aws-sdk-omics 1.23.0 → 1.25.0

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data/CHANGELOG.md CHANGED
@@ -1,6 +1,16 @@
1
1
  Unreleased Changes
2
2
  ------------------
3
3
 
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+ 1.25.0 (2024-04-25)
5
+ ------------------
6
+
7
+ * Feature - Code Generated Changes, see `./build_tools` or `aws-sdk-core`'s CHANGELOG.md for details.
8
+
9
+ 1.24.0 (2024-04-11)
10
+ ------------------
11
+
12
+ * Feature - This release adds support for retrieval of S3 direct access metadata on sequence stores and read sets, and adds support for SHA256up and SHA512up HealthOmics ETags.
13
+
4
14
  1.23.0 (2024-01-26)
5
15
  ------------------
6
16
 
data/VERSION CHANGED
@@ -1 +1 @@
1
- 1.23.0
1
+ 1.25.0
@@ -22,6 +22,7 @@ require 'aws-sdk-core/plugins/endpoint_pattern.rb'
22
22
  require 'aws-sdk-core/plugins/response_paging.rb'
23
23
  require 'aws-sdk-core/plugins/stub_responses.rb'
24
24
  require 'aws-sdk-core/plugins/idempotency_token.rb'
25
+ require 'aws-sdk-core/plugins/invocation_id.rb'
25
26
  require 'aws-sdk-core/plugins/jsonvalue_converter.rb'
26
27
  require 'aws-sdk-core/plugins/client_metrics_plugin.rb'
27
28
  require 'aws-sdk-core/plugins/client_metrics_send_plugin.rb'
@@ -72,6 +73,7 @@ module Aws::Omics
72
73
  add_plugin(Aws::Plugins::ResponsePaging)
73
74
  add_plugin(Aws::Plugins::StubResponses)
74
75
  add_plugin(Aws::Plugins::IdempotencyToken)
76
+ add_plugin(Aws::Plugins::InvocationId)
75
77
  add_plugin(Aws::Plugins::JsonvalueConverter)
76
78
  add_plugin(Aws::Plugins::ClientMetricsPlugin)
77
79
  add_plugin(Aws::Plugins::ClientMetricsSendPlugin)
@@ -196,10 +198,17 @@ module Aws::Omics
196
198
  # When set to 'true' the request body will not be compressed
197
199
  # for supported operations.
198
200
  #
199
- # @option options [String] :endpoint
200
- # The client endpoint is normally constructed from the `:region`
201
- # option. You should only configure an `:endpoint` when connecting
202
- # to test or custom endpoints. This should be a valid HTTP(S) URI.
201
+ # @option options [String, URI::HTTPS, URI::HTTP] :endpoint
202
+ # Normally you should not configure the `:endpoint` option
203
+ # directly. This is normally constructed from the `:region`
204
+ # option. Configuring `:endpoint` is normally reserved for
205
+ # connecting to test or custom endpoints. The endpoint should
206
+ # be a URI formatted like:
207
+ #
208
+ # 'http://example.com'
209
+ # 'https://example.com'
210
+ # 'http://example.com:123'
211
+ #
203
212
  #
204
213
  # @option options [Integer] :endpoint_cache_max_entries (1000)
205
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  # Used for the maximum size limit of the LRU cache storing endpoints data
@@ -337,50 +346,65 @@ module Aws::Omics
337
346
  # @option options [Aws::Omics::EndpointProvider] :endpoint_provider
338
347
  # The endpoint provider used to resolve endpoints. Any object that responds to `#resolve_endpoint(parameters)` where `parameters` is a Struct similar to `Aws::Omics::EndpointParameters`
339
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  #
340
- # @option options [URI::HTTP,String] :http_proxy A proxy to send
341
- # requests through. Formatted like 'http://proxy.com:123'.
342
- #
343
- # @option options [Float] :http_open_timeout (15) The number of
344
- # seconds to wait when opening a HTTP session before raising a
345
- # `Timeout::Error`.
346
- #
347
- # @option options [Float] :http_read_timeout (60) The default
348
- # number of seconds to wait for response data. This value can
349
- # safely be set per-request on the session.
350
- #
351
- # @option options [Float] :http_idle_timeout (5) The number of
352
- # seconds a connection is allowed to sit idle before it is
353
- # considered stale. Stale connections are closed and removed
354
- # from the pool before making a request.
355
- #
356
- # @option options [Float] :http_continue_timeout (1) The number of
357
- # seconds to wait for a 100-continue response before sending the
358
- # request body. This option has no effect unless the request has
359
- # "Expect" header set to "100-continue". Defaults to `nil` which
360
- # disables this behaviour. This value can safely be set per
361
- # request on the session.
362
- #
363
- # @option options [Float] :ssl_timeout (nil) Sets the SSL timeout
364
- # in seconds.
365
- #
366
- # @option options [Boolean] :http_wire_trace (false) When `true`,
367
- # HTTP debug output will be sent to the `:logger`.
349
+ # @option options [Float] :http_continue_timeout (1)
350
+ # The number of seconds to wait for a 100-continue response before sending the
351
+ # request body. This option has no effect unless the request has "Expect"
352
+ # header set to "100-continue". Defaults to `nil` which disables this
353
+ # behaviour. This value can safely be set per request on the session.
354
+ #
355
+ # @option options [Float] :http_idle_timeout (5)
356
+ # The number of seconds a connection is allowed to sit idle before it
357
+ # is considered stale. Stale connections are closed and removed from the
358
+ # pool before making a request.
359
+ #
360
+ # @option options [Float] :http_open_timeout (15)
361
+ # The default number of seconds to wait for response data.
362
+ # This value can safely be set per-request on the session.
363
+ #
364
+ # @option options [URI::HTTP,String] :http_proxy
365
+ # A proxy to send requests through. Formatted like 'http://proxy.com:123'.
366
+ #
367
+ # @option options [Float] :http_read_timeout (60)
368
+ # The default number of seconds to wait for response data.
369
+ # This value can safely be set per-request on the session.
370
+ #
371
+ # @option options [Boolean] :http_wire_trace (false)
372
+ # When `true`, HTTP debug output will be sent to the `:logger`.
373
+ #
374
+ # @option options [Proc] :on_chunk_received
375
+ # When a Proc object is provided, it will be used as callback when each chunk
376
+ # of the response body is received. It provides three arguments: the chunk,
377
+ # the number of bytes received, and the total number of
378
+ # bytes in the response (or nil if the server did not send a `content-length`).
379
+ #
380
+ # @option options [Proc] :on_chunk_sent
381
+ # When a Proc object is provided, it will be used as callback when each chunk
382
+ # of the request body is sent. It provides three arguments: the chunk,
383
+ # the number of bytes read from the body, and the total number of
384
+ # bytes in the body.
385
+ #
386
+ # @option options [Boolean] :raise_response_errors (true)
387
+ # When `true`, response errors are raised.
388
+ #
389
+ # @option options [String] :ssl_ca_bundle
390
