aws-sdk-omics 1.11.0 → 1.13.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/CHANGELOG.md +10 -0
- data/VERSION +1 -1
- data/lib/aws-sdk-omics/client.rb +537 -25
- data/lib/aws-sdk-omics/client_api.rb +425 -15
- data/lib/aws-sdk-omics/endpoints.rb +140 -0
- data/lib/aws-sdk-omics/plugins/endpoints.rb +20 -0
- data/lib/aws-sdk-omics/types.rb +762 -6
- data/lib/aws-sdk-omics/waiters.rb +126 -17
- data/lib/aws-sdk-omics.rb +1 -1
- metadata +2 -2
data/lib/aws-sdk-omics/client.rb
CHANGED
@@ -414,6 +414,34 @@ module Aws::Omics
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req.send_request(options)
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end
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# Accepts a share for an analytics store.
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#
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# @option params [required, String] :share_id
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# The ID for a share offer for analytics store data.
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#
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# @return [Types::AcceptShareResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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#
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# * {Types::AcceptShareResponse#status #status} => String
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#
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# @example Request syntax with placeholder values
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#
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# resp = client.accept_share({
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# share_id: "String", # required
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# })
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#
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# @example Response structure
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#
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# resp.status #=> String, one of "PENDING", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "FAILED"
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/AcceptShare AWS API Documentation
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#
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# @overload accept_share(params = {})
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# @param [Hash] params ({})
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def accept_share(params = {}, options = {})
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req = build_request(:accept_share, params)
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req.send_request(options)
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end
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# Deletes one or more read sets.
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#
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# @option params [required, Array<String>] :ids
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@@ -572,6 +600,10 @@ module Aws::Omics
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# @option params [Hash<String,String>] :tags
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# Tags for the store.
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#
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# @option params [String] :version_name
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# The name given to an annotation store version to distinguish it from
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# other versions.
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#
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# @option params [Types::SseConfig] :sse_config
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# Server-side encryption (SSE) settings for the store.
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#
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@@ -589,6 +621,7 @@ module Aws::Omics
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# * {Types::CreateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions
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# * {Types::CreateAnnotationStoreResponse#status #status} => String
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# * {Types::CreateAnnotationStoreResponse#name #name} => String
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# * {Types::CreateAnnotationStoreResponse#version_name #version_name} => String
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# * {Types::CreateAnnotationStoreResponse#creation_time #creation_time} => Time
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#
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# @example Request syntax with placeholder values
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@@ -597,11 +630,12 @@ module Aws::Omics
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# reference: {
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# reference_arn: "ReferenceArn",
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# },
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-
# name: "
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-
# description: "
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# name: "StoreName",
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# description: "Description",
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# tags: {
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# "TagKey" => "TagValue",
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# },
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# version_name: "VersionName",
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# sse_config: {
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# type: "KMS", # required, accepts KMS
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# key_arn: "SseConfigKeyArnString",
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@@ -635,6 +669,7 @@ module Aws::Omics
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# resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
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# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
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# resp.name #=> String
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# resp.version_name #=> String
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# resp.creation_time #=> Time
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateAnnotationStore AWS API Documentation
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@@ -646,6 +681,83 @@ module Aws::Omics
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req.send_request(options)
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end
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# Creates a new version of an annotation store.
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#
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# @option params [required, String] :name
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# The name of an annotation store version from which versions are being
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# created.
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#
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# @option params [required, String] :version_name
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# The name given to an annotation store version to distinguish it from
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# other versions.
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#
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# @option params [String] :description
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# The description of an annotation store version.
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#
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# @option params [Types::VersionOptions] :version_options
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# The options for an annotation store version.
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#
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# @option params [Hash<String,String>] :tags
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# Any tags added to annotation store version.
