aws-sdk-omics 1.22.0 → 1.24.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/CHANGELOG.md +10 -0
- data/VERSION +1 -1
- data/lib/aws-sdk-omics/client.rb +23 -6
- data/lib/aws-sdk-omics/client_api.rb +19 -1
- data/lib/aws-sdk-omics/plugins/endpoints.rb +1 -0
- data/lib/aws-sdk-omics/types.rb +72 -7
- data/lib/aws-sdk-omics.rb +1 -1
- data/sig/client.rbs +1586 -0
- data/sig/errors.rbs +46 -0
- data/sig/resource.rbs +79 -0
- data/sig/types.rbs +1946 -0
- data/sig/waiters.rbs +195 -0
- metadata +13 -8
data/sig/types.rbs
ADDED
@@ -0,0 +1,1946 @@
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# WARNING ABOUT GENERATED CODE
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#
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# This file is generated. See the contributing guide for more information:
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# https://github.com/aws/aws-sdk-ruby/blob/version-3/CONTRIBUTING.md
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#
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# WARNING ABOUT GENERATED CODE
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module Aws::Omics
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module Types
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class AbortMultipartReadSetUploadRequest
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attr_accessor sequence_store_id: ::String
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attr_accessor upload_id: ::String
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SENSITIVE: []
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end
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class AbortMultipartReadSetUploadResponse < Aws::EmptyStructure
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end
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class AcceptShareRequest
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attr_accessor share_id: ::String
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SENSITIVE: []
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end
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class AcceptShareResponse
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attr_accessor status: ("PENDING" | "ACTIVATING" | "ACTIVE" | "DELETING" | "DELETED" | "FAILED")
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SENSITIVE: []
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end
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class AccessDeniedException
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attr_accessor message: ::String
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SENSITIVE: []
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end
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class ActivateReadSetFilter
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attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
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attr_accessor created_after: ::Time
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attr_accessor created_before: ::Time
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SENSITIVE: []
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end
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class ActivateReadSetJobItem
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attr_accessor id: ::String
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attr_accessor sequence_store_id: ::String
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attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
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attr_accessor creation_time: ::Time
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attr_accessor completion_time: ::Time
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SENSITIVE: []
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end
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class ActivateReadSetSourceItem
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attr_accessor read_set_id: ::String
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attr_accessor status: ("NOT_STARTED" | "IN_PROGRESS" | "FINISHED" | "FAILED")
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attr_accessor status_message: ::String
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SENSITIVE: []
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end
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class AnnotationImportItemDetail
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attr_accessor source: ::String
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attr_accessor job_status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLED" | "COMPLETED" | "FAILED" | "COMPLETED_WITH_FAILURES")
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SENSITIVE: []
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end
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class AnnotationImportItemSource
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attr_accessor source: ::String
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SENSITIVE: []
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end
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class AnnotationImportJobItem
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attr_accessor id: ::String
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attr_accessor destination_name: ::String
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attr_accessor version_name: ::String
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attr_accessor role_arn: ::String
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attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLED" | "COMPLETED" | "FAILED" | "COMPLETED_WITH_FAILURES")
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attr_accessor creation_time: ::Time
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attr_accessor update_time: ::Time
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attr_accessor completion_time: ::Time
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attr_accessor run_left_normalization: bool
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attr_accessor annotation_fields: ::Hash[::String, ::String]
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SENSITIVE: []
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end
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class AnnotationStoreItem
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attr_accessor id: ::String
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attr_accessor reference: Types::ReferenceItem
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attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
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attr_accessor store_arn: ::String
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attr_accessor name: ::String
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attr_accessor store_format: ("GFF" | "TSV" | "VCF")
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attr_accessor description: ::String
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attr_accessor sse_config: Types::SseConfig
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attr_accessor creation_time: ::Time
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attr_accessor update_time: ::Time
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attr_accessor status_message: ::String
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attr_accessor store_size_bytes: ::Integer
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SENSITIVE: []
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end
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class AnnotationStoreVersionItem
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attr_accessor store_id: ::String
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attr_accessor id: ::String
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attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
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attr_accessor version_arn: ::String
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attr_accessor name: ::String
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attr_accessor version_name: ::String
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attr_accessor description: ::String
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attr_accessor creation_time: ::Time
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attr_accessor update_time: ::Time
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attr_accessor status_message: ::String
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attr_accessor version_size_bytes: ::Integer
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SENSITIVE: []
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end
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class BatchDeleteReadSetRequest
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attr_accessor ids: ::Array[::String]
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attr_accessor sequence_store_id: ::String
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SENSITIVE: []
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end
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class BatchDeleteReadSetResponse
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attr_accessor errors: ::Array[Types::ReadSetBatchError]
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SENSITIVE: []
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end
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class CancelAnnotationImportRequest
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attr_accessor job_id: ::String
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SENSITIVE: []
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end
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class CancelAnnotationImportResponse < Aws::EmptyStructure
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end
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class CancelRunRequest
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attr_accessor id: ::String
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SENSITIVE: []
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end
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class CancelVariantImportRequest
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attr_accessor job_id: ::String
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SENSITIVE: []
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end
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class CancelVariantImportResponse < Aws::EmptyStructure
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end