+ # Full path to the SSL certificate authority bundle file that should be used when
391
+ # verifying peer certificates. If you do not pass `:ssl_ca_bundle` or
392
+ # `:ssl_ca_directory` the the system default will be used if available.
393
+ #
394
+ # @option options [String] :ssl_ca_directory
395
+ # Full path of the directory that contains the unbundled SSL certificate
396
+ # authority files for verifying peer certificates. If you do
397
+ # not pass `:ssl_ca_bundle` or `:ssl_ca_directory` the the system
398
+ # default will be used if available.
368
399
  #
369
- # @option options [Boolean] :ssl_verify_peer (true) When `true`,
370
- # SSL peer certificates are verified when establishing a
371
- # connection.
400
+ # @option options [String] :ssl_ca_store
401
+ # Sets the X509::Store to verify peer certificate.
372
402
  #
373
- # @option options [String] :ssl_ca_bundle Full path to the SSL
374
- # certificate authority bundle file that should be used when
375
- # verifying peer certificates. If you do not pass
376
- # `:ssl_ca_bundle` or `:ssl_ca_directory` the the system default
377
- # will be used if available.
403
+ # @option options [Float] :ssl_timeout
404
+ # Sets the SSL timeout in seconds
378
405
  #
379
- # @option options [String] :ssl_ca_directory Full path of the
380
- # directory that contains the unbundled SSL certificate
381
- # authority files for verifying peer certificates. If you do
382
- # not pass `:ssl_ca_bundle` or `:ssl_ca_directory` the the
383
- # system default will be used if available.
406
+ # @option options [Boolean] :ssl_verify_peer (true)
407
+ # When `true`, SSL peer certificates are verified when establishing a connection.
384
408
  #
385
409
  def initialize(*args)
386
410
  super
@@ -568,7 +592,7 @@ module Aws::Omics
568
592
  # {
569
593
  # part_number: 1, # required
570
594
  # part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2
571
- # checksum: "String", # required
595
+ # checksum: "CompleteReadSetUploadPartListItemChecksumString", # required
572
596
  # },
573
597
  # ],
574
598
  # })
@@ -993,6 +1017,9 @@ module Aws::Omics
993
1017
  # An S3 location that is used to store files that have failed a direct
994
1018
  # upload.
995
1019
  #
1020
+ # @option params [String] :e_tag_algorithm_family
1021
+ # The ETag algorithm family to use for ingested read sets.
1022
+ #
996
1023
  # @return [Types::CreateSequenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
997
1024
  #
998
1025
  # * {Types::CreateSequenceStoreResponse#id #id} => String
@@ -1002,6 +1029,7 @@ module Aws::Omics
1002
1029
  # * {Types::CreateSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig
1003
1030
  # * {Types::CreateSequenceStoreResponse#creation_time #creation_time} => Time
1004
1031
  # * {Types::CreateSequenceStoreResponse#fallback_location #fallback_location} => String
1032
+ # * {Types::CreateSequenceStoreResponse#e_tag_algorithm_family #e_tag_algorithm_family} => String
1005
1033
  #
1006
1034
  # @example Request syntax with placeholder values
1007
1035
  #
@@ -1017,6 +1045,7 @@ module Aws::Omics
1017
1045
  # },
1018
1046
  # client_token: "ClientToken",
1019
1047
  # fallback_location: "S3Destination",
1048
+ # e_tag_algorithm_family: "MD5up", # accepts MD5up, SHA256up, SHA512up
1020
1049
  # })
1021
1050
  #
1022
1051
  # @example Response structure
@@ -1029,6 +1058,7 @@ module Aws::Omics
1029
1058
  # resp.sse_config.key_arn #=> String
1030
1059
  # resp.creation_time #=> Time
1031
1060
  # resp.fallback_location #=> String
1061
+ # resp.e_tag_algorithm_family #=> String, one of "MD5up", "SHA256up", "SHA512up"
1032
1062
  #
1033
1063
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateSequenceStore AWS API Documentation
1034
1064
  #
@@ -1968,15 +1998,18 @@ module Aws::Omics
1968
1998
  # resp.files.source1.total_parts #=> Integer
1969
1999
  # resp.files.source1.part_size #=> Integer
1970
2000
  # resp.files.source1.content_length #=> Integer
2001
+ # resp.files.source1.s3_access.s3_uri #=> String
1971
2002
  # resp.files.source2.total_parts #=> Integer
1972
2003
  # resp.files.source2.part_size #=> Integer
1973
2004
  # resp.files.source2.content_length #=> Integer
2005
+ # resp.files.source2.s3_access.s3_uri #=> String
1974
2006
  # resp.files.index.total_parts #=> Integer
1975
2007
  # resp.files.index.part_size #=> Integer
1976
2008
  # resp.files.index.content_length #=> Integer
2009
+ # resp.files.index.s3_access.s3_uri #=> String
1977
2010
  # resp.status_message #=> String
1978
2011
  # resp.creation_type #=> String, one of "IMPORT", "UPLOAD"
1979
- # resp.etag.algorithm #=> String, one of "FASTQ_MD5up", "BAM_MD5up", "CRAM_MD5up"
2012
+ # resp.etag.algorithm #=> String, one of "FASTQ_MD5up", "BAM_MD5up", "CRAM_MD5up", "FASTQ_SHA256up", "BAM_SHA256up", "CRAM_SHA256up", "FASTQ_SHA512up", "BAM_SHA512up", "CRAM_SHA512up"
1980
2013
  # resp.etag.source1 #=> String
1981
2014
  # resp.etag.source2 #=> String
1982
2015
  #
@@ -2133,9 +2166,11 @@ module Aws::Omics
2133
2166
  # resp.files.source.total_parts #=> Integer
2134
2167
  # resp.files.source.part_size #=> Integer
2135
2168
  # resp.files.source.content_length #=> Integer
2169
+ # resp.files.source.s3_access.s3_uri #=> String
2136
2170
  # resp.files.index.total_parts #=> Integer
2137
2171
  # resp.files.index.part_size #=> Integer
2138
2172
  # resp.files.index.content_length #=> Integer
2173
+ # resp.files.index.s3_access.s3_uri #=> String
2139
2174
  #
2140
2175
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceMetadata AWS API Documentation
2141
2176
  #
@@ -2402,6 +2437,8 @@ module Aws::Omics
2402
2437
  # * {Types::GetSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig
2403
2438
  # * {Types::GetSequenceStoreResponse#creation_time #creation_time} => Time
2404
2439
  # * {Types::GetSequenceStoreResponse#fallback_location #fallback_location} => String
2440
+ # * {Types::GetSequenceStoreResponse#s3_access #s3_access} => Types::SequenceStoreS3Access
2441
+ # * {Types::GetSequenceStoreResponse#e_tag_algorithm_family #e_tag_algorithm_family} => String
2405
2442
  #
2406
2443
  # @example Request syntax with placeholder values
2407
2444
  #
@@ -2419,6 +2456,9 @@ module Aws::Omics
2419
2456
  # resp.sse_config.key_arn #=> String
2420
2457
  # resp.creation_time #=> Time
2421
2458
  # resp.fallback_location #=> String
2459
+ # resp.s3_access.s3_uri #=> String
2460
+ # resp.s3_access.s3_access_point_arn #=> String
2461
+ # resp.e_tag_algorithm_family #=> String, one of "MD5up", "SHA256up", "SHA512up"
2422
2462
  #
2423
2463
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetSequenceStore AWS API Documentation
2424
2464
  #
@@ -2837,7 +2877,7 @@ module Aws::Omics
2837
2877
 