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#
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# @return [Types::CreateAnnotationStoreVersionResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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#
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# * {Types::CreateAnnotationStoreVersionResponse#id #id} => String
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# * {Types::CreateAnnotationStoreVersionResponse#version_name #version_name} => String
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# * {Types::CreateAnnotationStoreVersionResponse#store_id #store_id} => String
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# * {Types::CreateAnnotationStoreVersionResponse#version_options #version_options} => Types::VersionOptions
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# * {Types::CreateAnnotationStoreVersionResponse#name #name} => String
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# * {Types::CreateAnnotationStoreVersionResponse#status #status} => String
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# * {Types::CreateAnnotationStoreVersionResponse#creation_time #creation_time} => Time
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#
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# @example Request syntax with placeholder values
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#
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# resp = client.create_annotation_store_version({
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# name: "StoreName", # required
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# version_name: "VersionName", # required
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# description: "Description",
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# version_options: {
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# tsv_version_options: {
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# annotation_type: "GENERIC", # accepts GENERIC, CHR_POS, CHR_POS_REF_ALT, CHR_START_END_ONE_BASE, CHR_START_END_REF_ALT_ONE_BASE, CHR_START_END_ZERO_BASE, CHR_START_END_REF_ALT_ZERO_BASE
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# format_to_header: {
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# "CHR" => "FormatToHeaderValueString",
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# },
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# schema: [
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# {
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# "SchemaItemKeyString" => "LONG", # accepts LONG, INT, STRING, FLOAT, DOUBLE, BOOLEAN
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# },
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# ],
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# },
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# },
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# tags: {
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# "TagKey" => "TagValue",
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# },
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# })
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#
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# @example Response structure
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#
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# resp.id #=> String
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# resp.version_name #=> String
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# resp.store_id #=> String
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# resp.version_options.tsv_version_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
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# resp.version_options.tsv_version_options.format_to_header #=> Hash
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# resp.version_options.tsv_version_options.format_to_header["FormatToHeaderKey"] #=> String
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# resp.version_options.tsv_version_options.schema #=> Array
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# resp.version_options.tsv_version_options.schema[0] #=> Hash
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# resp.version_options.tsv_version_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
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# resp.name #=> String
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# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
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# resp.creation_time #=> Time
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateAnnotationStoreVersion AWS API Documentation
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#
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# @overload create_annotation_store_version(params = {})
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# @param [Hash] params ({})
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def create_annotation_store_version(params = {}, options = {})
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req = build_request(:create_annotation_store_version, params)
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req.send_request(options)
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end
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# Begins a multipart read set upload.
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#
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# @option params [required, String] :sequence_store_id
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@@ -927,6 +1039,49 @@ module Aws::Omics
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req.send_request(options)
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end
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# Creates a share offer that can be accepted outside the account by a
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# subscriber. The share is created by the owner and accepted by the
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# principal subscriber.
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#
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# @option params [required, String] :resource_arn
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# The resource ARN for the analytics store to be shared.
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#
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# @option params [required, String] :principal_subscriber
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# The principal subscriber is the account being given access to the
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# analytics store data through the share offer.
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#
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# @option params [String] :share_name
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# A name given to the share.
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#
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# @return [Types::CreateShareResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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#
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# * {Types::CreateShareResponse#share_id #share_id} => String
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# * {Types::CreateShareResponse#status #status} => String
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# * {Types::CreateShareResponse#share_name #share_name} => String
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#
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# @example Request syntax with placeholder values
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#
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# resp = client.create_share({
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# resource_arn: "String", # required
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# principal_subscriber: "String", # required
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# share_name: "ShareName",
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# })
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#
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# @example Response structure
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#
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# resp.share_id #=> String
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# resp.status #=> String, one of "PENDING", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "FAILED"
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# resp.share_name #=> String
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateShare AWS API Documentation
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#
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# @overload create_share(params = {})
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# @param [Hash] params ({})
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def create_share(params = {}, options = {})
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req = build_request(:create_share, params)
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req.send_request(options)
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end
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# Creates a variant store.
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#
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# @option params [required, Types::ReferenceItem] :reference
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# reference: { # required
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# reference_arn: "ReferenceArn",
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# },
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# name: "
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# description: "
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# name: "StoreName",
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# description: "Description",
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# tags: {
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# "TagKey" => "TagValue",
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# },
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@@ -1104,6 +1259,46 @@ module Aws::Omics
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req.send_request(options)
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end
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# Deletes one or multiple versions of an annotation store.
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#
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# @option params [required, String] :name
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# The name of the annotation store from which versions are being
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# deleted.
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#
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# @option params [required, Array<String>] :versions
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# The versions of an annotation store to be deleted.
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#
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# @option params [Boolean] :force
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# Forces the deletion of an annotation store version when imports are
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# in-progress..
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#
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# @return [Types::DeleteAnnotationStoreVersionsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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#
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# * {Types::DeleteAnnotationStoreVersionsResponse#errors #errors} => Array<Types::VersionDeleteError>
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#
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# @example Request syntax with placeholder values
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#
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# resp = client.delete_annotation_store_versions({
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# name: "String", # required
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# versions: ["VersionName"], # required
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# force: false,
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# })
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#
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# @example Response structure
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#
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# resp.errors #=> Array
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# resp.errors[0].version_name #=> String
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# resp.errors[0].message #=> String
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteAnnotationStoreVersions AWS API Documentation
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#
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# @overload delete_annotation_store_versions(params = {})
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# @param [Hash] params ({})
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def delete_annotation_store_versions(params = {}, options = {})
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req = build_request(:delete_annotation_store_versions, params)
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req.send_request(options)
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end
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# Deletes a genome reference.
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#
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# @option params [required, String] :id
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@@ -1218,6 +1413,34 @@ module Aws::Omics
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req.send_request(options)
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end
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# Deletes a share of an analytics store.