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class CompleteMultipartReadSetUploadRequest
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attr_accessor sequence_store_id: ::String
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attr_accessor upload_id: ::String
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attr_accessor parts: ::Array[Types::CompleteReadSetUploadPartListItem]
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SENSITIVE: []
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end
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class CompleteMultipartReadSetUploadResponse
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attr_accessor read_set_id: ::String
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SENSITIVE: []
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end
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class CompleteReadSetUploadPartListItem
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attr_accessor part_number: ::Integer
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attr_accessor part_source: ("SOURCE1" | "SOURCE2")
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attr_accessor checksum: ::String
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SENSITIVE: []
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end
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class ConflictException
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attr_accessor message: ::String
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SENSITIVE: []
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end
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class CreateAnnotationStoreRequest
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attr_accessor reference: Types::ReferenceItem
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attr_accessor name: ::String
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attr_accessor description: ::String
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attr_accessor tags: ::Hash[::String, ::String]
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attr_accessor version_name: ::String
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attr_accessor sse_config: Types::SseConfig
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attr_accessor store_format: ("GFF" | "TSV" | "VCF")
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attr_accessor store_options: Types::StoreOptions
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SENSITIVE: []
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end
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class CreateAnnotationStoreResponse
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attr_accessor id: ::String
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attr_accessor reference: Types::ReferenceItem
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attr_accessor store_format: ("GFF" | "TSV" | "VCF")
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attr_accessor store_options: Types::StoreOptions
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attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
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attr_accessor name: ::String
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attr_accessor version_name: ::String
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attr_accessor creation_time: ::Time
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SENSITIVE: []
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end
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class CreateAnnotationStoreVersionRequest
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attr_accessor name: ::String
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attr_accessor version_name: ::String
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attr_accessor description: ::String
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attr_accessor version_options: Types::VersionOptions
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attr_accessor tags: ::Hash[::String, ::String]
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SENSITIVE: []
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end
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class CreateAnnotationStoreVersionResponse
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attr_accessor id: ::String
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attr_accessor version_name: ::String
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attr_accessor store_id: ::String
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attr_accessor version_options: Types::VersionOptions
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attr_accessor name: ::String
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attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
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attr_accessor creation_time: ::Time
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SENSITIVE: []
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end
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class CreateMultipartReadSetUploadRequest
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attr_accessor sequence_store_id: ::String
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attr_accessor client_token: ::String
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attr_accessor source_file_type: ("FASTQ" | "BAM" | "CRAM" | "UBAM")
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attr_accessor subject_id: ::String
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attr_accessor sample_id: ::String
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attr_accessor generated_from: ::String
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attr_accessor reference_arn: ::String
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attr_accessor name: ::String
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attr_accessor description: ::String
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attr_accessor tags: ::Hash[::String, ::String]
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SENSITIVE: []
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end
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class CreateMultipartReadSetUploadResponse
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attr_accessor sequence_store_id: ::String
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attr_accessor upload_id: ::String
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attr_accessor source_file_type: ("FASTQ" | "BAM" | "CRAM" | "UBAM")
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attr_accessor subject_id: ::String
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attr_accessor sample_id: ::String
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attr_accessor generated_from: ::String
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attr_accessor reference_arn: ::String
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attr_accessor name: ::String
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attr_accessor description: ::String
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attr_accessor tags: ::Hash[::String, ::String]
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attr_accessor creation_time: ::Time
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SENSITIVE: []
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end
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class CreateReferenceStoreRequest
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attr_accessor name: ::String
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attr_accessor description: ::String
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attr_accessor sse_config: Types::SseConfig
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attr_accessor tags: ::Hash[::String, ::String]
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attr_accessor client_token: ::String
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SENSITIVE: []
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end
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class CreateReferenceStoreResponse
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attr_accessor id: ::String
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attr_accessor arn: ::String
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attr_accessor name: ::String
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attr_accessor description: ::String
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attr_accessor sse_config: Types::SseConfig
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attr_accessor creation_time: ::Time
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SENSITIVE: []
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end
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class CreateRunGroupRequest
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attr_accessor name: ::String
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attr_accessor max_cpus: ::Integer
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attr_accessor max_runs: ::Integer
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attr_accessor max_duration: ::Integer
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attr_accessor tags: ::Hash[::String, ::String]
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attr_accessor request_id: ::String
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attr_accessor max_gpus: ::Integer
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SENSITIVE: []
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end
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class CreateRunGroupResponse
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attr_accessor arn: ::String
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attr_accessor id: ::String
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attr_accessor tags: ::Hash[::String, ::String]
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SENSITIVE: []
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end
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class CreateSequenceStoreRequest
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attr_accessor name: ::String
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attr_accessor description: ::String
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attr_accessor sse_config: Types::SseConfig
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attr_accessor tags: ::Hash[::String, ::String]
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attr_accessor client_token: ::String
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attr_accessor fallback_location: ::String