2838
2878
  # Lists multipart read set uploads and for in progress uploads. Once the
2839
2879
  # upload is completed, a read set is created and the upload will no
2840
- # longer be returned in the respone.
2880
+ # longer be returned in the response.
2841
2881
  #
2842
2882
  # @option params [required, String] :sequence_store_id
2843
2883
  # The Sequence Store ID used for the multipart uploads.
@@ -3183,7 +3223,7 @@ module Aws::Omics
3183
3223
  # resp.read_sets[0].creation_time #=> Time
3184
3224
  # resp.read_sets[0].status_message #=> String
3185
3225
  # resp.read_sets[0].creation_type #=> String, one of "IMPORT", "UPLOAD"
3186
- # resp.read_sets[0].etag.algorithm #=> String, one of "FASTQ_MD5up", "BAM_MD5up", "CRAM_MD5up"
3226
+ # resp.read_sets[0].etag.algorithm #=> String, one of "FASTQ_MD5up", "BAM_MD5up", "CRAM_MD5up", "FASTQ_SHA256up", "BAM_SHA256up", "CRAM_SHA256up", "FASTQ_SHA512up", "BAM_SHA512up", "CRAM_SHA512up"
3187
3227
  # resp.read_sets[0].etag.source1 #=> String
3188
3228
  # resp.read_sets[0].etag.source2 #=> String
3189
3229
  #
@@ -3568,6 +3608,7 @@ module Aws::Omics
3568
3608
  # resp.sequence_stores[0].sse_config.key_arn #=> String
3569
3609
  # resp.sequence_stores[0].creation_time #=> Time
3570
3610
  # resp.sequence_stores[0].fallback_location #=> String
3611
+ # resp.sequence_stores[0].e_tag_algorithm_family #=> String, one of "MD5up", "SHA256up", "SHA512up"
3571
3612
  #
3572
3613
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListSequenceStores AWS API Documentation
3573
3614
  #
@@ -4179,7 +4220,7 @@ module Aws::Omics
4179
4220
  # additional encoding or escaping.
4180
4221
  #
4181
4222
  # @option params [Integer] :storage_capacity
4182
- # A storage capacity for the run in gigabytes.
4223
+ # A storage capacity for the run in gibibytes.
4183
4224
  #
4184
4225
  # @option params [String] :output_uri
4185
4226
  # An output URI for the run.
@@ -4632,7 +4673,7 @@ module Aws::Omics
4632
4673
  params: params,
4633
4674
  config: config)
4634
4675
  context[:gem_name] = 'aws-sdk-omics'
4635
- context[:gem_version] = '1.23.0'
4676
+ context[:gem_version] = '1.25.0'
4636
4677
  Seahorse::Client::Request.new(handlers, context)
4637
4678
  end
4638
4679
 