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#
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# @option params [required, String] :share_id
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# The ID for the share request to be deleted.
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#
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# @return [Types::DeleteShareResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
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#
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# * {Types::DeleteShareResponse#status #status} => String
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#
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# @example Request syntax with placeholder values
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#
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# resp = client.delete_share({
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# share_id: "String", # required
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# })
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#
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# @example Response structure
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#
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# resp.status #=> String, one of "PENDING", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "FAILED"
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#
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# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteShare AWS API Documentation
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#
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# @overload delete_share(params = {})
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# @param [Hash] params ({})
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def delete_share(params = {}, options = {})
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req = build_request(:delete_share, params)
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req.send_request(options)
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end
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# Deletes a variant store.
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#
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# @option params [required, String] :name
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@@ -1281,6 +1504,7 @@ module Aws::Omics
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#
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# * {Types::GetAnnotationImportResponse#id #id} => String
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# * {Types::GetAnnotationImportResponse#destination_name #destination_name} => String
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# * {Types::GetAnnotationImportResponse#version_name #version_name} => String
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# * {Types::GetAnnotationImportResponse#role_arn #role_arn} => String
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# * {Types::GetAnnotationImportResponse#status #status} => String
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# * {Types::GetAnnotationImportResponse#status_message #status_message} => String
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@@ -1302,6 +1526,7 @@ module Aws::Omics
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#
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# resp.id #=> String
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# resp.destination_name #=> String
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# resp.version_name #=> String
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# resp.role_arn #=> String
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# resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
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# resp.status_message #=> String
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@@ -1361,6 +1586,7 @@ module Aws::Omics
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# * {Types::GetAnnotationStoreResponse#store_format #store_format} => String
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|
# * {Types::GetAnnotationStoreResponse#status_message #status_message} => String
|
1363
1588
|
# * {Types::GetAnnotationStoreResponse#store_size_bytes #store_size_bytes} => Integer
|
1589
|
+
# * {Types::GetAnnotationStoreResponse#num_versions #num_versions} => Integer
|
1364
1590
|
#
|
1365
1591
|
# @example Request syntax with placeholder values
|
1366
1592
|
#
|
@@ -1391,6 +1617,7 @@ module Aws::Omics
|
|
1391
1617
|
# resp.store_format #=> String, one of "GFF", "TSV", "VCF"
|
1392
1618
|
# resp.status_message #=> String
|
1393
1619
|
# resp.store_size_bytes #=> Integer
|
1620
|
+
# resp.num_versions #=> Integer
|
1394
1621
|
#
|
1395
1622
|
#
|
1396
1623