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attr_accessor e_tag_algorithm_family: ("MD5up" | "SHA256up" | "SHA512up")
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SENSITIVE: []
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end
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class CreateSequenceStoreResponse
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attr_accessor id: ::String
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attr_accessor arn: ::String
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attr_accessor name: ::String
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attr_accessor description: ::String
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attr_accessor sse_config: Types::SseConfig
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attr_accessor creation_time: ::Time
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attr_accessor fallback_location: ::String
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attr_accessor e_tag_algorithm_family: ("MD5up" | "SHA256up" | "SHA512up")
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SENSITIVE: []
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end
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class CreateShareRequest
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attr_accessor resource_arn: ::String
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attr_accessor principal_subscriber: ::String
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attr_accessor share_name: ::String
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SENSITIVE: []
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end
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class CreateShareResponse
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attr_accessor share_id: ::String
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attr_accessor status: ("PENDING" | "ACTIVATING" | "ACTIVE" | "DELETING" | "DELETED" | "FAILED")
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attr_accessor share_name: ::String
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SENSITIVE: []
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end
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class CreateVariantStoreRequest
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attr_accessor reference: Types::ReferenceItem
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attr_accessor name: ::String
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attr_accessor description: ::String
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attr_accessor tags: ::Hash[::String, ::String]
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attr_accessor sse_config: Types::SseConfig
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SENSITIVE: []
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end
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class CreateVariantStoreResponse
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attr_accessor id: ::String
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attr_accessor reference: Types::ReferenceItem
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attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
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attr_accessor name: ::String
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attr_accessor creation_time: ::Time
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SENSITIVE: []
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end
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class CreateWorkflowRequest
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attr_accessor name: ::String
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attr_accessor description: ::String
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attr_accessor engine: ("WDL" | "NEXTFLOW" | "CWL")
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attr_accessor definition_zip: ::String
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attr_accessor definition_uri: ::String
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attr_accessor main: ::String
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attr_accessor parameter_template: ::Hash[::String, Types::WorkflowParameter]
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attr_accessor storage_capacity: ::Integer
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attr_accessor tags: ::Hash[::String, ::String]
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attr_accessor request_id: ::String
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attr_accessor accelerators: ("GPU")
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SENSITIVE: []
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end
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class CreateWorkflowResponse
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attr_accessor arn: ::String
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attr_accessor id: ::String
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attr_accessor status: ("CREATING" | "ACTIVE" | "UPDATING" | "DELETED" | "FAILED" | "INACTIVE")
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attr_accessor tags: ::Hash[::String, ::String]
|
355
|
+
SENSITIVE: []
|
356
|
+
end
|
357
|
+
|
358
|
+
class DeleteAnnotationStoreRequest
|
359
|
+
attr_accessor name: ::String
|
360
|
+
attr_accessor force: bool
|
361
|
+
SENSITIVE: []
|
362
|
+
end
|
363
|
+
|
364
|
+
class DeleteAnnotationStoreResponse
|
365
|
+
attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
|
366
|
+
SENSITIVE: []
|
367
|
+
end
|
368
|
+
|
369
|
+
class DeleteAnnotationStoreVersionsRequest
|
370
|
+
attr_accessor name: ::String
|
371
|
+
attr_accessor versions: ::Array[::String]
|
372
|
+
attr_accessor force: bool
|
373
|
+
SENSITIVE: []
|
374
|
+
end
|
375
|
+
|
376
|
+
class DeleteAnnotationStoreVersionsResponse
|
377
|
+
attr_accessor errors: ::Array[Types::VersionDeleteError]
|
378
|
+
SENSITIVE: []
|
379
|
+
end
|
380
|
+
|
381
|
+
class DeleteReferenceRequest
|
382
|
+
attr_accessor id: ::String
|
383
|
+
attr_accessor reference_store_id: ::String
|
384
|
+
SENSITIVE: []
|
385
|
+
end
|
386
|
+
|
387
|
+
class DeleteReferenceResponse < Aws::EmptyStructure
|
388
|
+
end
|
389
|
+
|
390
|
+
class DeleteReferenceStoreRequest
|
391
|
+
attr_accessor id: ::String
|
392
|
+
SENSITIVE: []
|
393
|
+
end
|
394
|
+
|
395
|
+
class DeleteReferenceStoreResponse < Aws::EmptyStructure
|
396
|
+
end
|
397
|
+
|
398
|
+
class DeleteRunGroupRequest
|
399
|
+
attr_accessor id: ::String
|
400
|
+
SENSITIVE: []
|
401
|
+
end
|
402
|
+
|
403
|
+
class DeleteRunRequest
|
404
|
+
attr_accessor id: ::String
|
405
|
+
SENSITIVE: []
|
406
|
+
end
|
407
|
+
|
408
|
+
class DeleteSequenceStoreRequest
|
409
|
+
attr_accessor id: ::String
|
410
|
+
SENSITIVE: []
|
411
|
+
end
|
412
|
+
|
413
|
+
class DeleteSequenceStoreResponse < Aws::EmptyStructure
|
414
|
+
end
|
415
|
+
|
416
|
+
class DeleteShareRequest
|
417
|
+
attr_accessor share_id: ::String
|
418
|
+
SENSITIVE: []
|
419
|
+
end
|
420
|
+
|
421
|
+
class DeleteShareResponse
|
422
|
+
attr_accessor status: ("PENDING" | "ACTIVATING" | "ACTIVE" | "DELETING" | "DELETED" | "FAILED")
|
423
|
+
SENSITIVE: []
|
424
|
+
end
|
425
|
+
|
426
|
+
class DeleteVariantStoreRequest
|
427
|
+
attr_accessor name: ::String
|
428
|
+
attr_accessor force: bool
|
429
|
+
SENSITIVE: []
|
430
|
+
end
|
431
|
+
|
432
|
+
class DeleteVariantStoreResponse
|
433
|
+
attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
|
434
|
+
SENSITIVE: []
|
435
|
+
end
|
436
|
+
|
437
|
+
class DeleteWorkflowRequest
|
438
|
+
attr_accessor id: ::String
|
439
|
+
SENSITIVE: []
|
440
|
+
end
|
441
|
+
|
442
|
+
class ETag
|
443
|
+
attr_accessor algorithm: ("FASTQ_MD5up" | "BAM_MD5up" | "CRAM_MD5up" | "FASTQ_SHA256up" | "BAM_SHA256up" | "CRAM_SHA256up" | "FASTQ_SHA512up" | "BAM_SHA512up" | "CRAM_SHA512up")
|
444
|
+
attr_accessor source1: ::String
|
445
|
+
attr_accessor source2: ::String
|
446
|
+
SENSITIVE: []
|
447
|
+
end
|
448
|
+
|
449
|
+
class ExportReadSet
|
450
|
+
attr_accessor read_set_id: ::String
|
451
|
+
SENSITIVE: []
|
452
|
+
end
|
453
|
+
|
454
|
+
class ExportReadSetDetail
|
455
|
+
attr_accessor id: ::String
|
456
|
+
attr_accessor status: ("NOT_STARTED" | "IN_PROGRESS" | "FINISHED" | "FAILED")
|
457
|
+
attr_accessor status_message: ::String
|
458
|
+
SENSITIVE: []
|
459
|
+
end
|
460
|
+
|
461
|
+
class ExportReadSetFilter
|
462
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
463
|
+
attr_accessor created_after: ::Time
|
464
|
+
attr_accessor created_before: ::Time
|
465
|
+
SENSITIVE: []
|
466
|
+
end
|
467
|
+
|
468
|
+
class ExportReadSetJobDetail
|
469
|
+
attr_accessor id: ::String
|
470
|
+
attr_accessor sequence_store_id: ::String
|
471
|
+
attr_accessor destination: ::String
|
472
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
473
|
+
attr_accessor creation_time: ::Time
|
474
|
+
attr_accessor completion_time: ::Time
|
475
|
+
SENSITIVE: []
|
476
|
+
end
|
477
|
+
|
478
|
+
class FileInformation
|
479
|
+
attr_accessor total_parts: ::Integer
|
480
|
+
attr_accessor part_size: ::Integer
|
481
|
+
attr_accessor content_length: ::Integer
|
482
|
+
attr_accessor s3_access: Types::ReadSetS3Access
|
483
|
+
SENSITIVE: []
|
484
|
+
end
|
485
|
+
|
486
|
+
class Filter
|
487
|
+
attr_accessor resource_arns: ::Array[::String]
|
488
|
+
attr_accessor status: ::Array[("PENDING" | "ACTIVATING" | "ACTIVE" | "DELETING" | "DELETED" | "FAILED")]
|
489
|
+
SENSITIVE: []
|
490
|
+
end
|
491
|
+
|
492
|
+
class FormatOptions
|
493
|
+
attr_accessor tsv_options: Types::TsvOptions
|
494
|
+
attr_accessor vcf_options: Types::VcfOptions
|
495
|
+
attr_accessor unknown: untyped
|
496
|
+
SENSITIVE: []
|
497
|
+
|
498
|
+
class TsvOptions < FormatOptions
|
499
|
+
end
|
500
|
+
class VcfOptions < FormatOptions
|
501
|
+
end
|
502
|
+
class Unknown < FormatOptions
|
503
|
+
end
|
504
|
+
end
|
505
|
+
|
506
|
+
class GetAnnotationImportRequest
|
507
|
+
attr_accessor job_id: ::String
|
508
|
+
SENSITIVE: []
|
509
|
+
end
|
510
|
+
|
511
|
+
class GetAnnotationImportResponse
|
512
|
+
attr_accessor id: ::String
|
513
|
+
attr_accessor destination_name: ::String
|
514
|
+
attr_accessor version_name: ::String
|
515
|
+
attr_accessor role_arn: ::String
|
516
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLED" | "COMPLETED" | "FAILED" | "COMPLETED_WITH_FAILURES")
|
517
|
+
attr_accessor status_message: ::String
|
518
|
+
attr_accessor creation_time: ::Time
|
519
|
+
attr_accessor update_time: ::Time
|
520
|
+
attr_accessor completion_time: ::Time
|
521
|
+
attr_accessor items: ::Array[Types::AnnotationImportItemDetail]
|
522
|
+
attr_accessor run_left_normalization: bool