@@ -56,6 +56,7 @@ module Aws::Omics
56
56
  CompleteMultipartReadSetUploadResponse = Shapes::StructureShape.new(name: 'CompleteMultipartReadSetUploadResponse')
57
57
  CompleteReadSetUploadPartList = Shapes::ListShape.new(name: 'CompleteReadSetUploadPartList')
58
58
  CompleteReadSetUploadPartListItem = Shapes::StructureShape.new(name: 'CompleteReadSetUploadPartListItem')
59
+ CompleteReadSetUploadPartListItemChecksumString = Shapes::StringShape.new(name: 'CompleteReadSetUploadPartListItemChecksumString')
59
60
  CompleteReadSetUploadPartListItemPartNumberInteger = Shapes::IntegerShape.new(name: 'CompleteReadSetUploadPartListItemPartNumberInteger')
60
61
  CompletionTime = Shapes::TimestampShape.new(name: 'CompletionTime', timestampFormat: "iso8601")
61
62
  ConflictException = Shapes::StructureShape.new(name: 'ConflictException')
@@ -104,6 +105,7 @@ module Aws::Omics
104
105
  Description = Shapes::StringShape.new(name: 'Description')
105
106
  ETag = Shapes::StructureShape.new(name: 'ETag')
106
107
  ETagAlgorithm = Shapes::StringShape.new(name: 'ETagAlgorithm')
108
+ ETagAlgorithmFamily = Shapes::StringShape.new(name: 'ETagAlgorithmFamily')
107
109
  Encoding = Shapes::StringShape.new(name: 'Encoding')
108
110
  EncryptionType = Shapes::StringShape.new(name: 'EncryptionType')
109
111
  EngineLogStream = Shapes::StringShape.new(name: 'EngineLogStream')
@@ -304,6 +306,7 @@ module Aws::Omics
304
306
  ReadSetName = Shapes::StringShape.new(name: 'ReadSetName')
305
307
  ReadSetPartSource = Shapes::StringShape.new(name: 'ReadSetPartSource')
306
308
  ReadSetPartStreamingBlob = Shapes::BlobShape.new(name: 'ReadSetPartStreamingBlob', requiresLength: true, streaming: true)
309
+ ReadSetS3Access = Shapes::StructureShape.new(name: 'ReadSetS3Access')
307
310
  ReadSetStatus = Shapes::StringShape.new(name: 'ReadSetStatus')
308
311
  ReadSetStatusMessage = Shapes::StringShape.new(name: 'ReadSetStatusMessage')
309
312
  ReadSetStreamingBlob = Shapes::BlobShape.new(name: 'ReadSetStreamingBlob', streaming: true)
@@ -380,6 +383,7 @@ module Aws::Omics
380
383
  RunStatusMessage = Shapes::StringShape.new(name: 'RunStatusMessage')
381
384
  RunTimestamp = Shapes::TimestampShape.new(name: 'RunTimestamp', timestampFormat: "iso8601")
382
385
  RunUuid = Shapes::StringShape.new(name: 'RunUuid')
386
+ S3AccessPointArn = Shapes::StringShape.new(name: 'S3AccessPointArn')
383
387
  S3Destination = Shapes::StringShape.new(name: 'S3Destination')
384
388
  S3Uri = Shapes::StringShape.new(name: 'S3Uri')
385
389
  SampleId = Shapes::StringShape.new(name: 'SampleId')
@@ -395,6 +399,7 @@ module Aws::Omics
395
399
  SequenceStoreFilter = Shapes::StructureShape.new(name: 'SequenceStoreFilter')
396
400
  SequenceStoreId = Shapes::StringShape.new(name: 'SequenceStoreId')
397
401
  SequenceStoreName = Shapes::StringShape.new(name: 'SequenceStoreName')
402
+ SequenceStoreS3Access = Shapes::StructureShape.new(name: 'SequenceStoreS3Access')
398
403
  ServiceQuotaExceededException = Shapes::StructureShape.new(name: 'ServiceQuotaExceededException')
399
404
  ShareDetails = Shapes::StructureShape.new(name: 'ShareDetails')
400
405
  ShareDetailsList = Shapes::ListShape.new(name: 'ShareDetailsList')
@@ -653,7 +658,7 @@ module Aws::Omics
653
658
 