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -1407,6 +1634,76 @@ module Aws::Omics
|
|
1407
1634
|
req.send_request(options)
|
1408
1635
|
end
|
1409
1636
|
|
1637
|
+
# Retrieves the metadata for an annotation store version.
|
1638
|
+
#
|
1639
|
+
# @option params [required, String] :name
|
1640
|
+
# The name given to an annotation store version to distinguish it from
|
1641
|
+
# others.
|
1642
|
+
#
|
1643
|
+
# @option params [required, String] :version_name
|
1644
|
+
# The name given to an annotation store version to distinguish it from
|
1645
|
+
# others.
|
1646
|
+
#
|
1647
|
+
# @return [Types::GetAnnotationStoreVersionResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
1648
|
+
#
|
1649
|
+
# * {Types::GetAnnotationStoreVersionResponse#store_id #store_id} => String
|
1650
|
+
# * {Types::GetAnnotationStoreVersionResponse#id #id} => String
|
1651
|
+
# * {Types::GetAnnotationStoreVersionResponse#status #status} => String
|
1652
|
+
# * {Types::GetAnnotationStoreVersionResponse#version_arn #version_arn} => String
|
1653
|
+
# * {Types::GetAnnotationStoreVersionResponse#name #name} => String
|
1654
|
+
# * {Types::GetAnnotationStoreVersionResponse#version_name #version_name} => String
|
1655
|
+
# * {Types::GetAnnotationStoreVersionResponse#description #description} => String
|
1656
|
+
# * {Types::GetAnnotationStoreVersionResponse#creation_time #creation_time} => Time
|
1657
|
+
# * {Types::GetAnnotationStoreVersionResponse#update_time #update_time} => Time
|
1658
|
+
# * {Types::GetAnnotationStoreVersionResponse#tags #tags} => Hash<String,String>
|
1659
|
+
# * {Types::GetAnnotationStoreVersionResponse#version_options #version_options} => Types::VersionOptions
|
1660
|
+
# * {Types::GetAnnotationStoreVersionResponse#status_message #status_message} => String
|
1661
|
+
# * {Types::GetAnnotationStoreVersionResponse#version_size_bytes #version_size_bytes} => Integer
|
1662
|
+
#
|
1663
|
+
# @example Request syntax with placeholder values
|
1664
|
+
#
|
1665
|
+
# resp = client.get_annotation_store_version({
|
1666
|
+
# name: "String", # required
|
1667
|
+
# version_name: "String", # required
|
1668
|
+
# })
|
1669
|
+
#
|
1670
|
+
# @example Response structure
|
1671
|
+
#
|
1672
|
+
# resp.store_id #=> String
|
1673
|
+
# resp.id #=> String
|
1674
|
+
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
1675
|
+
# resp.version_arn #=> String
|
1676
|
+
# resp.name #=> String
|
1677
|
+
# resp.version_name #=> String
|
1678
|
+
# resp.description #=> String
|
1679
|
+
# resp.creation_time #=> Time
|
1680
|
+
# resp.update_time #=> Time
|
1681
|
+
# resp.tags #=> Hash
|
1682
|
+
# resp.tags["TagKey"] #=> String
|
1683
|
+
# resp.version_options.tsv_version_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE"
|
1684
|
+
# resp.version_options.tsv_version_options.format_to_header #=> Hash
|
1685
|
+
# resp.version_options.tsv_version_options.format_to_header["FormatToHeaderKey"] #=> String
|
1686
|
+
# resp.version_options.tsv_version_options.schema #=> Array
|
1687
|
+
# resp.version_options.tsv_version_options.schema[0] #=> Hash
|
1688
|
+
# resp.version_options.tsv_version_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN"
|
1689
|
+
# resp.status_message #=> String
|
1690
|
+
# resp.version_size_bytes #=> Integer
|
1691
|
+
#
|
1692
|
+
#
|
1693
|
+
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
1694
|
+
#
|
1695
|
+
# * annotation_store_version_created
|
1696
|
+
# * annotation_store_version_deleted
|
1697
|
+
#
|
1698
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetAnnotationStoreVersion AWS API Documentation
|
1699
|
+
#
|
1700
|
+
# @overload get_annotation_store_version(params = {})
|
1701
|
+
# @param [Hash] params ({})
|
1702
|
+
def get_annotation_store_version(params = {}, options = {})
|
1703
|
+
req = build_request(:get_annotation_store_version, params)
|
1704
|
+
req.send_request(options)
|
1705
|
+
end
|
1706
|
+
|
1410
1707
|
# Gets a file from a read set.
|
1411
1708
|
#
|
1412
1709
|
# @option params [required, String] :id
|
@@ -2035,6 +2332,7 @@ module Aws::Omics
|
|
2035
2332
|
# * {Types::GetRunTaskResponse#status_message #status_message} => String
|
2036
2333
|
# * {Types::GetRunTaskResponse#log_stream #log_stream} => String
|
2037
2334
|
# * {Types::GetRunTaskResponse#gpus #gpus} => Integer
|
2335
|
+
# * {Types::GetRunTaskResponse#instance_type #instance_type} => String
|
2038
2336
|
#
|
2039
2337
|
# @example Request syntax with placeholder values
|
2040
2338
|
#
|
@@ -2056,6 +2354,7 @@ module Aws::Omics
|
|
2056
2354
|
# resp.status_message #=> String
|
2057
2355
|
# resp.log_stream #=> String
|
2058
2356
|
# resp.gpus #=> Integer
|
2357
|
+
# resp.instance_type #=> String
|
2059
2358
|
#
|
2060
2359
|
#
|
2061
2360
|
# The following waiters are defined for this operation (see {Client#wait_until} for detailed usage):
|
@@ -2113,6 +2412,42 @@ module Aws::Omics
|
|
2113
2412
|
req.send_request(options)