|
523
|
+
attr_accessor format_options: Types::FormatOptions
|
524
|
+
attr_accessor annotation_fields: ::Hash[::String, ::String]
|
525
|
+
SENSITIVE: []
|
526
|
+
end
|
527
|
+
|
528
|
+
class GetAnnotationStoreRequest
|
529
|
+
attr_accessor name: ::String
|
530
|
+
SENSITIVE: []
|
531
|
+
end
|
532
|
+
|
533
|
+
class GetAnnotationStoreResponse
|
534
|
+
attr_accessor id: ::String
|
535
|
+
attr_accessor reference: Types::ReferenceItem
|
536
|
+
attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
|
537
|
+
attr_accessor store_arn: ::String
|
538
|
+
attr_accessor name: ::String
|
539
|
+
attr_accessor description: ::String
|
540
|
+
attr_accessor sse_config: Types::SseConfig
|
541
|
+
attr_accessor creation_time: ::Time
|
542
|
+
attr_accessor update_time: ::Time
|
543
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
544
|
+
attr_accessor store_options: Types::StoreOptions
|
545
|
+
attr_accessor store_format: ("GFF" | "TSV" | "VCF")
|
546
|
+
attr_accessor status_message: ::String
|
547
|
+
attr_accessor store_size_bytes: ::Integer
|
548
|
+
attr_accessor num_versions: ::Integer
|
549
|
+
SENSITIVE: []
|
550
|
+
end
|
551
|
+
|
552
|
+
class GetAnnotationStoreVersionRequest
|
553
|
+
attr_accessor name: ::String
|
554
|
+
attr_accessor version_name: ::String
|
555
|
+
SENSITIVE: []
|
556
|
+
end
|
557
|
+
|
558
|
+
class GetAnnotationStoreVersionResponse
|
559
|
+
attr_accessor store_id: ::String
|
560
|
+
attr_accessor id: ::String
|
561
|
+
attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
|
562
|
+
attr_accessor version_arn: ::String
|
563
|
+
attr_accessor name: ::String
|
564
|
+
attr_accessor version_name: ::String
|
565
|
+
attr_accessor description: ::String
|
566
|
+
attr_accessor creation_time: ::Time
|
567
|
+
attr_accessor update_time: ::Time
|
568
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
569
|
+
attr_accessor version_options: Types::VersionOptions
|
570
|
+
attr_accessor status_message: ::String
|
571
|
+
attr_accessor version_size_bytes: ::Integer
|
572
|
+
SENSITIVE: []
|
573
|
+
end
|
574
|
+
|
575
|
+
class GetReadSetActivationJobRequest
|
576
|
+
attr_accessor id: ::String
|
577
|
+
attr_accessor sequence_store_id: ::String
|
578
|
+
SENSITIVE: []
|
579
|
+
end
|
580
|
+
|
581
|
+
class GetReadSetActivationJobResponse
|
582
|
+
attr_accessor id: ::String
|
583
|
+
attr_accessor sequence_store_id: ::String
|
584
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
585
|
+
attr_accessor status_message: ::String
|
586
|
+
attr_accessor creation_time: ::Time
|
587
|
+
attr_accessor completion_time: ::Time
|
588
|
+
attr_accessor sources: ::Array[Types::ActivateReadSetSourceItem]
|
589
|
+
SENSITIVE: []
|
590
|
+
end
|
591
|
+
|
592
|
+
class GetReadSetExportJobRequest
|
593
|
+
attr_accessor sequence_store_id: ::String
|
594
|
+
attr_accessor id: ::String
|
595
|
+
SENSITIVE: []
|
596
|
+
end
|
597
|
+
|
598
|
+
class GetReadSetExportJobResponse
|
599
|
+
attr_accessor id: ::String
|
600
|
+
attr_accessor sequence_store_id: ::String
|
601
|
+
attr_accessor destination: ::String
|
602
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
603
|
+
attr_accessor status_message: ::String
|
604
|
+
attr_accessor creation_time: ::Time
|
605
|
+
attr_accessor completion_time: ::Time
|
606
|
+
attr_accessor read_sets: ::Array[Types::ExportReadSetDetail]
|
607
|
+
SENSITIVE: []
|
608
|
+
end
|
609
|
+
|
610
|
+
class GetReadSetImportJobRequest
|
611
|
+
attr_accessor id: ::String
|
612
|
+
attr_accessor sequence_store_id: ::String
|
613
|
+
SENSITIVE: []
|
614
|
+
end
|
615
|
+
|
616
|
+
class GetReadSetImportJobResponse
|
617
|
+
attr_accessor id: ::String
|
618
|
+
attr_accessor sequence_store_id: ::String
|
619
|
+
attr_accessor role_arn: ::String
|
620
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
621
|
+
attr_accessor status_message: ::String
|
622
|
+
attr_accessor creation_time: ::Time
|
623
|
+
attr_accessor completion_time: ::Time
|
624
|
+
attr_accessor sources: ::Array[Types::ImportReadSetSourceItem]
|
625
|
+
SENSITIVE: []
|
626
|
+
end
|
627
|
+
|
628
|
+
class GetReadSetMetadataRequest
|
629
|
+
attr_accessor id: ::String
|
630
|
+
attr_accessor sequence_store_id: ::String
|
631
|
+
SENSITIVE: []
|
632
|
+
end
|
633
|
+
|
634
|
+
class GetReadSetMetadataResponse
|
635
|
+
attr_accessor id: ::String
|
636
|
+
attr_accessor arn: ::String
|
637
|
+
attr_accessor sequence_store_id: ::String
|
638
|
+
attr_accessor subject_id: ::String
|
639
|
+
attr_accessor sample_id: ::String
|
640
|
+
attr_accessor status: ("ARCHIVED" | "ACTIVATING" | "ACTIVE" | "DELETING" | "DELETED" | "PROCESSING_UPLOAD" | "UPLOAD_FAILED")
|
641
|
+
attr_accessor name: ::String
|
642
|
+
attr_accessor description: ::String
|
643
|
+
attr_accessor file_type: ("FASTQ" | "BAM" | "CRAM" | "UBAM")
|
644
|
+
attr_accessor creation_time: ::Time
|
645
|
+
attr_accessor sequence_information: Types::SequenceInformation
|
646
|
+
attr_accessor reference_arn: ::String
|
647
|
+
attr_accessor files: Types::ReadSetFiles
|
648
|
+
attr_accessor status_message: ::String
|
649
|
+
attr_accessor creation_type: ("IMPORT" | "UPLOAD")
|
650
|
+
attr_accessor etag: Types::ETag
|
651
|
+
SENSITIVE: []
|
652
|
+
end
|
653
|
+
|
654
|
+
class GetReadSetRequest
|
655
|
+
attr_accessor id: ::String
|
656
|
+
attr_accessor sequence_store_id: ::String
|
657
|
+
attr_accessor file: ("SOURCE1" | "SOURCE2" | "INDEX")
|
658
|
+
attr_accessor part_number: ::Integer
|
659
|
+
SENSITIVE: []
|
660
|
+
end
|
661
|
+
|
662
|
+
class GetReadSetResponse
|
663
|
+
attr_accessor payload: ::IO
|
664
|
+
SENSITIVE: []
|
665
|
+
end
|
666
|
+
|
667
|
+
class GetReferenceImportJobRequest
|
668
|
+
attr_accessor id: ::String
|
669
|
+
attr_accessor reference_store_id: ::String
|
670
|
+
SENSITIVE: []
|
671
|
+
end
|
672
|
+
|
673
|
+
class GetReferenceImportJobResponse
|
674
|
+
attr_accessor id: ::String
|
675
|
+
attr_accessor reference_store_id: ::String
|
676
|
+
attr_accessor role_arn: ::String
|
677
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
678
|
+
attr_accessor status_message: ::String
|
679
|
+
attr_accessor creation_time: ::Time
|
680
|
+
attr_accessor completion_time: ::Time
|
681
|
+
attr_accessor sources: ::Array[Types::ImportReferenceSourceItem]
|
682
|
+
SENSITIVE: []
|
683
|
+
end
|
684
|
+
|
685
|
+
class GetReferenceMetadataRequest
|
686
|
+
attr_accessor id: ::String
|
687
|
+
attr_accessor reference_store_id: ::String
|
688
|
+
SENSITIVE: []
|
689
|
+
end
|
690
|
+
|
691
|
+
class GetReferenceMetadataResponse
|
692
|
+
attr_accessor id: ::String
|
693
|
+
attr_accessor arn: ::String
|
694
|
+
attr_accessor reference_store_id: ::String
|
695
|
+
attr_accessor md5: ::String
|
696
|
+
attr_accessor status: ("ACTIVE" | "DELETING" | "DELETED")
|
697
|
+
attr_accessor name: ::String
|
698
|
+
attr_accessor description: ::String
|
699
|
+
attr_accessor creation_time: ::Time
|
700
|
+
attr_accessor update_time: ::Time
|
701
|
+
attr_accessor files: Types::ReferenceFiles
|
702
|
+
SENSITIVE: []
|
703
|
+
end
|
704
|
+
|
705
|
+
class GetReferenceRequest
|
706
|
+
attr_accessor id: ::String
|
707
|
+
attr_accessor reference_store_id: ::String
|
708
|
+
attr_accessor range: ::String
|
709
|
+
attr_accessor part_number: ::Integer
|
710
|
+
attr_accessor file: ("SOURCE" | "INDEX")
|
711
|
+
SENSITIVE: []
|
712
|
+
end
|
713
|
+
|
714
|
+
class GetReferenceResponse
|
715
|
+
attr_accessor payload: ::IO
|
716
|
+
SENSITIVE: []
|
717
|
+
end
|
718
|
+
|
719
|
+
class GetReferenceStoreRequest
|
720
|
+
attr_accessor id: ::String
|
721
|
+
SENSITIVE: []
|
722
|
+
end
|
723
|
+
|
724
|
+
class GetReferenceStoreResponse
|
725
|
+
attr_accessor id: ::String
|
726
|
+
attr_accessor arn: ::String
|
727
|
+
attr_accessor name: ::String
|
728
|
+
attr_accessor description: ::String
|
729
|
+
attr_accessor sse_config: Types::SseConfig
|
730
|
+
attr_accessor creation_time: ::Time
|
731
|
+
SENSITIVE: []
|
732
|
+
end
|
733
|
+
|
734
|
+
class GetRunGroupRequest
|
735
|
+
attr_accessor id: ::String
|
736
|
+
SENSITIVE: []
|
737
|
+
end
|
738
|
+
|
739
|
+
class GetRunGroupResponse
|
740
|
+
attr_accessor arn: ::String
|
741
|
+
attr_accessor id: ::String
|
742
|
+
attr_accessor name: ::String
|
743
|
+
attr_accessor max_cpus: ::Integer
|
744
|
+
attr_accessor max_runs: ::Integer
|
745
|
+
attr_accessor max_duration: ::Integer
|
746
|
+
attr_accessor creation_time: ::Time
|
747
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
748
|
+
attr_accessor max_gpus: ::Integer
|
749
|
+
SENSITIVE: []
|
750
|
+
end
|
751
|
+
|
752
|
+
class GetRunRequest
|
753
|
+
attr_accessor id: ::String
|
754
|
+
attr_accessor export: ::Array[("DEFINITION")]
|
755
|
+
SENSITIVE: []
|
756
|
+
end
|
757
|
+
|
758
|
+
class GetRunResponse
|
759
|
+
attr_accessor arn: ::String
|
760
|
+
attr_accessor id: ::String
|
761
|
+
attr_accessor status: ("PENDING" | "STARTING" | "RUNNING" | "STOPPING" | "COMPLETED" | "DELETED" | "CANCELLED" | "FAILED")
|
762
|
+
attr_accessor workflow_id: ::String
|
763
|
+
attr_accessor workflow_type: ("PRIVATE" | "READY2RUN")
|
764
|
+
attr_accessor run_id: ::String
|
765
|
+
attr_accessor role_arn: ::String
|
766
|
+
attr_accessor name: ::String
|
767
|
+
attr_accessor run_group_id: ::String
|
768
|
+
attr_accessor priority: ::Integer
|
769
|
+
attr_accessor definition: ::String
|
770
|
+
attr_accessor digest: ::String
|
771
|
+
attr_accessor parameters: untyped
|
772
|
+
attr_accessor storage_capacity: ::Integer
|
773
|
+
attr_accessor output_uri: ::String
|
774
|
+
attr_accessor log_level: ("OFF" | "FATAL" | "ERROR" | "ALL")
|
775
|
+
attr_accessor resource_digests: ::Hash[::String, ::String]
|
776
|
+
attr_accessor started_by: ::String
|
777
|
+
attr_accessor creation_time: ::Time
|
778
|
+
attr_accessor start_time: ::Time
|
779
|
+
attr_accessor stop_time: ::Time
|
780
|
+
attr_accessor status_message: ::String
|
781
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
782
|
+
attr_accessor accelerators: ("GPU")
|
783
|
+
attr_accessor retention_mode: ("RETAIN" | "REMOVE")
|
784
|
+
attr_accessor failure_reason: ::String
|
785
|
+
attr_accessor log_location: Types::RunLogLocation
|
786
|
+
attr_accessor uuid: ::String
|
787
|
+
attr_accessor run_output_uri: ::String
|
788
|
+
SENSITIVE: []
|
789
|
+
end
|
790
|
+
|
791
|
+
class GetRunTaskRequest
|
792
|
+
attr_accessor id: ::String
|
793
|
+
attr_accessor task_id: ::String
|
794
|
+
SENSITIVE: []
|
795
|
+
end
|
796
|
+
|
797
|
+
class GetRunTaskResponse
|
798
|
+
attr_accessor task_id: ::String
|
799
|
+
attr_accessor status: ("PENDING" | "STARTING" | "RUNNING" | "STOPPING" | "COMPLETED" | "CANCELLED" | "FAILED")
|
800
|
+
attr_accessor name: ::String
|
801
|
+
attr_accessor cpus: ::Integer
|
802
|
+
attr_accessor memory: ::Integer
|
803
|
+