654
659
  CompleteReadSetUploadPartListItem.add_member(:part_number, Shapes::ShapeRef.new(shape: CompleteReadSetUploadPartListItemPartNumberInteger, required: true, location_name: "partNumber"))
655
660
  CompleteReadSetUploadPartListItem.add_member(:part_source, Shapes::ShapeRef.new(shape: ReadSetPartSource, required: true, location_name: "partSource"))
656
- CompleteReadSetUploadPartListItem.add_member(:checksum, Shapes::ShapeRef.new(shape: String, required: true, location_name: "checksum"))
661
+ CompleteReadSetUploadPartListItem.add_member(:checksum, Shapes::ShapeRef.new(shape: CompleteReadSetUploadPartListItemChecksumString, required: true, location_name: "checksum"))
657
662
  CompleteReadSetUploadPartListItem.struct_class = Types::CompleteReadSetUploadPartListItem
658
663
 
659
664
  ConflictException.add_member(:message, Shapes::ShapeRef.new(shape: String, required: true, location_name: "message"))
@@ -755,6 +760,7 @@ module Aws::Omics
755
760
  CreateSequenceStoreRequest.add_member(:tags, Shapes::ShapeRef.new(shape: TagMap, location_name: "tags"))
756
761
  CreateSequenceStoreRequest.add_member(:client_token, Shapes::ShapeRef.new(shape: ClientToken, location_name: "clientToken"))
757
762
  CreateSequenceStoreRequest.add_member(:fallback_location, Shapes::ShapeRef.new(shape: S3Destination, location_name: "fallbackLocation"))
763
+ CreateSequenceStoreRequest.add_member(:e_tag_algorithm_family, Shapes::ShapeRef.new(shape: ETagAlgorithmFamily, location_name: "eTagAlgorithmFamily"))
758
764
  CreateSequenceStoreRequest.struct_class = Types::CreateSequenceStoreRequest
759
765
 
760
766
  CreateSequenceStoreResponse.add_member(:id, Shapes::ShapeRef.new(shape: SequenceStoreId, required: true, location_name: "id"))
@@ -764,6 +770,7 @@ module Aws::Omics
764
770
  CreateSequenceStoreResponse.add_member(:sse_config, Shapes::ShapeRef.new(shape: SseConfig, location_name: "sseConfig"))
765
771
  CreateSequenceStoreResponse.add_member(:creation_time, Shapes::ShapeRef.new(shape: SyntheticTimestamp_date_time, required: true, location_name: "creationTime"))
766
772
  CreateSequenceStoreResponse.add_member(:fallback_location, Shapes::ShapeRef.new(shape: S3Destination, location_name: "fallbackLocation"))
773
+ CreateSequenceStoreResponse.add_member(:e_tag_algorithm_family, Shapes::ShapeRef.new(shape: ETagAlgorithmFamily, location_name: "eTagAlgorithmFamily"))
767
774
  CreateSequenceStoreResponse.struct_class = Types::CreateSequenceStoreResponse
768
775
 
769
776
  CreateShareRequest.add_member(:resource_arn, Shapes::ShapeRef.new(shape: String, required: true, location_name: "resourceArn"))
@@ -895,6 +902,7 @@ module Aws::Omics
895
902
  FileInformation.add_member(:total_parts, Shapes::ShapeRef.new(shape: FileInformationTotalPartsInteger, location_name: "totalParts"))
896
903
  FileInformation.add_member(:part_size, Shapes::ShapeRef.new(shape: FileInformationPartSizeLong, location_name: "partSize"))
897
904
  FileInformation.add_member(:content_length, Shapes::ShapeRef.new(shape: FileInformationContentLengthLong, location_name: "contentLength"))
905
+ FileInformation.add_member(:s3_access, Shapes::ShapeRef.new(shape: ReadSetS3Access, location_name: "s3Access"))
898
906
  FileInformation.struct_class = Types::FileInformation
899
907
 
900
908
  Filter.add_member(:resource_arns, Shapes::ShapeRef.new(shape: ArnList, location_name: "resourceArns"))
@@ -1174,6 +1182,8 @@ module Aws::Omics
1174
1182
  GetSequenceStoreResponse.add_member(:sse_config, Shapes::ShapeRef.new(shape: SseConfig, location_name: "sseConfig"))
1175
1183
  GetSequenceStoreResponse.add_member(:creation_time, Shapes::ShapeRef.new(shape: SyntheticTimestamp_date_time, required: true, location_name: "creationTime"))
1176
1184
  GetSequenceStoreResponse.add_member(:fallback_location, Shapes::ShapeRef.new(shape: S3Destination, location_name: "fallbackLocation"))
1185
+ GetSequenceStoreResponse.add_member(:s3_access, Shapes::ShapeRef.new(shape: SequenceStoreS3Access, location_name: "s3Access"))
1186
+ GetSequenceStoreResponse.add_member(:e_tag_algorithm_family, Shapes::ShapeRef.new(shape: ETagAlgorithmFamily, location_name: "eTagAlgorithmFamily"))
1177
1187
  GetSequenceStoreResponse.struct_class = Types::GetSequenceStoreResponse
1178
1188
 
1179
1189
  GetShareRequest.add_member(:share_id, Shapes::ShapeRef.new(shape: String, required: true, location: "uri", location_name: "shareId"))
@@ -1603,6 +1613,9 @@ module Aws::Omics
1603
1613
  ReadSetListItem.add_member(:etag, Shapes::ShapeRef.new(shape: ETag, location_name: "etag"))
1604
1614
  ReadSetListItem.struct_class = Types::ReadSetListItem
1605
1615
 
1616
+ ReadSetS3Access.add_member(:s3_uri, Shapes::ShapeRef.new(shape: S3Uri, location_name: "s3Uri"))
1617
+ ReadSetS3Access.struct_class = Types::ReadSetS3Access
1618
+
1606
1619
  ReadSetUploadPartList.member = Shapes::ShapeRef.new(shape: ReadSetUploadPartListItem)
1607
1620
 