|
2114
2413
|
end
|
2115
2414
|
|
2415
|
+
# Retrieves the metadata for a share.
|
2416
|
+
#
|
2417
|
+
# @option params [required, String] :share_id
|
2418
|
+
# The generated ID for a share.
|
2419
|
+
#
|
2420
|
+
# @return [Types::GetShareResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2421
|
+
#
|
2422
|
+
# * {Types::GetShareResponse#share #share} => Types::ShareDetails
|
2423
|
+
#
|
2424
|
+
# @example Request syntax with placeholder values
|
2425
|
+
#
|
2426
|
+
# resp = client.get_share({
|
2427
|
+
# share_id: "String", # required
|
2428
|
+
# })
|
2429
|
+
#
|
2430
|
+
# @example Response structure
|
2431
|
+
#
|
2432
|
+
# resp.share.share_id #=> String
|
2433
|
+
# resp.share.resource_arn #=> String
|
2434
|
+
# resp.share.principal_subscriber #=> String
|
2435
|
+
# resp.share.owner_id #=> String
|
2436
|
+
# resp.share.status #=> String, one of "PENDING", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "FAILED"
|
2437
|
+
# resp.share.status_message #=> String
|
2438
|
+
# resp.share.share_name #=> String
|
2439
|
+
# resp.share.creation_time #=> Time
|
2440
|
+
# resp.share.update_time #=> Time
|
2441
|
+
#
|
2442
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetShare AWS API Documentation
|
2443
|
+
#
|
2444
|
+
# @overload get_share(params = {})
|
2445
|
+
# @param [Hash] params ({})
|
2446
|
+
def get_share(params = {}, options = {})
|
2447
|
+
req = build_request(:get_share, params)
|
2448
|
+
req.send_request(options)
|
2449
|
+
end
|
2450
|
+
|
2116
2451
|
# Gets information about a variant import job.
|
2117
2452
|
#
|
2118
2453
|
# @option params [required, String] :job_id
|
@@ -2314,7 +2649,7 @@ module Aws::Omics
|
|
2314
2649
|
# IDs of annotation import jobs to retrieve.
|
2315
2650
|
#
|
2316
2651
|
# @option params [String] :next_token
|
2317
|
-
#
|
2652
|
+
# Specifies the pagination token from a previous request to retrieve the
|
2318
2653
|
# next page of results.
|
2319
2654
|
#
|
2320
2655
|
# @option params [Types::ListAnnotationImportJobsFilter] :filter
|
@@ -2344,6 +2679,7 @@ module Aws::Omics
|
|
2344
2679
|
# resp.annotation_import_jobs #=> Array
|
2345
2680
|
# resp.annotation_import_jobs[0].id #=> String
|
2346
2681
|
# resp.annotation_import_jobs[0].destination_name #=> String
|
2682
|
+
# resp.annotation_import_jobs[0].version_name #=> String
|
2347
2683
|
# resp.annotation_import_jobs[0].role_arn #=> String
|
2348
2684
|
# resp.annotation_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES"
|
2349
2685
|
# resp.annotation_import_jobs[0].creation_time #=> Time
|
@@ -2363,6 +2699,65 @@ module Aws::Omics
|
|
2363
2699
|
req.send_request(options)
|
2364
2700
|
end
|
2365
2701
|
|
2702
|
+
# Lists the versions of an annotation store.
|
2703
|
+
#
|
2704
|
+
# @option params [required, String] :name
|
2705
|
+
# The name of an annotation store.
|
2706
|
+
#
|
2707
|
+
# @option params [Integer] :max_results
|
2708
|
+
# The maximum number of annotation store versions to return in one page
|
2709
|
+
# of results.
|
2710
|
+
#
|
2711
|
+
# @option params [String] :next_token
|
2712
|
+
# Specifies the pagination token from a previous request to retrieve the
|
2713
|
+
# next page of results.
|
2714
|
+
#
|
2715
|
+
# @option params [Types::ListAnnotationStoreVersionsFilter] :filter
|
2716
|
+
# A filter to apply to the list of annotation store versions.
|
2717
|
+
#
|
2718
|
+
# @return [Types::ListAnnotationStoreVersionsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
2719
|
+
#
|
2720
|
+
# * {Types::ListAnnotationStoreVersionsResponse#annotation_store_versions #annotation_store_versions} => Array<Types::AnnotationStoreVersionItem>
|
2721
|
+
# * {Types::ListAnnotationStoreVersionsResponse#next_token #next_token} => String
|
2722
|
+
#
|
2723
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
2724
|
+
#
|
2725
|
+
# @example Request syntax with placeholder values
|
2726
|
+
#
|
2727
|
+
# resp = client.list_annotation_store_versions({
|
2728
|
+
# name: "String", # required
|
2729
|
+
# max_results: 1,
|
2730
|
+
# next_token: "ListAnnotationStoreVersionsRequestNextTokenString",
|
2731
|
+
# filter: {
|
2732
|
+
# status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED
|
2733
|
+
# },
|
2734
|
+
# })
|
2735
|
+
#
|
2736
|
+
# @example Response structure
|
2737
|
+
#
|
2738
|
+
# resp.annotation_store_versions #=> Array
|
2739
|
+
# resp.annotation_store_versions[0].store_id #=> String
|
2740
|
+
# resp.annotation_store_versions[0].id #=> String
|
2741
|
+
# resp.annotation_store_versions[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
2742
|
+
# resp.annotation_store_versions[0].version_arn #=> String
|
2743
|
+
# resp.annotation_store_versions[0].name #=> String
|
2744
|
+
# resp.annotation_store_versions[0].version_name #=> String
|
2745
|
+
# resp.annotation_store_versions[0].description #=> String
|
2746
|
+
# resp.annotation_store_versions[0].creation_time #=> Time
|
2747
|
+
# resp.annotation_store_versions[0].update_time #=> Time
|
2748
|
+
# resp.annotation_store_versions[0].status_message #=> String
|
2749
|
+
# resp.annotation_store_versions[0].version_size_bytes #=> Integer
|
2750
|
+
# resp.next_token #=> String
|
2751
|
+
#
|
2752
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationStoreVersions AWS API Documentation
|
2753
|
+
#
|
2754
|
+
# @overload list_annotation_store_versions(params = {})
|
2755
|
+
# @param [Hash] params ({})
|
2756
|
+
def list_annotation_store_versions(params = {}, options = {})
|
2757
|
+
req = build_request(:list_annotation_store_versions, params)
|
2758
|
+
req.send_request(options)