attr_accessor creation_time: ::Time
|
804
|
+
attr_accessor start_time: ::Time
|
805
|
+
attr_accessor stop_time: ::Time
|
806
|
+
attr_accessor status_message: ::String
|
807
|
+
attr_accessor log_stream: ::String
|
808
|
+
attr_accessor gpus: ::Integer
|
809
|
+
attr_accessor instance_type: ::String
|
810
|
+
attr_accessor failure_reason: ::String
|
811
|
+
SENSITIVE: []
|
812
|
+
end
|
813
|
+
|
814
|
+
class GetSequenceStoreRequest
|
815
|
+
attr_accessor id: ::String
|
816
|
+
SENSITIVE: []
|
817
|
+
end
|
818
|
+
|
819
|
+
class GetSequenceStoreResponse
|
820
|
+
attr_accessor id: ::String
|
821
|
+
attr_accessor arn: ::String
|
822
|
+
attr_accessor name: ::String
|
823
|
+
attr_accessor description: ::String
|
824
|
+
attr_accessor sse_config: Types::SseConfig
|
825
|
+
attr_accessor creation_time: ::Time
|
826
|
+
attr_accessor fallback_location: ::String
|
827
|
+
attr_accessor s3_access: Types::SequenceStoreS3Access
|
828
|
+
attr_accessor e_tag_algorithm_family: ("MD5up" | "SHA256up" | "SHA512up")
|
829
|
+
SENSITIVE: []
|
830
|
+
end
|
831
|
+
|
832
|
+
class GetShareRequest
|
833
|
+
attr_accessor share_id: ::String
|
834
|
+
SENSITIVE: []
|
835
|
+
end
|
836
|
+
|
837
|
+
class GetShareResponse
|
838
|
+
attr_accessor share: Types::ShareDetails
|
839
|
+
SENSITIVE: []
|
840
|
+
end
|
841
|
+
|
842
|
+
class GetVariantImportRequest
|
843
|
+
attr_accessor job_id: ::String
|
844
|
+
SENSITIVE: []
|
845
|
+
end
|
846
|
+
|
847
|
+
class GetVariantImportResponse
|
848
|
+
attr_accessor id: ::String
|
849
|
+
attr_accessor destination_name: ::String
|
850
|
+
attr_accessor role_arn: ::String
|
851
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLED" | "COMPLETED" | "FAILED" | "COMPLETED_WITH_FAILURES")
|
852
|
+
attr_accessor status_message: ::String
|
853
|
+
attr_accessor creation_time: ::Time
|
854
|
+
attr_accessor update_time: ::Time
|
855
|
+
attr_accessor completion_time: ::Time
|
856
|
+
attr_accessor items: ::Array[Types::VariantImportItemDetail]
|
857
|
+
attr_accessor run_left_normalization: bool
|
858
|
+
attr_accessor annotation_fields: ::Hash[::String, ::String]
|
859
|
+
SENSITIVE: []
|
860
|
+
end
|
861
|
+
|
862
|
+
class GetVariantStoreRequest
|
863
|
+
attr_accessor name: ::String
|
864
|
+
SENSITIVE: []
|
865
|
+
end
|
866
|
+
|
867
|
+
class GetVariantStoreResponse
|
868
|
+
attr_accessor id: ::String
|
869
|
+
attr_accessor reference: Types::ReferenceItem
|
870
|
+
attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
|
871
|
+
attr_accessor store_arn: ::String
|
872
|
+
attr_accessor name: ::String
|
873
|
+
attr_accessor description: ::String
|
874
|
+
attr_accessor sse_config: Types::SseConfig
|
875
|
+
attr_accessor creation_time: ::Time
|
876
|
+
attr_accessor update_time: ::Time
|
877
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
878
|
+
attr_accessor status_message: ::String
|
879
|
+
attr_accessor store_size_bytes: ::Integer
|
880
|
+
SENSITIVE: []
|
881
|
+
end
|
882
|
+
|
883
|
+
class GetWorkflowRequest
|
884
|
+
attr_accessor id: ::String
|
885
|
+
attr_accessor type: ("PRIVATE" | "READY2RUN")
|
886
|
+
attr_accessor export: ::Array[("DEFINITION")]
|
887
|
+
SENSITIVE: []
|
888
|
+
end
|
889
|
+
|
890
|
+
class GetWorkflowResponse
|
891
|
+
attr_accessor arn: ::String
|
892
|
+
attr_accessor id: ::String
|
893
|
+
attr_accessor status: ("CREATING" | "ACTIVE" | "UPDATING" | "DELETED" | "FAILED" | "INACTIVE")
|
894
|
+
attr_accessor type: ("PRIVATE" | "READY2RUN")
|
895
|
+
attr_accessor name: ::String
|
896
|
+
attr_accessor description: ::String
|
897
|
+
attr_accessor engine: ("WDL" | "NEXTFLOW" | "CWL")
|
898
|
+
attr_accessor definition: ::String
|
899
|
+
attr_accessor main: ::String
|
900
|
+
attr_accessor digest: ::String
|
901
|
+
attr_accessor parameter_template: ::Hash[::String, Types::WorkflowParameter]
|
902
|
+
attr_accessor storage_capacity: ::Integer
|
903
|
+
attr_accessor creation_time: ::Time
|
904
|
+
attr_accessor status_message: ::String
|
905
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
906
|
+
attr_accessor metadata: ::Hash[::String, ::String]
|
907
|
+
attr_accessor accelerators: ("GPU")
|
908
|
+
SENSITIVE: []
|
909
|
+
end
|
910
|
+
|
911
|
+
class ImportReadSetFilter
|
912
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
913
|
+
attr_accessor created_after: ::Time
|
914
|
+
attr_accessor created_before: ::Time
|
915
|
+
SENSITIVE: []
|
916
|
+
end
|
917
|
+
|
918
|
+
class ImportReadSetJobItem
|
919
|
+
attr_accessor id: ::String
|
920
|
+
attr_accessor sequence_store_id: ::String
|
921
|
+
attr_accessor role_arn: ::String
|
922
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
923
|
+
attr_accessor creation_time: ::Time
|
924
|
+
attr_accessor completion_time: ::Time
|
925
|
+
SENSITIVE: []
|
926
|
+
end
|
927
|
+
|
928
|
+
class ImportReadSetSourceItem
|
929
|
+
attr_accessor source_files: Types::SourceFiles
|
930
|
+
attr_accessor source_file_type: ("FASTQ" | "BAM" | "CRAM" | "UBAM")
|
931
|
+
attr_accessor status: ("NOT_STARTED" | "IN_PROGRESS" | "FINISHED" | "FAILED")
|
932
|
+
attr_accessor status_message: ::String
|
933
|
+
attr_accessor subject_id: ::String
|
934
|
+
attr_accessor sample_id: ::String
|
935
|
+
attr_accessor generated_from: ::String
|
936
|
+
attr_accessor reference_arn: ::String
|
937
|
+
attr_accessor name: ::String
|
938
|
+
attr_accessor description: ::String
|
939
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
940
|
+
SENSITIVE: []
|
941
|
+
end
|
942
|
+
|
943
|
+
class ImportReferenceFilter
|
944
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
945
|
+
attr_accessor created_after: ::Time
|
946
|
+
attr_accessor created_before: ::Time
|
947
|
+
SENSITIVE: []
|
948
|
+
end
|
949
|
+
|
950
|
+
class ImportReferenceJobItem
|
951
|
+
attr_accessor id: ::String
|
952
|
+
attr_accessor reference_store_id: ::String
|
953
|
+
attr_accessor role_arn: ::String
|
954
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
955
|
+
attr_accessor creation_time: ::Time
|
956
|
+
attr_accessor completion_time: ::Time
|
957
|
+
SENSITIVE: []
|
958
|
+
end
|
959
|
+
|
960
|
+
class ImportReferenceSourceItem
|
961
|
+
attr_accessor source_file: ::String
|
962
|
+
attr_accessor status: ("NOT_STARTED" | "IN_PROGRESS" | "FINISHED" | "FAILED")
|
963
|
+
attr_accessor status_message: ::String
|
964
|
+
attr_accessor name: ::String
|
965
|
+
attr_accessor description: ::String
|
966
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
967
|
+
SENSITIVE: []
|
968
|
+
end
|
969
|
+
|
970
|
+
class InternalServerException
|
971
|
+
attr_accessor message: ::String
|
972
|
+
SENSITIVE: []
|
973
|
+
end
|
974
|
+
|
975
|
+
class ListAnnotationImportJobsFilter
|
976
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLED" | "COMPLETED" | "FAILED" | "COMPLETED_WITH_FAILURES")
|
977
|
+
attr_accessor store_name: ::String
|
978
|
+
SENSITIVE: []
|
979
|
+
end
|
980
|
+
|
981
|
+
class ListAnnotationImportJobsRequest
|
982
|
+
attr_accessor max_results: ::Integer
|
983
|
+
attr_accessor ids: ::Array[::String]
|
984
|
+
attr_accessor next_token: ::String
|
985
|
+
attr_accessor filter: Types::ListAnnotationImportJobsFilter
|
986
|
+
SENSITIVE: []
|
987
|
+
end
|
988
|
+
|
989
|
+
class ListAnnotationImportJobsResponse
|
990
|
+
attr_accessor annotation_import_jobs: ::Array[Types::AnnotationImportJobItem]
|
991
|
+
attr_accessor next_token: ::String
|
992
|
+
SENSITIVE: []
|
993
|
+
end
|
994
|
+
|
995
|
+
class ListAnnotationStoreVersionsFilter
|
996
|
+
attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
|
997
|
+
SENSITIVE: []
|
998
|
+
end
|
999
|
+
|
1000
|
+
class ListAnnotationStoreVersionsRequest
|
1001
|
+
attr_accessor name: ::String
|
1002
|
+
attr_accessor max_results: ::Integer
|
1003
|
+
attr_accessor next_token: ::String
|
1004
|
+
attr_accessor filter: Types::ListAnnotationStoreVersionsFilter
|
1005
|
+
SENSITIVE: []
|
1006
|
+
end
|
1007
|
+
|
1008
|
+
class ListAnnotationStoreVersionsResponse
|
1009
|
+
attr_accessor annotation_store_versions: ::Array[Types::AnnotationStoreVersionItem]
|
1010
|
+
attr_accessor next_token: ::String
|
1011
|
+
SENSITIVE: []
|
1012
|
+
end
|
1013
|
+
|
1014
|
+
class ListAnnotationStoresFilter
|
1015
|
+
attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
|
1016
|
+
SENSITIVE: []
|
1017
|
+
end
|
1018
|
+
|
1019
|
+
class ListAnnotationStoresRequest
|
1020
|
+
attr_accessor ids: ::Array[::String]
|
1021
|
+
attr_accessor max_results: ::Integer
|
1022
|
+
attr_accessor next_token: ::String
|
1023
|
+
attr_accessor filter: Types::ListAnnotationStoresFilter
|
1024
|
+
SENSITIVE: []
|
1025
|
+
end
|
1026
|
+
|
1027
|
+
class ListAnnotationStoresResponse
|
1028
|
+
attr_accessor annotation_stores: ::Array[Types::AnnotationStoreItem]
|
1029
|
+
attr_accessor next_token: ::String
|
1030
|
+
SENSITIVE: []
|
1031
|
+
end
|
1032
|
+
|
1033
|
+
class ListMultipartReadSetUploadsRequest
|
1034
|
+
attr_accessor sequence_store_id: ::String
|
1035
|
+
attr_accessor max_results: ::Integer
|
1036
|
+
attr_accessor next_token: ::String
|
1037
|
+
SENSITIVE: []
|
1038
|
+
end
|
1039
|
+
|
1040
|
+
class ListMultipartReadSetUploadsResponse
|
1041
|
+
attr_accessor next_token: ::String
|
1042
|
+
attr_accessor uploads: ::Array[Types::MultipartReadSetUploadListItem]
|
1043
|
+
SENSITIVE: []
|
1044
|
+
end
|
1045
|
+
|
1046
|
+
class ListReadSetActivationJobsRequest
|
1047
|
+
attr_accessor sequence_store_id: ::String
|
1048
|
+
attr_accessor max_results: ::Integer
|
1049
|
+
attr_accessor next_token: ::String
|
1050
|
+
attr_accessor filter: Types::ActivateReadSetFilter
|
1051
|
+
SENSITIVE: []
|
1052
|
+
end
|
1053
|
+
|
1054
|
+
class ListReadSetActivationJobsResponse
|
1055
|
+
attr_accessor next_token: ::String
|
1056
|
+
attr_accessor activation_jobs: ::Array[Types::ActivateReadSetJobItem]
|
1057
|
+
SENSITIVE: []
|
1058
|
+
end
|
1059
|
+
|
1060
|
+
class ListReadSetExportJobsRequest
|
1061
|
+
attr_accessor sequence_store_id: ::String
|
1062
|
+
attr_accessor max_results: ::Integer
|
1063
|
+
attr_accessor next_token: ::String
|
1064
|
+
attr_accessor filter: Types::ExportReadSetFilter
|
1065
|
+
SENSITIVE: []
|
1066
|
+
end
|
1067
|
+
|
1068
|
+
class ListReadSetExportJobsResponse
|
1069
|
+
attr_accessor next_token: ::String
|
1070
|
+
attr_accessor export_jobs: ::Array[Types::ExportReadSetJobDetail]
|
1071
|
+
SENSITIVE: []
|
1072
|
+
end
|
1073
|
+
|
1074
|
+
class ListReadSetImportJobsRequest
|
1075
|
+
attr_accessor max_results: ::Integer
|
1076
|
+
attr_accessor next_token: ::String
|
1077
|
+
attr_accessor sequence_store_id: ::String
|
1078
|
+
attr_accessor filter: Types::ImportReadSetFilter
|
1079
|
+
SENSITIVE: []
|
1080
|
+
end
|
1081
|
+
|
1082
|
+
class ListReadSetImportJobsResponse
|
1083
|
+
attr_accessor next_token: ::String
|
1084
|
+
