_fields
3750
+ # The annotation schema generated by the parsed annotation data.
3751
+ #
3413
3752
  # @return [Types::StartVariantImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3414
3753
  #
3415
3754
  # * {Types::StartVariantImportResponse#job_id #job_id} => String
@@ -3418,13 +3757,16 @@ module Aws::Omics
3418
3757
  #
3419
3758
  # resp = client.start_variant_import_job({
3420
3759
  # destination_name: "StoreName", # required
3760
+ # role_arn: "Arn", # required
3421
3761
  # items: [ # required
3422
3762
  # {
3423
3763
  # source: "S3Uri", # required
3424
3764
  # },
3425
3765
  # ],
3426
- # role_arn: "Arn", # required
3427
3766
  # run_left_normalization: false,
3767
+ # annotation_fields: {
3768
+ # "AnnotationFieldMapKeyString" => "AnnotationFieldMapValueString",
3769
+ # },
3428
3770
  # })
3429
3771
  #
3430
3772
  # @example Response structure
@@ -3496,47 +3838,47 @@ module Aws::Omics
3496
3838
 
3497
3839
  # Updates an annotation store.
3498
3840
  #
3499
- # @option params [String] :description
3500
- # A description for the store.
3501
- #
3502
3841
  # @option params [required, String] :name
3503
3842
  # A name for the store.
3504
3843
  #
3844
+ # @option params [String] :description
3845
+ # A description for the store.
3846
+ #
3505
3847
  # @return [Types::UpdateAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3506
3848
  #
3507
- # * {Types::UpdateAnnotationStoreResponse#creation_time #creation_time} => Time
3508
- # * {Types::UpdateAnnotationStoreResponse#description #description} => String
3509
3849
  # * {Types::UpdateAnnotationStoreResponse#id #id} => String
3510
- # * {Types::UpdateAnnotationStoreResponse#name #name} => String
3511
3850
  # * {Types::UpdateAnnotationStoreResponse#reference #reference} => Types::ReferenceItem
3512
3851
  # * {Types::UpdateAnnotationStoreResponse#status #status} => String
3513
- # * {Types::UpdateAnnotationStoreResponse#store_format #store_format} => String
3514
- # * {Types::UpdateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
3852
+ # * {Types::UpdateAnnotationStoreResponse#name #name} => String
3853
+ # * {Types::UpdateAnnotationStoreResponse#description #description} => String
3854
+ # * {Types::UpdateAnnotationStoreResponse#creation_time #creation_time} => Time
3515
3855
  # * {Types::UpdateAnnotationStoreResponse#update_time #update_time} => Time
3856
+ # * {Types::UpdateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
3857
+ # * {Types::UpdateAnnotationStoreResponse#store_format #store_format} => String
3516
3858
  #
3517
3859
  # @example Request syntax with placeholder values
3518
3860
  #
3519
3861
  # resp = client.update_annotation_store({
3520
- # description: "StoreDescription",
3521
3862
  # name: "String", # required
3863
+ # description: "StoreDescription",
3522
3864
  # })
3523
3865
  #
3524
3866
  # @example Response structure
3525
3867
  #
3526
- # resp.creation_time #=> Time
3527
- # resp.description #=> String
3528
3868
  # resp.id #=> String
3529
- # resp.name #=> String
3530
3869
  # resp.reference.reference_arn #=> String
3531
3870
  # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
3532
- # resp.store_format #=> String, one of "GFF", "TSV", "VCF"
3871
+ # resp.name #=> String
3872
+ # resp.description #=> String
3873
+ # resp.creation_time #=> Time
3874
+ # resp.update_time #=> Time
3533
3875
  # resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
3534
3876
  # resp.store_options.tsv_store_options.format_to_header #=> Hash
3535
3877
  # resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String
3536
3878
  # resp.store_options.tsv_store_options.schema #=> Array
3537
3879
  # resp.store_options.tsv_store_options.schema[0] #=> Hash
3538
3880
  # resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
3539
- # resp.update_time #=> Time
3881
+ # resp.store_format #=> String, one of "GFF", "TSV", "VCF"
3540
3882
  #
3541
3883
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateAnnotationStore AWS API Documentation
3542
3884
  #
@@ -3552,17 +3894,20 @@ module Aws::Omics
3552
3894
  # @option params [required, String] :id
3553
3895
  # The group's ID.
3554
3896
  #
3897
+ # @option params [String] :name
3898
+ # A name for the group.
3899
+ #
3555
3900
  # @option params [Integer] :max_cpus
3556
3901
  # The maximum number of CPUs to use.
3557
3902
  #
3558
- # @option params [Integer] :max_duration
3559
- # A maximum run time for the group in minutes.
3560
- #
3561
3903
  # @option params [Integer] :max_runs
3562
3904
  # The maximum number of concurrent runs for the group.
3563
3905
  #
3564
- # @option params [String] :name
3565
- # A name for the group.
3906
+ # @option params [Integer] :max_duration
3907
+ # A maximum run time for the group in minutes.
3908
+ #
3909
+ # @option params [Integer] :max_gpus
3910
+ # The maximum GPUs that can be used by a run group.
3566
3911
  #
3567
3912
  # @return [Struct] Returns an empty {Seahorse::Client::Response response}.
3568
3913
  #
@@ -3570,10 +3915,11 @@ module Aws::Omics
3570
3915
  #
3571
3916
  # resp = client.update_run_group({
3572
3917
  # id: "RunGroupId", # required
3918
+ # name: "RunGroupName",
3573
3919
  # max_cpus: 1,
3574
- # max_duration: 1,
3575
3920
  # max_runs: 1,
3576
- # name: "RunGroupName",
3921
+ # max_duration: 1,
3922
+ # max_gpus: 1,
3577
3923
  # })
3578
3924
  #
3579
3925
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateRunGroup AWS API Documentation
@@ -3587,37 +3933,37 @@ module Aws::Omics
3587
3933
 