1608
1621
  ReadSetUploadPartListFilter.add_member(:created_after, Shapes::ShapeRef.new(shape: SyntheticTimestamp_date_time, location_name: "createdAfter"))
@@ -1718,6 +1731,7 @@ module Aws::Omics
1718
1731
  SequenceStoreDetail.add_member(:sse_config, Shapes::ShapeRef.new(shape: SseConfig, location_name: "sseConfig"))
1719
1732
  SequenceStoreDetail.add_member(:creation_time, Shapes::ShapeRef.new(shape: SyntheticTimestamp_date_time, required: true, location_name: "creationTime"))
1720
1733
  SequenceStoreDetail.add_member(:fallback_location, Shapes::ShapeRef.new(shape: S3Destination, location_name: "fallbackLocation"))
1734
+ SequenceStoreDetail.add_member(:e_tag_algorithm_family, Shapes::ShapeRef.new(shape: ETagAlgorithmFamily, location_name: "eTagAlgorithmFamily"))
1721
1735
  SequenceStoreDetail.struct_class = Types::SequenceStoreDetail
1722
1736
 
1723
1737
  SequenceStoreDetailList.member = Shapes::ShapeRef.new(shape: SequenceStoreDetail)
@@ -1727,6 +1741,10 @@ module Aws::Omics
1727
1741
  SequenceStoreFilter.add_member(:created_before, Shapes::ShapeRef.new(shape: SyntheticTimestamp_date_time, location_name: "createdBefore"))
1728
1742
  SequenceStoreFilter.struct_class = Types::SequenceStoreFilter
1729
1743
 
1744
+ SequenceStoreS3Access.add_member(:s3_uri, Shapes::ShapeRef.new(shape: S3Uri, location_name: "s3Uri"))
1745
+ SequenceStoreS3Access.add_member(:s3_access_point_arn, Shapes::ShapeRef.new(shape: S3AccessPointArn, location_name: "s3AccessPointArn"))
1746
+ SequenceStoreS3Access.struct_class = Types::SequenceStoreS3Access
1747
+
1730
1748
  ServiceQuotaExceededException.add_member(:message, Shapes::ShapeRef.new(shape: String, required: true, location_name: "message"))
1731
1749
  ServiceQuotaExceededException.struct_class = Types::ServiceQuotaExceededException
1732
1750
 
@@ -766,7 +766,7 @@ module Aws::Omics
766
766
  # @return [String]
767
767
  #
768
768
  # @!attribute [rw] upload_id
769
- # he ID for the initiated multipart upload.
769
+ # The ID for the initiated multipart upload.
770
770
  # @return [String]
771
771
  #
772
772
  # @!attribute [rw] source_file_type
@@ -987,6 +987,10 @@ module Aws::Omics
987
987
  # upload.
988
988
  # @return [String]
989
989
  #
990
+ # @!attribute [rw] e_tag_algorithm_family
991
+ # The ETag algorithm family to use for ingested read sets.
992
+ # @return [String]
993
+ #
990
994
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateSequenceStoreRequest AWS API Documentation
991
995
  #
992
996
  class CreateSequenceStoreRequest < Struct.new(
@@ -995,7 +999,8 @@ module Aws::Omics
995
999
  :sse_config,
996
1000
  :tags,
997
1001
  :client_token,
998
- :fallback_location)
1002
+ :fallback_location,
1003
+ :e_tag_algorithm_family)
999
1004
  SENSITIVE = []
1000
1005
  include Aws::Structure
1001
1006
  end
@@ -1029,6 +1034,10 @@ module Aws::Omics
1029
1034
  # upload.
1030
1035
  # @return [String]
1031
1036
  #
1037
+ # @!attribute [rw] e_tag_algorithm_family
1038
+ # The algorithm family of the ETag.
1039
+ # @return [String]
1040
+ #
1032
1041
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateSequenceStoreResponse AWS API Documentation
1033
1042
  #
1034
1043
  class CreateSequenceStoreResponse < Struct.new(
@@ -1038,7 +1047,8 @@ module Aws::Omics
1038
1047
  :description,
1039
1048
  :sse_config,
1040
1049
  :creation_time,
1041
- :fallback_location)
1050
+ :fallback_location,
1051
+ :e_tag_algorithm_family)
1042
1052
  SENSITIVE = []
1043
1053
  include Aws::Structure
1044
1054
  end
@@ -1593,12 +1603,17 @@ module Aws::Omics
1593
1603
  # The file's content length.
1594
1604
  # @return [Integer]
1595
1605
  #
1606
+ # @!attribute [rw] s3_access
1607
+ # The S3 URI metadata of a sequence store.
1608
+ # @return [Types::ReadSetS3Access]
1609
+ #
1596
1610
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/FileInformation AWS API Documentation
1597
1611
  #
1598
1612
  class FileInformation < Struct.new(
1599
1613
  :total_parts,
1600
1614
  :part_size,
1601
- :content_length)
1615
+ :content_length,
1616
+ :s3_access)
1602
1617
  SENSITIVE = []
1603
1618
  include Aws::Structure
1604
1619
  end
@@ -2849,6 +2864,15 @@ module Aws::Omics
2849
2864
  # upload.
2850
2865
  # @return [String]
2851
2866
  #
2867
+ # @!attribute [rw] s3_access
2868
+ # The S3 metadata of a sequence store, including the ARN and S3 URI of
2869
+ # the S3 bucket.
2870
+ # @return [Types::SequenceStoreS3Access]
2871
+ #
2872
+ # @!attribute [rw] e_tag_algorithm_family
2873
+ # The algorithm family of the ETag.
2874
+ # @return [String]
2875
+ #
2852
2876
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetSequenceStoreResponse AWS API Documentation
2853
2877
  #
2854
2878
  class GetSequenceStoreResponse < Struct.new(
@@ -2858,7 +2882,9 @@ module Aws::Omics
2858
2882
  :description,
2859
2883
  :sse_config,
2860
2884
  :creation_time,
2861
- :fallback_location)
2885
+ :fallback_location,
2886
+ :s3_access,
2887
+ :e_tag_algorithm_family)
2862
2888
  SENSITIVE = []
2863
2889
  include Aws::Structure
2864
2890
  end
@@ -4744,6 +4770,20 @@ module Aws::Omics
4744
4770
  include Aws::Structure
4745
4771
  end
4746
4772
 