|
2759
|
+
end
|
2760
|
+
|
2366
2761
|
# Retrieves a list of annotation stores.
|
2367
2762
|
#
|
2368
2763
|
# @option params [Array<String>] :ids
|
@@ -3037,6 +3432,7 @@ module Aws::Omics
|
|
3037
3432
|
# resp.items[0].start_time #=> Time
|
3038
3433
|
# resp.items[0].stop_time #=> Time
|
3039
3434
|
# resp.items[0].gpus #=> Integer
|
3435
|
+
# resp.items[0].instance_type #=> String
|
3040
3436
|
# resp.next_token #=> String
|
3041
3437
|
#
|
3042
3438
|
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunTasks AWS API Documentation
|
@@ -3160,6 +3556,64 @@ module Aws::Omics
|
|
3160
3556
|
req.send_request(options)
|
3161
3557
|
end
|
3162
3558
|
|
3559
|
+
# Lists all shares associated with an account.
|
3560
|
+
#
|
3561
|
+
# @option params [required, String] :resource_owner
|
3562
|
+
# The account that owns the analytics store shared.
|
3563
|
+
#
|
3564
|
+
# @option params [Types::Filter] :filter
|
3565
|
+
# Attributes used to filter for a specific subset of shares.
|
3566
|
+
#
|
3567
|
+
# @option params [String] :next_token
|
3568
|
+
# Next token returned in the response of a previous
|
3569
|
+
# ListReadSetUploadPartsRequest call. Used to get the next page of
|
3570
|
+
# results.
|
3571
|
+
#
|
3572
|
+
# @option params [Integer] :max_results
|
3573
|
+
# The maximum number of shares to return in one page of results.
|
3574
|
+
#
|
3575
|
+
# @return [Types::ListSharesResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
3576
|
+
#
|
3577
|
+
# * {Types::ListSharesResponse#shares #shares} => Array<Types::ShareDetails>
|
3578
|
+
# * {Types::ListSharesResponse#next_token #next_token} => String
|
3579
|
+
#
|
3580
|
+
# The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}.
|
3581
|
+
#
|
3582
|
+
# @example Request syntax with placeholder values
|
3583
|
+
#
|
3584
|
+
# resp = client.list_shares({
|
3585
|
+
# resource_owner: "SELF", # required, accepts SELF, OTHER
|
3586
|
+
# filter: {
|
3587
|
+
# resource_arns: ["String"],
|
3588
|
+
# status: ["PENDING"], # accepts PENDING, ACTIVATING, ACTIVE, DELETING, DELETED, FAILED
|
3589
|
+
# },
|
3590
|
+
# next_token: "String",
|
3591
|
+
# max_results: 1,
|
3592
|
+
# })
|
3593
|
+
#
|
3594
|
+
# @example Response structure
|
3595
|
+
#
|
3596
|
+
# resp.shares #=> Array
|
3597
|
+
# resp.shares[0].share_id #=> String
|
3598
|
+
# resp.shares[0].resource_arn #=> String
|
3599
|
+
# resp.shares[0].principal_subscriber #=> String
|
3600
|
+
# resp.shares[0].owner_id #=> String
|
3601
|
+
# resp.shares[0].status #=> String, one of "PENDING", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "FAILED"
|
3602
|
+
# resp.shares[0].status_message #=> String
|
3603
|
+
# resp.shares[0].share_name #=> String
|
3604
|
+
# resp.shares[0].creation_time #=> Time
|
3605
|
+
# resp.shares[0].update_time #=> Time
|
3606
|
+
# resp.next_token #=> String
|
3607
|
+
#
|
3608
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListShares AWS API Documentation
|
3609
|
+
#
|
3610
|
+
# @overload list_shares(params = {})
|
3611
|
+
# @param [Hash] params ({})
|
3612
|
+
def list_shares(params = {}, options = {})
|
3613
|
+
req = build_request(:list_shares, params)
|
3614
|
+
req.send_request(options)