3588
3934
  # Updates a variant store.
3589
3935
  #
3590
- # @option params [String] :description
3591
- # A description for the store.
3592
- #
3593
3936
  # @option params [required, String] :name
3594
3937
  # A name for the store.
3595
3938
  #
3939
+ # @option params [String] :description
3940
+ # A description for the store.
3941
+ #
3596
3942
  # @return [Types::UpdateVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
3597
3943
  #
3598
- # * {Types::UpdateVariantStoreResponse#creation_time #creation_time} => Time
3599
- # * {Types::UpdateVariantStoreResponse#description #description} => String
3600
3944
  # * {Types::UpdateVariantStoreResponse#id #id} => String
3601
- # * {Types::UpdateVariantStoreResponse#name #name} => String
3602
3945
  # * {Types::UpdateVariantStoreResponse#reference #reference} => Types::ReferenceItem
3603
3946
  # * {Types::UpdateVariantStoreResponse#status #status} => String
3947
+ # * {Types::UpdateVariantStoreResponse#name #name} => String
3948
+ # * {Types::UpdateVariantStoreResponse#description #description} => String
3949
+ # * {Types::UpdateVariantStoreResponse#creation_time #creation_time} => Time
3604
3950
  # * {Types::UpdateVariantStoreResponse#update_time #update_time} => Time
3605
3951
  #
3606
3952
  # @example Request syntax with placeholder values
3607
3953
  #
3608
3954
  # resp = client.update_variant_store({
3609
- # description: "StoreDescription",
3610
3955
  # name: "String", # required
3956
+ # description: "StoreDescription",
3611
3957
  # })
3612
3958
  #
3613
3959
  # @example Response structure
3614
3960
  #
3615
- # resp.creation_time #=> Time
3616
- # resp.description #=> String
3617
3961
  # resp.id #=> String
3618
- # resp.name #=> String
3619
3962
  # resp.reference.reference_arn #=> String
3620
3963
  # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
3964
+ # resp.name #=> String
3965
+ # resp.description #=> String
3966
+ # resp.creation_time #=> Time
3621
3967
  # resp.update_time #=> Time
3622
3968
  #
3623
3969
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateVariantStore AWS API Documentation
@@ -3631,23 +3977,23 @@ module Aws::Omics
3631
3977
 