4773
+ # The S3 URI for each read set file.
4774
+ #
4775
+ # @!attribute [rw] s3_uri
4776
+ # The S3 URI for each read set file.
4777
+ # @return [String]
4778
+ #
4779
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ReadSetS3Access AWS API Documentation
4780
+ #
4781
+ class ReadSetS3Access < Struct.new(
4782
+ :s3_uri)
4783
+ SENSITIVE = []
4784
+ include Aws::Structure
4785
+ end
4786
+
4747
4787
  # Filter settings that select for read set upload parts of interest.
4748
4788
  #
4749
4789
  # @!attribute [rw] created_after
@@ -5206,6 +5246,10 @@ module Aws::Omics
5206
5246
  # upload.
5207
5247
  # @return [String]
5208
5248
  #
5249
+ # @!attribute [rw] e_tag_algorithm_family
5250
+ # The algorithm family of the ETag.
5251
+ # @return [String]
5252
+ #
5209
5253
  # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/SequenceStoreDetail AWS API Documentation
5210
5254
  #
5211
5255
  class SequenceStoreDetail < Struct.new(
@@ -5215,7 +5259,8 @@ module Aws::Omics
5215
5259
  :description,
5216
5260
  :sse_config,
5217
5261
  :creation_time,
5218
- :fallback_location)
5262
+ :fallback_location,
5263
+ :e_tag_algorithm_family)
5219
5264
  SENSITIVE = []
5220
5265
  include Aws::Structure
5221
5266
  end
@@ -5244,6 +5289,26 @@ module Aws::Omics
5244
5289
  include Aws::Structure
5245
5290
  end
5246
5291
 
5292
+ # The S3 access metadata of the sequence store.
5293
+ #
5294
+ # @!attribute [rw] s3_uri
5295
+ # The S3 URI of the sequence store.
5296
+ # @return [String]
5297
+ #
5298
+ # @!attribute [rw] s3_access_point_arn
5299
+ # This is ARN of the access point associated with the S3 bucket
5300
+ # storing read sets.
5301
+ # @return [String]
5302
+ #
5303
+ # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/SequenceStoreS3Access AWS API Documentation
5304
+ #
5305
+ class SequenceStoreS3Access < Struct.new(
5306
+ :s3_uri,
5307
+ :s3_access_point_arn)
5308
+ SENSITIVE = []
5309
+ include Aws::Structure
5310
+ end
5311
+
5247
5312
  # The request exceeds a service quota.
5248
5313
  #
5249
5314
  # @!attribute [rw] message
@@ -5771,7 +5836,7 @@ module Aws::Omics
5771
5836
  # @return [Hash,Array,String,Numeric,Boolean]
5772
5837
  #
5773
5838
  # @!attribute [rw] storage_capacity
5774
- # A storage capacity for the run in gigabytes.
5839
+ # A storage capacity for the run in gibibytes.
5775
5840
  # @return [Integer]
5776
5841
  #
5777
5842
  # @!attribute [rw] output_uri
data/lib/aws-sdk-omics.rb CHANGED
@@ -53,6 +53,6 @@ require_relative 'aws-sdk-omics/customizations'
53
53
  # @!group service
54
54
  module Aws::Omics
55
55
 
56
- GEM_VERSION = '1.23.0'
56
+ GEM_VERSION = '1.25.0'
57
57
 
58
58
  end
data/sig/client.rbs CHANGED
@@ -288,6 +288,7 @@ module Aws
288
288
  def sse_config: () -> Types::SseConfig
289
289
  def creation_time: () -> ::Time
290
290
  def fallback_location: () -> ::String
291
+ def e_tag_algorithm_family: () -> ("MD5up" | "SHA256up" | "SHA512up")
291
292
  end
292
293
  # https://docs.aws.amazon.com/sdk-for-ruby/v3/api/Aws/Omics/Client.html#create_sequence_store-instance_method
293
294
  def create_sequence_store: (
@@ -299,7 +300,8 @@ module Aws
299
300
  },
300
301
  ?tags: Hash[::String, ::String],
301
302
  ?client_token: ::String,
302
- ?fallback_location: ::String
303
+ ?fallback_location: ::String,
304
+ ?e_tag_algorithm_family: ("MD5up" | "SHA256up" | "SHA512up")
303
305
  ) -> _CreateSequenceStoreResponseSuccess
304
306
  | (Hash[Symbol, untyped] params, ?Hash[Symbol, untyped] options) -> _CreateSequenceStoreResponseSuccess
305
307
 