attr_accessor import_jobs: ::Array[Types::ImportReadSetJobItem]
|
1085
|
+
SENSITIVE: []
|
1086
|
+
end
|
1087
|
+
|
1088
|
+
class ListReadSetUploadPartsRequest
|
1089
|
+
attr_accessor sequence_store_id: ::String
|
1090
|
+
attr_accessor upload_id: ::String
|
1091
|
+
attr_accessor part_source: ("SOURCE1" | "SOURCE2")
|
1092
|
+
attr_accessor max_results: ::Integer
|
1093
|
+
attr_accessor next_token: ::String
|
1094
|
+
attr_accessor filter: Types::ReadSetUploadPartListFilter
|
1095
|
+
SENSITIVE: []
|
1096
|
+
end
|
1097
|
+
|
1098
|
+
class ListReadSetUploadPartsResponse
|
1099
|
+
attr_accessor next_token: ::String
|
1100
|
+
attr_accessor parts: ::Array[Types::ReadSetUploadPartListItem]
|
1101
|
+
SENSITIVE: []
|
1102
|
+
end
|
1103
|
+
|
1104
|
+
class ListReadSetsRequest
|
1105
|
+
attr_accessor sequence_store_id: ::String
|
1106
|
+
attr_accessor max_results: ::Integer
|
1107
|
+
attr_accessor next_token: ::String
|
1108
|
+
attr_accessor filter: Types::ReadSetFilter
|
1109
|
+
SENSITIVE: []
|
1110
|
+
end
|
1111
|
+
|
1112
|
+
class ListReadSetsResponse
|
1113
|
+
attr_accessor next_token: ::String
|
1114
|
+
attr_accessor read_sets: ::Array[Types::ReadSetListItem]
|
1115
|
+
SENSITIVE: []
|
1116
|
+
end
|
1117
|
+
|
1118
|
+
class ListReferenceImportJobsRequest
|
1119
|
+
attr_accessor max_results: ::Integer
|
1120
|
+
attr_accessor next_token: ::String
|
1121
|
+
attr_accessor reference_store_id: ::String
|
1122
|
+
attr_accessor filter: Types::ImportReferenceFilter
|
1123
|
+
SENSITIVE: []
|
1124
|
+
end
|
1125
|
+
|
1126
|
+
class ListReferenceImportJobsResponse
|
1127
|
+
attr_accessor next_token: ::String
|
1128
|
+
attr_accessor import_jobs: ::Array[Types::ImportReferenceJobItem]
|
1129
|
+
SENSITIVE: []
|
1130
|
+
end
|
1131
|
+
|
1132
|
+
class ListReferenceStoresRequest
|
1133
|
+
attr_accessor max_results: ::Integer
|
1134
|
+
attr_accessor next_token: ::String
|
1135
|
+
attr_accessor filter: Types::ReferenceStoreFilter
|
1136
|
+
SENSITIVE: []
|
1137
|
+
end
|
1138
|
+
|
1139
|
+
class ListReferenceStoresResponse
|
1140
|
+
attr_accessor next_token: ::String
|
1141
|
+
attr_accessor reference_stores: ::Array[Types::ReferenceStoreDetail]
|
1142
|
+
SENSITIVE: []
|
1143
|
+
end
|
1144
|
+
|
1145
|
+
class ListReferencesRequest
|
1146
|
+
attr_accessor reference_store_id: ::String
|
1147
|
+
attr_accessor max_results: ::Integer
|
1148
|
+
attr_accessor next_token: ::String
|
1149
|
+
attr_accessor filter: Types::ReferenceFilter
|
1150
|
+
SENSITIVE: []
|
1151
|
+
end
|
1152
|
+
|
1153
|
+
class ListReferencesResponse
|
1154
|
+
attr_accessor next_token: ::String
|
1155
|
+
attr_accessor references: ::Array[Types::ReferenceListItem]
|
1156
|
+
SENSITIVE: []
|
1157
|
+
end
|
1158
|
+
|
1159
|
+
class ListRunGroupsRequest
|
1160
|
+
attr_accessor name: ::String
|
1161
|
+
attr_accessor starting_token: ::String
|
1162
|
+
attr_accessor max_results: ::Integer
|
1163
|
+
SENSITIVE: []
|
1164
|
+
end
|
1165
|
+
|
1166
|
+
class ListRunGroupsResponse
|
1167
|
+
attr_accessor items: ::Array[Types::RunGroupListItem]
|
1168
|
+
attr_accessor next_token: ::String
|
1169
|
+
SENSITIVE: []
|
1170
|
+
end
|
1171
|
+
|
1172
|
+
class ListRunTasksRequest
|
1173
|
+
attr_accessor id: ::String
|
1174
|
+
attr_accessor status: ("PENDING" | "STARTING" | "RUNNING" | "STOPPING" | "COMPLETED" | "CANCELLED" | "FAILED")
|
1175
|
+
attr_accessor starting_token: ::String
|
1176
|
+
attr_accessor max_results: ::Integer
|
1177
|
+
SENSITIVE: []
|
1178
|
+
end
|
1179
|
+
|
1180
|
+
class ListRunTasksResponse
|
1181
|
+
attr_accessor items: ::Array[Types::TaskListItem]
|
1182
|
+
attr_accessor next_token: ::String
|
1183
|
+
SENSITIVE: []
|
1184
|
+
end
|
1185
|
+
|
1186
|
+
class ListRunsRequest
|
1187
|
+
attr_accessor name: ::String
|
1188
|
+
attr_accessor run_group_id: ::String
|
1189
|
+
attr_accessor starting_token: ::String
|
1190
|
+
attr_accessor max_results: ::Integer
|
1191
|
+
attr_accessor status: ("PENDING" | "STARTING" | "RUNNING" | "STOPPING" | "COMPLETED" | "DELETED" | "CANCELLED" | "FAILED")
|
1192
|
+
SENSITIVE: []
|
1193
|
+
end
|
1194
|
+
|
1195
|
+
class ListRunsResponse
|
1196
|
+
attr_accessor items: ::Array[Types::RunListItem]
|
1197
|
+
attr_accessor next_token: ::String
|
1198
|
+
SENSITIVE: []
|
1199
|
+
end
|
1200
|
+
|
1201
|
+
class ListSequenceStoresRequest
|
1202
|
+
attr_accessor max_results: ::Integer
|
1203
|
+
attr_accessor next_token: ::String
|
1204
|
+
attr_accessor filter: Types::SequenceStoreFilter
|
1205
|
+
SENSITIVE: []
|
1206
|
+
end
|
1207
|
+
|
1208
|
+
class ListSequenceStoresResponse
|
1209
|
+
attr_accessor next_token: ::String
|
1210
|
+
attr_accessor sequence_stores: ::Array[Types::SequenceStoreDetail]
|
1211
|
+
SENSITIVE: []
|
1212
|
+
end
|
1213
|
+
|
1214
|
+
class ListSharesRequest
|
1215
|
+
attr_accessor resource_owner: ("SELF" | "OTHER")
|
1216
|
+
attr_accessor filter: Types::Filter
|
1217
|
+
attr_accessor next_token: ::String
|
1218
|
+
attr_accessor max_results: ::Integer
|
1219
|
+
SENSITIVE: []
|
1220
|
+
end
|
1221
|
+
|
1222
|
+
class ListSharesResponse
|
1223
|
+
attr_accessor shares: ::Array[Types::ShareDetails]
|
1224
|
+
attr_accessor next_token: ::String
|
1225
|
+
SENSITIVE: []
|
1226
|
+
end
|
1227
|
+
|
1228
|
+
class ListTagsForResourceRequest
|
1229
|
+
attr_accessor resource_arn: ::String
|
1230
|
+
SENSITIVE: []
|
1231
|
+
end
|
1232
|
+
|
1233
|
+
class ListTagsForResourceResponse
|
1234
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
1235
|
+
SENSITIVE: []
|
1236
|
+
end
|
1237
|
+
|
1238
|
+
class ListVariantImportJobsFilter
|
1239
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLED" | "COMPLETED" | "FAILED" | "COMPLETED_WITH_FAILURES")
|
1240
|
+
attr_accessor store_name: ::String
|
1241
|
+
SENSITIVE: []
|
1242
|
+
end
|
1243
|
+
|
1244
|
+
class ListVariantImportJobsRequest
|
1245
|
+
attr_accessor max_results: ::Integer
|
1246
|
+
attr_accessor ids: ::Array[::String]
|
1247
|
+
attr_accessor next_token: ::String
|
1248
|
+
attr_accessor filter: Types::ListVariantImportJobsFilter
|
1249
|
+
SENSITIVE: []
|
1250
|
+
end
|
1251
|
+
|
1252
|
+
class ListVariantImportJobsResponse
|
1253
|
+
attr_accessor variant_import_jobs: ::Array[Types::VariantImportJobItem]
|
1254
|
+
attr_accessor next_token: ::String
|
1255
|
+
SENSITIVE: []
|
1256
|
+
end
|
1257
|
+
|
1258
|
+
class ListVariantStoresFilter
|
1259
|
+
attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
|
1260
|
+
SENSITIVE: []
|
1261
|
+
end
|
1262
|
+
|
1263
|
+
class ListVariantStoresRequest
|
1264
|
+
attr_accessor max_results: ::Integer
|
1265
|
+
attr_accessor ids: ::Array[::String]
|
1266
|
+
attr_accessor next_token: ::String
|
1267
|
+
attr_accessor filter: Types::ListVariantStoresFilter
|
1268
|
+
SENSITIVE: []
|
1269
|
+
end
|
1270
|
+
|
1271
|
+
class ListVariantStoresResponse
|
1272
|
+
attr_accessor variant_stores: ::Array[Types::VariantStoreItem]
|
1273
|
+
attr_accessor next_token: ::String
|
1274
|
+
SENSITIVE: []
|
1275
|
+
end
|
1276
|
+
|
1277
|
+
class ListWorkflowsRequest
|
1278
|
+
attr_accessor type: ("PRIVATE" | "READY2RUN")
|
1279
|
+
attr_accessor name: ::String
|
1280
|
+
attr_accessor starting_token: ::String
|
1281
|
+
attr_accessor max_results: ::Integer
|
1282
|
+
SENSITIVE: []
|
1283
|
+
end
|
1284
|
+
|
1285
|
+
class ListWorkflowsResponse
|
1286
|
+
attr_accessor items: ::Array[Types::WorkflowListItem]
|
1287
|
+
attr_accessor next_token: ::String
|
1288
|
+
SENSITIVE: []
|
1289
|
+
end
|
1290
|
+
|
1291
|
+
class MultipartReadSetUploadListItem
|
1292
|
+
attr_accessor sequence_store_id: ::String
|
1293
|
+
attr_accessor upload_id: ::String
|
1294
|
+
attr_accessor source_file_type: ("FASTQ" | "BAM" | "CRAM" | "UBAM")
|
1295
|
+
attr_accessor subject_id: ::String
|
1296
|
+
attr_accessor sample_id: ::String
|
1297
|
+
attr_accessor generated_from: ::String
|
1298
|
+
attr_accessor reference_arn: ::String
|
1299
|
+
attr_accessor name: ::String
|
1300
|
+
attr_accessor description: ::String
|
1301
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
1302
|
+
attr_accessor creation_time: ::Time
|
1303
|
+
SENSITIVE: []
|
1304
|
+
end
|
1305
|
+
|
1306
|
+
class NotSupportedOperationException
|
1307
|
+
attr_accessor message: ::String
|
1308
|
+
SENSITIVE: []
|
1309
|
+
end
|
1310
|
+
|
1311
|
+
class RangeNotSatisfiableException
|
1312
|
+
attr_accessor message: ::String
|
1313
|
+
SENSITIVE: []
|
1314
|
+
end
|
1315
|
+
|
1316
|
+
class ReadOptions
|
1317
|
+
attr_accessor sep: ::String
|
1318
|
+
attr_accessor encoding: ::String
|
1319
|
+
attr_accessor quote: ::String
|
1320
|
+
attr_accessor quote_all: bool
|
1321
|
+
attr_accessor escape: ::String
|
1322
|
+
attr_accessor escape_quotes: bool
|
1323
|
+
attr_accessor comment: ::String
|
1324
|
+
attr_accessor header: bool
|
1325
|
+
attr_accessor line_sep: ::String
|
1326
|
+
SENSITIVE: []
|
1327
|
+
end
|
1328
|
+
|
1329
|
+
class ReadSetBatchError
|
1330
|
+
attr_accessor id: ::String
|
1331
|
+
attr_accessor code: ::String
|
1332
|
+
attr_accessor message: ::String
|
1333
|
+
SENSITIVE: []
|
1334
|
+
end
|
1335
|
+
|
1336
|
+
class ReadSetFiles
|
1337
|
+
attr_accessor source1: Types::FileInformation
|
1338
|
+
attr_accessor source2: Types::FileInformation
|
1339
|
+
attr_accessor index: Types::FileInformation
|
1340
|
+
SENSITIVE: []
|
1341
|
+
end
|
1342
|
+
|
1343
|
+
class ReadSetFilter
|
1344
|
+
attr_accessor name: ::String
|
1345
|
+
attr_accessor status: ("ARCHIVED" | "ACTIVATING" | "ACTIVE" | "DELETING" | "DELETED" | "PROCESSING_UPLOAD" | "UPLOAD_FAILED")
|
1346
|
+
attr_accessor reference_arn: ::String
|
1347
|
+
attr_accessor created_after: ::Time
|
1348
|
+
attr_accessor created_before: ::Time
|
1349
|
+
attr_accessor sample_id: ::String
|
1350
|
+
attr_accessor subject_id: ::String
|
1351
|
+
attr_accessor generated_from: ::String
|
1352
|
+
attr_accessor creation_type: ("IMPORT" | "UPLOAD")
|
1353
|
+
SENSITIVE: []
|
1354
|
+
end
|
1355
|
+
|
1356
|
+
class ReadSetListItem
|
1357
|
+
attr_accessor id: ::String
|
1358
|
+
attr_accessor arn: ::String
|
1359
|
+
attr_accessor sequence_store_id: ::String
|
1360
|
+
attr_accessor subject_id: ::String
|
1361
|
+
attr_accessor sample_id: ::String
|
1362
|
+
attr_accessor status: ("ARCHIVED" | "ACTIVATING" | "ACTIVE" | "DELETING" | "DELETED" | "PROCESSING_UPLOAD" | "UPLOAD_FAILED")
|
1363
|
+
attr_accessor name: ::String
|
1364
|
+
attr_accessor description: ::String
|
1365
|
+
attr_accessor reference_arn: ::String
|
1366
|
+
attr_accessor file_type: ("FASTQ" | "BAM" | "CRAM" | "UBAM")
|
1367
|
+
attr_accessor sequence_information: Types::SequenceInformation
|
1368
|
+
attr_accessor creation_time: ::Time
|
1369
|
+
attr_accessor status_message: ::String
|
1370
|
+
attr_accessor creation_type: ("IMPORT" | "UPLOAD")
|
1371
|
+
attr_accessor etag: Types::ETag