|
3615
|
+
end
|
3616
|
+
|
3163
3617
|
# Retrieves a list of tags for a resource.
|
3164
3618
|
#
|
3165
3619
|
# @option params [required, String] :resource_arn
|
@@ -3371,6 +3825,9 @@ module Aws::Omics
|
|
3371
3825
|
# @option params [required, Array<Types::AnnotationImportItemSource>] :items
|
3372
3826
|
# Items to import.
|
3373
3827
|
#
|
3828
|
+
# @option params [String] :version_name
|
3829
|
+
# The name of the annotation store version.
|
3830
|
+
#
|
3374
3831
|
# @option params [Types::FormatOptions] :format_options
|
3375
3832
|
# Formatting options for the annotation file.
|
3376
3833
|
#
|
@@ -3394,6 +3851,7 @@ module Aws::Omics
|
|
3394
3851
|
# source: "S3Uri", # required
|
3395
3852
|
# },
|
3396
3853
|
# ],
|
3854
|
+
# version_name: "VersionName",
|
3397
3855
|
# format_options: {
|
3398
3856
|
# tsv_options: {
|
3399
3857
|
# read_options: {
|
@@ -3884,7 +4342,7 @@ module Aws::Omics
|
|
3884
4342
|
#
|
3885
4343
|
# resp = client.update_annotation_store({
|
3886
4344
|
# name: "String", # required
|
3887
|
-
# description: "
|
4345
|
+
# description: "Description",
|
3888
4346
|
# })
|
3889
4347
|
#
|
3890
4348
|
# @example Response structure
|
@@ -3913,6 +4371,56 @@ module Aws::Omics
|
|
3913
4371
|
req.send_request(options)
|
3914
4372
|
end
|
3915
4373
|
|
4374
|
+
# Updates the description of an annotation store version.
|
4375
|
+
#
|
4376
|
+
# @option params [required, String] :name
|
4377
|
+
# The name of an annotation store.
|
4378
|
+
#
|
4379
|
+
# @option params [required, String] :version_name
|
4380
|
+
# The name of an annotation store version.
|
4381
|
+
#
|
4382
|
+
# @option params [String] :description
|
4383
|
+
# The description of an annotation store.
|
4384
|
+
#
|
4385
|
+
# @return [Types::UpdateAnnotationStoreVersionResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods:
|
4386
|
+
#
|
4387
|
+
# * {Types::UpdateAnnotationStoreVersionResponse#store_id #store_id} => String
|
4388
|
+
# * {Types::UpdateAnnotationStoreVersionResponse#id #id} => String
|
4389
|
+
# * {Types::UpdateAnnotationStoreVersionResponse#status #status} => String
|
4390
|
+
# * {Types::UpdateAnnotationStoreVersionResponse#name #name} => String
|
4391
|
+
# * {Types::UpdateAnnotationStoreVersionResponse#version_name #version_name} => String
|
4392
|
+
# * {Types::UpdateAnnotationStoreVersionResponse#description #description} => String
|
4393
|
+
# * {Types::UpdateAnnotationStoreVersionResponse#creation_time #creation_time} => Time
|
4394
|
+
# * {Types::UpdateAnnotationStoreVersionResponse#update_time #update_time} => Time
|
4395
|
+
#
|
4396
|
+
# @example Request syntax with placeholder values
|
4397
|
+
#
|
4398
|
+
# resp = client.update_annotation_store_version({
|
4399
|
+
# name: "String", # required
|
4400
|
+
# version_name: "String", # required
|
4401
|
+
# description: "Description",
|
4402
|
+
# })
|
4403
|
+
#
|
4404
|
+
# @example Response structure
|
4405
|
+
#
|
4406
|
+
# resp.store_id #=> String
|
4407
|
+
# resp.id #=> String
|
4408
|
+
# resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED"
|
4409
|
+
# resp.name #=> String
|
4410
|
+
# resp.version_name #=> String
|
4411
|
+
# resp.description #=> String
|
4412
|
+
# resp.creation_time #=> Time
|
4413
|
+
# resp.update_time #=> Time
|
4414
|
+
#
|
4415
|
+
# @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateAnnotationStoreVersion AWS API Documentation
|
4416
|
+
#
|
4417
|
+
# @overload update_annotation_store_version(params = {})
|
4418
|
+
# @param [Hash] params ({})
|
4419
|
+
def update_annotation_store_version(params = {}, options = {})
|
4420
|
+
req = build_request(:update_annotation_store_version, params)
|
4421
|
+
req.send_request(options)
|
4422
|
+
end
|
4423
|
+
|
3916
4424
|
# Updates a run group.
|
3917
4425
|
#
|
3918
4426
|
# @option params [required, String] :id
|
@@ -3977,7 +4485,7 @@ module Aws::Omics
|
|
3977
4485
|
#
|
3978
4486
|
# resp = client.update_variant_store({
|
3979
4487
|
# name: "String", # required
|
3980
|
-
# description: "
|
4488
|
+
# description: "Description",
|
3981
4489
|
# })
|
3982
4490
|
#
|
3983
4491
|
# @example Response structure
|
@@ -4088,7 +4596,7 @@ module Aws::Omics
|
|
4088
4596
|
params: params,
|
4089
4597
|
config: config)
|
4090
4598
|
context[:gem_name] = 'aws-sdk-omics'
|
4091
|
-
context[:gem_version] = '1.