@@ -773,6 +775,8 @@ module Aws
773
775
  def sse_config: () -> Types::SseConfig
774
776
  def creation_time: () -> ::Time
775
777
  def fallback_location: () -> ::String
778
+ def s3_access: () -> Types::SequenceStoreS3Access
779
+ def e_tag_algorithm_family: () -> ("MD5up" | "SHA256up" | "SHA512up")
776
780
  end
777
781
  # https://docs.aws.amazon.com/sdk-for-ruby/v3/api/Aws/Omics/Client.html#get_sequence_store-instance_method
778
782
  def get_sequence_store: (
data/sig/types.rbs CHANGED
@@ -284,6 +284,7 @@ module Aws::Omics
284
284
  attr_accessor tags: ::Hash[::String, ::String]
285
285
  attr_accessor client_token: ::String
286
286
  attr_accessor fallback_location: ::String
287
+ attr_accessor e_tag_algorithm_family: ("MD5up" | "SHA256up" | "SHA512up")
287
288
  SENSITIVE: []
288
289
  end
289
290
 
@@ -295,6 +296,7 @@ module Aws::Omics
295
296
  attr_accessor sse_config: Types::SseConfig
296
297
  attr_accessor creation_time: ::Time
297
298
  attr_accessor fallback_location: ::String
299
+ attr_accessor e_tag_algorithm_family: ("MD5up" | "SHA256up" | "SHA512up")
298
300
  SENSITIVE: []
299
301
  end
300
302
 
@@ -438,7 +440,7 @@ module Aws::Omics
438
440
  end
439
441
 
440
442
  class ETag
441
- attr_accessor algorithm: ("FASTQ_MD5up" | "BAM_MD5up" | "CRAM_MD5up")
443
+ attr_accessor algorithm: ("FASTQ_MD5up" | "BAM_MD5up" | "CRAM_MD5up" | "FASTQ_SHA256up" | "BAM_SHA256up" | "CRAM_SHA256up" | "FASTQ_SHA512up" | "BAM_SHA512up" | "CRAM_SHA512up")
442
444
  attr_accessor source1: ::String
443
445
  attr_accessor source2: ::String
444
446
  SENSITIVE: []
@@ -477,6 +479,7 @@ module Aws::Omics
477
479
  attr_accessor total_parts: ::Integer
478
480
  attr_accessor part_size: ::Integer
479
481
  attr_accessor content_length: ::Integer
482
+ attr_accessor s3_access: Types::ReadSetS3Access
480
483
  SENSITIVE: []
481
484
  end
482
485
 
@@ -821,6 +824,8 @@ module Aws::Omics
821
824
  attr_accessor sse_config: Types::SseConfig
822
825
  attr_accessor creation_time: ::Time
823
826
  attr_accessor fallback_location: ::String
827
+ attr_accessor s3_access: Types::SequenceStoreS3Access
828
+ attr_accessor e_tag_algorithm_family: ("MD5up" | "SHA256up" | "SHA512up")
824
829
  SENSITIVE: []
825
830
  end
826
831
 
@@ -1367,6 +1372,11 @@ module Aws::Omics
1367
1372
  SENSITIVE: []
1368
1373
  end
1369
1374
 
1375
+ class ReadSetS3Access
1376
+ attr_accessor s3_uri: ::String
1377
+ SENSITIVE: []
1378
+ end
1379
+
1370
1380
  class ReadSetUploadPartListFilter
1371
1381
  attr_accessor created_after: ::Time
1372
1382
  attr_accessor created_before: ::Time
@@ -1496,6 +1506,7 @@ module Aws::Omics
1496
1506
  attr_accessor sse_config: Types::SseConfig
1497
1507
  attr_accessor creation_time: ::Time
1498
1508
  attr_accessor fallback_location: ::String
1509
+ attr_accessor e_tag_algorithm_family: ("MD5up" | "SHA256up" | "SHA512up")
1499
1510
  SENSITIVE: []
1500
1511
  end
1501
1512
 
@@ -1506,6 +1517,12 @@ module Aws::Omics
1506
1517
  SENSITIVE: []
1507
1518
  end
1508
1519
 
1520
+ class SequenceStoreS3Access
1521
+ attr_accessor s3_uri: ::String
1522
+ attr_accessor s3_access_point_arn: ::String
1523
+ SENSITIVE: []
1524
+ end
1525
+
1509
1526
  class ServiceQuotaExceededException
1510
1527
  attr_accessor message: ::String
1511
1528
  SENSITIVE: []
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: aws-sdk-omics
3
3
  version: !ruby/object:Gem::Version
4
- version: 1.23.0
4
+ version: 1.25.0
5
5
  platform: ruby
6
6
  authors:
7
7
  - Amazon Web Services
8
8
  autorequire:
9
9
  bindir: bin
10
10
  cert_chain: []
11
- date: 2024-01-26 00:00:00.000000000 Z
11
+ date: 2024-04-25 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: aws-sdk-core
@@ -19,7 +19,7 @@ dependencies:
19
19
  version: '3'
20
20
  - - ">="
21
21
  - !ruby/object:Gem::Version
22
- version: 3.191.0
22
+ version: 3.193.0
23
23
  type: :runtime
24
24
  prerelease: false
25
25
  version_requirements: !ruby/object:Gem::Requirement
@@ -29,7 +29,7 @@ dependencies:
29
29
  version: '3'
30
30
  - - ">="
31
31
  - !ruby/object:Gem::Version
32
- version: 3.191.0
32
+ version: 3.193.0
33
33
  - !ruby/object:Gem::Dependency
34
34
  name: aws-sigv4
35
35
  requirement: !ruby/object:Gem::Requirement