3632
3978
  # Updates a workflow.
3633
3979
  #
3634
- # @option params [String] :description
3635
- # A description for the workflow.
3636
- #
3637
3980
  # @option params [required, String] :id
3638
3981
  # The workflow's ID.
3639
3982
  #
3640
3983
  # @option params [String] :name
3641
3984
  # A name for the workflow.
3642
3985
  #
3986
+ # @option params [String] :description
3987
+ # A description for the workflow.
3988
+ #
3643
3989
  # @return [Struct] Returns an empty {Seahorse::Client::Response response}.
3644
3990
  #
3645
3991
  # @example Request syntax with placeholder values
3646
3992
  #
3647
3993
  # resp = client.update_workflow({
3648
- # description: "WorkflowDescription",
3649
3994
  # id: "WorkflowId", # required
3650
3995
  # name: "WorkflowName",
3996
+ # description: "WorkflowDescription",
3651
3997
  # })
3652
3998
  #
3653
3999
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateWorkflow AWS API Documentation
@@ -3659,6 +4005,52 @@ module Aws::Omics
3659
4005
  req.send_request(options)
3660
4006
  end
3661
4007
 
4008
+ # This operation uploads a specific part of a read set. If you upload a
4009
+ # new part using a previously used part number, the previously uploaded
4010
+ # part will be overwritten.
4011
+ #
4012
+ # @option params [required, String] :sequence_store_id
4013
+ # The Sequence Store ID used for the multipart upload.
4014
+ #
4015
+ # @option params [required, String] :upload_id
4016
+ # The ID for the initiated multipart upload.
4017
+ #
4018
+ # @option params [required, String] :part_source
4019
+ # The source file for an upload part.
4020
+ #
4021
+ # @option params [required, Integer] :part_number
4022
+ # The number of the part being uploaded.
4023
+ #
4024
+ # @option params [required, String, IO] :payload
4025
+ # The read set data to upload for a part.
4026
+ #
4027
+ # @return [Types::UploadReadSetPartResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
4028
+ #
4029
+ # * {Types::UploadReadSetPartResponse#checksum #checksum} => String
4030
+ #
4031
+ # @example Request syntax with placeholder values
4032
+ #
4033
+ # resp = client.upload_read_set_part({
4034
+ # sequence_store_id: "SequenceStoreId", # required
4035
+ # upload_id: "UploadId", # required
4036
+ # part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2
4037
+ # part_number: 1, # required
4038
+ # payload: "data", # required
4039
+ # })
4040
+ #
4041
+ # @example Response structure
4042
+ #
4043
+ # resp.checksum #=> String
4044
+ #
4045
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UploadReadSetPart AWS API Documentation
4046
+ #
4047
+ # @overload upload_read_set_part(params = {})
4048
+ # @param [Hash] params ({})
4049
+ def upload_read_set_part(params = {}, options = {})
4050
+ req = build_request(:upload_read_set_part, params)
4051
+ req.send_request(options)
4052
+ end
4053
+
3662
4054
  # @!endgroup
3663
4055
 
3664
4056
  # @param params ({})
@@ -3672,7 +4064,7 @@ module Aws::Omics
3672
4064
  params: params,
3673
4065
  config: config)
3674
4066
  context[:gem_name] = 'aws-sdk-omics'
3675
- context[:gem_version] = '1.3.0'
4067
+ context[:gem_version] = '1.4.0'
3676
4068
  Seahorse::Client::Request.new(handlers, context)
3677
4069
  end
3678
4070