|
4599
|
+
context[:gem_version] = '1.13.0'
|
4092
4600
|
Seahorse::Client::Request.new(handlers, context)
|
4093
4601
|
end
|
4094
4602
|
|
@@ -4154,23 +4662,25 @@ module Aws::Omics
|
|
4154
4662
|
# The following table lists the valid waiter names, the operations they call,
|
4155
4663
|
# and the default `:delay` and `:max_attempts` values.
|
4156
4664
|
#
|
4157
|
-
# | waiter_name | params
|
4158
|
-
# | --------------------------------- |
|
4159
|
-
# | annotation_import_job_created | {Client#get_annotation_import_job}
|
4160
|
-
# | annotation_store_created | {Client#get_annotation_store}
|
4161
|
-
# | annotation_store_deleted | {Client#get_annotation_store}
|
4162
|
-
# |
|
4163
|
-
# |
|
4164
|
-
# |
|
4165
|
-
# |
|
4166
|
-
# |
|
4167
|
-
# |
|
4168
|
-
# |
|
4169
|
-
# |
|
4170
|
-
# |
|
4171
|
-
# |
|
4172
|
-
# |
|
4173
|
-
# |
|
4665
|
+
# | waiter_name | params | :delay | :max_attempts |
|
4666
|
+
# | --------------------------------- | ------------------------------------- | -------- | ------------- |
|
4667
|
+
# | annotation_import_job_created | {Client#get_annotation_import_job} | 30 | 20 |
|
4668
|
+
# | annotation_store_created | {Client#get_annotation_store} | 30 | 20 |
|
4669
|
+
# | annotation_store_deleted | {Client#get_annotation_store} | 30 | 20 |
|
4670
|
+
# | annotation_store_version_created | {Client#get_annotation_store_version} | 30 | 20 |
|
4671
|
+
# | annotation_store_version_deleted | {Client#get_annotation_store_version} | 30 | 20 |
|
4672
|
+
# | read_set_activation_job_completed | {Client#get_read_set_activation_job} | 30 | 20 |
|
4673
|
+
# | read_set_export_job_completed | {Client#get_read_set_export_job} | 30 | 20 |
|
4674
|
+
# | read_set_import_job_completed | {Client#get_read_set_import_job} | 30 | 20 |
|
4675
|
+
# | reference_import_job_completed | {Client#get_reference_import_job} | 30 | 20 |
|
4676
|
+
# | run_completed | {Client#get_run} | 30 | 20 |
|
4677
|
+
# | run_running | {Client#get_run} | 30 | 20 |
|
4678
|
+
# | task_completed | {Client#get_run_task} | 30 | 20 |
|
4679
|
+
# | task_running | {Client#get_run_task} | 30 | 20 |
|
4680
|
+
# | variant_import_job_created | {Client#get_variant_import_job} | 30 | 20 |
|
4681
|
+
# | variant_store_created | {Client#get_variant_store} | 30 | 20 |
|
4682
|
+
# | variant_store_deleted | {Client#get_variant_store} | 30 | 20 |
|
4683
|
+
# | workflow_active | {Client#get_workflow} | 3 | 10 |
|
4174
4684
|
#
|
4175
4685
|
# @raise [Errors::FailureStateError] Raised when the waiter terminates
|
4176
4686
|
# because the waiter has entered a state that it will not transition
|
@@ -4224,6 +4734,8 @@ module Aws::Omics
|
|
4224
4734
|
annotation_import_job_created: Waiters::AnnotationImportJobCreated,
|
4225
4735
|
annotation_store_created: Waiters::AnnotationStoreCreated,
|
4226
4736
|
annotation_store_deleted: Waiters::AnnotationStoreDeleted,
|
4737
|
+
annotation_store_version_created: Waiters::AnnotationStoreVersionCreated,
|
4738
|
+
annotation_store_version_deleted: Waiters::AnnotationStoreVersionDeleted,
|
4227
4739
|
read_set_activation_job_completed: Waiters::ReadSetActivationJobCompleted,
|
4228
4740
|
read_set_export_job_completed: Waiters::ReadSetExportJobCompleted,
|
4229
4741
|
read_set_import_job_completed: Waiters::ReadSetImportJobCompleted,
|