|
1372
|
+
SENSITIVE: []
|
1373
|
+
end
|
1374
|
+
|
1375
|
+
class ReadSetS3Access
|
1376
|
+
attr_accessor s3_uri: ::String
|
1377
|
+
SENSITIVE: []
|
1378
|
+
end
|
1379
|
+
|
1380
|
+
class ReadSetUploadPartListFilter
|
1381
|
+
attr_accessor created_after: ::Time
|
1382
|
+
attr_accessor created_before: ::Time
|
1383
|
+
SENSITIVE: []
|
1384
|
+
end
|
1385
|
+
|
1386
|
+
class ReadSetUploadPartListItem
|
1387
|
+
attr_accessor part_number: ::Integer
|
1388
|
+
attr_accessor part_size: ::Integer
|
1389
|
+
attr_accessor part_source: ("SOURCE1" | "SOURCE2")
|
1390
|
+
attr_accessor checksum: ::String
|
1391
|
+
attr_accessor creation_time: ::Time
|
1392
|
+
attr_accessor last_updated_time: ::Time
|
1393
|
+
SENSITIVE: []
|
1394
|
+
end
|
1395
|
+
|
1396
|
+
class ReferenceFiles
|
1397
|
+
attr_accessor source: Types::FileInformation
|
1398
|
+
attr_accessor index: Types::FileInformation
|
1399
|
+
SENSITIVE: []
|
1400
|
+
end
|
1401
|
+
|
1402
|
+
class ReferenceFilter
|
1403
|
+
attr_accessor name: ::String
|
1404
|
+
attr_accessor md5: ::String
|
1405
|
+
attr_accessor created_after: ::Time
|
1406
|
+
attr_accessor created_before: ::Time
|
1407
|
+
SENSITIVE: []
|
1408
|
+
end
|
1409
|
+
|
1410
|
+
class ReferenceItem
|
1411
|
+
attr_accessor reference_arn: ::String
|
1412
|
+
attr_accessor unknown: untyped
|
1413
|
+
SENSITIVE: []
|
1414
|
+
|
1415
|
+
class ReferenceArn < ReferenceItem
|
1416
|
+
end
|
1417
|
+
class Unknown < ReferenceItem
|
1418
|
+
end
|
1419
|
+
end
|
1420
|
+
|
1421
|
+
class ReferenceListItem
|
1422
|
+
attr_accessor id: ::String
|
1423
|
+
attr_accessor arn: ::String
|
1424
|
+
attr_accessor reference_store_id: ::String
|
1425
|
+
attr_accessor md5: ::String
|
1426
|
+
attr_accessor status: ("ACTIVE" | "DELETING" | "DELETED")
|
1427
|
+
attr_accessor name: ::String
|
1428
|
+
attr_accessor description: ::String
|
1429
|
+
attr_accessor creation_time: ::Time
|
1430
|
+
attr_accessor update_time: ::Time
|
1431
|
+
SENSITIVE: []
|
1432
|
+
end
|
1433
|
+
|
1434
|
+
class ReferenceStoreDetail
|
1435
|
+
attr_accessor arn: ::String
|
1436
|
+
attr_accessor id: ::String
|
1437
|
+
attr_accessor name: ::String
|
1438
|
+
attr_accessor description: ::String
|
1439
|
+
attr_accessor sse_config: Types::SseConfig
|
1440
|
+
attr_accessor creation_time: ::Time
|
1441
|
+
SENSITIVE: []
|
1442
|
+
end
|
1443
|
+
|
1444
|
+
class ReferenceStoreFilter
|
1445
|
+
attr_accessor name: ::String
|
1446
|
+
attr_accessor created_after: ::Time
|
1447
|
+
attr_accessor created_before: ::Time
|
1448
|
+
SENSITIVE: []
|
1449
|
+
end
|
1450
|
+
|
1451
|
+
class RequestTimeoutException
|
1452
|
+
attr_accessor message: ::String
|
1453
|
+
SENSITIVE: []
|
1454
|
+
end
|
1455
|
+
|
1456
|
+
class ResourceNotFoundException
|
1457
|
+
attr_accessor message: ::String
|
1458
|
+
SENSITIVE: []
|
1459
|
+
end
|
1460
|
+
|
1461
|
+
class RunGroupListItem
|
1462
|
+
attr_accessor arn: ::String
|
1463
|
+
attr_accessor id: ::String
|
1464
|
+
attr_accessor name: ::String
|
1465
|
+
attr_accessor max_cpus: ::Integer
|
1466
|
+
attr_accessor max_runs: ::Integer
|
1467
|
+
attr_accessor max_duration: ::Integer
|
1468
|
+
attr_accessor creation_time: ::Time
|
1469
|
+
attr_accessor max_gpus: ::Integer
|
1470
|
+
SENSITIVE: []
|
1471
|
+
end
|
1472
|
+
|
1473
|
+
class RunListItem
|
1474
|
+
attr_accessor arn: ::String
|
1475
|
+
attr_accessor id: ::String
|
1476
|
+
attr_accessor status: ("PENDING" | "STARTING" | "RUNNING" | "STOPPING" | "COMPLETED" | "DELETED" | "CANCELLED" | "FAILED")
|
1477
|
+
attr_accessor workflow_id: ::String
|
1478
|
+
attr_accessor name: ::String
|
1479
|
+
attr_accessor priority: ::Integer
|
1480
|
+
attr_accessor storage_capacity: ::Integer
|
1481
|
+
attr_accessor creation_time: ::Time
|
1482
|
+
attr_accessor start_time: ::Time
|
1483
|
+
attr_accessor stop_time: ::Time
|
1484
|
+
SENSITIVE: []
|
1485
|
+
end
|
1486
|
+
|
1487
|
+
class RunLogLocation
|
1488
|
+
attr_accessor engine_log_stream: ::String
|
1489
|
+
attr_accessor run_log_stream: ::String
|
1490
|
+
SENSITIVE: []
|
1491
|
+
end
|
1492
|
+
|
1493
|
+
class SequenceInformation
|
1494
|
+
attr_accessor total_read_count: ::Integer
|
1495
|
+
attr_accessor total_base_count: ::Integer
|
1496
|
+
attr_accessor generated_from: ::String
|
1497
|
+
attr_accessor alignment: ::String
|
1498
|
+
SENSITIVE: []
|
1499
|
+
end
|
1500
|
+
|
1501
|
+
class SequenceStoreDetail
|
1502
|
+
attr_accessor arn: ::String
|
1503
|
+
attr_accessor id: ::String
|
1504
|
+
attr_accessor name: ::String
|
1505
|
+
attr_accessor description: ::String
|
1506
|
+
attr_accessor sse_config: Types::SseConfig
|
1507
|
+
attr_accessor creation_time: ::Time
|
1508
|
+
attr_accessor fallback_location: ::String
|
1509
|
+
attr_accessor e_tag_algorithm_family: ("MD5up" | "SHA256up" | "SHA512up")
|
1510
|
+
SENSITIVE: []
|
1511
|
+
end
|
1512
|
+
|
1513
|
+
class SequenceStoreFilter
|
1514
|
+
attr_accessor name: ::String
|
1515
|
+
attr_accessor created_after: ::Time
|
1516
|
+
attr_accessor created_before: ::Time
|
1517
|
+
SENSITIVE: []
|
1518
|
+
end
|
1519
|
+
|
1520
|
+
class SequenceStoreS3Access
|
1521
|
+
attr_accessor s3_uri: ::String
|
1522
|
+
attr_accessor s3_access_point_arn: ::String
|
1523
|
+
SENSITIVE: []
|
1524
|
+
end
|
1525
|
+
|
1526
|
+
class ServiceQuotaExceededException
|
1527
|
+
attr_accessor message: ::String
|
1528
|
+
SENSITIVE: []
|
1529
|
+
end
|
1530
|
+
|
1531
|
+
class ShareDetails
|
1532
|
+
attr_accessor share_id: ::String
|
1533
|
+
attr_accessor resource_arn: ::String
|
1534
|
+
attr_accessor principal_subscriber: ::String
|
1535
|
+
attr_accessor owner_id: ::String
|
1536
|
+
attr_accessor status: ("PENDING" | "ACTIVATING" | "ACTIVE" | "DELETING" | "DELETED" | "FAILED")
|
1537
|
+
attr_accessor status_message: ::String
|
1538
|
+
attr_accessor share_name: ::String
|
1539
|
+
attr_accessor creation_time: ::Time
|
1540
|
+
attr_accessor update_time: ::Time
|
1541
|
+
SENSITIVE: []
|
1542
|
+
end
|
1543
|
+
|
1544
|
+
class SourceFiles
|
1545
|
+
attr_accessor source1: ::String
|
1546
|
+
attr_accessor source2: ::String
|
1547
|
+
SENSITIVE: []
|
1548
|
+
end
|
1549
|
+
|
1550
|
+
class SseConfig
|
1551
|
+
attr_accessor type: ("KMS")
|
1552
|
+
attr_accessor key_arn: ::String
|
1553
|
+
SENSITIVE: []
|
1554
|
+
end
|
1555
|
+
|
1556
|
+
class StartAnnotationImportRequest
|
1557
|
+
attr_accessor destination_name: ::String
|
1558
|
+
attr_accessor role_arn: ::String
|
1559
|
+
attr_accessor items: ::Array[Types::AnnotationImportItemSource]
|
1560
|
+
attr_accessor version_name: ::String
|
1561
|
+
attr_accessor format_options: Types::FormatOptions
|
1562
|
+
attr_accessor run_left_normalization: bool
|
1563
|
+
attr_accessor annotation_fields: ::Hash[::String, ::String]
|
1564
|
+
SENSITIVE: []
|
1565
|
+
end
|
1566
|
+
|
1567
|
+
class StartAnnotationImportResponse
|
1568
|
+
attr_accessor job_id: ::String
|
1569
|
+
SENSITIVE: []
|
1570
|
+
end
|
1571
|
+
|
1572
|
+
class StartReadSetActivationJobRequest
|
1573
|
+
attr_accessor sequence_store_id: ::String
|
1574
|
+
attr_accessor client_token: ::String
|
1575
|
+
attr_accessor sources: ::Array[Types::StartReadSetActivationJobSourceItem]
|
1576
|
+
SENSITIVE: []
|
1577
|
+
end
|
1578
|
+
|
1579
|
+
class StartReadSetActivationJobResponse
|
1580
|
+
attr_accessor id: ::String
|
1581
|
+
attr_accessor sequence_store_id: ::String
|
1582
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
1583
|
+
attr_accessor creation_time: ::Time
|
1584
|
+
SENSITIVE: []
|
1585
|
+
end
|
1586
|
+
|
1587
|
+
class StartReadSetActivationJobSourceItem
|
1588
|
+
attr_accessor read_set_id: ::String
|
1589
|
+
SENSITIVE: []
|
1590
|
+
end
|
1591
|
+
|
1592
|
+
class StartReadSetExportJobRequest
|
1593
|
+
attr_accessor sequence_store_id: ::String
|
1594
|
+
attr_accessor destination: ::String
|
1595
|
+
attr_accessor role_arn: ::String
|
1596
|
+
attr_accessor client_token: ::String
|
1597
|
+
attr_accessor sources: ::Array[Types::ExportReadSet]
|
1598
|
+
SENSITIVE: []
|
1599
|
+
end
|
1600
|
+
|
1601
|
+
class StartReadSetExportJobResponse
|
1602
|
+
attr_accessor id: ::String
|
1603
|
+
attr_accessor sequence_store_id: ::String
|
1604
|
+
attr_accessor destination: ::String
|
1605
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
1606
|
+
attr_accessor creation_time: ::Time
|
1607
|
+
SENSITIVE: []
|
1608
|
+
end
|
1609
|
+
|
1610
|
+
class StartReadSetImportJobRequest
|
1611
|
+
attr_accessor sequence_store_id: ::String
|
1612
|
+
attr_accessor role_arn: ::String
|
1613
|
+
attr_accessor client_token: ::String
|
1614
|
+
attr_accessor sources: ::Array[Types::StartReadSetImportJobSourceItem]
|
1615
|
+
SENSITIVE: []
|
1616
|
+
end
|
1617
|
+
|
1618
|
+
class StartReadSetImportJobResponse
|
1619
|
+
attr_accessor id: ::String
|
1620
|
+
attr_accessor sequence_store_id: ::String
|
1621
|
+
attr_accessor role_arn: ::String
|
1622
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
1623
|
+
attr_accessor creation_time: ::Time
|
1624
|
+
SENSITIVE: []
|
1625
|
+
end
|
1626
|
+
|
1627
|
+
class StartReadSetImportJobSourceItem
|
1628
|
+
attr_accessor source_files: Types::SourceFiles
|
1629
|
+
attr_accessor source_file_type: ("FASTQ" | "BAM" | "CRAM" | "UBAM")
|
1630
|
+
attr_accessor subject_id: ::String
|
1631
|
+
attr_accessor sample_id: ::String
|
1632
|
+
attr_accessor generated_from: ::String
|
1633
|
+
attr_accessor reference_arn: ::String
|
1634
|
+
attr_accessor name: ::String
|
1635
|
+
attr_accessor description: ::String
|
1636
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
1637
|
+
SENSITIVE: []
|
1638
|
+
end
|
1639
|
+
|
1640
|
+
class StartReferenceImportJobRequest
|
1641
|
+
attr_accessor reference_store_id: ::String
|
1642
|
+
attr_accessor role_arn: ::String
|
1643
|
+
attr_accessor client_token: ::String
|
1644
|
+
attr_accessor sources: ::Array[Types::StartReferenceImportJobSourceItem]
|
1645
|
+
SENSITIVE: []
|
1646
|
+
end
|
1647
|
+
|
1648
|
+
class StartReferenceImportJobResponse
|
1649
|
+
attr_accessor id: ::String
|
1650
|
+
attr_accessor reference_store_id: ::String
|
1651
|
+
attr_accessor role_arn: ::String
|
1652
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLING" | "CANCELLED" | "FAILED" | "COMPLETED" | "COMPLETED_WITH_FAILURES")
|
1653
|
+
attr_accessor creation_time: ::Time
|
1654
|
+
SENSITIVE: []
|
1655
|
+
end
|
1656
|
+
|
1657
|
+
class StartReferenceImportJobSourceItem
|
1658
|
+
attr_accessor source_file: ::String
|
1659
|
+
attr_accessor name: ::String
|
1660
|
+
attr_accessor description: ::String
|
1661
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
1662
|
+
SENSITIVE: []
|
1663
|
+
end
|
1664
|
+
|
1665
|
+
class StartRunRequest
|
1666
|
+
attr_accessor workflow_id: ::String
|
1667
|
+
attr_accessor workflow_type: ("PRIVATE" | "READY2RUN")
|
1668
|
+
attr_accessor run_id: ::String
|
1669
|
+
attr_accessor role_arn: ::String
|
1670
|
+
attr_accessor name: ::String
|
1671
|
+
attr_accessor run_group_id: ::String
|
1672
|
+
attr_accessor priority: ::Integer
|
1673
|
+
attr_accessor parameters: untyped
|
1674
|
+
attr_accessor storage_capacity: ::Integer
|
1675
|
+
attr_accessor output_uri: ::String
|
1676
|
+
attr_accessor log_level: ("OFF" | "FATAL" | "ERROR" | "ALL")
|
1677
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
1678
|
+
attr_accessor request_id: ::String
|
1679
|
+
attr_accessor retention_mode: ("RETAIN" | "REMOVE")
|
1680
|
+
SENSITIVE: []
|
1681
|
+
end
|
1682
|
+
|
1683
|
+
class StartRunResponse
|
1684
|
+
attr_accessor arn: ::String
|
1685
|
+
attr_accessor id: ::String
|
1686
|
+
attr_accessor status: ("PENDING" | "STARTING" | "RUNNING" | "STOPPING" | "COMPLETED" | "DELETED" | "CANCELLED" | "FAILED")
|
1687
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
1688
|
+
attr_accessor uuid: ::String
|
1689
|
+
attr_accessor run_output_uri: ::String
|
1690
|
+
SENSITIVE: []
|
1691
|
+
end
|
1692
|
+
|
1693
|
+
class StartVariantImportRequest
|
1694
|
+
attr_accessor destination_name: ::String
|
1695
|
+
attr_accessor role_arn: ::String
|
1696
|
+
attr_accessor items: ::Array[Types::VariantImportItemSource]
|
1697
|
+
attr_accessor run_left_normalization: bool
|
1698
|
+
attr_accessor annotation_fields: ::Hash[::String, ::String]
|
1699
|
+
SENSITIVE: []
|
1700
|
+
end
|
1701
|
+
|
1702
|
+
class StartVariantImportResponse
|
1703
|
+
attr_accessor job_id: ::String
|
1704
|
+
SENSITIVE: []
|
1705
|
+
end
|
1706
|
+
|
1707
|
+
class StoreOptions
|
1708
|
+
attr_accessor tsv_store_options: Types::TsvStoreOptions
|
1709
|
+
attr_accessor unknown: untyped
|
1710
|
+
SENSITIVE: []
|
1711
|
+
|
1712
|
+
class TsvStoreOptions < StoreOptions
|
1713
|
+
end
|
1714
|
+
class Unknown < StoreOptions
|
1715
|
+
end
|
1716
|
+
end
|
1717
|
+
|
1718
|
+
class TagResourceRequest
|
1719
|
+
attr_accessor resource_arn: ::String
|
1720
|
+
attr_accessor tags: ::Hash[::String, ::String]
|
1721
|
+
SENSITIVE: []
|
1722
|
+
end
|
1723
|
+
|
1724
|
+
class TagResourceResponse < Aws::EmptyStructure
|
1725
|
+
end
|
1726
|
+
|
1727
|
+
class TaskListItem
|
1728
|
+
attr_accessor task_id: ::String
|
1729
|
+
attr_accessor status: ("PENDING" | "STARTING" | "RUNNING" | "STOPPING" | "COMPLETED" | "CANCELLED" | "FAILED")
|
1730
|
+
attr_accessor name: ::String
|
1731
|
+
attr_accessor cpus: ::Integer
|
1732
|
+
attr_accessor memory: ::Integer
|
1733
|
+
attr_accessor creation_time: ::Time
|
1734
|
+
attr_accessor start_time: ::Time
|
1735
|
+
attr_accessor stop_time: ::Time
|
1736
|
+
attr_accessor gpus: ::Integer
|
1737
|
+
attr_accessor instance_type: ::String
|
1738
|
+
SENSITIVE: []
|
1739
|
+
end
|
1740
|
+
|
1741
|
+
class ThrottlingException
|
1742
|
+
attr_accessor message: ::String
|
1743
|
+
SENSITIVE: []
|
1744
|
+
end
|
1745
|
+
|
1746
|
+
class TsvOptions
|
1747
|
+
attr_accessor read_options: Types::ReadOptions
|
1748
|
+
SENSITIVE: []
|
1749
|
+
end
|
1750
|
+
|
1751
|
+
class TsvStoreOptions
|
1752
|
+
attr_accessor annotation_type: ("GENERIC" | "CHR_POS" | "CHR_POS_REF_ALT" | "CHR_START_END_ONE_BASE" | "CHR_START_END_REF_ALT_ONE_BASE" | "CHR_START_END_ZERO_BASE" | "CHR_START_END_REF_ALT_ZERO_BASE")
|
1753
|
+
attr_accessor format_to_header: ::Hash[("CHR" | "START" | "END" | "REF" | "ALT" | "POS"), ::String]
|
1754
|
+
attr_accessor schema: ::Array[::Hash[::String, ("LONG" | "INT" | "STRING" | "FLOAT" | "DOUBLE" | "BOOLEAN")]]
|
1755
|
+
SENSITIVE: []
|
1756
|
+
end
|
1757
|
+
|
1758
|
+
class TsvVersionOptions
|
1759
|
+
attr_accessor annotation_type: ("GENERIC" | "CHR_POS" | "CHR_POS_REF_ALT" | "CHR_START_END_ONE_BASE" | "CHR_START_END_REF_ALT_ONE_BASE" | "CHR_START_END_ZERO_BASE" | "CHR_START_END_REF_ALT_ZERO_BASE")
|
1760
|
+
attr_accessor format_to_header: ::Hash[("CHR" | "START" | "END" | "REF" | "ALT" | "POS"), ::String]
|
1761
|
+
attr_accessor schema: ::Array[::Hash[::String, ("LONG" | "INT" | "STRING" | "FLOAT" | "DOUBLE" | "BOOLEAN")]]
|
1762
|
+
SENSITIVE: []
|
1763
|
+
end
|
1764
|
+
|
1765
|
+
class UntagResourceRequest
|
1766
|
+
attr_accessor resource_arn: ::String
|
1767
|
+
attr_accessor tag_keys: ::Array[::String]
|
1768
|
+
SENSITIVE: []
|
1769
|
+
end
|
1770
|
+
|
1771
|
+
class UntagResourceResponse < Aws::EmptyStructure
|
1772
|
+
end
|
1773
|
+
|
1774
|
+
class UpdateAnnotationStoreRequest
|
1775
|
+
attr_accessor name: ::String
|
1776
|
+
attr_accessor description: ::String
|
1777
|
+
SENSITIVE: []
|
1778
|
+
end
|
1779
|
+
|
1780
|
+
class UpdateAnnotationStoreResponse
|
1781
|
+
attr_accessor id: ::String
|
1782
|
+
attr_accessor reference: Types::ReferenceItem
|
1783
|
+
attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
|
1784
|
+
attr_accessor name: ::String
|
1785
|
+
attr_accessor description: ::String
|
1786
|
+
attr_accessor creation_time: ::Time
|
1787
|
+
attr_accessor update_time: ::Time
|
1788
|
+
attr_accessor store_options: Types::StoreOptions
|
1789
|
+
attr_accessor store_format: ("GFF" | "TSV" | "VCF")
|
1790
|
+
SENSITIVE: []
|
1791
|
+
end
|
1792
|
+
|
1793
|
+
class UpdateAnnotationStoreVersionRequest
|
1794
|
+
attr_accessor name: ::String
|
1795
|
+
attr_accessor version_name: ::String
|
1796
|
+
attr_accessor description: ::String
|
1797
|
+
SENSITIVE: []
|
1798
|
+
end
|
1799
|
+
|
1800
|
+
class UpdateAnnotationStoreVersionResponse
|
1801
|
+
attr_accessor store_id: ::String
|
1802
|
+
attr_accessor id: ::String
|
1803
|
+
attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
|
1804
|
+
attr_accessor name: ::String
|
1805
|
+
attr_accessor version_name: ::String
|
1806
|
+
attr_accessor description: ::String
|
1807
|
+
attr_accessor creation_time: ::Time
|
1808
|
+
attr_accessor update_time: ::Time
|
1809
|
+
SENSITIVE: []
|
1810
|
+
end
|
1811
|
+
|
1812
|
+
class UpdateRunGroupRequest
|
1813
|
+
attr_accessor id: ::String
|
1814
|
+
attr_accessor name: ::String
|
1815
|
+
attr_accessor max_cpus: ::Integer
|
1816
|
+
attr_accessor max_runs: ::Integer
|
1817
|
+
attr_accessor max_duration: ::Integer
|
1818
|
+
attr_accessor max_gpus: ::Integer
|
1819
|
+
SENSITIVE: []
|
1820
|
+
end
|
1821
|
+
|
1822
|
+
class UpdateVariantStoreRequest
|
1823
|
+
attr_accessor name: ::String
|
1824
|
+
attr_accessor description: ::String
|
1825
|
+
SENSITIVE: []
|
1826
|
+
end
|
1827
|
+
|
1828
|
+
class UpdateVariantStoreResponse
|
1829
|
+
attr_accessor id: ::String
|
1830
|
+
attr_accessor reference: Types::ReferenceItem
|
1831
|
+
attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
|
1832
|
+
attr_accessor name: ::String
|
1833
|
+
attr_accessor description: ::String
|
1834
|
+
attr_accessor creation_time: ::Time
|
1835
|
+
attr_accessor update_time: ::Time
|
1836
|
+
SENSITIVE: []
|
1837
|
+
end
|
1838
|
+
|
1839
|
+
class UpdateWorkflowRequest
|
1840
|
+
attr_accessor id: ::String
|
1841
|
+
attr_accessor name: ::String
|
1842
|
+
attr_accessor description: ::String
|
1843
|
+
SENSITIVE: []
|
1844
|
+
end
|
1845
|
+
|
1846
|
+
class UploadReadSetPartRequest
|
1847
|
+
attr_accessor sequence_store_id: ::String
|
1848
|
+
attr_accessor upload_id: ::String
|
1849
|
+
attr_accessor part_source: ("SOURCE1" | "SOURCE2")
|
1850
|
+
attr_accessor part_number: ::Integer
|
1851
|
+
attr_accessor payload: ::IO
|
1852
|
+
SENSITIVE: []
|
1853
|
+
end
|
1854
|
+
|
1855
|
+
class UploadReadSetPartResponse
|
1856
|
+
attr_accessor checksum: ::String
|
1857
|
+
SENSITIVE: []
|
1858
|
+
end
|
1859
|
+
|
1860
|
+
class ValidationException
|
1861
|
+
attr_accessor message: ::String
|
1862
|
+
SENSITIVE: []
|
1863
|
+
end
|
1864
|
+
|
1865
|
+
class VariantImportItemDetail
|
1866
|
+
attr_accessor source: ::String
|
1867
|
+
attr_accessor job_status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLED" | "COMPLETED" | "FAILED" | "COMPLETED_WITH_FAILURES")
|
1868
|
+
attr_accessor status_message: ::String
|
1869
|
+
SENSITIVE: []
|
1870
|
+
end
|
1871
|
+
|
1872
|
+
class VariantImportItemSource
|
1873
|
+
attr_accessor source: ::String
|
1874
|
+
SENSITIVE: []
|
1875
|
+
end
|
1876
|
+
|
1877
|
+
class VariantImportJobItem
|
1878
|
+
attr_accessor id: ::String
|
1879
|
+
attr_accessor destination_name: ::String
|
1880
|
+
attr_accessor role_arn: ::String
|
1881
|
+
attr_accessor status: ("SUBMITTED" | "IN_PROGRESS" | "CANCELLED" | "COMPLETED" | "FAILED" | "COMPLETED_WITH_FAILURES")
|
1882
|
+
attr_accessor creation_time: ::Time
|
1883
|
+
attr_accessor update_time: ::Time
|
1884
|
+
attr_accessor completion_time: ::Time
|
1885
|
+
attr_accessor run_left_normalization: bool
|
1886
|
+
attr_accessor annotation_fields: ::Hash[::String, ::String]
|
1887
|
+
SENSITIVE: []
|
1888
|
+
end
|
1889
|
+
|
1890
|
+
class VariantStoreItem
|
1891
|
+
attr_accessor id: ::String
|
1892
|
+
attr_accessor reference: Types::ReferenceItem
|
1893
|
+
attr_accessor status: ("CREATING" | "UPDATING" | "DELETING" | "ACTIVE" | "FAILED")
|
1894
|
+
attr_accessor store_arn: ::String
|
1895
|
+
attr_accessor name: ::String
|
1896
|
+
attr_accessor description: ::String
|
1897
|
+
attr_accessor sse_config: Types::SseConfig
|
1898
|
+
attr_accessor creation_time: ::Time
|
1899
|
+
attr_accessor update_time: ::Time
|
1900
|
+
attr_accessor status_message: ::String
|
1901
|
+
attr_accessor store_size_bytes: ::Integer
|
1902
|
+
SENSITIVE: []
|
1903
|
+
end
|
1904
|
+
|
1905
|
+
class VcfOptions
|
1906
|
+
attr_accessor ignore_qual_field: bool
|
1907
|
+
attr_accessor ignore_filter_field: bool
|
1908
|
+
SENSITIVE: []
|
1909
|
+
end
|
1910
|
+
|
1911
|
+
class VersionDeleteError
|
1912
|
+
attr_accessor version_name: ::String
|
1913
|
+
attr_accessor message: ::String
|
1914
|
+
SENSITIVE: []
|
1915
|
+
end
|
1916
|
+
|
1917
|
+
class VersionOptions
|
1918
|
+
attr_accessor tsv_version_options: Types::TsvVersionOptions
|
1919
|
+
attr_accessor unknown: untyped
|
1920
|
+
SENSITIVE: []
|
1921
|
+
|
1922
|
+
class TsvVersionOptions < VersionOptions
|
1923
|
+
end
|
1924
|
+
class Unknown < VersionOptions
|
1925
|
+
end
|
1926
|
+
end
|
1927
|
+
|
1928
|
+
class WorkflowListItem
|
1929
|
+
attr_accessor arn: ::String
|
1930
|
+
attr_accessor id: ::String
|
1931
|
+
attr_accessor name: ::String
|
1932
|
+
attr_accessor status: ("CREATING" | "ACTIVE" | "UPDATING" | "DELETED" | "FAILED" | "INACTIVE")
|
1933
|
+
attr_accessor type: ("PRIVATE" | "READY2RUN")
|
1934
|
+
attr_accessor digest: ::String
|
1935
|
+
attr_accessor creation_time: ::Time
|
1936
|
+
attr_accessor metadata: ::Hash[::String, ::String]
|
1937
|
+
SENSITIVE: []
|
1938
|
+
end
|
1939
|
+
|
1940
|
+
class WorkflowParameter
|
1941
|
+
attr_accessor description: ::String
|
1942
|
+
attr_accessor optional: bool
|
1943
|
+
SENSITIVE: []
|
1944
|
+
end
|
1945
|
+
end
|
1946
|
+
end
|